BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031142
         (165 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C1DAG2|CCA_LARHH Multifunctional CCA protein OS=Laribacter hongkongensis (strain
           HLHK9) GN=cca PE=3 SV=1
          Length = 405

 Score = 32.3 bits (72), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 71  IKASKHAARFKADVVEDSQSLVLSMEDKEEVTDEFERVNVWWELGKNI 118
           ++ ++ AARF   + ED+Q+L+  M D  EV D      VW EL K +
Sbjct: 136 LRIARFAARFGFSIAEDTQNLMRFMVDDGEV-DHLVPERVWQELSKGL 182


>sp|Q9FH77|DCP5L_ARATH Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2
           SV=1
          Length = 571

 Score = 30.8 bits (68), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 69  LSIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDEFERVNVWWELGKNISRREFQF--- 125
           L +  S H +R  +  +E ++       D E + ++F++  +W  LG+N  R +  +   
Sbjct: 409 LPLPVSAHQSRIPSSSIEYTEEF-----DFEAMNEKFKKSELWGYLGRNNQRNQNDYGEE 463

Query: 126 -SIYPAAEEKRYY 137
            +I P AE K  Y
Sbjct: 464 TAIEPNAEGKPAY 476


>sp|Q12TR7|UVRB_METBU UvrABC system protein B OS=Methanococcoides burtonii (strain DSM
           6242) GN=uvrB PE=3 SV=1
          Length = 660

 Score = 30.0 bits (66), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 30/121 (24%)

Query: 22  WNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYL----SIKASKHA 77
           +N+ S  EW               + + L TG+ +  S++F+A+ N       I+++K +
Sbjct: 145 YNIGSPDEWR-------------RMSVILRTGDEVGRSDLFAALINIHYERNDIESAKGS 191

Query: 78  ARFKADVVEDSQSLVLSMEDKEEV-----TDEFERVNVWWEL-GKNIS--RREFQFSIYP 129
            R K D +E     V   +D   V      DE +R++ +  + GK I   + +    IYP
Sbjct: 192 FRSKGDTIE-----VFPAQDNHGVRIELFGDEIDRISSFDPVTGKTIDEVKEDNSIVIYP 246

Query: 130 A 130
           A
Sbjct: 247 A 247


>sp|Q9M9M4|CSLD3_ARATH Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3
           PE=1 SV=1
          Length = 1145

 Score = 29.6 bits (65), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 31/115 (26%)

Query: 66  QNYLSIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDEFE-RVNVWWELGKNISRREFQ 124
            +Y S+K   +  + KAD V+D + +      K E  DEF+ R+N    L  +I RR   
Sbjct: 454 DSYFSLKRDPYKNKVKADFVKDRRRV------KREY-DEFKVRIN---SLPDSIRRRS-- 501

Query: 125 FSIYPAAEEKRYYKLTFHKRDRELI-----------------PGSYVNHVLDGGR 162
              Y A EE +  KL    RD E++                 PG+++N   D  R
Sbjct: 502 -DAYHAREEIKAMKLQRQNRDEEIVEPVKIPKATWMADGTHWPGTWINSGPDHSR 555


>sp|Q9XWP6|LSD1_CAEEL Probable lysine-specific histone demethylase 1 OS=Caenorhabditis
           elegans GN=spr-5 PE=1 SV=1
          Length = 770

 Score = 29.6 bits (65), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 11/127 (8%)

Query: 12  GRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVF--SAIQNYL 69
           G  ISR+QAY NL S  E   L+  K  +F  S   ++       N  +    +A+    
Sbjct: 259 GSFISRQQAYENLLSMCERGTLI--KYYNFCKSLETVARAREHHFNQMKQLRMTALMAEN 316

Query: 70  SIKASKHAARFKADVV---EDSQSLVLSMEDKEEVTDEFERV-NVWWELGKNISRREFQF 125
            +K  +     + D V      + +  S+E  EEV D FE   N W  L ++   +++  
Sbjct: 317 QLKKMEEEGNLEQDPVLRRSLKRDIATSLEKFEEVADAFETADNHWQRLNEHPQAKQY-- 374

Query: 126 SIYPAAE 132
            ++P +E
Sbjct: 375 -MHPGSE 380


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,400,238
Number of Sequences: 539616
Number of extensions: 2149410
Number of successful extensions: 5576
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5573
Number of HSP's gapped (non-prelim): 15
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)