BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031139
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 77/172 (44%), Gaps = 35/172 (20%)
Query: 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQ 72
KT + + +GDI++ VD IV+ N L GG AIH AAGP L AC ++ + Q
Sbjct: 2 KTRIHVVQGDITKLAVD----VIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQ 57
Query: 73 PRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPED--------------------- 111
CP G A IT LP V+HTVGPV+ ED
Sbjct: 58 G--DCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTS 115
Query: 112 -----ILRSAYKYPPDEAATIAISTVKEFANDF---KEVHFILFTDDIYNVW 155
I Y YP AA IA+ TV EF ++V+F+ + ++ +++
Sbjct: 116 VAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLY 167
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 68/158 (43%), Gaps = 40/158 (25%)
Query: 33 DAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92
DAIV+ N LL GG IH AAGP L C + C G+A+IT G++LP
Sbjct: 77 DAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQS------CKTGKAKITGGYRLPA 130
Query: 93 SHVIHTVGPVF------------------NFHCNPEDILRS---------AYKYPPDEAA 125
+VIHTVGP+ + E LRS + YP + AA
Sbjct: 131 KYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAA 190
Query: 126 TIAISTVKEFANDFKE-------VHFILFTDDIYNVWL 156
I ++T++E+ K+ F+ +DIY L
Sbjct: 191 EIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRL 228
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
L + +GD++R VD +V+ +NE L G AAA+ +AAGP+LQ C QI + + R+
Sbjct: 39 LIVQQGDLARLPVD----VVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRL 94
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDI--LRSAYK 118
PG A I+ KLP HVIH VGP ++ + P + LR A +
Sbjct: 95 L--PGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQ 137
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
+++ +GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++
Sbjct: 4 IRVVQGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKI 55
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTV 132
R GEA +T LPV +VIH V + +R A K ++A + + TV
Sbjct: 56 RV--GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTV 108
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase
Osh55, Northeast Structural Genomics Consortium Target
Or130
Length = 167
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTV 132
GEA +T LPV +VIH V + +R A K ++A + + TV
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTV 108
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED
SERINE Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or187
Length = 167
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTV 132
GEA +T LPV +VIH V + +R A K ++A + + TV
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTV 108
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
pdb|4ETK|B Chain B, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
Length = 167
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
++ +GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++
Sbjct: 4 IRAVQGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKI 55
Query: 76 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTV 132
R GEA +T LPV +VIH V + +R A K ++A + + TV
Sbjct: 56 RV--GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTV 108
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed
Serine Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or185
Length = 167
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTV 132
GEA +T LPV +VIH V + +R A K ++A + + TV
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTV 108
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|B Chain B, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|C Chain C, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|D Chain D, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
Length = 167
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPP 79
+GDI+ + DAIV+ N L LG A AI GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRI----GKIRV-- 57
Query: 80 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTV 132
GEA +T LPV +VIH V + +R A K ++A + + TV
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTV 108
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + + E
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKYPPDEAA 125
R GE +TP L + +V HTVGP+ + + E + L A+ P ++A
Sbjct: 69 QFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAE 128
Query: 126 TIAISTV 132
+ + ++
Sbjct: 129 EMGVESI 135
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + + E
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKYPPDEAA 125
R GE +TP L + +V HTVGP+ + + E + L A+ P ++A
Sbjct: 69 QFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAE 128
Query: 126 TIAISTV 132
+ + ++
Sbjct: 129 EMGVESI 135
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + + E
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMRE 68
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKYPPDEAA 125
R GE +TP L + +V HTVGP+ + + E + L A+ P ++A
Sbjct: 69 QFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAE 128
Query: 126 TIAISTV 132
+ + ++
Sbjct: 129 EMGVESI 135
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 43/191 (22%)
Query: 5 VQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKA 64
+ T S L++ + DI+ +D SDA+V PTN +GG + + + G + +A
Sbjct: 10 LSTKSLFLGQKLQVVQADIAS--ID--SDAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEA 65
Query: 65 CYQIPEAQPRVRCPPGE---ARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYK--- 118
++ R + P E A ++ G LP VIH PV+ E++L K
Sbjct: 66 VLEL-----RKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCL 119
Query: 119 ----------------------YPPDEAATI---AIST--VKEFANDFKEVHFILFTDDI 151
+P AA + AIS+ V ++ K V+F+LF +
Sbjct: 120 ALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSES 179
Query: 152 YNVWLKKAKEL 162
+++++ +L
Sbjct: 180 IGIYVQEMAKL 190
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 45/181 (24%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRV 75
L++ + DI+ +D SDA+V PTN +GG + + G + +A ++ R
Sbjct: 39 LQVVQADIAS--ID--SDAVVHPTNTDFYIGGEVGNTLEKKGGKEFVEAVLEL-----RK 89
Query: 76 RCPPGE---ARITPGFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYK------------- 118
+ P E A ++ G LP VIH PV+ C E++L K
Sbjct: 90 KNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKS 147
Query: 119 ------------YPPDEAATI---AIST--VKEFANDFKEVHFILFTDDIYNVWLKKAKE 161
+P AA + AIS+ V ++ K V+F+LF + +++++ +
Sbjct: 148 IAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAK 207
Query: 162 L 162
L
Sbjct: 208 L 208
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase
Length = 211
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEA----AGPDLQKACYQIPE 70
+LK+++GDI+++ + AIV+ N+ L GG A AI +A AG + + E
Sbjct: 22 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAXRE 77
Query: 71 AQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKYPPDEAA 125
R GE +TP L + +V HTVGP+ + + E + L A+ P ++A
Sbjct: 78 QFGRDYIDHGEVVVTPAXNLEERGIKYVFHTVGPICSGXWSEELKEKLYKAFLGPLEKAE 137
Query: 126 TIAISTV 132
+ ++
Sbjct: 138 EXGVESI 144
>pdb|3EWO|A Chain A, Ibv Nsp3 Adrp Domain
pdb|3EWO|B Chain B, Ibv Nsp3 Adrp Domain
pdb|3EWP|A Chain A, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
pdb|3EWP|B Chain B, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
Length = 177
Score = 32.7 bits (73), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 35 IVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94
IV+ NE + GG A AI + GPD + C + P + +TP F +
Sbjct: 40 IVNAANEHMSHGGGVAKAIADFCGPDFVEYCADYVKKH-----GPQQKLVTPSFVKGIQC 94
Query: 95 VIHTVGPVFNFHCNPEDILRSAYK 118
V + VGP N + L +AYK
Sbjct: 95 VNNVVGPRHG-DSNLREKLVAAYK 117
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 41/164 (25%)
Query: 33 DAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGE---ARITPGFK 89
+AI++PTN + L + + G + +A ++ R + P E A ++ G
Sbjct: 55 EAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLEL-----RKKNGPLEVAGAAVSAGHG 109
Query: 90 LPVSHVIHTVGPVFNF-HCNPEDILRSAYK-------------------------YPPDE 123
LP VIH PV+ C E++L K +P
Sbjct: 110 LPAKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQT 167
Query: 124 AATI---AIST--VKEFANDFKEVHFILFTDDIYNVWLKKAKEL 162
AA + AIS+ V ++ K V+F+LF + +++++ +L
Sbjct: 168 AAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKL 211
>pdb|2VRI|A Chain A, Structure Of The Nsp3 X-Domain Of Human Coronavirus Nl63
Length = 174
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 10 FSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAI 53
F+ ++K GDIS S D +V+ NE LL GG A AI
Sbjct: 13 FAVYKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAI 56
>pdb|2ZDS|A Chain A, Crystal Structure Of Sco6571 From Streptomyces Coelicolor
A3(2)
pdb|2ZDS|B Chain B, Crystal Structure Of Sco6571 From Streptomyces Coelicolor
A3(2)
pdb|2ZDS|C Chain C, Crystal Structure Of Sco6571 From Streptomyces Coelicolor
A3(2)
pdb|2ZDS|D Chain D, Crystal Structure Of Sco6571 From Streptomyces Coelicolor
A3(2)
pdb|2ZDS|E Chain E, Crystal Structure Of Sco6571 From Streptomyces Coelicolor
A3(2)
pdb|2ZDS|F Chain F, Crystal Structure Of Sco6571 From Streptomyces Coelicolor
A3(2)
Length = 340
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 91 PVSHVIHTVGPVFNFHCNPEDILRSAYKYPPDEAATIAISTVKEFANDFKEVHFIL---- 146
P+ V G F +P +I AY Y A A+ F +F HF+
Sbjct: 164 PILDVFDAEGVRFAHEVHPSEI---AYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLD 220
Query: 147 -------FTDDIYNVWLKKAKELLQG 165
F D IY+V K+A++ L G
Sbjct: 221 PVGFLWDFRDRIYHVDCKEARKRLDG 246
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 80 GEARITPGFKLPVSHVIHTVGPVFN 104
G+AR+ G H+IH VGP FN
Sbjct: 55 GKARLVKG---AAKHIIHAVGPNFN 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,128,300
Number of Sequences: 62578
Number of extensions: 208310
Number of successful extensions: 478
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 25
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)