Query 031139
Match_columns 165
No_of_seqs 107 out of 1141
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 1.4E-40 3E-45 257.9 17.1 143 7-156 11-185 (186)
2 cd02907 Macro_Af1521_BAL_like 100.0 1.2E-37 2.5E-42 239.8 18.1 144 13-162 1-175 (175)
3 PRK04143 hypothetical protein; 100.0 2.4E-37 5.1E-42 251.1 18.0 146 12-162 81-262 (264)
4 cd02908 Macro_Appr_pase_like M 100.0 3.7E-37 8E-42 235.0 17.7 135 15-159 1-164 (165)
5 PRK00431 RNase III inhibitor; 100.0 6.5E-37 1.4E-41 235.9 17.9 146 12-163 1-175 (177)
6 cd02905 Macro_GDAP2_like Macro 100.0 1.1E-35 2.3E-40 221.7 13.8 112 15-136 2-140 (140)
7 COG2110 Predicted phosphatase 100.0 3.1E-34 6.7E-39 220.8 16.4 147 13-163 2-176 (179)
8 cd02906 Macro_1 Macro domain, 100.0 1.1E-32 2.5E-37 206.9 12.3 114 15-133 1-147 (147)
9 cd02903 Macro_BAL_like Macro d 100.0 3.1E-31 6.7E-36 196.8 13.7 110 14-135 1-137 (137)
10 cd03330 Macro_2 Macro domain, 99.9 5.2E-27 1.1E-31 172.9 13.5 107 15-132 1-132 (133)
11 KOG2633 Hismacro and SEC14 dom 99.9 8.3E-25 1.8E-29 169.8 11.6 134 12-161 31-195 (200)
12 cd02900 Macro_Appr_pase Macro 99.9 2.1E-24 4.6E-29 167.6 13.7 123 14-136 19-186 (186)
13 smart00506 A1pp Appr-1"-p proc 99.9 4.6E-22 9.9E-27 145.3 12.3 105 16-128 2-133 (133)
14 PRK13341 recombination factor 99.9 1.3E-24 2.9E-29 197.4 -1.9 148 12-164 473-707 (725)
15 cd02749 Macro Macro domain, a 99.9 2.2E-21 4.8E-26 144.2 13.3 111 15-132 1-146 (147)
16 PF01661 Macro: Macro domain; 99.8 2.9E-20 6.3E-25 132.8 7.1 91 36-128 1-118 (118)
17 cd02901 Macro_Poa1p_like Macro 99.7 1E-15 2.2E-20 113.4 10.9 109 15-134 1-139 (140)
18 PHA02595 tk.4 hypothetical pro 99.1 4.8E-09 1E-13 79.3 12.9 124 15-149 2-153 (154)
19 PF14519 Macro_2: Macro-like d 98.3 5E-06 1.1E-10 68.1 9.0 122 13-137 41-215 (280)
20 cd03331 Macro_Poa1p_like_SNF2 96.5 0.025 5.4E-07 42.7 8.7 86 16-105 2-94 (152)
21 PHA03033 hypothetical protein; 74.8 14 0.0003 27.2 6.0 80 15-106 2-82 (142)
22 KOG1502 Flavonol reductase/cin 65.6 16 0.00035 31.0 5.4 47 92-144 79-126 (327)
23 TIGR02452 conserved hypothetic 65.4 12 0.00026 30.8 4.5 39 118-156 220-265 (266)
24 COG4295 Uncharacterized protei 58.2 27 0.00059 28.2 5.2 45 118-162 232-281 (285)
25 PF10154 DUF2362: Uncharacteri 41.7 2.6E+02 0.0057 25.3 9.2 90 75-164 370-503 (510)
26 PRK05325 hypothetical protein; 36.4 79 0.0017 27.7 5.1 86 76-161 283-396 (401)
27 PF05185 PRMT5: PRMT5 arginine 33.5 28 0.0006 30.8 1.9 27 13-39 240-266 (448)
28 PRK09070 hypothetical protein; 30.7 87 0.0019 27.7 4.5 58 76-134 310-377 (447)
29 PF04285 DUF444: Protein of un 29.8 87 0.0019 27.6 4.3 86 76-161 307-418 (421)
30 PRK13574 anthranilate synthase 29.5 74 0.0016 27.9 3.8 59 76-135 284-352 (420)
31 TIGR01820 TrpE-arch anthranila 27.4 76 0.0016 27.9 3.5 60 76-136 286-355 (421)
32 PRK05940 anthranilate synthase 26.9 1.1E+02 0.0024 27.3 4.4 59 76-135 316-384 (463)
33 TIGR00553 pabB aminodeoxychori 25.9 90 0.002 26.4 3.6 58 76-134 198-265 (328)
34 TIGR00564 trpE_most anthranila 24.4 1E+02 0.0022 27.2 3.8 59 76-135 319-387 (454)
35 PRK13571 anthranilate synthase 24.1 1.4E+02 0.003 26.9 4.6 59 76-135 362-430 (506)
36 PRK06772 salicylate synthase I 23.8 90 0.002 27.6 3.3 53 76-128 299-361 (434)
37 PF07900 DUF1670: Protein of u 23.6 61 0.0013 26.0 2.1 52 91-145 138-193 (220)
38 PRK13565 anthranilate synthase 23.3 1.3E+02 0.0028 27.0 4.2 59 76-135 345-413 (490)
39 KOG1734 Predicted RING-contain 22.7 17 0.00037 30.2 -1.3 42 44-98 217-258 (328)
40 PRK05877 aminodeoxychorismate 22.4 1.4E+02 0.0029 26.3 4.1 58 76-134 261-328 (405)
41 PF10307 DUF2410: Hypothetical 22.2 2.6E+02 0.0057 22.0 5.3 39 125-163 119-157 (197)
42 PF04682 Herpes_BTRF1: Herpesv 22.2 1.7E+02 0.0038 24.0 4.4 26 138-163 160-197 (256)
43 PRK15465 pabB aminodeoxychoris 22.1 1.2E+02 0.0026 26.9 3.8 60 76-136 317-386 (453)
44 PRK13570 anthranilate synthase 21.9 1.3E+02 0.0028 26.7 3.9 59 76-135 321-389 (455)
45 TIGR01824 PabB-clade2 aminodeo 21.3 1E+02 0.0022 26.4 3.1 60 76-136 225-294 (355)
46 cd00448 YjgF_YER057c_UK114_fam 21.3 2.5E+02 0.0055 18.4 5.6 43 122-164 31-80 (107)
47 PRK13573 anthranilate synthase 21.2 1.2E+02 0.0025 27.4 3.6 55 76-130 357-421 (503)
48 TIGR00565 trpE_proteo anthrani 21.2 1.4E+02 0.003 26.9 4.0 58 76-134 359-426 (498)
49 COG4019 Uncharacterized protei 20.9 2.6E+02 0.0057 20.7 4.7 34 129-162 26-59 (156)
50 PRK13564 anthranilate synthase 20.7 1.4E+02 0.0029 27.1 3.9 58 76-134 376-443 (520)
51 PF02807 ATP-gua_PtransN: ATP: 20.6 77 0.0017 21.0 1.8 41 118-164 30-70 (76)
52 TIGR00824 EIIA-man PTS system, 20.4 2E+02 0.0042 20.2 4.0 18 119-136 35-52 (116)
53 PRK13572 anthranilate synthase 20.0 1.4E+02 0.0031 26.3 3.8 58 76-134 298-365 (435)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=1.4e-40 Score=257.94 Aligned_cols=143 Identities=22% Similarity=0.378 Sum_probs=130.3
Q ss_pred eeecCCCceEEEEEccc--ceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEE
Q 031139 7 TLSFSTKTSLKISKGDI--SRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARI 84 (165)
Q Consensus 7 ~~~~~~~~~i~i~~GdI--t~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~v 84 (165)
.+++..|.++.|++||| |++++ |||||++|++|.++|||++||+++||++|++||+++.+.+ +++++|++++
T Consensus 11 ~~~~~~~~~i~i~~gDI~~t~~~v----DaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~~G~~~i 84 (186)
T cd02904 11 TKSLFLGQKLSLVQSDISIGSIDV----EGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRKSN--GPLEIAGAAV 84 (186)
T ss_pred chhhcCCCEEEEEECCccccceec----cEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHHhc--CCCCCCCEEE
Confidence 45667899999999999 99887 9999999999999999999999999999999999876433 6999999999
Q ss_pred ccCCCCCCceEEEecCCCcCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc--
Q 031139 85 TPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN-- 137 (165)
Q Consensus 85 T~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~-- 137 (165)
|++|+||||||||+|||.|+.+ ..+++|++|| |||++++|++|++++++|++
T Consensus 85 T~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~ 163 (186)
T cd02904 85 SQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVST 163 (186)
T ss_pred ccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999764 3567888887 99999999999999999995
Q ss_pred ---CCCEEEEEecChHHHHHHH
Q 031139 138 ---DFKEVHFILFTDDIYNVWL 156 (165)
Q Consensus 138 ---~~~~I~~V~~~~~~~~~f~ 156 (165)
++++|+||+|+++.+++|.
T Consensus 164 ~~~~l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 164 MSSSIKQIYFVLFDSESIGIYV 185 (186)
T ss_pred CCCCccEEEEEECCHHHHHHhh
Confidence 4789999999999999984
No 2
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=1.2e-37 Score=239.79 Aligned_cols=144 Identities=32% Similarity=0.467 Sum_probs=132.2
Q ss_pred CceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 031139 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (165)
Q Consensus 13 ~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~ 92 (165)
|.+|+|++|||+++++ ||||||+|+++.++||++++|+++||+++++||+++.+++ +++++|++++|++|+|+|
T Consensus 1 ~~~i~i~~GdI~~~~~----DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~~~--g~~~~G~~~~T~~~~L~~ 74 (175)
T cd02907 1 GVTLSVIKGDITRFPV----DAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVRKN--GPVPTGEVVVTSAGKLPC 74 (175)
T ss_pred CcEEEEEECCcceeec----CEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHHhc--CCCCCCcEEEecCCCCCC
Confidence 6789999999999987 9999999999999999999999999999999999887543 699999999999999999
Q ss_pred ceEEEecCCCcCCCC--CHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc----CCCE
Q 031139 93 SHVIHTVGPVFNFHC--NPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN----DFKE 141 (165)
Q Consensus 93 k~IiH~v~P~~~~~~--~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~----~~~~ 141 (165)
|||||+|+|.|..+. +..++|++|| |||++++|++|++++.+|+. .+++
T Consensus 75 k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~ 154 (175)
T cd02907 75 KYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKE 154 (175)
T ss_pred CEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccE
Confidence 999999999999864 4567777776 89999999999999999996 5789
Q ss_pred EEEEecChHHHHHHHHHHHHH
Q 031139 142 VHFILFTDDIYNVWLKKAKEL 162 (165)
Q Consensus 142 I~~V~~~~~~~~~f~~~~~~~ 162 (165)
|+||+++++++++|.++++.+
T Consensus 155 I~~v~~~~~~~~~~~~al~~~ 175 (175)
T cd02907 155 IYLVDYDEQTVEAFEKALEVF 175 (175)
T ss_pred EEEEECCHHHHHHHHHHHhhC
Confidence 999999999999999988753
No 3
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=251.15 Aligned_cols=146 Identities=36% Similarity=0.504 Sum_probs=132.1
Q ss_pred CCceEEEEEcccceeeccCCCcEEEecCCCCCCC-----CChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEcc
Q 031139 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLL-----GGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITP 86 (165)
Q Consensus 12 ~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~-----~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~ 86 (165)
.+.+|.||+||||++.+ |||||+||+.|.+ +|||+++|+++||++|++||+++++++ ++++++|++++|+
T Consensus 81 ~~~~i~i~~GDIt~l~v----DAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~~-g~~~~~G~a~iT~ 155 (264)
T PRK04143 81 KYDNIFLWQGDITRLKV----DAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTEQ-GRKEATGQAKITR 155 (264)
T ss_pred CCCEEEEEECCcceeec----CEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHHc-CCCCCCceEEEec
Confidence 57899999999999987 9999999999975 489999999999999999999987553 4578999999999
Q ss_pred CCCCCCceEEEecCCCcCCCC---CHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc-
Q 031139 87 GFKLPVSHVIHTVGPVFNFHC---NPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN- 137 (165)
Q Consensus 87 ~~~L~~k~IiH~v~P~~~~~~---~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~- 137 (165)
||+|||+||||+|||.|+.+. ..+++|++|| |||+++||++|++++++|++
T Consensus 156 ~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~ 235 (264)
T PRK04143 156 AYNLPAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKE 235 (264)
T ss_pred CCCCCCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998842 4578899888 99999999999999999996
Q ss_pred --CCCEEEEEecChHHHHHHHHHHHHH
Q 031139 138 --DFKEVHFILFTDDIYNVWLKKAKEL 162 (165)
Q Consensus 138 --~~~~I~~V~~~~~~~~~f~~~~~~~ 162 (165)
+..+|+|++|+++.+..|.+.|..+
T Consensus 236 ~~~~~~Vif~vf~~~d~~iy~~~l~~~ 262 (264)
T PRK04143 236 NPSKLKVVFNVFTDEDLELYQKALNKE 262 (264)
T ss_pred CCCCCEEEEEEcCHHHHHHHHHHHHHh
Confidence 3468999999999999999998865
No 4
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=3.7e-37 Score=235.02 Aligned_cols=135 Identities=46% Similarity=0.768 Sum_probs=125.6
Q ss_pred eEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCce
Q 031139 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (165)
Q Consensus 15 ~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~k~ 94 (165)
+|+|++|||+++++ ||||||+|++|.++||+++||+++||++|++||+++. ++++|++++|++|+|+|+|
T Consensus 1 ~i~i~~GdI~~~~~----daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~------~~~~G~~v~T~~~~l~~~~ 70 (165)
T cd02908 1 KIEIIQGDITKLEV----DAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELR------GCPTGEAVITSGYNLPAKY 70 (165)
T ss_pred CeEEEecccceeec----CEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCCEEEeeCCCCCCCE
Confidence 47899999999987 9999999999999999999999999999999999986 7799999999999999999
Q ss_pred EEEecCCCcCCCC-CHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc---CCCEEEEE
Q 031139 95 VIHTVGPVFNFHC-NPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN---DFKEVHFI 145 (165)
Q Consensus 95 IiH~v~P~~~~~~-~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~---~~~~I~~V 145 (165)
|||++||.|+.+. .+.+.|++|| |||++++|++|++++++|++ .+++|+||
T Consensus 71 IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~l~~V~~v 150 (165)
T cd02908 71 VIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFV 150 (165)
T ss_pred EEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999999998763 4577888777 89999999999999999995 68999999
Q ss_pred ecChHHHHHHHHHH
Q 031139 146 LFTDDIYNVWLKKA 159 (165)
Q Consensus 146 ~~~~~~~~~f~~~~ 159 (165)
+++++++++|.+.+
T Consensus 151 ~~~~~~~~~f~~~l 164 (165)
T cd02908 151 CFSEEDYEIYEKAL 164 (165)
T ss_pred eCCHHHHHHHHHHh
Confidence 99999999999875
No 5
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=6.5e-37 Score=235.92 Aligned_cols=146 Identities=40% Similarity=0.640 Sum_probs=133.6
Q ss_pred CCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCC
Q 031139 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 91 (165)
Q Consensus 12 ~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~ 91 (165)
.|++|+|++|||+++++ ||||||+|+.+.++||++++|++++|+++++||+++...+ +++++|++++|++|+|+
T Consensus 1 ~~~~i~i~~Gdi~~~~~----daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~~~--~~l~~G~~~~T~~~~l~ 74 (177)
T PRK00431 1 MGMRIEVVQGDITELEV----DAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQQQ--GPCPTGEAVITSAGRLP 74 (177)
T ss_pred CCcEEEEEeCCcccccC----CEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCeEEEecCCCCC
Confidence 47899999999999977 9999999999999999999999999999999999987543 69999999999999999
Q ss_pred CceEEEecCCCcCCCC-CHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc---CCCEE
Q 031139 92 VSHVIHTVGPVFNFHC-NPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN---DFKEV 142 (165)
Q Consensus 92 ~k~IiH~v~P~~~~~~-~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~---~~~~I 142 (165)
|+||||+|||.|+.+. ...+.|++|| |||++++|++|++++.+|++ ++++|
T Consensus 75 ~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~l~~I 154 (177)
T PRK00431 75 AKYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEV 154 (177)
T ss_pred CCEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCCcCEE
Confidence 9999999999999865 3467777776 99999999999999999985 67999
Q ss_pred EEEecChHHHHHHHHHHHHHh
Q 031139 143 HFILFTDDIYNVWLKKAKELL 163 (165)
Q Consensus 143 ~~V~~~~~~~~~f~~~~~~~~ 163 (165)
+||+++++++++|.+.|+...
T Consensus 155 ~~v~~~~~~~~~f~~~l~~~~ 175 (177)
T PRK00431 155 YFVCYDEEAYRLYERLLTQQG 175 (177)
T ss_pred EEEECCHHHHHHHHHHHHHhh
Confidence 999999999999999998754
No 6
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=1.1e-35 Score=221.70 Aligned_cols=112 Identities=40% Similarity=0.670 Sum_probs=104.8
Q ss_pred eEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCce
Q 031139 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (165)
Q Consensus 15 ~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~k~ 94 (165)
+|.|++||||++++ |||||++|++|.++|||+++|+++||++|++||++.. ++++|++++|++|+|||+|
T Consensus 2 ki~l~~GdIt~~~v----DaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~------~~~~G~~~~T~~~~L~~k~ 71 (140)
T cd02905 2 RIVLWEGDICNLNV----DAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLG------GCRTGEAKLTKGYNLPARF 71 (140)
T ss_pred eEEEEeCccCcccC----CEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCcEEEecCCCCCccE
Confidence 58899999999987 9999999999999999999999999999999999875 7999999999999999999
Q ss_pred EEEecCCCcCCCCC--HHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHh
Q 031139 95 VIHTVGPVFNFHCN--PEDILRSAY-------------------------KYPPDEAATIAISTVKEFA 136 (165)
Q Consensus 95 IiH~v~P~~~~~~~--~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~ 136 (165)
|||+|||.|+.++. .+++|++|| |||++++|++|++++++|+
T Consensus 72 VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 72 IIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred EEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999998752 468898887 8999999999999999996
No 7
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=3.1e-34 Score=220.76 Aligned_cols=147 Identities=38% Similarity=0.606 Sum_probs=135.6
Q ss_pred CceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 031139 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (165)
Q Consensus 13 ~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~ 92 (165)
..+|.+++||||++.+ |||||++|+.|.++|||+.||++++|++|+++|++...+.++.++++|++++|++|+|+.
T Consensus 2 ~~~i~~v~GDIt~~~~----daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a 77 (179)
T COG2110 2 MTNIRVVQGDITKLEA----DAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPA 77 (179)
T ss_pred CceEEEEecccceeeh----hheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCC
Confidence 4589999999999987 999999999999999999999999999999999999876666789999999999999999
Q ss_pred ceEEEecCCCcCCCC-CHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc--CCCEEEE
Q 031139 93 SHVIHTVGPVFNFHC-NPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN--DFKEVHF 144 (165)
Q Consensus 93 k~IiH~v~P~~~~~~-~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~--~~~~I~~ 144 (165)
+||||++||.|..+. .+.+.|.+|| |||++++|++++.++.+|+. ++.+|.|
T Consensus 78 ~~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~~~~~~v~~ 157 (179)
T COG2110 78 KYVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPEASIETVIF 157 (179)
T ss_pred CEEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhcccccccEEEE
Confidence 999999999998865 4567888887 99999999999999999996 7899999
Q ss_pred EecChHHHHHHHHHHHHHh
Q 031139 145 ILFTDDIYNVWLKKAKELL 163 (165)
Q Consensus 145 V~~~~~~~~~f~~~~~~~~ 163 (165)
|+|+++.+..|...+.+..
T Consensus 158 v~~~~e~~~~~~~~~~~~~ 176 (179)
T COG2110 158 VVYGEETARVYEELLSTHL 176 (179)
T ss_pred EecCchhHHHHHHHHhhhc
Confidence 9999999999999887764
No 8
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=1.1e-32 Score=206.94 Aligned_cols=114 Identities=43% Similarity=0.671 Sum_probs=102.5
Q ss_pred eEEEEEcccceeeccCCCcEEEecCCCCCCC-----CChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCC
Q 031139 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLL-----GGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFK 89 (165)
Q Consensus 15 ~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~-----~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~ 89 (165)
+|++++||||++++ ||||||+|+.|.+ +|||+++|+++||++|++||+++.++ .++++++|++++|++|+
T Consensus 1 ~i~v~~GdIt~~~~----DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~-~g~~~~~G~a~~T~~~~ 75 (147)
T cd02906 1 SIYLWKGDITTLKV----DAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTK-QGREEPTGQAKITPGYN 75 (147)
T ss_pred CeEEEECCcCCccC----CEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHh-cCCCCCCCeEEEEeCCC
Confidence 47899999999987 9999999999964 48999999999999999999998754 34589999999999999
Q ss_pred CCCceEEEecCCCcCCCC---CHHHHHHHhh-------------------------cCChHHHHHHHHHHHH
Q 031139 90 LPVSHVIHTVGPVFNFHC---NPEDILRSAY-------------------------KYPPDEAATIAISTVK 133 (165)
Q Consensus 90 L~~k~IiH~v~P~~~~~~---~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~ 133 (165)
|+|+||||+|||.|..+. +++++|++|| |||++++|++++++++
T Consensus 76 L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 76 LPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred CCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 999999999999998864 3578899888 9999999999999874
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=99.97 E-value=3.1e-31 Score=196.85 Aligned_cols=110 Identities=34% Similarity=0.431 Sum_probs=99.1
Q ss_pred ceEEEEEcccceeeccCCCcEEEecCCCC-CCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCC-CCcEEEccCCCCC
Q 031139 14 TSLKISKGDISRWCVDRSSDAIVSPTNEI-LLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCP-PGEARITPGFKLP 91 (165)
Q Consensus 14 ~~i~i~~GdIt~~~~~~~~DaIVNs~n~~-l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~-~G~~~vT~~~~L~ 91 (165)
++|+|++|||+++++ ||||||+|+. +.++||++++|++++|+++++||++.. .++ .|++++|++|+|+
T Consensus 1 ~~i~i~~GdI~~~~~----DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~------~~~~~G~~~vT~~~~L~ 70 (137)
T cd02903 1 LTLQVAKGDIEDETT----DVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAK------LGQTVGSVIVTKGGNLP 70 (137)
T ss_pred CEEEEEeCccCCccC----CEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHc------CCCCCCeEEEecCCCCC
Confidence 478999999999987 9999999999 788999999999999999999999987 333 6999999999999
Q ss_pred CceEEEecCCCcCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHH
Q 031139 92 VSHVIHTVGPVFNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVKEF 135 (165)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f 135 (165)
||||||+++|.|..+ +.+.|++|| |||++++|++|++++.+|
T Consensus 71 ~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 71 CKYVYHVVLPNWSNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999876 455665555 999999999999999987
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.95 E-value=5.2e-27 Score=172.93 Aligned_cols=107 Identities=31% Similarity=0.415 Sum_probs=96.0
Q ss_pred eEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCce
Q 031139 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (165)
Q Consensus 15 ~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~k~ 94 (165)
.|++++|||+++.+ |||||++|+.+.+++|++++|++++|+++++||++.. ++++|++++|++++|+|||
T Consensus 1 ~i~i~~GdI~~~~~----DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~------~~~~G~~~~t~~~~l~~k~ 70 (133)
T cd03330 1 ELEVVQGDITKVDA----DAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKA------PIPVGEAVITGAGDLPARY 70 (133)
T ss_pred CEEEEEcccccccC----CEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcC------CCCCCeEEEEeCCCCCCCE
Confidence 37899999999987 9999999999999999999999999999999998754 8999999999999999999
Q ss_pred EEEecCCCcCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHH
Q 031139 95 VIHTVGPVFNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTV 132 (165)
Q Consensus 95 IiH~v~P~~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i 132 (165)
|||+++|.+.. ....+.|++|| |||++++|++|.+++
T Consensus 71 Iih~~~~~~~~-~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 71 VIHAATMEEPG-RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred EEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 99999997654 34456677666 999999999999986
No 11
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=8.3e-25 Score=169.84 Aligned_cols=134 Identities=35% Similarity=0.557 Sum_probs=120.4
Q ss_pred CCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCC
Q 031139 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 91 (165)
Q Consensus 12 ~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~ 91 (165)
.|-.+.+|++|++.+++ |||| |..++|++++|++++|+++.+||..+. .+++|.+.+|++++||
T Consensus 31 ~~~~i~lwr~d~~~l~v----~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~------~c~tG~ak~t~~~~Lp 94 (200)
T KOG2633|consen 31 DNGGISLWRGDGKTLEV----DAVV------LLGGKGVDEAIHRAAGPELPLECAYLH------GCRTGAAKSTGGYGLP 94 (200)
T ss_pred cccCeeEeecccccccc----eeee------eccCcchhHHHHHhcCCcchHHHHhhc------CCCCCeeEecCCCCCc
Confidence 57799999999999998 9998 888999999999999999999999886 5999999999999999
Q ss_pred CceEEEecCCCcCCCCC-HHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc-----CCC
Q 031139 92 VSHVIHTVGPVFNFHCN-PEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN-----DFK 140 (165)
Q Consensus 92 ~k~IiH~v~P~~~~~~~-~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~-----~~~ 140 (165)
+++|||+|||.|..++. +...|.+|| |||.++||++.++++++|+. .++
T Consensus 95 ak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f~~~~d~~l~ 174 (200)
T KOG2633|consen 95 AKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFFVKNKDSSLK 174 (200)
T ss_pred eeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHHhhCCCceEE
Confidence 99999999999999773 233588887 99999999999999999995 466
Q ss_pred EEEEEecChHHHHHHHHHHHH
Q 031139 141 EVHFILFTDDIYNVWLKKAKE 161 (165)
Q Consensus 141 ~I~~V~~~~~~~~~f~~~~~~ 161 (165)
.+.|+++++++|.+|..++..
T Consensus 175 ~~~f~~~d~e~~~~~l~~~~~ 195 (200)
T KOG2633|consen 175 TVPFLDYDSESYGAYLPEYAP 195 (200)
T ss_pred EEEEeccCCchHHHHHhhhcc
Confidence 799999999999998877654
No 12
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.92 E-value=2.1e-24 Score=167.59 Aligned_cols=123 Identities=21% Similarity=0.141 Sum_probs=100.0
Q ss_pred ceEEEEEcccceeec------cCCCcEEEecCCCCCCCCChHHHHHHHhhC-hHHHHHHhhccccCCCCCCCCCcEEEcc
Q 031139 14 TSLKISKGDISRWCV------DRSSDAIVSPTNEILLLGGFTAAAIHEAAG-PDLQKACYQIPEAQPRVRCPPGEARITP 86 (165)
Q Consensus 14 ~~i~i~~GdIt~~~~------~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG-~~l~~e~~~~~~~~~~~~~~~G~~~vT~ 86 (165)
..+.+++|+++++.. ..++|+||||||+.+.++||+++||++++| ++|+++|++.+..+..|.+++|++++|+
T Consensus 19 ~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~ 98 (186)
T cd02900 19 KYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVP 98 (186)
T ss_pred CCeEEEeCCceecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEec
Confidence 457778888887662 123699999999999999999999999999 6999999876544445799999999999
Q ss_pred CCCCC----------CceEEEecCCCcC-CCCCHHHHHHHhh---------------------------cCChHHHHHHH
Q 031139 87 GFKLP----------VSHVIHTVGPVFN-FHCNPEDILRSAY---------------------------KYPPDEAATIA 128 (165)
Q Consensus 87 ~~~L~----------~k~IiH~v~P~~~-~~~~~~~~L~~c~---------------------------g~p~~~~A~~~ 128 (165)
+++|+ ++||||++++++. ......+.|.+|| |||++++|++|
T Consensus 99 ~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m 178 (186)
T cd02900 99 LGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQM 178 (186)
T ss_pred CCCCccccccccccCCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHH
Confidence 99999 9999999886554 1122345555555 99999999999
Q ss_pred HHHHHHHh
Q 031139 129 ISTVKEFA 136 (165)
Q Consensus 129 l~~i~~f~ 136 (165)
+.++++|.
T Consensus 179 ~~ai~~f~ 186 (186)
T cd02900 179 AFAIRLFN 186 (186)
T ss_pred HHHHHHhC
Confidence 99999984
No 13
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.88 E-value=4.6e-22 Score=145.29 Aligned_cols=105 Identities=40% Similarity=0.523 Sum_probs=89.6
Q ss_pred EEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHH-HHHHhhccccCCCCCCCCCcEEEccCCCCCCce
Q 031139 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDL-QKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 94 (165)
Q Consensus 16 i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l-~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~k~ 94 (165)
+++++|||+++++ |+|||++|+++.+++|++++|++++|+++ ++++++.. ++++++|++++|+++++++++
T Consensus 2 i~~~~Gdi~~~~~----d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~ 73 (133)
T smart00506 2 LKVVKGDITKPRA----DAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLA----GGECPVGTAVVTEGGNLPAKY 73 (133)
T ss_pred eEEEeCCCCcccC----CEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhc----CCCcCCccEEEecCCCCCCCE
Confidence 6889999999876 99999999999999999999999999996 55555433 248999999999999999999
Q ss_pred EEEecCCCcCCC-CCHHHHHHHhh-------------------------cCChHHHHHHH
Q 031139 95 VIHTVGPVFNFH-CNPEDILRSAY-------------------------KYPPDEAATIA 128 (165)
Q Consensus 95 IiH~v~P~~~~~-~~~~~~L~~c~-------------------------g~p~~~~A~~~ 128 (165)
|||+++|+|..+ ....+.|++|| |+|.+++++++
T Consensus 74 Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 74 VIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 999999999986 34556666665 88888888763
No 14
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.88 E-value=1.3e-24 Score=197.42 Aligned_cols=148 Identities=21% Similarity=0.269 Sum_probs=127.8
Q ss_pred CCceEEEEE----cccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHH---HHHHhhccccC------------
Q 031139 12 TKTSLKISK----GDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDL---QKACYQIPEAQ------------ 72 (165)
Q Consensus 12 ~~~~i~i~~----GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l---~~e~~~~~~~~------------ 72 (165)
+|..+.+++ ||||.+++ |+|||++|+.|++++|++++|+++||+.+ +++|+++.++.
T Consensus 473 ~~~~~~~~~~~~~~dit~~~~----d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~ 548 (725)
T PRK13341 473 EGERLAILRDRLWSDITWQRH----DRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLL 548 (725)
T ss_pred cccHHHHHHHHHhcccccccc----ceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCcccc
Confidence 567788899 99999987 99999999999999999999999999999 89998754320
Q ss_pred --------C----------CCCCCCCcEEEc------------cCCCCCCceEEEecCCCcCCCCCHHHHHHHhh-----
Q 031139 73 --------P----------RVRCPPGEARIT------------PGFKLPVSHVIHTVGPVFNFHCNPEDILRSAY----- 117 (165)
Q Consensus 73 --------~----------~~~~~~G~~~vT------------~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~c~----- 117 (165)
. .|++++|++++| ++|+|+|+||||+|||.|..+.. ++.|.+||
T Consensus 549 ~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~ 627 (725)
T PRK13341 549 DGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALL 627 (725)
T ss_pred ccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHH
Confidence 0 369999999999 99999999999999999987643 34555554
Q ss_pred ------------------------------cCChHHHHHHHHHHHHHHhcC---CCEEEEEecChHHHHHHHHHHHHHhc
Q 031139 118 ------------------------------KYPPDEAATIAISTVKEFAND---FKEVHFILFTDDIYNVWLKKAKELLQ 164 (165)
Q Consensus 118 ------------------------------g~p~~~~A~~~l~~i~~f~~~---~~~I~~V~~~~~~~~~f~~~~~~~~~ 164 (165)
|||.+++++++++++.+|+.. ..++.++.++++.+..|.+.+.++|-
T Consensus 628 ~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 707 (725)
T PRK13341 628 EAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIKRWLAQGPDYRQALATNLEEERICNLDEELTRILG 707 (725)
T ss_pred HHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHHHHHhcCCcHHHHHhccCCHHHHHHHHHHHHHHhh
Confidence 899999999999999999963 45677999999999999999988774
No 15
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.87 E-value=2.2e-21 Score=144.18 Aligned_cols=111 Identities=32% Similarity=0.493 Sum_probs=96.9
Q ss_pred eEEEEEcccce-eeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCC-C
Q 031139 15 SLKISKGDISR-WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP-V 92 (165)
Q Consensus 15 ~i~i~~GdIt~-~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~-~ 92 (165)
.|++++|||++ ..+ |+|||++|+.+.+++|++.+|++++|+++++++++....+ .+++|++.+|++++++ +
T Consensus 1 ~i~~~~GDi~~~~~~----d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~~---~~~~G~~~~t~~~~~~~~ 73 (147)
T cd02749 1 KIKVVSGDITKPLGS----DAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKEL---ELQVGEAVLTKGYNLDGA 73 (147)
T ss_pred CEEEEECCCCCCCCC----CEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhccc---CCCCCCEEECcCCCCCcC
Confidence 37899999999 765 9999999999999999999999999999999999987433 4899999999999999 9
Q ss_pred ceEEEecCCCcCCCC--CHHHHHHHhh-------------------------cC------ChHHHHHHHHHHH
Q 031139 93 SHVIHTVGPVFNFHC--NPEDILRSAY-------------------------KY------PPDEAATIAISTV 132 (165)
Q Consensus 93 k~IiH~v~P~~~~~~--~~~~~L~~c~-------------------------g~------p~~~~A~~~l~~i 132 (165)
+||||+++|+|.... ...+.|++|| |+ |...++++|+.++
T Consensus 74 ~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 74 KYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred CEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 999999999999864 2345565555 88 9999999998875
No 16
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.82 E-value=2.9e-20 Score=132.83 Aligned_cols=91 Identities=44% Similarity=0.657 Sum_probs=79.7
Q ss_pred EecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCceEEEecCCCcCCCC--CHHHHH
Q 031139 36 VSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHC--NPEDIL 113 (165)
Q Consensus 36 VNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~v~P~~~~~~--~~~~~L 113 (165)
||++|+++.+++|++++|++++|++++++|++..+.. +++++|++++|++++|++++|||+++|.|.... ...+.|
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~~--~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L 78 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKKG--GELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEAL 78 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHHH--HSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhccc--CcccCCCeeeecCCCccccceEEEecceeccccccccHHHH
Confidence 8999999999999999999999999999998886432 379999999999999999999999999998433 456666
Q ss_pred HHhh-------------------------cCChHHHHHHH
Q 031139 114 RSAY-------------------------KYPPDEAATIA 128 (165)
Q Consensus 114 ~~c~-------------------------g~p~~~~A~~~ 128 (165)
++|| |+|++++|++|
T Consensus 79 ~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 79 ESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 6665 89999999886
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.66 E-value=1e-15 Score=113.38 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=83.7
Q ss_pred eEEEEEccccee-eccCCCcEEEecCCCCCCCCChHHHHHHHhh--C-hHHHHHHhhccccCCCCCCCCCcEE-EccCCC
Q 031139 15 SLKISKGDISRW-CVDRSSDAIVSPTNEILLLGGFTAAAIHEAA--G-PDLQKACYQIPEAQPRVRCPPGEAR-ITPGFK 89 (165)
Q Consensus 15 ~i~i~~GdIt~~-~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~a--G-~~l~~e~~~~~~~~~~~~~~~G~~~-vT~~~~ 89 (165)
+|++++|||++. ++ |+|||++|+.+.+++|++.+|.++. + ..+++.|++. .+..|++. ++.+++
T Consensus 1 ~i~~v~GDi~~~~~~----d~Iv~~~N~~~~mG~Gia~~i~~~~p~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~ 69 (140)
T cd02901 1 MITYVKGDLLHAPEA----AALAHAVNCDGVMGKGIALQFKEKFPEFVEEYRAACKKK-------ELLLGGVAVLERGSS 69 (140)
T ss_pred CeEEEcCccccCCCC----CEEEEEEcCCCccChHHHHHHHHHCcHHHHHHHHHHHhc-------CCCCCcEEEEecCCC
Confidence 378999999999 66 9999999999999999999999973 3 3556656553 23455554 566788
Q ss_pred CCCceEEEecCCCcCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHHH
Q 031139 90 LPVSHVIHTVGPVFNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVKE 134 (165)
Q Consensus 90 L~~k~IiH~v~P~~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~ 134 (165)
+++++|+|+++|.|.......+.|++|+ |+|.+++++++.+.+.+
T Consensus 70 ~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~ 139 (140)
T cd02901 70 LVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD 139 (140)
T ss_pred CCceEEEEeeccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence 8899999999998766443344555554 89999999998887653
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.07 E-value=4.8e-09 Score=79.32 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=88.7
Q ss_pred eEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEE-ccCCCCCCc
Q 031139 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARI-TPGFKLPVS 93 (165)
Q Consensus 15 ~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~v-T~~~~L~~k 93 (165)
.|++++|||++... ...++|+|++|....+|+|+|.+|.++.+ ++.++.++... +++.+.|++.+ +.++..+-+
T Consensus 2 ~i~~v~GDl~~~~~-~~~~~i~h~~N~~g~mG~GIA~~~k~~~P-~~~~~y~~~~~---~~~~~lG~~~~~~~~~~~~~~ 76 (154)
T PHA02595 2 IVDYIKGDIVALFL-QGKGNIAHGCNCFHTMGSGIAGQLAKAFP-QILEADKLTTE---GDVEKLGTFSVWEKYVGGHKA 76 (154)
T ss_pred eEEEECCccccccc-CCCceEEEeeCCCCcCChHHHHHHHHHcC-hHHHHHHHHhc---CCccccceEEEEEeeccCCCE
Confidence 47889999987742 12369999999999999999999999996 66666655542 24778999965 666777779
Q ss_pred eEEEecCCCcCCCCC-HHHHHHHhh--------------------------cCChHHHHHHHHHHHHHHhcCCCEEEEEe
Q 031139 94 HVIHTVGPVFNFHCN-PEDILRSAY--------------------------KYPPDEAATIAISTVKEFANDFKEVHFIL 146 (165)
Q Consensus 94 ~IiH~v~P~~~~~~~-~~~~L~~c~--------------------------g~p~~~~A~~~l~~i~~f~~~~~~I~~V~ 146 (165)
+|+|..+- |+.+.. .-+.|++|+ |.|.+++.+++.+. ++.+ +|.++.
T Consensus 77 ~I~nl~tq-~~~~~~~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~----~~~~-~i~Vy~ 150 (154)
T PHA02595 77 YCFNLYTQ-FDPGPNLEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA----TPDI-DIVVVE 150 (154)
T ss_pred EEEEEecc-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh----cCCC-cEEEEE
Confidence 99999876 766542 123344443 78888888877664 3333 467766
Q ss_pred cCh
Q 031139 147 FTD 149 (165)
Q Consensus 147 ~~~ 149 (165)
|++
T Consensus 151 ~~~ 153 (154)
T PHA02595 151 YEK 153 (154)
T ss_pred ecC
Confidence 654
No 19
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=98.29 E-value=5e-06 Score=68.12 Aligned_cols=122 Identities=20% Similarity=0.219 Sum_probs=68.1
Q ss_pred CceEEEEEcccceeec---------cCCCcEEEecCCCCCCCCChHHHHHHHhhCh-HHHHHHhhccccCCCCCCCCCcE
Q 031139 13 KTSLKISKGDISRWCV---------DRSSDAIVSPTNEILLLGGFTAAAIHEAAGP-DLQKACYQIPEAQPRVRCPPGEA 82 (165)
Q Consensus 13 ~~~i~i~~GdIt~~~~---------~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~-~l~~e~~~~~~~~~~~~~~~G~~ 82 (165)
+..+.+..|++..+.- +.+.|+||.|+||...++||..-||.+..|. .++.-+++.. .....++|++
T Consensus 41 ~~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l---~~~y~pvGs~ 117 (280)
T PF14519_consen 41 SNYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQL---GERYHPVGSC 117 (280)
T ss_dssp ---EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHT---TTS---TT--
T ss_pred CceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHH---hccccCCCee
Confidence 3348888898875541 1257999999999999999999999999775 4444455543 2235788988
Q ss_pred EEccC----------CCCCCceEEEecC---C---CcCCCCC---HHHHHHHhh------------------------cC
Q 031139 83 RITPG----------FKLPVSHVIHTVG---P---VFNFHCN---PEDILRSAY------------------------KY 119 (165)
Q Consensus 83 ~vT~~----------~~L~~k~IiH~v~---P---~~~~~~~---~~~~L~~c~------------------------g~ 119 (165)
-+..- ....++||+|+-+ | .|..... .-+.+-++. |+
T Consensus 118 tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p~~IdtLiiPGLgTGyGgV 197 (280)
T PF14519_consen 118 TVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAPEDIDTLIIPGLGTGYGGV 197 (280)
T ss_dssp EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS-TT-SEEEE--SSSSTT--
T ss_pred EEEECchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCCCCCCeEEECCcccccCCC
Confidence 76543 2245789999965 3 3443221 112221111 88
Q ss_pred ChHHHHHHHHHHHHHHhc
Q 031139 120 PPDEAATIAISTVKEFAN 137 (165)
Q Consensus 120 p~~~~A~~~l~~i~~f~~ 137 (165)
|++.+|+.|+-++.-|.-
T Consensus 198 ~p~~sAk~M~fAl~l~~l 215 (280)
T PF14519_consen 198 PPEISAKQMAFALRLYNL 215 (280)
T ss_dssp -HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999883
No 20
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=96.52 E-value=0.025 Score=42.70 Aligned_cols=86 Identities=16% Similarity=0.071 Sum_probs=58.9
Q ss_pred EEEEEcccceeecc-CCCcEEEecCCCCCCCC-ChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCC----
Q 031139 16 LKISKGDISRWCVD-RSSDAIVSPTNEILLLG-GFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFK---- 89 (165)
Q Consensus 16 i~i~~GdIt~~~~~-~~~DaIVNs~n~~l~~~-ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~---- 89 (165)
|+.++||+|.-..+ .++..|++..|.....| ||++.+|.++. |+..+.-++..+ .+.+..|++.+.+-..
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~-p~~~~~Y~~~~~---~~dl~LG~~~li~v~~~~~~ 77 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRS-DQPRKAYELAGK---MKDLHLGDLHLFPIDDKNSR 77 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhC-CcHHHHHHHHHh---cCCCccccEEEEEeccccCC
Confidence 77899999987641 12459999999999888 68999999987 444444433221 1367799998775421
Q ss_pred C-CCceEEEecCCCcCC
Q 031139 90 L-PVSHVIHTVGPVFNF 105 (165)
Q Consensus 90 L-~~k~IiH~v~P~~~~ 105 (165)
. +-.+|...++.....
T Consensus 78 ~~~~~~va~l~~q~~~~ 94 (152)
T cd03331 78 LKGPDWVALIVAQHRDK 94 (152)
T ss_pred CCCCeEEEEEEeEccCC
Confidence 1 135787888776444
No 21
>PHA03033 hypothetical protein; Provisional
Probab=74.77 E-value=14 Score=27.15 Aligned_cols=80 Identities=13% Similarity=0.016 Sum_probs=55.9
Q ss_pred eEEEEEcccceeeccCCCcEEEecCCCCCCCCChHH-HHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCc
Q 031139 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTA-AAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVS 93 (165)
Q Consensus 15 ~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs-~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~k 93 (165)
++.-+.|+|.++....+...+......++.+|.|.+ --+-+.-|. -+|.+++. ..+|++.+-.-.+ +
T Consensus 2 ~i~eIng~~~DLFS~p~~~sLaHCIsAD~~MGaGIA~v~FKkkyg~--V~eLk~Qk-------k~~GeVAvLk~d~---R 69 (142)
T PHA03033 2 KIEYINENIWDFLSDDDNINIISFISADFILCKDDCFIYIKKKYNS--IKELKKQK-------KKKGEVAYIYKNN---K 69 (142)
T ss_pred ceEEecCcchhhhcCCCcceEeeeehhhhhcCCChhhhhHHHHhCC--HHHHHhhc-------cCCCeEEEEecCC---E
Confidence 466688877766544567788888899999999999 777776776 33355543 3467776554443 7
Q ss_pred eEEEecCCCcCCC
Q 031139 94 HVIHTVGPVFNFH 106 (165)
Q Consensus 94 ~IiH~v~P~~~~~ 106 (165)
||+..++-.|-.+
T Consensus 70 yIYYLITKdyie~ 82 (142)
T PHA03033 70 YIIYIIIADYIED 82 (142)
T ss_pred EEEEEEeHHHHHH
Confidence 9999987666543
No 22
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=65.57 E-value=16 Score=30.98 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=30.1
Q ss_pred CceEEEecCCCcCCCCC-HHHHHHHhhcCChHHHHHHHHHHHHHHhcCCCEEEE
Q 031139 92 VSHVIHTVGPVFNFHCN-PEDILRSAYKYPPDEAATIAISTVKEFANDFKEVHF 144 (165)
Q Consensus 92 ~k~IiH~v~P~~~~~~~-~~~~L~~c~g~p~~~~A~~~l~~i~~f~~~~~~I~~ 144 (165)
|++|+|++.|.-....+ +.+++ -|.-+...-+++++.+.- ++++|.+
T Consensus 79 cdgVfH~Asp~~~~~~~~e~~li-----~pav~Gt~nVL~ac~~~~-sVkrvV~ 126 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLEDPEKELI-----DPAVKGTKNVLEACKKTK-SVKRVVY 126 (327)
T ss_pred CCEEEEeCccCCCCCCCcHHhhh-----hHHHHHHHHHHHHHhccC-CcceEEE
Confidence 99999999997765443 22343 355556666777766655 5555544
No 23
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=65.43 E-value=12 Score=30.79 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=33.2
Q ss_pred cCChHHHHHHHHHHHH---HHhcCCCEEEEEecChH----HHHHHH
Q 031139 118 KYPPDEAATIAISTVK---EFANDFKEVHFILFTDD----IYNVWL 156 (165)
Q Consensus 118 g~p~~~~A~~~l~~i~---~f~~~~~~I~~V~~~~~----~~~~f~ 156 (165)
+-|+.++|+...+.+. +|...+++|.|.+++.. .+++|.
T Consensus 220 ~N~p~~VA~~f~evL~~~~ef~g~F~~VvFAI~d~~~~~~~~~~F~ 265 (266)
T TIGR02452 220 GNDPAEVAKIFHDLLSPGGIFKGRIKEVVFAILDRHGQSTNTQIFR 265 (266)
T ss_pred CCCHHHHHHHHHHHhccCccccCceeEEEEEEeCCCCCCcHHhHhh
Confidence 6799999999999997 78889999999999843 577775
No 24
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.23 E-value=27 Score=28.20 Aligned_cols=45 Identities=27% Similarity=0.421 Sum_probs=36.3
Q ss_pred cCChHHHHHHHHHHHHH---HhcCCCEEEEEecChH--HHHHHHHHHHHH
Q 031139 118 KYPPDEAATIAISTVKE---FANDFKEVHFILFTDD--IYNVWLKKAKEL 162 (165)
Q Consensus 118 g~p~~~~A~~~l~~i~~---f~~~~~~I~~V~~~~~--~~~~f~~~~~~~ 162 (165)
+=++..+|+++.+.+.+ ++..++.|.|-+++.. +..+|.++++.+
T Consensus 232 rNdPA~Va~iF~~~Lleg~~~~g~fkhv~FavlD~n~~~~~iFr~ele~f 281 (285)
T COG4295 232 RNDPADVAKIFCQQLLEGISKLGDFKHVVFAVLDRNMTIVNIFRKELEYF 281 (285)
T ss_pred cCCHHHHHHHHHHHHhhhhhhhcccceEEEEEecCCchHHHHHHHHHHhh
Confidence 55889999999988865 4458999999888854 788999888754
No 25
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=41.69 E-value=2.6e+02 Score=25.32 Aligned_cols=90 Identities=23% Similarity=0.295 Sum_probs=61.7
Q ss_pred CCCCCCcEEEccCCCCC-CceEEEecCCC-cCCCC-----C----HHHHHHHhh-------cCCh---------------
Q 031139 75 VRCPPGEARITPGFKLP-VSHVIHTVGPV-FNFHC-----N----PEDILRSAY-------KYPP--------------- 121 (165)
Q Consensus 75 ~~~~~G~~~vT~~~~L~-~k~IiH~v~P~-~~~~~-----~----~~~~L~~c~-------g~p~--------------- 121 (165)
..+..|++.||.=-+|. +.-|+|.|.-. ...+. . -+.+|+.|. -+|.
T Consensus 370 ~~l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc 449 (510)
T PF10154_consen 370 STLKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWC 449 (510)
T ss_pred CcCCCCceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHH
Confidence 35689999999998887 57788998432 22211 1 246666654 1121
Q ss_pred HHHHHHHHHHHHHHhc--------CCCEEEEEecCh---HHHHHHHHHHHHHhc
Q 031139 122 DEAATIAISTVKEFAN--------DFKEVHFILFTD---DIYNVWLKKAKELLQ 164 (165)
Q Consensus 122 ~~~A~~~l~~i~~f~~--------~~~~I~~V~~~~---~~~~~f~~~~~~~~~ 164 (165)
-.=|+..+..++-|+- ..+.|.|++.+. +++..|...++.+|+
T Consensus 450 ~~Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~fr 503 (510)
T PF10154_consen 450 LKRAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIFR 503 (510)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhhc
Confidence 2337778888888883 247899998764 588899999988885
No 26
>PRK05325 hypothetical protein; Provisional
Probab=36.43 E-value=79 Score=27.68 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=50.8
Q ss_pred CCCCCcEEEccCCCCCC-------------ceEEEec-CCCcCCCC-CHHHHHH-----Hhh--cC----ChHHHHHHHH
Q 031139 76 RCPPGEARITPGFKLPV-------------SHVIHTV-GPVFNFHC-NPEDILR-----SAY--KY----PPDEAATIAI 129 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L~~-------------k~IiH~v-~P~~~~~~-~~~~~L~-----~c~--g~----p~~~~A~~~l 129 (165)
.-+.|..+++|++.|-- -|.+|+. |-+|+.+. .+.++|. .|= +| |...-...++
T Consensus 283 ~~esGGT~vSSA~~l~~eIi~~rYpp~~wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp~~~~f~Y~Ev~~~~~~~~~l~ 362 (401)
T PRK05325 283 SRESGGTIVSSAYKLALEIIEERYPPAEWNIYAFQASDGDNWSSDNPRCVELLREELLPVCNYFAYIEVTPRAYRHQTLW 362 (401)
T ss_pred cCCCCCeEehHHHHHHHHHHHhhCCHhHCeeEEEEcccCCCcCCCCHHHHHHHHHHHHHHhhheEEEEecCCCCCchHHH
Confidence 55678888888877641 4889986 88999876 3455554 221 11 1110234445
Q ss_pred HHHHHHhcCCC--EEEEEecChHHHHHHHHHHHH
Q 031139 130 STVKEFANDFK--EVHFILFTDDIYNVWLKKAKE 161 (165)
Q Consensus 130 ~~i~~f~~~~~--~I~~V~~~~~~~~~f~~~~~~ 161 (165)
.+......... .+..|.-.+++|.+|.+.|++
T Consensus 363 ~~y~~i~~~~~~f~~~~I~~~~dIyp~~r~lf~k 396 (401)
T PRK05325 363 REYERLQDTFPNFAMQRIRDKEDIYPVFRELFKK 396 (401)
T ss_pred HHHHHhhccCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 55543333322 344455556799999988865
No 27
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=33.47 E-value=28 Score=30.77 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=20.1
Q ss_pred CceEEEEEcccceeeccCCCcEEEecC
Q 031139 13 KTSLKISKGDISRWCVDRSSDAIVSPT 39 (165)
Q Consensus 13 ~~~i~i~~GdIt~~~~~~~~DaIVNs~ 39 (165)
+.+|.|++||+++++..+++|+||.=.
T Consensus 240 ~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 240 GDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp TTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred CCeEEEEeCcccCCCCCCceeEEEEec
Confidence 347999999999998777899999853
No 28
>PRK09070 hypothetical protein; Validated
Probab=30.72 E-value=87 Score=27.72 Aligned_cols=58 Identities=22% Similarity=0.462 Sum_probs=41.4
Q ss_pred CCCCCcEEEccCCCCC-CceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKLP-VSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKE 134 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L~-~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~ 134 (165)
-+..|++.+..-..+. ..+|.|.+.+.-.. +....++|+.|+ |.|+..|.++ ++.+..
T Consensus 310 vc~~gsV~V~~~~~ve~~~~V~HL~S~V~g~L~~~~~~~d~l~alfP~gsvtGaPK~rAmei-I~~lE~ 377 (447)
T PRK09070 310 ICAPGSVEVDELMTVESYAHVHHIVSNVRGRLRDGVTPGEVIRAVFPGGTITGCPKVRCMQI-IAELEQ 377 (447)
T ss_pred cCCCCcEeeCCceeEEEcCcEEEEEEEEEEEECCCCCHHHHHHHcCCCCccCCccHHHHHHH-HHHhcC
Confidence 4567888888766553 78999999875533 335578999888 9999997666 344443
No 29
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=29.84 E-value=87 Score=27.60 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=47.6
Q ss_pred CCCCCcEEEccCCCCC-------------CceEEEec-CCCcCCCC-CHHHHHH-----Hhh--cC--ChHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKLP-------------VSHVIHTV-GPVFNFHC-NPEDILR-----SAY--KY--PPDEAATIAIST 131 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L~-------------~k~IiH~v-~P~~~~~~-~~~~~L~-----~c~--g~--p~~~~A~~~l~~ 131 (165)
.-+.|..+++|++.|- --|++|+. |-+|+.+. .+.++|. .|- +| ............
T Consensus 307 ~~esGGT~vSSA~~l~~~ii~erypp~~wNiY~~~~SDGDN~~~D~~~~~~ll~~~llp~~~~f~Y~Ei~~~~~~~~~~~ 386 (421)
T PF04285_consen 307 SRESGGTRVSSAYELALEIIEERYPPSDWNIYVFHASDGDNWSSDNERCVELLEEELLPVCNYFGYGEITQPGRHSSWRE 386 (421)
T ss_pred cCCCCCeEehHHHHHHHHHHHhhCChhhceeeeEEcccCccccCCCHHHHHHHHHHHHHhcCeEEEEEeccCccchHHHH
Confidence 4566777777777654 14889986 88998876 3444444 331 11 000011111333
Q ss_pred HHHHhcCC--CEEEEEecChHHHHHHHHHHHH
Q 031139 132 VKEFANDF--KEVHFILFTDDIYNVWLKKAKE 161 (165)
Q Consensus 132 i~~f~~~~--~~I~~V~~~~~~~~~f~~~~~~ 161 (165)
...+.... ....-|.-.+++|.+|.+.|++
T Consensus 387 ~~~~~~~~~~f~~~~i~~~~di~~~~r~~f~~ 418 (421)
T PF04285_consen 387 YEELKESHDNFAMVRIREKEDIYPVFRELFKK 418 (421)
T ss_pred HHHHhhcCCCeEEEEeCCHHHHHHHHHHHhcc
Confidence 33333322 3444555566799999998875
No 30
>PRK13574 anthranilate synthase component I; Provisional
Probab=29.49 E-value=74 Score=27.93 Aligned_cols=59 Identities=32% Similarity=0.530 Sum_probs=42.3
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKEF 135 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~f 135 (165)
-+..|++.++.-..+ ...+|.|.+...-.. +....++|+.|+ |.|+..|.++ ++.+..+
T Consensus 284 vc~~gsV~V~~~~~ve~~~~V~HLvS~V~g~L~~~~~~~d~l~alfP~gsvtGaPK~rAmei-I~elE~~ 352 (420)
T PRK13574 284 VCVPGTVRVPELMYVEKYSHVQHIVSKVIGTLKKKYNALDVLKATFPAGTVSGAPKPMAMNI-IETLEEY 352 (420)
T ss_pred ccCCCcEecCCceeeeecCceEEEEEEEEEEECCCCCHHHHHHHhCCCCccCCccHHHHHHH-HHHhcCC
Confidence 467889988876554 478899998765433 234578898888 9999998776 5555443
No 31
>TIGR01820 TrpE-arch anthranilate synthase component I, archaeal clade. The Sulfolobus enzyme has been reported to be part of a gene cluster for Trp biosynthesis
Probab=27.41 E-value=76 Score=27.85 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=42.6
Q ss_pred CCCCCcEEEccCCC-CCCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHHHh
Q 031139 76 RCPPGEARITPGFK-LPVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKEFA 136 (165)
Q Consensus 76 ~~~~G~~~vT~~~~-L~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~f~ 136 (165)
-+..|++.+..-.. ....+|.|.+.+.-.. +....++|+.|+ |.|+..|.++ ++.+..+-
T Consensus 286 vc~~gsV~V~~~~~i~~~~~V~HL~S~V~g~L~~~~~~~d~l~alfP~gsvtGaPK~~Ame~-I~elE~~~ 355 (421)
T TIGR01820 286 VSEPGSVKVPEFMYVEKYSHVQHIESTVIGTLKKDYDAFDALRATFPAGTLSGAPKIRAMEI-IDELEKEP 355 (421)
T ss_pred hCCCCCEEECCccEEEEeCcEEEEEeEEEEEECCCCCHHHHHHHhCCCccccChhHHHHHHH-HHHhcCCC
Confidence 46688898877654 3478899999875443 234578899988 9999997776 45554433
No 32
>PRK05940 anthranilate synthase component I-like protein; Validated
Probab=26.90 E-value=1.1e+02 Score=27.27 Aligned_cols=59 Identities=22% Similarity=0.368 Sum_probs=42.1
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKEF 135 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~f 135 (165)
-+..|++.++.-..+ ...+|.|.+.+.-.. +....++|+.|+ |.|+..+.+++ +.+..+
T Consensus 316 vc~~gsV~V~~~~~ve~~~~V~HLvS~V~G~L~~~~~~~dll~al~P~gsvtGaPK~~Am~iI-~elE~~ 384 (463)
T PRK05940 316 VCQWGSVEVDELLTIERYSHVIHLVSNVVGTLQPNRDAIDLIRALFPGGTITGCPKVRCMEII-EELEPV 384 (463)
T ss_pred hCCCCcEEeCCcccccccCceEEEEeEEEEEECCCCCHHHHHHHhCCCCcCCCCcHHHHHHHH-HHhcCC
Confidence 567899988886665 478999998775444 234578999888 99998866654 344443
No 33
>TIGR00553 pabB aminodeoxychorismate synthase, component I, bacterial clade. Members of this family, aminodeoxychorismate synthase, component I (PabB), were designated para-aminobenzoate synthase component I until it was recognized that PabC, a lyase, completes the pathway of PABA synthesis. This family is closely related to anthranilate synthase component I (trpE), and both act on chorismate. The clade of PabB enzymes represented by this model includes sequences from Gram-positive and alpha and gamma Proteobacteria as well as Chlorobium, Nostoc, Fusobacterium and Arabidopsis. A closely related clade of fungal PabB enzymes is identified by TIGR01823, while another bacterial clade of potential PabB enzymes is more closely related to TrpE (TIGR01824).
Probab=25.89 E-value=90 Score=26.43 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=40.5
Q ss_pred CCCCCcEEEccCCCCC-CceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKLP-VSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKE 134 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L~-~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~ 134 (165)
-+..|++.+.+.+.+. ...|.|.+.+.-.. +....++|+.++ |.|+..+.++ ++.+..
T Consensus 198 i~~~gsV~v~~l~~v~~~~~v~HL~S~v~g~L~~~~~~~~ll~alfP~gsVtGaPK~~Am~~-I~~lE~ 265 (328)
T TIGR00553 198 IAEVGSVKVPELFVVETYPTVHQLVSTITARLREDLTLSDLFRALFPGGSITGAPKVRAMEI-IDELEP 265 (328)
T ss_pred hCCCCcEEeCCceEEEEeCcEEEEEEEEEEEECCCCCHHHHHHHhCCCCccCCCcHHHHHHH-HHHhcC
Confidence 4567888888877754 68899998765443 234578888887 9999886554 444443
No 34
>TIGR00564 trpE_most anthranilate synthase component I, non-proteobacterial lineages. A second family of TrpE enzymes is modelled by TIGR00565. The breaking of the TrpE family into these diverse models allows for the separation of the models for the related enzyme, PabB.
Probab=24.35 E-value=1e+02 Score=27.23 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=42.1
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKEF 135 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~f 135 (165)
-+..|++.++.-..+ ...+|.|.+.+.-.. +....++|+.|+ |.|+..+.+++ +.+..+
T Consensus 319 vc~~gsV~v~~~~~i~~~~~v~HL~S~v~g~L~~~~~~~d~l~a~~P~gsvtGaPK~~A~~~I-~~lE~~ 387 (454)
T TIGR00564 319 VCEPGSVEVPEFMKIERYSHVMHIVSTVEGRLKDGLTAIDALRATFPAGTVSGAPKIRAMELI-DELEPE 387 (454)
T ss_pred hCCCCcEEeCCceeEEEcCcEEEEEEEEEEEECCCCCHHHHHHHhCCCCCCCCCCHHHHHHHH-HHhcCC
Confidence 456788888887664 478999998765433 334578899888 99999977664 555443
No 35
>PRK13571 anthranilate synthase component I; Provisional
Probab=24.07 E-value=1.4e+02 Score=26.91 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=42.2
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKEF 135 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~f 135 (165)
-+..|++.+..-..+ ...+|.|.+.+.-.. +...-++|+.|+ |.|+..+.++ ++.+..+
T Consensus 362 vc~~gsV~V~~~~~ve~~~~V~HL~S~V~g~L~~~~~~~d~l~a~fP~gsvtGaPK~rAmei-I~elE~~ 430 (506)
T PRK13571 362 VCRPGTVRVVDFSHIERYSHVMHLVSTVTGELAEGRTALDAVTACFPAGTLSGAPKVRAMEL-IEELEPT 430 (506)
T ss_pred cCCCCCEEeCCcccccccCceEEEeeEEEEEECCCCCHHHHHHHhCCCcccCCCCHHHHHHH-HHHhcCC
Confidence 567899988887654 478999998765433 234578999988 9999997665 4455443
No 36
>PRK06772 salicylate synthase Irp9; Reviewed
Probab=23.79 E-value=90 Score=27.57 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=38.3
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIA 128 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~ 128 (165)
-+.+|++.+..-..+ ...+|.|.+.+.-.. +.+.-++|+.|+ |.|+..+.+++
T Consensus 299 vc~~gSV~V~~~~~v~~~~~V~HL~S~V~G~L~~~~~~~dll~alfP~gsVtGaPK~~Ame~I 361 (434)
T PRK06772 299 VCQPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDAWDAFTVLFPSITASGIPKNAALNAI 361 (434)
T ss_pred cCCCCCeecCCccEEEEeCcEEEEEEEEEEEECCCCCHHHHHHHcCCCCccCCCcHHHHHHHH
Confidence 466888888776654 467899998764333 335678898888 99999975554
No 37
>PF07900 DUF1670: Protein of unknown function (DUF1670); InterPro: IPR012872 The hypothetical eukaryotic proteins found in this family are of unknown function.
Probab=23.61 E-value=61 Score=25.99 Aligned_cols=52 Identities=29% Similarity=0.452 Sum_probs=37.1
Q ss_pred CCceEEEecCCCcCCCCCHHHHHHHhh-cCChHHHHHHH---HHHHHHHhcCCCEEEEE
Q 031139 91 PVSHVIHTVGPVFNFHCNPEDILRSAY-KYPPDEAATIA---ISTVKEFANDFKEVHFI 145 (165)
Q Consensus 91 ~~k~IiH~v~P~~~~~~~~~~~L~~c~-g~p~~~~A~~~---l~~i~~f~~~~~~I~~V 145 (165)
|.+-.+|-.||.-.. ...+++..+ |+|..+.|+.+ .+++.+|++.+++|.++
T Consensus 138 PtrG~i~DiGp~~tH---K~~ii~~~l~g~~~~eiar~t~HS~~av~rYi~~F~rV~~l 193 (220)
T PF07900_consen 138 PTRGTIHDIGPGVTH---KKIIIRLYLKGKPTPEIARRTNHSPEAVDRYIKDFKRVLML 193 (220)
T ss_pred ccCCcccccCCcchH---HHHHHHHHHcCCCHHHHHHHhccCHHHHHHHHHhhHHhHHH
Confidence 444556666665443 235556555 99999999986 57888999988888876
No 38
>PRK13565 anthranilate synthase component I; Provisional
Probab=23.26 E-value=1.3e+02 Score=27.00 Aligned_cols=59 Identities=24% Similarity=0.331 Sum_probs=42.3
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKEF 135 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~f 135 (165)
-+..|++.++.-..+ ...+|.|.+...-.. +...-++|+.|+ |.|+..|.+++ +.+..+
T Consensus 345 vc~~gsV~V~~~~~ve~~~~V~HL~S~V~g~L~~~~~~~dll~a~fP~gsvtGaPK~rA~~iI-~elE~~ 413 (490)
T PRK13565 345 VAETGSVKVTEKMVIERYSHVMHIVSNVEGKLKPGLTNMDVLRATFPAGTLSGAPKVRAMEII-DELEPV 413 (490)
T ss_pred cCCCCcEEecCcceEEEeCcEEEEEeEEEEEECCCCCHHHHHHHhCCCCCcCCCchHHHHHHH-HHhcCC
Confidence 456788888887765 468899998765433 234578999988 99999977766 445443
No 39
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.74 E-value=17 Score=30.24 Aligned_cols=42 Identities=21% Similarity=0.363 Sum_probs=30.7
Q ss_pred CCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCceEEEe
Q 031139 44 LLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHT 98 (165)
Q Consensus 44 ~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~k~IiH~ 98 (165)
.++-+++..+-..+|.++..+.++ +.++.+.++|.|.|++|-
T Consensus 217 lPtkhl~d~vCaVCg~~~~~s~~e-------------egvienty~LsCnHvFHE 258 (328)
T KOG1734|consen 217 LPTKHLSDSVCAVCGQQIDVSVDE-------------EGVIENTYKLSCNHVFHE 258 (328)
T ss_pred CCCCCCCcchhHhhcchheeecch-------------hhhhhhheeeecccchHH
Confidence 445567777888888887654422 346788899999999995
No 40
>PRK05877 aminodeoxychorismate synthase component I; Provisional
Probab=22.39 E-value=1.4e+02 Score=26.25 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=41.1
Q ss_pred CCCCCcEEEccCCCCC-CceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKLP-VSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKE 134 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L~-~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~ 134 (165)
-+.+|++.+..-..+. ..+|.|-+.+.-.. +....++|+.|+ |.|+..+.++ ++++..
T Consensus 261 vc~~GsV~V~~l~~ve~~~~V~HLvS~V~g~L~~~~~~~dll~alfP~gSVtGaPK~rAmei-I~elE~ 328 (405)
T PRK05877 261 VARTGTVTVPELLVVRPAPGVWHLVSTVSAQVPDELPMSDLLDATFPPASVTGTPKLRAREL-ISQWEP 328 (405)
T ss_pred cCCCCceecCCccceeecCceEEEEEEEEEEECCCCCHHHHHHHhCCCCccCCCCHHHHHHH-HHHhcC
Confidence 5678888888777653 67899998765443 234578999888 9999886555 444444
No 41
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=22.19 E-value=2.6e+02 Score=21.97 Aligned_cols=39 Identities=8% Similarity=-0.055 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHHHh
Q 031139 125 ATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELL 163 (165)
Q Consensus 125 A~~~l~~i~~f~~~~~~I~~V~~~~~~~~~f~~~~~~~~ 163 (165)
=+..+..+.++...+++|++..-.....+.|++.|.++-
T Consensus 119 K~~~l~~ll~~Y~~~~eI~IYeDR~~hvk~Fr~Ff~~~~ 157 (197)
T PF10307_consen 119 KQAFLEDLLHTYKNAEEIRIYEDRPKHVKGFRDFFEELN 157 (197)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHHhh
Confidence 345566666666688999999988888999988888764
No 42
>PF04682 Herpes_BTRF1: Herpesvirus BTRF1 protein conserved region; InterPro: IPR006772 This is a family of Herpesvirus proteins of unknown function.
Probab=22.18 E-value=1.7e+02 Score=23.98 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=19.0
Q ss_pred CCCEEEEEecChH------------HHHHHHHHHHHHh
Q 031139 138 DFKEVHFILFTDD------------IYNVWLKKAKELL 163 (165)
Q Consensus 138 ~~~~I~~V~~~~~------------~~~~f~~~~~~~~ 163 (165)
+++++.||+.+=. .-..|...++|||
T Consensus 160 rvEd~VFcLNsI~~~~f~~~V~~~~~~p~~~~a~eKYF 197 (256)
T PF04682_consen 160 RVEDIVFCLNSICSHIFQPRVRVDTTCPVIILAMEKYF 197 (256)
T ss_pred hHhheEeeeechhhccCCCCcccCCCchHHHHHHHHHH
Confidence 5677888776533 2457999999998
No 43
>PRK15465 pabB aminodeoxychorismate synthase subunit I; Provisional
Probab=22.07 E-value=1.2e+02 Score=26.92 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=42.4
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHHHh
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKEFA 136 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~f~ 136 (165)
-+..|++.++.-..+ ...+|.|.+...-.. +....++|+.|+ |-|+..|.+++ +++..+-
T Consensus 317 v~~~gsV~V~~~~~ve~~~~V~HLvS~V~g~L~~~~~~~d~l~a~fP~gsvtGaPK~rAmeiI-~elE~~~ 386 (453)
T PRK15465 317 VAVAGSVKVPELFVVEPFPAVHHLVSTITARLPEQLHASDLLRAAFPGGSITGAPKVRAMEII-DELEPQR 386 (453)
T ss_pred hCCCCCEEecceeeeeccCCEEEeEeEEEEEECCCCCHHHHHHHcCCCCccCCccHHHHHHHH-HHhcCCC
Confidence 567899988887655 467899998765443 224578999988 99998877665 4454443
No 44
>PRK13570 anthranilate synthase component I; Provisional
Probab=21.95 E-value=1.3e+02 Score=26.73 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=42.0
Q ss_pred CCCCCcEEEccCCC-CCCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFK-LPVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKEF 135 (165)
Q Consensus 76 ~~~~G~~~vT~~~~-L~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~f 135 (165)
-+..|++.+..-.. ....+|.|.+.+.-.. +...-++|+.|+ |.|+..|.++ ++.+..+
T Consensus 321 v~~~gsV~V~~~~~ie~~~~V~HLvS~V~g~L~~~~~~~d~l~a~fP~gsvtGaPK~rAm~i-I~elE~~ 389 (455)
T PRK13570 321 ISETGSVKVTKYMEVEKYRHVMHLVSEVSGTLRPGLTAFDALKATLPAGTVSGAPKIRAMER-IYELENE 389 (455)
T ss_pred hcCCCcEeECCcceeEEeCcEEEEEEEEEEEECCCCCHHHHHHHhCCCcccCCCCHHHHHHH-HHHhcCC
Confidence 35678888887666 3578999998765433 234578999888 9999997776 4445443
No 45
>TIGR01824 PabB-clade2 aminodeoxychorismate synthase, component I, clade 2. The sequences from Bacillus halodurans and subtilus which score below the trusted cutoff for this model are also likely to be PabB enzymes, but are too closely related to TrpE to be separated at this time.
Probab=21.32 E-value=1e+02 Score=26.37 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=41.9
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHHHh
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKEFA 136 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~f~ 136 (165)
-+..|++.+..-..+ ...+|.|.+.+.-.. +....++|+.++ |.|+..+.++ ++.+..+-
T Consensus 225 v~~~gsV~v~~~~~v~~~~~v~HL~S~V~g~L~~~~~~~dll~al~P~gsvtGaPK~~A~~~-I~~lE~~~ 294 (355)
T TIGR01824 225 VCATGTVRVPELCAVESYSHVHHLVSRVTGRLREGAGLADLIRALFPGGSITGAPKVRAMEI-IDELEPQP 294 (355)
T ss_pred cCCCCcEecCcceEEEEeCCEEEEEEEEEEEECCCCCHHHHHHHhCCCCccCCCcHHHHHHH-HHHhcCCC
Confidence 456788887776664 468899988765443 335678898888 9999997666 56655433
No 46
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.29 E-value=2.5e+02 Score=18.42 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhc-------CCCEEEEEecChHHHHHHHHHHHHHhc
Q 031139 122 DEAATIAISTVKEFAN-------DFKEVHFILFTDDIYNVWLKKAKELLQ 164 (165)
Q Consensus 122 ~~~A~~~l~~i~~f~~-------~~~~I~~V~~~~~~~~~f~~~~~~~~~ 164 (165)
.+-++.+++-+...++ .+-++.+-+-+.+.+..+.+..+++|+
T Consensus 31 ~~Q~~~~~~ni~~~L~~~g~~~~~iv~~~~yv~~~~~~~~~~~~~~~~~~ 80 (107)
T cd00448 31 EAQTRQALENLEAVLEAAGGSLDDVVKVTVYLTDMADFAAVNEVYDEFFG 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecHHHHHHHHHHHHHHhC
Confidence 3345555555555553 233444444557788999999988886
No 47
>PRK13573 anthranilate synthase component I; Provisional
Probab=21.23 E-value=1.2e+02 Score=27.36 Aligned_cols=55 Identities=25% Similarity=0.207 Sum_probs=39.4
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAIS 130 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~ 130 (165)
-++.|++.++.-..+ ...+|.|.+.+.-.. +...-++|+.|+ |.|+..|.+++-+
T Consensus 357 v~~~gsV~V~~~~~ve~~~~V~HLvS~V~g~L~~~~~~~d~l~a~fP~gsvtGaPK~rAm~iI~e 421 (503)
T PRK13573 357 VAKIGTVRPTEKFIIERYSHVMHIVSNVVGELAEGEDALSALLAGLPAGTVSGAPKVRAMEIIDE 421 (503)
T ss_pred cCCCCcEEeCCceEEEEcCcEEEEEeEEEEEECCCCCHHHHHHHcCCCCccCCchHHHHHHHHHH
Confidence 357888888877764 468999999775443 224568888888 9999987665443
No 48
>TIGR00565 trpE_proteo anthranilate synthase component I, proteobacterial subset. This enzyme resembles some other chorismate-binding enzymes, including para-aminobenzoate synthase (pabB) and isochorismate synthase. There is a fairly deep split between two sets, seen in the pattern of gaps as well as in amino acid sequence differences. This group includes proteobacteria such as E. coli and Helicobacter pylori but also the gram-positive organism Corynebacterium glutamicum. The second group includes eukaryotes, archaea, and most other bacterial lineages; sequences from the second group may resemble pabB more closely than other trpE from this group.
Probab=21.20 E-value=1.4e+02 Score=26.92 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=40.1
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKE 134 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~ 134 (165)
-+..|++.+..-..+ ...+|.|.+...-.. +.+.-.+|+.|+ |.|+..|.+++- .+..
T Consensus 359 vc~~gsV~V~~~~~ve~y~~V~HLvS~V~G~L~~~~~~~d~l~a~fP~gtvtGaPK~rAmeiI~-elE~ 426 (498)
T TIGR00565 359 VCTPGSRYVADLTKVDRYSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKIRAMQLIY-QAEG 426 (498)
T ss_pred hCCCCceEeccceeeeecCCEEEEEEEEEEEECCCCCHHHHHHHhCCCCCCCCCcHHHHHHHHH-HhcC
Confidence 467888888765543 467999998765443 234568888888 999999766543 3443
No 49
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.86 E-value=2.6e+02 Score=20.71 Aligned_cols=34 Identities=6% Similarity=0.163 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCEEEEEecChHHHHHHHHHHHHH
Q 031139 129 ISTVKEFANDFKEVHFILFTDDIYNVWLKKAKEL 162 (165)
Q Consensus 129 l~~i~~f~~~~~~I~~V~~~~~~~~~f~~~~~~~ 162 (165)
++.+++|+.+-+++.++.++++-+.+-.+.|.++
T Consensus 26 ve~ireyi~sA~r~vV~t~N~~K~~aindvlrrf 59 (156)
T COG4019 26 VEKIREYIVSAKRIVVATNNQKKFKAINDVLRRF 59 (156)
T ss_pred HHHHHHHHhccceEEEecCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999888887777654
No 50
>PRK13564 anthranilate synthase component I; Provisional
Probab=20.71 E-value=1.4e+02 Score=27.10 Aligned_cols=58 Identities=24% Similarity=0.340 Sum_probs=40.9
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKE 134 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~ 134 (165)
-+..|++.++.-..+ ...+|.|.+.+.... +...-.+|+.|+ |.|+..+.+++ +.+..
T Consensus 376 vc~~gsV~V~~l~~ve~y~~V~HLvS~V~g~L~~~~~~~d~l~a~fP~gsvtGaPK~rAmeiI-~elE~ 443 (520)
T PRK13564 376 ICQPGSRYVADLLKVDRYSHVMHLVSRVVGELRHDLDALHAYRACMNMGTLTGAPKVRAMQLI-REVEG 443 (520)
T ss_pred hcCCCCEEcccceeeeecCceEEEEeEEEEEECCCCCHHHHHHHhCCCCccCCCchHHHHHHH-HHhcC
Confidence 467888888776553 468999999876543 334568888887 99999976654 34443
No 51
>PF02807 ATP-gua_PtransN: ATP:guanido phosphotransferase, N-terminal domain; InterPro: IPR022413 This entry represents the N-terminal domain of ATP:guanido phosphotransferase, which has an all-alpha fold consisting of an irregular array of 6 short helices []. ATP:guanido phosphotransferases are a family of structurally and functionally related enzymes [, ] that reversibly catalyse the transfer of phosphate between ATP and various phosphogens. The enzymes belonging to this family include: Glycocyamine kinase (2.7.3.1 from EC), which catalyses the transfer of phosphate from ATP to guanidoacetate. Arginine kinase (2.7.3.3 from EC), which catalyses the transfer of phosphate from ATP to arginine. Taurocyamine kinase (2.7.3.4 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to taurocyamine. Lombricine kinase (2.7.3.5 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to lombricine. Smc74, a cercaria-specific enzyme from Schistosoma mansoni []. Creatine kinase (2.7.3.2 from EC) (CK) [, ], which catalyses the reversible transfer of high energy phosphate from ATP to creatine, generating phosphocreatine and ADP. Creatine kinase plays an important role in energy metabolism of vertebrates. There are at least four different, but very closely related, forms of CK. Two isozymes, M (muscle) and B (brain), are cytosolic, while the other two are mitochondrial. In sea urchins there is a flagellar isozyme, which consists of the triplication of a CK-domain. A cysteine residue is implicated in the catalytic activity of these enzymes and the region around this active site residue is highly conserved.; GO: 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 1U6R_B 2CRK_A 2J1Q_A 1QH4_C 1QK1_F 2GL6_F 3L2F_M 3L2D_D 3L2G_B 3L2E_B ....
Probab=20.63 E-value=77 Score=21.01 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=25.6
Q ss_pred cCChHHHHHHHHHHHHHHhcCCCEEEEEecChHHHHHHHHHHHHHhc
Q 031139 118 KYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELLQ 164 (165)
Q Consensus 118 g~p~~~~A~~~l~~i~~f~~~~~~I~~V~~~~~~~~~f~~~~~~~~~ 164 (165)
|+..++|.+.-++- .=..|-++.-+++.|..|.+.|..+++
T Consensus 30 g~tl~~~I~~gv~n------p~~~vG~~AgD~esY~vF~~lfdpvI~ 70 (76)
T PF02807_consen 30 GFTLDDCIQSGVDN------PGSGVGIYAGDEESYDVFKELFDPVIE 70 (76)
T ss_dssp S-BHHHHHHHHHHT------SCCBS----SSTTHHHHTHHHHHHHHH
T ss_pred CCcHHHHHHHhhcc------cccccceeecChhHHHHHHHHHHHHHH
Confidence 66666665554432 116789999999999999999887654
No 52
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=20.44 E-value=2e+02 Score=20.19 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=6.5
Q ss_pred CChHHHHHHHHHHHHHHh
Q 031139 119 YPPDEAATIAISTVKEFA 136 (165)
Q Consensus 119 ~p~~~~A~~~l~~i~~f~ 136 (165)
+++++..+...+.+.+.+
T Consensus 35 ~~~~~~~~~~~~~l~~~i 52 (116)
T TIGR00824 35 FVPGENAETLQEKYNAAL 52 (116)
T ss_pred cCCCcCHHHHHHHHHHHH
Confidence 333333333333333333
No 53
>PRK13572 anthranilate synthase component I; Provisional
Probab=20.03 E-value=1.4e+02 Score=26.30 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=40.4
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAISTVKE 134 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l~~i~~ 134 (165)
-+..|++.++.-..+ ...+|.|.+.+.-.. +....++|+.|+ |.|+..|.+++- .+..
T Consensus 298 vc~~gsV~v~~~~~v~~~~~V~HL~S~V~g~L~~~~~~~dll~a~fP~gsvtGaPK~~A~~iI~-elE~ 365 (435)
T PRK13572 298 VSKSGSVRLERFFDVVKYSHVQHIESEVVGELKEDSTMFDAIEAAFPAGTLTGAPKFRAMEIID-ELEK 365 (435)
T ss_pred hcCCCcEEECCcceEEEcCceEEEEEEEEEEECCCCCHHHHHHHhCCCCcCCCCcHHHHHHHHH-HhcC
Confidence 456788888776543 467899998765443 335578999888 999988766554 4443
Done!