Query 031139
Match_columns 165
No_of_seqs 107 out of 1141
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:29:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q6z_A Poly [ADP-ribose] polym 100.0 8.7E-42 3E-46 269.3 16.8 152 7-164 30-214 (214)
2 3q71_A Poly [ADP-ribose] polym 100.0 5E-41 1.7E-45 265.9 18.8 151 8-165 33-217 (221)
3 1spv_A Putative polyprotein/ph 100.0 3.8E-40 1.3E-44 254.6 17.7 146 13-164 2-176 (184)
4 2xd7_A Core histone macro-H2A. 100.0 4E-40 1.4E-44 256.2 17.5 148 7-161 12-192 (193)
5 1yd9_A Core histone macro-H2A. 100.0 5.6E-40 1.9E-44 255.4 17.2 150 8-164 13-192 (193)
6 4abl_A Poly [ADP-ribose] polym 100.0 6.4E-39 2.2E-43 247.5 16.2 140 12-162 20-181 (183)
7 2x47_A Macro domain-containing 100.0 1.1E-38 3.8E-43 254.7 17.9 143 12-164 60-233 (235)
8 3eti_A X (ADRP) domain, macro 100.0 4.9E-39 1.7E-43 245.1 11.0 136 12-160 8-167 (168)
9 3kh6_A Poly [ADP-ribose] polym 100.0 2.1E-36 7.1E-41 236.1 16.5 136 12-162 31-192 (199)
10 1vhu_A Hypothetical protein AF 100.0 7.9E-37 2.7E-41 240.6 13.7 146 12-165 19-203 (211)
11 2dx6_A Hypothetical protein TT 100.0 2.3E-36 7.8E-41 228.3 14.3 133 14-159 2-159 (159)
12 2acf_A Replicase polyprotein 1 100.0 2.6E-36 8.8E-41 232.7 12.3 144 4-164 8-176 (182)
13 3ejg_A Non-structural protein 100.0 2.1E-36 7.2E-41 234.6 11.8 133 12-160 36-192 (193)
14 3ejf_A Non-structural protein 100.0 7.1E-35 2.4E-39 223.3 13.8 142 7-159 7-175 (176)
15 2vri_A Non-structural protein 100.0 1.2E-34 4.1E-39 222.1 10.5 139 12-162 15-173 (174)
16 3gpg_A NSP3, non-structural pr 100.0 2.7E-34 9.1E-39 218.8 10.5 130 13-161 9-166 (168)
17 3gqe_A Non-structural protein 100.0 1.8E-33 6.1E-38 214.3 13.1 131 13-161 3-160 (168)
18 1njr_A 32.1 kDa protein in ADH 100.0 4.2E-29 1.4E-33 203.9 11.6 135 12-149 43-237 (284)
19 4gua_A Non-structural polyprot 99.9 3.8E-27 1.3E-31 204.3 12.6 128 14-160 344-499 (670)
20 2jyc_A Uncharacterized protein 99.9 1.1E-21 3.7E-26 148.2 10.8 117 10-147 16-158 (160)
21 2eee_A Uncharacterized protein 99.8 4.4E-21 1.5E-25 143.2 10.7 116 12-148 7-148 (149)
22 2fg1_A Conserved hypothetical 99.8 2.3E-20 7.8E-25 140.4 9.2 114 11-133 1-147 (158)
23 3sig_A PArg, poly(ADP-ribose) 96.7 0.0012 4.2E-08 53.3 4.0 44 118-161 226-276 (277)
24 4hc4_A Protein arginine N-meth 33.4 34 0.0012 28.2 3.5 40 14-53 132-171 (376)
25 4gqb_A Protein arginine N-meth 30.6 21 0.0007 31.8 1.8 27 13-39 410-436 (637)
26 3ius_A Uncharacterized conserv 24.8 1.2E+02 0.0041 22.5 5.2 28 14-42 47-74 (286)
27 1qdl_A Protein (anthranilate s 20.1 37 0.0013 28.5 1.4 54 76-129 285-348 (422)
No 1
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=8.7e-42 Score=269.29 Aligned_cols=152 Identities=32% Similarity=0.438 Sum_probs=139.5
Q ss_pred eeecCCCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEcc
Q 031139 7 TLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITP 86 (165)
Q Consensus 7 ~~~~~~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~ 86 (165)
.+.+++|.+|.+++||||++++ |||||++|+.|.++|||++||+++||++|++||+++.+.+ +++++|++++|+
T Consensus 30 ~~~~~~g~~I~v~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~iT~ 103 (214)
T 3q6z_A 30 RTVLAPGVVLIVQQGDLARLPV----DVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKRE--GRLLPGNATISK 103 (214)
T ss_dssp EEEEETTEEEEEEECCTTSCSS----SEEEEEECTTCCCCSHHHHHHHHHHCTHHHHHHHHHHHHH--CCCCTTCEEEEE
T ss_pred EEEcCCCcEEEEEecccccCcC----CEEEeCCCCCCCCCchHHHHHHHhhhHHHHHHHHHHHHHc--CCCCCCeEEEEc
Confidence 5677899999999999999987 9999999999999999999999999999999999986433 589999999999
Q ss_pred CCCCCCceEEEecCCCcCCCCC--HHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc--
Q 031139 87 GFKLPVSHVIHTVGPVFNFHCN--PEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN-- 137 (165)
Q Consensus 87 ~~~L~~k~IiH~v~P~~~~~~~--~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~-- 137 (165)
+|+||||||||+|||.|+.+.. +.++|++|| |||++++|++|++++++|++
T Consensus 104 ~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~ 183 (214)
T 3q6z_A 104 AGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK 183 (214)
T ss_dssp CTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSC
T ss_pred CCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988652 457898888 99999999999999999994
Q ss_pred ----CCCEEEEEecChHHHHHHHHHHHHHhc
Q 031139 138 ----DFKEVHFILFTDDIYNVWLKKAKELLQ 164 (165)
Q Consensus 138 ----~~~~I~~V~~~~~~~~~f~~~~~~~~~ 164 (165)
++++|+||+|+++++++|.++++++|.
T Consensus 184 ~~~~~l~~V~fv~~d~~~~~~f~~~l~~~f~ 214 (214)
T 3q6z_A 184 KDGHCLKEIYLVDVSEKTVEAFAEAVKTVFK 214 (214)
T ss_dssp C--CCCCEEEEEESSHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCEEEEEeCCHHHHHHHHHHHHHhhC
Confidence 478999999999999999999999984
No 2
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=5e-41 Score=265.91 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=136.4
Q ss_pred eecCCCceEEEEEcccceeeccCCCcEEEecCCCCC-CCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEcc
Q 031139 8 LSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEIL-LLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITP 86 (165)
Q Consensus 8 ~~~~~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l-~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~ 86 (165)
+...+|.+|.|++||||++++ |||||++|+.| .++|||++||+++||++|++||+++.. ++++++|++++|+
T Consensus 33 ~~t~~g~~I~i~~GDIt~~~v----DAIVNaAN~~l~~~gGGV~~AI~~aaG~~L~~ec~~~~~---~~~~~~G~a~iT~ 105 (221)
T 3q71_A 33 LVSPGGLQMLLVKEGVQNAKT----DVVVNSVPLDLVLSRGPLSKSLLEKAGPELQEELDTVGQ---GVAVSMGTVLKTS 105 (221)
T ss_dssp EECTTCCEEEEEESCGGGCCS----SEEEEECCTTCCTTSSHHHHHHHHHHCTHHHHHHHHHHH---TSCCCTTCEEEEE
T ss_pred eeecCCcEEEEEeCcccCCcC----CEEEECCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHhc---cCCCCCCeEEEEc
Confidence 346689999999999999987 99999999999 578999999999999999999999863 3689999999999
Q ss_pred CCCCCCceEEEecCCCcCCCCC-HHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc---
Q 031139 87 GFKLPVSHVIHTVGPVFNFHCN-PEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN--- 137 (165)
Q Consensus 87 ~~~L~~k~IiH~v~P~~~~~~~-~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~--- 137 (165)
+|+||||||||+|||.|+.+.. +.++|++|| |||++++|++|++++++|++
T Consensus 106 g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~ 185 (221)
T 3q71_A 106 SWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQ 185 (221)
T ss_dssp CTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998653 468888888 89999999999999999994
Q ss_pred --CCCEEEEEecCh--HHHHHHHHHHHHHhcC
Q 031139 138 --DFKEVHFILFTD--DIYNVWLKKAKELLQG 165 (165)
Q Consensus 138 --~~~~I~~V~~~~--~~~~~f~~~~~~~~~~ 165 (165)
++++|+||+|++ +++++|.++|++.|+|
T Consensus 186 ~~~l~~V~fv~f~~d~~~~~~f~~~l~~r~~~ 217 (221)
T 3q71_A 186 LKTLQEVHFLLHPSDHENIQAFSDEFARRANG 217 (221)
T ss_dssp CSSCCEEEEEECTTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHHccC
Confidence 578999999965 4789999999999875
No 3
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=3.8e-40 Score=254.61 Aligned_cols=146 Identities=38% Similarity=0.599 Sum_probs=133.2
Q ss_pred CceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 031139 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (165)
Q Consensus 13 ~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~ 92 (165)
+.+|++++||||++.+ |||||++|+.|.++|||++||+++||++|++||+++.+.. +++++|++++|++|+|||
T Consensus 2 ~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~e~~~~~~~~--g~~~~G~a~iT~~~~L~~ 75 (184)
T 1spv_A 2 KTRIHVVQGDITKLAV----DVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQ--GDCPTGHAVITLAGDLPA 75 (184)
T ss_dssp -CCEEEEESCGGGCCC----SEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHHHHHHH--CSCCTTCEEEECCTTSSS
T ss_pred CCeEEEEeCcCCcCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHhc--CCCCCCCEEEeeCCCCCC
Confidence 4679999999999987 9999999999999999999999999999999999986432 599999999999999999
Q ss_pred ceEEEecCCCcCCCC-CHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc---CCCEEE
Q 031139 93 SHVIHTVGPVFNFHC-NPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN---DFKEVH 143 (165)
Q Consensus 93 k~IiH~v~P~~~~~~-~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~---~~~~I~ 143 (165)
+||||+|||.|+.+. .+.++|++|| |||++++|++|++++++|++ .+++|+
T Consensus 76 k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~~V~ 155 (184)
T 1spv_A 76 KAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVY 155 (184)
T ss_dssp SEEEEECCCCCSSSSSSHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCSSSEEE
T ss_pred CEEEEEcCCcccCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 999999999998765 4678888888 99999999999999999996 578999
Q ss_pred EEecChHHHHHHHHHHHHHhc
Q 031139 144 FILFTDDIYNVWLKKAKELLQ 164 (165)
Q Consensus 144 ~V~~~~~~~~~f~~~~~~~~~ 164 (165)
||+|+++++++|.+.|+++|+
T Consensus 156 ~v~~~~~~~~~~~~~l~~~~~ 176 (184)
T 1spv_A 156 FVCYDEENAHLYERLLTQQGD 176 (184)
T ss_dssp EEESSHHHHHHHHHHHHCC--
T ss_pred EEECCHHHHHHHHHHHHHhCC
Confidence 999999999999999999886
No 4
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=256.24 Aligned_cols=148 Identities=22% Similarity=0.347 Sum_probs=135.5
Q ss_pred eeecCCCceEEEEEccccee---eccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEE
Q 031139 7 TLSFSTKTSLKISKGDISRW---CVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEAR 83 (165)
Q Consensus 7 ~~~~~~~~~i~i~~GdIt~~---~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~ 83 (165)
+-++..|.+|++++||||++ .+ |||||++|+.|.++|||++||+++||++|++||+++.+++ +++++|+++
T Consensus 12 ~~~~~~~~~i~i~~GDIt~~~~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~ 85 (193)
T 2xd7_A 12 SKSLVLGQKLSLTQSDISHIGSMRV----EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQ--GPLEVAEAA 85 (193)
T ss_dssp EEECTTSCEEEEEECCGGGGGGCCC----SEEEEEECTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCTTCEE
T ss_pred ccccCCCCEEEEEeCcccccCCCCC----CEEEECCCccCCCccHHHHHHHHHhhHHHHHHHHHHHHHc--CCCCCCCeE
Confidence 34556899999999999999 76 9999999999999999999999999999999999987543 589999999
Q ss_pred EccCCCCCCceEEEecCCCcCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc-
Q 031139 84 ITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN- 137 (165)
Q Consensus 84 vT~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~- 137 (165)
+|++|+|+|+||||+|||.|+.+ .+.++|++|| |||++++|++|++++++|++
T Consensus 86 iT~~~~L~~k~VIH~vgP~~~~~-~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~ 164 (193)
T 2xd7_A 86 VSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDD 164 (193)
T ss_dssp EEECTTSSSSEEEEEECCCTTST-THHHHHHHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCCCCCCEEEEECCCcCCCc-chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999764 5678888888 99999999999999999984
Q ss_pred ----CCCEEEEEecChHHHHHHHHHHHH
Q 031139 138 ----DFKEVHFILFTDDIYNVWLKKAKE 161 (165)
Q Consensus 138 ----~~~~I~~V~~~~~~~~~f~~~~~~ 161 (165)
++++|+||+|+++++++|.+.|.+
T Consensus 165 ~~~~~l~~V~fv~~~~~~~~~~~~~l~~ 192 (193)
T 2xd7_A 165 SSASSLKNVYFLLFDSESIGIYVQEMAK 192 (193)
T ss_dssp CSSCCCCEEEEEECSHHHHHHHHHHHHC
T ss_pred cCCCCCCEEEEEECCHHHHHHHHHHHhh
Confidence 488999999999999999999875
No 5
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=5.6e-40 Score=255.45 Aligned_cols=150 Identities=23% Similarity=0.411 Sum_probs=136.9
Q ss_pred eecCCCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccC
Q 031139 8 LSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPG 87 (165)
Q Consensus 8 ~~~~~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~ 87 (165)
.++..|.+|+|++||||++++ |||||++|+.|.++|||++||+++||++|++||+++.+++ +++++|++++|++
T Consensus 13 ~~~~~~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGv~~aI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~iT~~ 86 (193)
T 1yd9_A 13 KSLFLGQKLQVVQADIASIDS----DAVVHPTNTDFYIGGEVGSTLEKKGGKEFVEAVLELRKKN--GPLEVAGAAVSAG 86 (193)
T ss_dssp EECTTSCEEEEECSCGGGCCC----SEEEEECCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH--CSCCTTCEEEEEC
T ss_pred cCcCCCCEEEEEeCccCcCcC----CEEEECCCccCCCCchHHHHHHHHhhHHHHHHHHHHHHHc--CCCCCCCEEEecC
Confidence 456679999999999999987 9999999999999999999999999999999999886542 5899999999999
Q ss_pred CCCCCceEEEecCCCcCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc-----
Q 031139 88 FKLPVSHVIHTVGPVFNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN----- 137 (165)
Q Consensus 88 ~~L~~k~IiH~v~P~~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~----- 137 (165)
|+|||+||||+|||.|+. ..+.++|++|| |||++++|++|++++++|++
T Consensus 87 ~~L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~ 165 (193)
T 1yd9_A 87 HGLPAKFVIHCNSPVWGS-DKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSS 165 (193)
T ss_dssp TTSSSSEEEEECCCCTTS-TTHHHHHHHHHHHHHHHHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTC
T ss_pred CCCCCCEEEEeCCCCcCC-cchHHHHHHHHHHHHHHHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999975 35678888888 99999999999999999985
Q ss_pred CCCEEEEEecChHHHHHHHHHHHHHhc
Q 031139 138 DFKEVHFILFTDDIYNVWLKKAKELLQ 164 (165)
Q Consensus 138 ~~~~I~~V~~~~~~~~~f~~~~~~~~~ 164 (165)
.+++|+||+|+++++++|.+.|+++..
T Consensus 166 ~l~~V~fv~~~~~~~~~~~~~l~~~~~ 192 (193)
T 1yd9_A 166 SIKTVYFVLFDSESIGIYVQEMAKLDA 192 (193)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTTC
T ss_pred CcCEEEEEECCHHHHHHHHHHHHhhhc
Confidence 478999999999999999999987654
No 6
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=100.00 E-value=6.4e-39 Score=247.53 Aligned_cols=140 Identities=24% Similarity=0.372 Sum_probs=123.4
Q ss_pred CCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCC
Q 031139 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 91 (165)
Q Consensus 12 ~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~ 91 (165)
++.+|++++||||++++ |||||++|+.|.+++||++||+++||++|++||+++. ++++|++++|++|+|+
T Consensus 20 g~~~i~i~~GDIt~~~~----DaIVNaaN~~l~~ggGV~~aI~~aaG~~l~~ec~~~~------~~~~G~a~iT~~~~L~ 89 (183)
T 4abl_A 20 GSIIFQVASGDITKEEA----DVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQQA------QQRKNDYIITGGGFLR 89 (183)
T ss_dssp TTEEEEEEESCGGGCBC----SEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHH------HHSCCSEEEEECTTSB
T ss_pred CCEEEEEEeCcccCccc----CEEEECCCCCCCCCccHHHHHHHHhhHHHHHHHHHhc------CCCCCceEEecCCCCC
Confidence 78999999999999987 9999999999999999999999999999999999886 7899999999999999
Q ss_pred CceEEEecCCCcCCCCCHHHHHHHhh-----------------cCChHHHHHHHHHHHHHHhc-----CCCEEEEEecCh
Q 031139 92 VSHVIHTVGPVFNFHCNPEDILRSAY-----------------KYPPDEAATIAISTVKEFAN-----DFKEVHFILFTD 149 (165)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L~~c~-----------------g~p~~~~A~~~l~~i~~f~~-----~~~~I~~V~~~~ 149 (165)
|+||||+|||.|-. ..-+..|+.|. |||++++|++|++++++|++ ++++|+||+|++
T Consensus 90 ~k~VIH~vgP~~L~-~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~ 168 (183)
T 4abl_A 90 CKNIIHVIGGNDVK-SSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLP 168 (183)
T ss_dssp SSEEEEEETTSCHH-HHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEEEESCH
T ss_pred CCEEEEeCcHHHHH-HHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCH
Confidence 99999999998710 00012222221 99999999999999999995 578999999999
Q ss_pred HHHHHHHHHHHHH
Q 031139 150 DIYNVWLKKAKEL 162 (165)
Q Consensus 150 ~~~~~f~~~~~~~ 162 (165)
+++++|.++|++.
T Consensus 169 ~~~~~f~~~l~kr 181 (183)
T 4abl_A 169 QVLDVFYANMKKR 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999984
No 7
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=254.74 Aligned_cols=143 Identities=33% Similarity=0.566 Sum_probs=133.0
Q ss_pred CCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCC
Q 031139 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 91 (165)
Q Consensus 12 ~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~ 91 (165)
.|.+|.|++||||++.+ |||||++|+.|.++|||++||+++||++|++||+++. ++++|++++|++|+|+
T Consensus 60 ~~~~i~i~~GDIt~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~g------~~~~G~a~iT~~~~L~ 129 (235)
T 2x47_A 60 LNEKISLLRSDITKLEV----DAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQ------SCKTGKAKITGGYRLP 129 (235)
T ss_dssp HHTTEEEEESCGGGEES----SEEEEECCTTCSCCSHHHHHHHHHHCHHHHHHHHTSC------CCCBTCEEEEECTTSS
T ss_pred cCCEEEEEeCccCcccC----CEEEEecCcccCCccHHHHHHHHHhCHHHHHHHHHhC------CCCCCceEEecCCCCC
Confidence 47789999999999987 9999999999999999999999999999999998763 8999999999999999
Q ss_pred CceEEEecCCCcCCCC--CHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc----CCC
Q 031139 92 VSHVIHTVGPVFNFHC--NPEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN----DFK 140 (165)
Q Consensus 92 ~k~IiH~v~P~~~~~~--~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~----~~~ 140 (165)
|+||||+|||.|+.+. .+.++|++|| |||++++|++|++++++|++ .++
T Consensus 130 ~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~l~ 209 (235)
T 2x47_A 130 AKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVD 209 (235)
T ss_dssp SSEEEEEBCCCCTTCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGGGCS
T ss_pred CCEEEEecCccccCCCCcchHHHHHHHHHHHHHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 9999999999997643 3568888888 99999999999999999995 489
Q ss_pred EEEEEecChHHHHHHHHHHHHHhc
Q 031139 141 EVHFILFTDDIYNVWLKKAKELLQ 164 (165)
Q Consensus 141 ~I~~V~~~~~~~~~f~~~~~~~~~ 164 (165)
+|+||+|+++.+++|.+.|+.||+
T Consensus 210 ~V~fv~f~~~~~~~y~~~l~~~fp 233 (235)
T 2x47_A 210 RLIICVFLEKDEDIYRSRLPHYFP 233 (235)
T ss_dssp EEEEEECSHHHHHHHHHHHHHHSC
T ss_pred eEEEEECCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 8
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=100.00 E-value=4.9e-39 Score=245.06 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=124.9
Q ss_pred CCceEEEEEcccce----eeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccC
Q 031139 12 TKTSLKISKGDISR----WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPG 87 (165)
Q Consensus 12 ~~~~i~i~~GdIt~----~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~ 87 (165)
...+|++++||||+ +++ |||||+||++|.++|||++||+++||++|++||+++++++ +++++|++++|++
T Consensus 8 ~~~~i~l~~GDIt~~~~~~~v----DaIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~iT~g 81 (168)
T 3eti_A 8 KAGKVSFYQGDLDVLINFLEP----DVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSS--KAIAPGNAVLFEN 81 (168)
T ss_dssp EETTEEEEESCHHHHHHHHCC----SEEEEEECTTCCCCSTTHHHHHHHTTTHHHHHHHHHHTTS--CCCCTTEEEEEEE
T ss_pred CCCeEEEEeCcccccCCCCCC----CEEEeCCCcccCCCchHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCEEEecC
Confidence 34679999999999 776 9999999999999999999999999999999999987543 6999999999999
Q ss_pred CCCCCceEEEecCCCcCCCCCHHHHHHHhh--------------------cCChHHHHHHHHHHHHHHhcCCCEEEEEec
Q 031139 88 FKLPVSHVIHTVGPVFNFHCNPEDILRSAY--------------------KYPPDEAATIAISTVKEFANDFKEVHFILF 147 (165)
Q Consensus 88 ~~L~~k~IiH~v~P~~~~~~~~~~~L~~c~--------------------g~p~~~~A~~~l~~i~~f~~~~~~I~~V~~ 147 (165)
| |+|+||||+|||.|+. .+++++|++|| |||++++|++|++++++ ++|+||+|
T Consensus 82 ~-l~~~~VIHtVgP~~~~-~~~~~~L~~~y~~~L~~~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-----~~V~~v~f 154 (168)
T 3eti_A 82 V-LEHLSVMNAVGPRNGD-SRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTD-----RDLNVFVY 154 (168)
T ss_dssp E-ETTEEEEEEECCCTTS-TTHHHHHHHHHHHHHTSCSCEEECCTTBSTTCBCHHHHHHHHHHHCCS-----SCEEEEEC
T ss_pred C-CCccEEEEecCCCCCc-chHHHHHHHHHHHHHHhcCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEEEEEc
Confidence 9 9999999999999976 35688999998 99999999999999987 89999999
Q ss_pred ChHHHHHHHHHHH
Q 031139 148 TDDIYNVWLKKAK 160 (165)
Q Consensus 148 ~~~~~~~f~~~~~ 160 (165)
+++.+++|++.+.
T Consensus 155 ~~~~~~~~~~~l~ 167 (168)
T 3eti_A 155 TDQERVTIENFFN 167 (168)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc
Confidence 9999999988764
No 9
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=100.00 E-value=2.1e-36 Score=236.10 Aligned_cols=136 Identities=24% Similarity=0.350 Sum_probs=123.1
Q ss_pred CCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCC
Q 031139 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 91 (165)
Q Consensus 12 ~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~ 91 (165)
++.+|++++||||++++ |||||++|+.|.+++||++||+++||++|++||+++. ++++|++++|++|+|+
T Consensus 31 ~~~~i~i~~GDIt~~~v----DaIVNaaN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~------~~~~G~a~iT~g~~L~ 100 (199)
T 3kh6_A 31 GAITFQVATGDIATEQV----DVIVNSTARTFNRKSGVSRAILEGAGQAVESECAVLA------AQPHRDFIITPGGCLK 100 (199)
T ss_dssp TTEEEEEEESCGGGCCS----SEEEEEECTTSCCCSTHHHHHHHHHCHHHHHHHHHHH------TSCCCSSEEEECTTSS
T ss_pred CCEEEEEEecccccCcC----CEEEECCCCCCCCCchHHHHHHHHhhHHHHHHHHHhC------CCCCCeEEEecCCCCC
Confidence 78999999999999977 9999999999999999999999999999999999975 7899999999999999
Q ss_pred CceEEEecCCCcCCCCCHHHHHHHhh---------------------cCChHHHHHHHHHHHHHHhc-----CCCEEEEE
Q 031139 92 VSHVIHTVGPVFNFHCNPEDILRSAY---------------------KYPPDEAATIAISTVKEFAN-----DFKEVHFI 145 (165)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L~~c~---------------------g~p~~~~A~~~l~~i~~f~~-----~~~~I~~V 145 (165)
|+||||++||.+ .+..+++|+ |||++++|++|++++++|++ ++++|+||
T Consensus 101 ~k~VIH~vgp~~-----L~~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv 175 (199)
T 3kh6_A 101 CKIIIHVPGGKD-----VRKTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQHSTPSLKTVKVV 175 (199)
T ss_dssp SSEEEEEETTSC-----HHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCSSCSCCEEEEE
T ss_pred CCEEEEeCCCHH-----HHHHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 999999999953 223333332 99999999999999999995 47899999
Q ss_pred ecChHHHHHHHHHHHHH
Q 031139 146 LFTDDIYNVWLKKAKEL 162 (165)
Q Consensus 146 ~~~~~~~~~f~~~~~~~ 162 (165)
+|+++++++|.++|++.
T Consensus 176 ~f~~~~~~~f~~~l~~~ 192 (199)
T 3kh6_A 176 IFQPELLNIFYDSMKKR 192 (199)
T ss_dssp ESSTHHHHHHHHHHHTT
T ss_pred ECCHHHHHHHHHHHHhc
Confidence 99999999999999875
No 10
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=100.00 E-value=7.9e-37 Score=240.61 Aligned_cols=146 Identities=29% Similarity=0.390 Sum_probs=132.7
Q ss_pred CCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhC----hHHHHHHhhccccCCCCC--CCCCcEEEc
Q 031139 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAG----PDLQKACYQIPEAQPRVR--CPPGEARIT 85 (165)
Q Consensus 12 ~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG----~~l~~e~~~~~~~~~~~~--~~~G~~~vT 85 (165)
++++|++++||||++.+ |||||++|+.|.++|||++||+++|| +++++||+++.++. ++ +++|++++|
T Consensus 19 ~~~~i~i~~GDIt~~~v----DaIVNaaN~~l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~~--g~~~~~~G~a~iT 92 (211)
T 1vhu_A 19 GDITLKLAQGDITQYPA----KAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQF--GRDYIDHGEVVVT 92 (211)
T ss_dssp TTEEEEEEESCGGGSCC----SEEEEEECTTCCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHH--SSSCCCTTCCEEE
T ss_pred CCEEEEEEecccCcCCC----CEEEECCCccccCccHHHHHHHHHhCCCchHHHHHHHHHHHHHc--CCCcccCCcEEEE
Confidence 78899999999999977 99999999999999999999999999 99999999976533 35 999999999
Q ss_pred cCCCCCC---ceEEEecCC----CcCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHH
Q 031139 86 PGFKLPV---SHVIHTVGP----VFNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVK 133 (165)
Q Consensus 86 ~~~~L~~---k~IiH~v~P----~~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~ 133 (165)
++|+||| +||||+||| .|+. ...+.|++|| |||++++|++|+++++
T Consensus 93 ~~~~L~~~g~k~VIH~vgP~~~~~~~~--~~~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~ 170 (211)
T 1vhu_A 93 PAMNLEERGIKYVFHTVGPICSGMWSE--ELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVK 170 (211)
T ss_dssp ECGGGGGGTCCEEEEEECCCCTTCCCH--HHHHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHH
T ss_pred ECCCCCccCcCEEEEecCCccccccCc--chHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999999 999999999 9954 4567888887 9999999999999999
Q ss_pred HHhc-CCCEEEEEecChHHHHHHHHHHHHHhcC
Q 031139 134 EFAN-DFKEVHFILFTDDIYNVWLKKAKELLQG 165 (165)
Q Consensus 134 ~f~~-~~~~I~~V~~~~~~~~~f~~~~~~~~~~ 165 (165)
+|++ ++++|+||+|+++++++|.+.|++++.|
T Consensus 171 ~~l~~~l~~V~~v~~~~~~~~~~~~~l~~~~~~ 203 (211)
T 1vhu_A 171 NFKGSAVKEVALVIYDRKSAEVALKVFERSLEG 203 (211)
T ss_dssp HCCCSSCCEEEEEESSHHHHHHHHHHHHHHC--
T ss_pred HHHhCCCCEEEEEECCHHHHHHHHHHHHHhhcc
Confidence 9994 3789999999999999999999998765
No 11
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=100.00 E-value=2.3e-36 Score=228.32 Aligned_cols=133 Identities=28% Similarity=0.379 Sum_probs=123.0
Q ss_pred ceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCc
Q 031139 14 TSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVS 93 (165)
Q Consensus 14 ~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~k 93 (165)
++|++++||||++++ |||||++|+.+.++||++++|++++|++++++|++.. ++++|++++|++++|+|+
T Consensus 2 ~~i~i~~GDI~~~~~----daIVnaaN~~l~~ggGv~~aI~~~~G~~l~~~c~~~g------~~~~G~a~it~~~~L~~~ 71 (159)
T 2dx6_A 2 ARIRVVQGDITEFQG----DAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG------KIRVGEAAVTGAGNLPVR 71 (159)
T ss_dssp CEEEEEESCGGGCCS----SEEEEEEETTCCCCSTTHHHHHHHHCTHHHHHHHHHC------CCCTTCEEEEECTTSSSS
T ss_pred eEEEEEECcCCcCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHhcC------CCCCCcEEEecCCCCCCC
Confidence 378999999999976 9999999999999999999999999999999999853 899999999999999999
Q ss_pred eEEEecCCCcCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 031139 94 HVIHTVGPVFNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVKEFANDFKEVHFILFT 148 (165)
Q Consensus 94 ~IiH~v~P~~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~~~~~I~~V~~~ 148 (165)
||||++||.|+ . ...+.|++|| |||++++|++|++++.+| +++++|+||+|+
T Consensus 72 ~Vih~vgp~~~-~-~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-~~~~~V~~v~~~ 148 (159)
T 2dx6_A 72 YVIHAAVLGDE-P-ASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-PDTLEVTLYGYR 148 (159)
T ss_dssp EEEEEEEESSS-C-CCHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-CTTCEEEEEESS
T ss_pred EEEEEeCCCCC-C-chHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEECC
Confidence 99999999998 2 3467788777 999999999999999999 888999999999
Q ss_pred hHHHHHHHHHH
Q 031139 149 DDIYNVWLKKA 159 (165)
Q Consensus 149 ~~~~~~f~~~~ 159 (165)
++++++|.+.+
T Consensus 149 ~~~~~~~~~~l 159 (159)
T 2dx6_A 149 EEDAEAIRRAL 159 (159)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 12
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=100.00 E-value=2.6e-36 Score=232.73 Aligned_cols=144 Identities=22% Similarity=0.261 Sum_probs=124.3
Q ss_pred ccceeecC--CCceEEEEEccccee----eccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCC
Q 031139 4 KVQTLSFS--TKTSLKISKGDISRW----CVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRC 77 (165)
Q Consensus 4 ~~~~~~~~--~~~~i~i~~GdIt~~----~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~ 77 (165)
|+..|... .+.+|+|++||||++ ++ |||||++|+.|.++|||++||+++||++|++||+++.++. |++
T Consensus 8 ~~~~~~~~~~~~~~i~i~~GDIt~~~~~~~v----DAIVNaAN~~l~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~ 81 (182)
T 2acf_A 8 PVNQFTGYLKLTDNVAIKCVDIVKEAQSANP----MVIVNAANIHLKHGGGVAGALNKATNGAMQKESDDYIKLN--GPL 81 (182)
T ss_dssp CSCCCCSCEECSSSEEEEESCHHHHHHHHCC----SEEEEECCTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHH--CCC
T ss_pred CccccccccccCCeEEEEeCcccccccCCCC----CEEEECCCCCCCCCchHHHHHHHHhCHHHHHHHHHHHHHc--CCC
Confidence 44444433 577899999999999 66 9999999999999999999999999999999999886533 599
Q ss_pred CCCcEEEccCCCCCCceEEEecCCCcCCCCCHHHHHHHhh-------------------cCChHHHHHHHHHHHHHHhcC
Q 031139 78 PPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAY-------------------KYPPDEAATIAISTVKEFAND 138 (165)
Q Consensus 78 ~~G~~~vT~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~c~-------------------g~p~~~~A~~~l~~i~~f~~~ 138 (165)
++|++++|++|+|+ ++|||+|||.|+.+. ++++|++|| |||++++|++|++++++
T Consensus 82 ~~G~a~iT~~~~L~-~~VIH~vgP~~~~~~-~~~~L~~~y~~~~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~---- 155 (182)
T 2acf_A 82 TVGGSCLLSGHNLA-KKCLHVVGPNLNAGE-DIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT---- 155 (182)
T ss_dssp CTTCEEEEECTTTC-SEEEEECCCCGGGTC-CTTHHHHHHHGGGGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS----
T ss_pred CCCcEEEeeCCCCC-ceEEEECCCCCCCCc-hHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC----
Confidence 99999999999996 799999999998653 467889998 99999999999999875
Q ss_pred CCEEEEEecChHHHHHHHHHHHHHhc
Q 031139 139 FKEVHFILFTDDIYNVWLKKAKELLQ 164 (165)
Q Consensus 139 ~~~I~~V~~~~~~~~~f~~~~~~~~~ 164 (165)
+|+||+|+++ .|.+.+++||+
T Consensus 156 --~V~~v~~d~~---~y~~~l~~~~p 176 (182)
T 2acf_A 156 --QVYIAVNDKA---LYEQVVMDYLD 176 (182)
T ss_dssp --EEEEEESCHH---HHHHHHHHHC-
T ss_pred --cEEEEECCHH---HHHHHHHHhCC
Confidence 9999999988 55566677775
No 13
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=100.00 E-value=2.1e-36 Score=234.63 Aligned_cols=133 Identities=21% Similarity=0.231 Sum_probs=121.7
Q ss_pred CCceEEEEEcccce----eeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccC
Q 031139 12 TKTSLKISKGDISR----WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPG 87 (165)
Q Consensus 12 ~~~~i~i~~GdIt~----~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~ 87 (165)
.+.+|.+++||||+ +++ |||||+||+.|.++|||++||+++||++|++||+++++.+ |++++|++++|++
T Consensus 36 ~~~~i~l~~GDIt~~~~~~~v----DAIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~l~~~~--g~~~~G~a~iT~~ 109 (193)
T 3ejg_A 36 VHDNVAFYQGDVDTVVNGVDF----DFIVNAANENLAHGGGLAKALDVYTKGKLQRLSKEHIGLA--GKVKVGTGVMVEC 109 (193)
T ss_dssp EETTEEEEECCHHHHHHHCCC----SEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHH--CSCCTTCEEEEEE
T ss_pred CCCeEEEEeCcccccCcCCCc----CEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHHc--CCCCCCCEEEecC
Confidence 56789999999999 665 9999999999999999999999999999999999986543 5999999999999
Q ss_pred CCCCCceEEEecCCCcCCCCCHHHHHHHhh--------------------cCChHHHHHHHHHHHHHHhcCCCEEEEEec
Q 031139 88 FKLPVSHVIHTVGPVFNFHCNPEDILRSAY--------------------KYPPDEAATIAISTVKEFANDFKEVHFILF 147 (165)
Q Consensus 88 ~~L~~k~IiH~v~P~~~~~~~~~~~L~~c~--------------------g~p~~~~A~~~l~~i~~f~~~~~~I~~V~~ 147 (165)
|+| ||||+|||.|+. +++++|++|| |||++++|+++++++++ .+|+||+|
T Consensus 110 ~~L---~VIHtVGP~~~~--~~~~~L~~~y~~~L~~~~SIAfPaIstGi~G~P~~~aa~ial~~v~~-----~~V~fv~f 179 (193)
T 3ejg_A 110 DSL---RIFNVVGPRKGK--HERDLLIKAYNTINNEQGTPLTPILSCGIFGIKLETSLEVLLDVCNT-----KEVKVFVY 179 (193)
T ss_dssp TTE---EEEEEECCCSST--THHHHHHHHHHHHHHSSSCEEECCTTCGGGCCCHHHHHHHHHHHCCS-----SCEEEEEC
T ss_pred CCe---eEEEecCCCCCc--hHHHHHHHHHHHHHHhcCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEEEEEc
Confidence 999 999999999965 5788999998 99999999999999988 49999999
Q ss_pred ChHHHHHHHHHHH
Q 031139 148 TDDIYNVWLKKAK 160 (165)
Q Consensus 148 ~~~~~~~f~~~~~ 160 (165)
+++.+++|++.+.
T Consensus 180 ~~~~~~~~~~~l~ 192 (193)
T 3ejg_A 180 TDTEVCKVKDFVS 192 (193)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc
Confidence 9999999988764
No 14
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=100.00 E-value=7.1e-35 Score=223.34 Aligned_cols=142 Identities=20% Similarity=0.206 Sum_probs=121.4
Q ss_pred eeecCCCceEEEEEcccceeeccC----CCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcE
Q 031139 7 TLSFSTKTSLKISKGDISRWCVDR----SSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEA 82 (165)
Q Consensus 7 ~~~~~~~~~i~i~~GdIt~~~~~~----~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~ 82 (165)
+...+++.++++++||||++.+|. ++|||||+||++|.++|||++||+++||++|++||+++++++ |+++ +
T Consensus 7 ~~~~~~~~~i~v~~GDIt~~~vDa~~~~~~DaIVNaAN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~~~--g~~~---a 81 (176)
T 3ejf_A 7 TCEKPKFLEYKTCVGDLTVVIAKALDEFKEFCIVNAANEHMTHGSGVAKAIADFCGLDFVEYCEDYVKKH--GPQQ---R 81 (176)
T ss_dssp ---CCSSCEEEEEESCHHHHHHHHHHHHSSEEEEEECCTTCCCCSHHHHHHHHHHCHHHHHHHHHHHHHH--CCCS---E
T ss_pred cccCCCCceEEEEeeeCeEEeecccccCCCCEEEeCCCcccCCCchHHHHHHHHhhHHHHHHHHHHHHhc--CCCC---e
Confidence 456789999999999999998743 668899999999999999999999999999999999987543 4676 8
Q ss_pred EEccCCCCCCceEEEecCCCcCCCCCHHHHHHHhh---------------------cCChHHHHHHHHHHHHHHhcCCCE
Q 031139 83 RITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAY---------------------KYPPDEAATIAISTVKEFANDFKE 141 (165)
Q Consensus 83 ~vT~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~c~---------------------g~p~~~~A~~~l~~i~~f~~~~~~ 141 (165)
++|.|+.|++++|||+|||.|... +++++|++|| |||++++|++|++++++ ++
T Consensus 82 ~iT~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~L~~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~-----~~ 155 (176)
T 3ejf_A 82 LVTPSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNVLVDGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG-----CT 155 (176)
T ss_dssp EEECCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTTCCTTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT-----CC
T ss_pred eecccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHHHHcCCcEEEECccccCCCCCCHHHHHHHHHHHhhh-----cc
Confidence 999999999999999999999653 5789999998 99999999999999984 34
Q ss_pred EEEEec--ChHHHHHHHHHH
Q 031139 142 VHFILF--TDDIYNVWLKKA 159 (165)
Q Consensus 142 I~~V~~--~~~~~~~f~~~~ 159 (165)
|+|++| +++.+++|...+
T Consensus 156 v~v~~~~~D~e~~~~~~~~~ 175 (176)
T 3ejf_A 156 IRVLLFSLSQEHIDYFDVTC 175 (176)
T ss_dssp CEEEEEESCHHHHHHHHHTC
T ss_pred eEEEEEcCCHHHHHHHHHHh
Confidence 555555 578999998764
No 15
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=100.00 E-value=1.2e-34 Score=222.07 Aligned_cols=139 Identities=24% Similarity=0.228 Sum_probs=123.3
Q ss_pred CCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCC
Q 031139 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 91 (165)
Q Consensus 12 ~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~ 91 (165)
.+.+|++++||||++..+.++|||||++|+.|.++|||++||++++|++|++||+++.+.+ +++++|++++|++++|
T Consensus 15 ~~~~i~i~~GDIt~~~~~~~~DaIVNaaN~~l~~ggGv~~AI~~aaG~~l~~ec~~~~~~~--g~~~~G~a~iT~~~~l- 91 (174)
T 2vri_A 15 VYKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEGQLQSLSKDYISSN--GPLKVGAGVMLECEKF- 91 (174)
T ss_dssp EETTEEEEESCHHHHTTTSCCSEEEEEECTTCCCCSHHHHHHHHHTTTHHHHHHHHHHHHH--CSCCTTCEEEEECSSC-
T ss_pred CCCeEEEEeccccccccCCCccEEEECCCccCCCCCcHhHHHHHHhhHHHHHHHHHHHHhc--CCCCCCeEEEEECCCC-
Confidence 4678999999999982222349999999999999999999999999999999999986532 5999999999999997
Q ss_pred CceEEEecCCCcCCCCCHHHHHHHhh--------------------cCChHHHHHHHHHHHHHHhcCCCEEEEEecChHH
Q 031139 92 VSHVIHTVGPVFNFHCNPEDILRSAY--------------------KYPPDEAATIAISTVKEFANDFKEVHFILFTDDI 151 (165)
Q Consensus 92 ~k~IiH~v~P~~~~~~~~~~~L~~c~--------------------g~p~~~~A~~~l~~i~~f~~~~~~I~~V~~~~~~ 151 (165)
||||+|||.|... .+++|++|| |||++++|++|++++.+ ++|+||+|+++.
T Consensus 92 --~VIH~vgP~~~~~--~~~~L~~~y~~~L~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-----~~V~~v~f~~~~ 162 (174)
T 2vri_A 92 --NVFNVVGPRTGKH--EHSLLVEAYNSILFENGIPLMPLLSCGIFGVRIENSLKALFSCDIN-----KPLQVFVYSSNE 162 (174)
T ss_dssp --EEEEEECCCSSTT--HHHHHHHHHHHHHHSSSCEEEECSSCGGGCCCHHHHHHHHHTSCCC-----SCEEEEECSHHH
T ss_pred --EEEEEcCCCCCcc--hHHHHHHHHHHHHhhCCcEEeCccccCCCCCCHHHHHHHHHHHHhh-----CcEEEEEcCHHH
Confidence 9999999999643 778999998 99999999999999876 789999999999
Q ss_pred HHHHHHHHHHH
Q 031139 152 YNVWLKKAKEL 162 (165)
Q Consensus 152 ~~~f~~~~~~~ 162 (165)
+++|.+.|++.
T Consensus 163 ~~~~~~~l~~~ 173 (174)
T 2vri_A 163 EQAVLKFLDGL 173 (174)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhc
Confidence 99999998753
No 16
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=100.00 E-value=2.7e-34 Score=218.81 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=115.4
Q ss_pred CceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 031139 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (165)
Q Consensus 13 ~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~ 92 (165)
-.+..+++||||++++ |||||+||+.|.++|||++||+++||++++ .+++++|++++|+++ |
T Consensus 9 ~~~~~~~~GDIt~~~v----DAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~~---~ 70 (168)
T 3gpg_A 9 APSYRVKRMDIAKNDE----ECVVNAANPRGLPGDGVCKAVYKKWPESFK-----------NSATPVGTAKTVMCG---T 70 (168)
T ss_dssp CCCC-CEESCGGGCCS----SCEEEECCTTCCCCSHHHHHHHHHCGGGGT-----------TCCCCTTCEEEEEET---T
T ss_pred CCceEEEeCcCCcccC----CEEEeCCCcccCCCchHHHHHHHHhhHHhh-----------cCCCCCCCEEEecCC---C
Confidence 3467899999999987 999999999999999999999999999763 259999999999994 9
Q ss_pred ceEEEecCCCcCCCCC--HHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhc-CCCEEEE
Q 031139 93 SHVIHTVGPVFNFHCN--PEDILRSAY-------------------------KYPPDEAATIAISTVKEFAN-DFKEVHF 144 (165)
Q Consensus 93 k~IiH~v~P~~~~~~~--~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~-~~~~I~~ 144 (165)
|||||+|||.|+.+.. .+++|++|| |||++++|+ +++++.+|++ .+++|+|
T Consensus 71 k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~~~~~V~f 149 (168)
T 3gpg_A 71 YPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDSTDADVVI 149 (168)
T ss_dssp EEEEEECCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTTCCSEEEE
T ss_pred CEEEEeCCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccCCCCEEEE
Confidence 9999999999998653 357899998 999999999 8999999986 5889999
Q ss_pred EecChHHHHHHHHHHHH
Q 031139 145 ILFTDDIYNVWLKKAKE 161 (165)
Q Consensus 145 V~~~~~~~~~f~~~~~~ 161 (165)
|+|+++++++|++.|++
T Consensus 150 v~f~~~~~~~y~~~l~~ 166 (168)
T 3gpg_A 150 YCRDKEWEKKISEAIQM 166 (168)
T ss_dssp EESCHHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHhc
Confidence 99999999999999875
No 17
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=100.00 E-value=1.8e-33 Score=214.29 Aligned_cols=131 Identities=20% Similarity=0.225 Sum_probs=116.0
Q ss_pred CceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 031139 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 92 (165)
Q Consensus 13 ~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~ 92 (165)
+.+|++++||||++++ |||||++|+.|.++|||++||++++|++++ .+++++|++++|++ +|
T Consensus 3 ~~~i~v~~GDIt~~~v----DAIVNaAN~~l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~---~~ 64 (168)
T 3gqe_A 3 APSYHVVRGDIATATE----GVIINAANSKGQPGGGVCGALYKKFPESFD-----------LQPIEVGKARLVKG---AA 64 (168)
T ss_dssp CCEEEEEESCGGGCCS----SEEEEEECTTSCCTTGGGSHHHHHCGGGCC-----------CCCCCTTCEEEECC---TT
T ss_pred CCeEEEEeCcccCccc----CEEEeCCCcccCCCccHHHHHHHHhhHHhc-----------CCCcCCCcEEEEcC---CC
Confidence 5689999999999987 999999999999999999999999999753 25999999999998 49
Q ss_pred ceEEEecCCCcCCCCC--HHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 031139 93 SHVIHTVGPVFNFHCN--PEDILRSAY-------------------------KYPPDEAATIAISTVKEFANDFKEVHFI 145 (165)
Q Consensus 93 k~IiH~v~P~~~~~~~--~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~~~~~I~~V 145 (165)
|||||+|||.|+.+.. ++++|++|| |||++++|+.|.+.+..+-.++++|+||
T Consensus 65 k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~~~l~~~~~~~~~V~iv 144 (168)
T 3gqe_A 65 KHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIY 144 (168)
T ss_dssp CCEEEEECCCTTTSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CEEEEcCCCccCCCCchhHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHCCCCCCeEEEE
Confidence 9999999999998652 357899998 9999999997776666655678899999
Q ss_pred ecChHHHHHHHHHHHH
Q 031139 146 LFTDDIYNVWLKKAKE 161 (165)
Q Consensus 146 ~~~~~~~~~f~~~~~~ 161 (165)
+|++++++.|++.+.+
T Consensus 145 ~fd~~~~~~~~~~~~~ 160 (168)
T 3gqe_A 145 CRDKKWEMTLKEAVAR 160 (168)
T ss_dssp ESCHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHh
Confidence 9999999999998765
No 18
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=99.96 E-value=4.2e-29 Score=203.90 Aligned_cols=135 Identities=17% Similarity=0.095 Sum_probs=111.2
Q ss_pred CCceEEEEEccccee--------e-ccCCCcEEEecCCCCCCCCChHHHHHHHhhC-hHHHHHHhhccccCCCCCCCCCc
Q 031139 12 TKTSLKISKGDISRW--------C-VDRSSDAIVSPTNEILLLGGFTAAAIHEAAG-PDLQKACYQIPEAQPRVRCPPGE 81 (165)
Q Consensus 12 ~~~~i~i~~GdIt~~--------~-~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG-~~l~~e~~~~~~~~~~~~~~~G~ 81 (165)
++.+|+|++||||++ + .++++||||||||+.+.++|||++||+++|| +.++++|+++.+ .|.+++|+
T Consensus 43 ~~~~i~i~~GDIt~l~~~~~~~~~~~~~~vDAIVNaANs~l~~gGGVd~AI~raaGg~~l~~ec~~~~~---~g~~~~G~ 119 (284)
T 1njr_A 43 NDKYLCIHHGHLQSLMDSMRKGDAIHHGHSYAIVSPGNSYGYLGGGFDKALYNYFGGKPFETWFRNQLG---GRYHTVGS 119 (284)
T ss_dssp --CCEEEEESCHHHHHHHHHTTCC----CCEEEEECCBTTCCCCSSHHHHHHHHHTSHHHHHHHHHHTT---TSCCCTTC
T ss_pred CCCEEEEEeCCHhhhhhhccccccccCCCccEEEeCCCCCCCCCchHHHHHHHhhCcHHHHHHHHHHHh---cCCCCCCe
Confidence 356899999999999 0 0113499999999999999999999999975 788999998763 36899999
Q ss_pred EEEccCC----------CCCCceEEEecCCCcCCCC---------CHHHHHHHhh------------------------c
Q 031139 82 ARITPGF----------KLPVSHVIHTVGPVFNFHC---------NPEDILRSAY------------------------K 118 (165)
Q Consensus 82 ~~vT~~~----------~L~~k~IiH~v~P~~~~~~---------~~~~~L~~c~------------------------g 118 (165)
+++|+++ +|+|+||||+|||+|..+. .+.+.|++|| |
T Consensus 120 a~iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~~~p~~~~~~~L~~~~~~~L~~ae~~i~SIAfPaIsTGv~G 199 (284)
T 1njr_A 120 ATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNPQNPLKTGFEPVFNAMWNALMHSPKDIDGLIIPGLCTGYAG 199 (284)
T ss_dssp CEEEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCTTCHHHHTHHHHHHHHHHHHHTSCTTCSEEEECCTTCSTTC
T ss_pred EEEEECCcccccccchhcCCCCEEEEeCCCccCCCCCcccccccccHHHHHHHHHHHHHHHHHhCCCEEEECcccccCCC
Confidence 9999999 9999999999999998752 1357888887 9
Q ss_pred CChHHHHHHHHHHHHHHhcC------C-CEEEEEecCh
Q 031139 119 YPPDEAATIAISTVKEFAND------F-KEVHFILFTD 149 (165)
Q Consensus 119 ~p~~~~A~~~l~~i~~f~~~------~-~~I~~V~~~~ 149 (165)
||++++|++|++++++|+.. + +.|.||.|++
T Consensus 200 ~P~~~aA~i~~~av~~f~~~~~~s~~~~~~vi~~~~~~ 237 (284)
T 1njr_A 200 VPPIISCKSMAFALRLYMAGDHISKELKNVLIMYYLQY 237 (284)
T ss_dssp CCHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcccccceEEEEEECHH
Confidence 99999999999999999952 2 3466676643
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.94 E-value=3.8e-27 Score=204.33 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=112.5
Q ss_pred ceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCc
Q 031139 14 TSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVS 93 (165)
Q Consensus 14 ~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~~k 93 (165)
..++|++||||+.++ |||||+||++|..||||++||+++||+++.+ +.+++|++++|+++ .|
T Consensus 344 PsfrIIRgDITk~~v----DAIVNAANtsL~gGgGVdGAIhraaG~~ll~-----------~~~~tG~AkIT~g~---aK 405 (670)
T 4gua_A 344 PSYRTKRENIADCQE----EAVVNAANPLGRPGEGVCRAIYKRWPTSFTD-----------SATETGTARMTVCL---GK 405 (670)
T ss_dssp CCEEEECSCGGGCCS----SEEEEECCTTCCCCSSHHHHHHHHCGGGGTT-----------CCCCTTCEEEEEET---TE
T ss_pred cceeEEecccccccc----CEEEeCCCCCCCCcCCHhHHHHHHhhHHHhc-----------CCCCcceEEEecCC---Cc
Confidence 378999999999987 9999999999999999999999999998864 37889999999999 59
Q ss_pred eEEEecCCCcCCCCCH--HHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhcCC-CEEEEE
Q 031139 94 HVIHTVGPVFNFHCNP--EDILRSAY-------------------------KYPPDEAATIAISTVKEFANDF-KEVHFI 145 (165)
Q Consensus 94 ~IiH~v~P~~~~~~~~--~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~~~-~~I~~V 145 (165)
||||+|||.|+++.+. .++|++|| |||++ .++++++++.+|++.. .+|+++
T Consensus 406 yIIHtVGPvw~~g~~~E~~~lLascYrnsLkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D~dV~Iv 484 (670)
T 4gua_A 406 KVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTDADVTIY 484 (670)
T ss_dssp EEEEECCCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSSCEEEEE
T ss_pred eEEEcCCCCccCCCCchHHHHHHHHHHHHHHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccCCEEEEE
Confidence 9999999999998743 37899999 99987 5899999999999754 599999
Q ss_pred ecChHHHHHHHHHHH
Q 031139 146 LFTDDIYNVWLKKAK 160 (165)
Q Consensus 146 ~~~~~~~~~f~~~~~ 160 (165)
+|+++.-..+++.+.
T Consensus 485 cfDKkwe~~Ik~ai~ 499 (670)
T 4gua_A 485 CLDKKWKERIDAALQ 499 (670)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred EecChHHHHHHHHHH
Confidence 999986666665554
No 20
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.86 E-value=1.1e-21 Score=148.21 Aligned_cols=117 Identities=9% Similarity=0.094 Sum_probs=95.6
Q ss_pred cCCCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCC
Q 031139 10 FSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFK 89 (165)
Q Consensus 10 ~~~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~ 89 (165)
++++.+|++++||||+.+ .+|+|||++|+++.+++||+++|++++|. + +||++ +++++|++++|+++
T Consensus 16 ~~~~~~i~~v~GDIt~~~---~~daIVnaaN~~~~~GgGVa~ai~~~~p~-~-~e~~~-------~~~~~G~a~it~~~- 82 (160)
T 2jyc_A 16 DPEGSRITYVKGDLFACP---KTDSLAHCISEDCRMGAGIAVLFKKKFGG-V-QELLN-------QQKKSGEVAVLKRD- 82 (160)
T ss_dssp CCCSCSEEEEESCSSSSC---SSCEEEEEECTTCCCCSSTHHHHHHHHCC-H-HHHHH-------HCCCTTCEEEEEET-
T ss_pred cCCCceEEEEeCcCCCCC---CCCEEEEccCCcCCCCCcHHHHHHHHChH-H-HHHhc-------cCCCCCcEEEEecC-
Confidence 457899999999999986 13999999999999999999999999965 4 57765 27899999999985
Q ss_pred CCCceEEEecCCC-cCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhcCCCEEE
Q 031139 90 LPVSHVIHTVGPV-FNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVKEFANDFKEVH 143 (165)
Q Consensus 90 L~~k~IiH~v~P~-~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~~~~~I~ 143 (165)
.+||||++||. |.. ..+.+.|++|| |+|.+++++++.+++.+. .|.
T Consensus 83 --~~~Vih~vg~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~~-----~i~ 154 (160)
T 2jyc_A 83 --GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEAT-----DIK 154 (160)
T ss_dssp --TEEEEEEECSSSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTTS-----CCE
T ss_pred --CcEEEEEecCCCCCC-CChHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhhC-----CCe
Confidence 59999999998 754 44466777776 999999999988876542 355
Q ss_pred EEec
Q 031139 144 FILF 147 (165)
Q Consensus 144 ~V~~ 147 (165)
+++|
T Consensus 155 v~Vy 158 (160)
T 2jyc_A 155 ITVY 158 (160)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 21
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.85 E-value=4.4e-21 Score=143.16 Aligned_cols=116 Identities=10% Similarity=0.111 Sum_probs=94.1
Q ss_pred CCceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccCCCCC
Q 031139 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 91 (165)
Q Consensus 12 ~~~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~~~L~ 91 (165)
++.+|++++||||+.. .+|+|||++|+++.+++||+++|++++|. + +||++ +.+++|++++|+++
T Consensus 7 ~~~~i~~v~GDIt~~~---~~daIVnaaN~~~~~G~Gva~ai~~~~p~-~-~~~~~-------~~~~~G~a~it~~~--- 71 (149)
T 2eee_A 7 GGSRITYVKGDLFACP---KTDSLAHCISEDCRMGAGIAVLFKKKFGG-V-QELLN-------QQKKSGEVAVLKRD--- 71 (149)
T ss_dssp SSCCCEEECSCSSSSC---SSCEEEEEEETTCCCCSTTHHHHHHHTCC-H-HHHHT-------TCCCTTCEEEEESS---
T ss_pred CCeeEEEEecccccCC---CCcEEEEEeCCCCCcCCcHHHHHHHHCcH-H-HHHhc-------ccCCCccEEEEEcC---
Confidence 6889999999999986 14999999999999999999999999965 4 56764 27899999999985
Q ss_pred CceEEEecCCC-cCCCCCHHHHHHHhh-------------------------cCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 031139 92 VSHVIHTVGPV-FNFHCNPEDILRSAY-------------------------KYPPDEAATIAISTVKEFANDFKEVHFI 145 (165)
Q Consensus 92 ~k~IiH~v~P~-~~~~~~~~~~L~~c~-------------------------g~p~~~~A~~~l~~i~~f~~~~~~I~~V 145 (165)
++||||++||. |.. ..+.+.|++|| |+|.++++++|.+++.+ . .|.++
T Consensus 72 ~~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~~----~-~i~v~ 145 (149)
T 2eee_A 72 GRYIYYLITKKRASH-KPTYENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA----T-DIKIT 145 (149)
T ss_dssp SSEEEEEEEESSTTS-CCCHHHHHHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHTT----C-CCEEE
T ss_pred CCEEEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhcc----C-CceEE
Confidence 69999999998 755 34456777776 99999999998776553 2 35555
Q ss_pred ecC
Q 031139 146 LFT 148 (165)
Q Consensus 146 ~~~ 148 (165)
+|+
T Consensus 146 Vy~ 148 (149)
T 2eee_A 146 VYT 148 (149)
T ss_dssp EEC
T ss_pred EEe
Confidence 553
No 22
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.82 E-value=2.3e-20 Score=140.42 Aligned_cols=114 Identities=17% Similarity=0.033 Sum_probs=92.0
Q ss_pred CCCceEEEEEcccce---eeccCCCcEEEecCCCCCCCCChHHHHHHHhhChHHHHHHhhccccCCCCCCCCCcEEEccC
Q 031139 11 STKTSLKISKGDISR---WCVDRSSDAIVSPTNEILLLGGFTAAAIHEAAGPDLQKACYQIPEAQPRVRCPPGEARITPG 87 (165)
Q Consensus 11 ~~~~~i~i~~GdIt~---~~~~~~~DaIVNs~n~~l~~~ggvs~aI~~~aG~~l~~e~~~~~~~~~~~~~~~G~~~vT~~ 87 (165)
|+.+.|++++||||+ ..+ |+|||++|+.+.+|+|++++|++++ +++.+++++..++. +++++|++++|++
T Consensus 1 ~~~M~i~~v~GDit~~~~~~~----daIvn~~N~~~~~G~Gva~ai~~~~-p~~~~~~~~~~~~~--~~~~~G~~~i~~~ 73 (158)
T 2fg1_A 1 SNAMEILYIKGDATAPIGSGV----KVITHICNDIGGWGKGFVLALSKKW-KMPEEAYRQWYKSQ--EEFTLGAVQFVNV 73 (158)
T ss_dssp -CCCCCEEEESCTTSCCSSSC----EEEEEEEETTCCCCSTHHHHHHHHC-SHHHHHHHHHHHHT--SSCSTTCEEEEEE
T ss_pred CCceEEEEEecccCCCCCCCC----eEEEEEecCCCCcCccHHHHHHHHC-ChHHHHHHHHHhhc--cCcCCccEEEEec
Confidence 355789999999999 554 9999999999999999999999999 78878877755432 4899999999998
Q ss_pred CCCCCceEEEecCCC-cCCCC-C----HHHHHHHhh------------------------cCChHHHHHHHHHHHH
Q 031139 88 FKLPVSHVIHTVGPV-FNFHC-N----PEDILRSAY------------------------KYPPDEAATIAISTVK 133 (165)
Q Consensus 88 ~~L~~k~IiH~v~P~-~~~~~-~----~~~~L~~c~------------------------g~p~~~~A~~~l~~i~ 133 (165)
+. .+||||++||. |..+. . ..+.|++|| |+|.+++++++.+.+.
T Consensus 74 ~~--~~~Vi~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~a~~~~~sIa~P~Ig~G~~G~~w~~v~~ii~~~l~ 147 (158)
T 2fg1_A 74 EN--KLYVANMIGQHGIYKDSKGLPPIRYDAVRQCLKEVALFTIAHKASVHMPRIGCGLAGGKWELMEQIIKEELI 147 (158)
T ss_dssp ET--TEEEEEEEEESSSSCCTTCCCSBCHHHHHHHHHHHHHHHHHHTCEEEECCTTCSTTCCCHHHHHHHHHHHTG
T ss_pred CC--CeEEEEEEEEcccCCCCCCCccccHHHHHHHHHHHHHHHHHhCCeEEecCcCCCCCCCCHHHHHHHHHHHhc
Confidence 42 39999999998 76432 1 457777776 9999999997766543
No 23
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=96.70 E-value=0.0012 Score=53.25 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHH---HHhcCCCEEEEEecCh----HHHHHHHHHHHH
Q 031139 118 KYPPDEAATIAISTVK---EFANDFKEVHFILFTD----DIYNVWLKKAKE 161 (165)
Q Consensus 118 g~p~~~~A~~~l~~i~---~f~~~~~~I~~V~~~~----~~~~~f~~~~~~ 161 (165)
|.|++++|+++.+.+. +|...+++|.|+++++ ..+++|.+.|..
T Consensus 226 gnpp~~VA~~~~~vL~~~~~f~~~f~~VvFAv~d~~~~~~n~~~F~~~F~~ 276 (277)
T 3sig_A 226 GNDPAQVAETFAGLLLDGGPFAGRFAHVVFAVWDTAPGAPRHAAFARRFGS 276 (277)
T ss_dssp CCCHHHHHHHHHHHHSTTCTTTTTCSEEEEECCCCSTTCHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHhhcchhcCCceEEEEEEecCCCcchHHHHHHHHHhh
Confidence 8999999999999998 4767899999999987 689999988764
No 24
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=33.40 E-value=34 Score=28.17 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=28.1
Q ss_pred ceEEEEEcccceeeccCCCcEEEecCCCCCCCCChHHHHH
Q 031139 14 TSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAI 53 (165)
Q Consensus 14 ~~i~i~~GdIt~~~~~~~~DaIVNs~n~~l~~~ggvs~aI 53 (165)
.+|.+++||++++...+++|+||.-.-...+...++-..+
T Consensus 132 ~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~~e~~l~~~ 171 (376)
T 4hc4_A 132 DRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSV 171 (376)
T ss_dssp TTEEEEESCTTTCCCSSCEEEEECCCCBTTBTTTCSHHHH
T ss_pred ceEEEEeeeeeeecCCccccEEEeecccccccccchhhhH
Confidence 4699999999988766789999985544444444444433
No 25
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=30.56 E-value=21 Score=31.80 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=22.8
Q ss_pred CceEEEEEcccceeeccCCCcEEEecC
Q 031139 13 KTSLKISKGDISRWCVDRSSDAIVSPT 39 (165)
Q Consensus 13 ~~~i~i~~GdIt~~~~~~~~DaIVNs~ 39 (165)
+.+|.|++||+++++-.+++|+||.=.
T Consensus 410 ~dkVtVI~gd~eev~LPEKVDIIVSEw 436 (637)
T 4gqb_A 410 GSQVTVVSSDMREWVAPEKADIIVSEL 436 (637)
T ss_dssp GGGEEEEESCTTTCCCSSCEEEEECCC
T ss_pred CCeEEEEeCcceeccCCcccCEEEEEc
Confidence 458999999999987667899999854
No 26
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=24.79 E-value=1.2e+02 Score=22.51 Aligned_cols=28 Identities=4% Similarity=-0.270 Sum_probs=22.3
Q ss_pred ceEEEEEcccceeeccCCCcEEEecCCCC
Q 031139 14 TSLKISKGDISRWCVDRSSDAIVSPTNEI 42 (165)
Q Consensus 14 ~~i~i~~GdIt~~~~~~~~DaIVNs~n~~ 42 (165)
..+.++.+|++++. -.++|+||+.+...
T Consensus 47 ~~~~~~~~D~~d~~-~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 47 SGAEPLLWPGEEPS-LDGVTHLLISTAPD 74 (286)
T ss_dssp TTEEEEESSSSCCC-CTTCCEEEECCCCB
T ss_pred CCCeEEEecccccc-cCCCCEEEECCCcc
Confidence 35788999999876 46789999988754
No 27
>1qdl_A Protein (anthranilate synthase (TRPE-subunit)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: d.161.1.1
Probab=20.14 E-value=37 Score=28.54 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=38.8
Q ss_pred CCCCCcEEEccCCCC-CCceEEEecCCCcCC---CCCHHHHHHHhh------cCChHHHHHHHH
Q 031139 76 RCPPGEARITPGFKL-PVSHVIHTVGPVFNF---HCNPEDILRSAY------KYPPDEAATIAI 129 (165)
Q Consensus 76 ~~~~G~~~vT~~~~L-~~k~IiH~v~P~~~~---~~~~~~~L~~c~------g~p~~~~A~~~l 129 (165)
-+.+|++.+..-..+ ...+|.|.+.+.-.. +...-++|+.++ |.|+..+.+++-
T Consensus 285 v~~~GsV~V~~~~~ve~~~~V~HL~S~V~g~L~~~~~~~d~l~alfP~gsvtGaPK~rAmeiI~ 348 (422)
T 1qdl_A 285 VCVPGTVKVPELMYVEKYSHVQHIVSKVIGTLKKKYNALNVLSATFPAGTVSGAPKPMAMNIIE 348 (422)
T ss_dssp TBCTTCCEEEEEEEEEECSSEEEEEEEEEEEBCTTCCHHHHHHHHCSCGGGSEESHHHHHHHHH
T ss_pred hcCCCcEEeCCCceEEEcCceEEeeeEEEEEECCCCCHHHHHHHhCCCccccCccHHHHHHHHH
Confidence 567888888876554 567899998765332 234578888888 999999766554
Done!