BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031142
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OG6|A Chain A, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
          Nadph
 pdb|1OG6|B Chain B, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
          Nadph
 pdb|1OG6|C Chain C, Ydhf, An Aldo-keto Reductase From E.coli Complexed With
          Nadph
          Length = 298

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 7/47 (14%)

Query: 20 AYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQ 66
           YW L    +WN   + +++SF+  HLD+ +TT   ++H++++   Q
Sbjct: 20 GYWRL---MDWNMSAR-QLVSFIEEHLDLGVTT---VDHADIYGGYQ 59


>pdb|1UR3|M Chain M, Crystal Structure Of The Apo Form Of The E.Coli Ydhf
          Protein
          Length = 319

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 7/47 (14%)

Query: 20 AYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQ 66
           YW L    +WN   + +++SF+  HLD+ +TT   ++H++++   Q
Sbjct: 41 GYWRLX---DWNXSAR-QLVSFIEEHLDLGVTT---VDHADIYGGYQ 80


>pdb|3L2O|B Chain B, Structure-Based Mechanism Of Dimerization-Dependent
           Ubiquitination By The Scffbx4 Ubiquitin Ligase
          Length = 312

 Score = 26.9 bits (58), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 26  SCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKADVV 85
           S  +W +L   +IL    S     +T G   ++  V+     YL I+     A F   + 
Sbjct: 57  SSVDWKSLPDLEILKKPIS----EVTDGAFFDYMAVYRMCCPYLIIQNEPRFAMFGPGLE 112

Query: 86  EDSQSLVLSMEDKEEVT 102
           E + SLVLS+   EE+ 
Sbjct: 113 ELNTSLVLSLMSSEELC 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,713,876
Number of Sequences: 62578
Number of extensions: 171898
Number of successful extensions: 388
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 9
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)