Query 031142
Match_columns 165
No_of_seqs 110 out of 285
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:50:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14363 AAA_assoc: Domain ass 100.0 1.4E-33 3E-38 204.2 11.0 97 21-118 1-98 (98)
2 KOG0743 AAA+-type ATPase [Post 100.0 9.9E-33 2.1E-37 242.7 10.4 158 4-165 7-164 (457)
3 PF14998 Ripply: Transcription 53.1 20 0.00042 25.6 3.2 34 19-52 45-78 (87)
4 PF10703 MoaF: Molybdenum cofa 47.8 30 0.00065 29.4 4.1 49 70-118 12-61 (265)
5 PF14730 DUF4468: Domain of un 33.4 70 0.0015 22.1 3.6 30 52-81 6-35 (91)
6 PF08152 GUCT: GUCT (NUC152) d 29.7 77 0.0017 22.5 3.3 59 36-96 8-67 (97)
7 COG4585 Signal transduction hi 26.5 1.5E+02 0.0032 25.2 5.2 94 9-103 220-323 (365)
8 PF09178 DUF1945: Domain of un 19.0 1.4E+02 0.0031 18.9 2.6 17 92-111 28-44 (51)
9 PF12691 Minor_capsid_3: Minor 16.8 2.9E+02 0.0063 20.8 4.4 52 58-110 2-54 (135)
10 PLN00211 predicted protein; Pr 15.6 65 0.0014 21.1 0.5 8 151-158 26-33 (61)
No 1
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=100.00 E-value=1.4e-33 Score=204.21 Aligned_cols=97 Identities=34% Similarity=0.461 Sum_probs=92.5
Q ss_pred hcchhhHHHHHHHhHhhHhh-ccCCceEEEEecCCCCCcchHHHHHHHHhhccccccccceeeeecCCCcceEEecCCCc
Q 031142 21 YWNLSSCFEWNALLQPKILS-FLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSMEDKE 99 (165)
Q Consensus 21 ~~~~~~~~~~i~~~~~~l~~-~~s~~~ti~I~e~~~~~~N~ly~Aa~~YLstk~s~~a~rL~~~~~~~~~~~~lsld~~e 99 (165)
++|.+ |++++.++++++++ +++||+||+|+|.+|+++||+|+|||+||+++++++++||++++++++++++|+|++||
T Consensus 1 ~~P~~-lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHE-LRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHH-HHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCC
Confidence 46887 99999999988776 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccCCeEEEEEEeeec
Q 031142 100 EVTDEFERVNVWWELGKNI 118 (165)
Q Consensus 100 ~V~D~F~Gv~v~W~~~~~~ 118 (165)
+|+|+|+||+|||++++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999999864
No 2
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=9.9e-33 Score=242.71 Aligned_cols=158 Identities=30% Similarity=0.395 Sum_probs=145.6
Q ss_pred hhhHHHHHHHHHHHHHhhcchhhHHHHHHHhHhhHhhccCCceEEEEecCCCCCcchHHHHHHHHhhccccccccceeee
Q 031142 4 SSEIQGFLGRLISRKQAYWNLSSCFEWNALLQPKILSFLCSHLDISLTTGERLNHSEVFSAIQNYLSIKASKHAARFKAD 83 (165)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~s~~~ti~I~e~~~~~~N~ly~Aa~~YLstk~s~~a~rL~~~ 83 (165)
.++..|++++++++++.+.|.. ++.|+.+++++|++++++|.++.|.+.+|+.+||+|.|||+||++++++.++||+..
T Consensus 7 ~~s~~~~~~~~~~~~~~~~p~~-~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~~rl~~~ 85 (457)
T KOG0743|consen 7 YASLLGSLMFIKSMLQDIIPPS-INPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIAKRLTQN 85 (457)
T ss_pred hHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhhhhhhhh
Confidence 3577888999999999999986 999999999999999999999999888889999999999999999999999999999
Q ss_pred ecCCCcceEEecCCCceeEeccCCeEEEEEEeeeccccccccccCCCcccceEEEEEecCcCCCCccccchhhHhhcCCC
Q 031142 84 VVEDSQSLVLSMEDKEEVTDEFERVNVWWELGKNISRREFQFSIYPAAEEKRYYKLTFHKRDRELIPGSYVNHVLDGGRP 163 (165)
Q Consensus 84 ~~~~~~~~~lsld~~e~V~D~F~Gv~v~W~~~~~~~~~~~~~~~~~~~~e~r~feLsF~kkhrd~Vl~sYLp~Vl~~ak~ 163 (165)
+.++++++++.+++|++|.|+|+||++||++.+..++.. .+ .+...++|+|+|+|||+|||+|+++|||||.++|++
T Consensus 86 ~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~-~~--~~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~~~k~ 162 (457)
T KOG0743|consen 86 LSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKW-IF--VEREREKRYFELTFHKKPRELVTLSYLPYVVSKAKE 162 (457)
T ss_pred hccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcc-cc--cccCCcceEEEEEecCccHHHhHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999877654 22 244578999999999999999999999999999998
Q ss_pred CC
Q 031142 164 SQ 165 (165)
Q Consensus 164 i~ 165 (165)
|+
T Consensus 163 I~ 164 (457)
T KOG0743|consen 163 IL 164 (457)
T ss_pred HH
Confidence 73
No 3
>PF14998 Ripply: Transcription Regulator
Probab=53.14 E-value=20 Score=25.55 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=30.8
Q ss_pred HhhcchhhHHHHHHHhHhhHhhccCCceEEEEec
Q 031142 19 QAYWNLSSCFEWNALLQPKILSFLCSHLDISLTT 52 (165)
Q Consensus 19 ~~~~~~~~~~~~i~~~~~~l~~~~s~~~ti~I~e 52 (165)
-++||...+.+|+.+.-..|+..|.-+-||.|++
T Consensus 45 RL~wPkSk~~dYLy~~gE~lL~nFPVQATI~fY~ 78 (87)
T PF14998_consen 45 RLYWPKSKCYDYLYSEGEKLLANFPVQATIHFYE 78 (87)
T ss_pred EeeccchHHHHHHHHHHHHHHHcCCceeEEEecc
Confidence 4689988899999999999999999999999965
No 4
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=47.79 E-value=30 Score=29.42 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=38.9
Q ss_pred hccccccccceeeeecCCCcceEEecCCCceeEeccCCe-EEEEEEeeec
Q 031142 70 SIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDEFERV-NVWWELGKNI 118 (165)
Q Consensus 70 stk~s~~a~rL~~~~~~~~~~~~lsld~~e~V~D~F~Gv-~v~W~~~~~~ 118 (165)
+.=++|++.+|-....=.++++++..++|..+...|..- ++.|......
T Consensus 12 A~Gfap~~~~lp~~~~L~G~~~tl~~~~G~~~~~~F~d~~~l~W~~~~~~ 61 (265)
T PF10703_consen 12 ADGFAPDENRLPATDDLAGRTLTLRFDNGWTIEHRFGDDDRLTWRGVEGS 61 (265)
T ss_pred hcccCcccccCCCCcccCCcEEEEEeCCCCEEEEEecCCceEEEeeccCC
Confidence 333466777776666667889999999999999999876 9999987544
No 5
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=33.43 E-value=70 Score=22.11 Aligned_cols=30 Identities=3% Similarity=0.182 Sum_probs=23.9
Q ss_pred cCCCCCcchHHHHHHHHhhcccccccccee
Q 031142 52 TGERLNHSEVFSAIQNYLSIKASKHAARFK 81 (165)
Q Consensus 52 e~~~~~~N~ly~Aa~~YLstk~s~~a~rL~ 81 (165)
+-+|.+.+|||+.+..++.....+...++.
T Consensus 6 ~vpg~sk~~ly~~~~~W~~~~~~~~~s~I~ 35 (91)
T PF14730_consen 6 EVPGMSKDQLYDRAKKWLAKNFKSANSVIQ 35 (91)
T ss_pred EcCCCCHHHHHHHHHHHHHHhcccccceEE
Confidence 446889999999999999998877444544
No 6
>PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=29.65 E-value=77 Score=22.54 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=32.1
Q ss_pred hhHhhccCCceEEEEecCCC-CCcchHHHHHHHHhhccccccccceeeeecCCCcceEEecC
Q 031142 36 PKILSFLCSHLDISLTTGER-LNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSME 96 (165)
Q Consensus 36 ~~l~~~~s~~~ti~I~e~~~-~~~N~ly~Aa~~YLstk~s~~a~rL~~~~~~~~~~~~lsld 96 (165)
|+|++.-.-+.|+.+..... ....-+|.+.+.+|+..+....+++++.+++ +..++.+.
T Consensus 8 RSLLt~~~g~vTl~l~~~~~i~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~--~GavFDvP 67 (97)
T PF08152_consen 8 RSLLTSEEGFVTLQLTCSREIRSPGYAWRILRRQLSEEIADKVKGMTLLKDK--MGAVFDVP 67 (97)
T ss_dssp ---------EEEEEEE-SS--SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTS--SEEEEEEE
T ss_pred cccccCCCCCEEEEEEcCCcCCCchhHHHHHHHhcCHHHHHhhCcEEEecCC--CEEEEECh
Confidence 55666666778998854432 3346677799999999888888888886654 55555544
No 7
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=26.52 E-value=1.5e+02 Score=25.25 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhcchhhHHHH-HHHhHhhHhhccCCceEEEE--ecC------CCCCcchHHHHHHHHhhccccc-ccc
Q 031142 9 GFLGRLISRKQAYWNLSSCFEW-NALLQPKILSFLCSHLDISL--TTG------ERLNHSEVFSAIQNYLSIKASK-HAA 78 (165)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~l~~~~s~~~ti~I--~e~------~~~~~N~ly~Aa~~YLstk~s~-~a~ 78 (165)
.++.=++..+..+.|.+ +... +...+..+.+.+.-...+++ ... +.-..+.+|..+|.=|+--+-. .|.
T Consensus 220 e~l~evR~~v~~Lrp~~-l~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A~ 298 (365)
T COG4585 220 EALQEVRALVRDLRPVE-LEGLGLVEALRALLADFEERTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQAT 298 (365)
T ss_pred HHHHHHHHHHHhcCCch-hhcchHHHHHHHHHHHHHhhcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCCc
Confidence 44556677778888887 4333 45555566665544443333 222 2345699999999999865543 356
Q ss_pred ceeeeecCCCcceEEecCCCceeEe
Q 031142 79 RFKADVVEDSQSLVLSMEDKEEVTD 103 (165)
Q Consensus 79 rL~~~~~~~~~~~~lsld~~e~V~D 103 (165)
.+.+......+.+.|++.||-.=.|
T Consensus 299 ~v~V~l~~~~~~l~l~V~DnG~Gf~ 323 (365)
T COG4585 299 EVRVTLERTDDELRLEVIDNGVGFD 323 (365)
T ss_pred eEEEEEEEcCCEEEEEEEECCcCCC
Confidence 6777776677778888777655333
No 8
>PF09178 DUF1945: Domain of unknown function (DUF1945); InterPro: IPR015261 Members of this entry, which are predominantly found in prokaryotic 4-alpha-glucanotransferase, adopt a structure composed of six antiparallel beta-strands, four of which form a beta-sheet and another two form a type I, beta-hairpin. The role of this family of domains, has not, as yet, been defined []. ; PDB: 1LWH_B 1LWJ_B.
Probab=19.00 E-value=1.4e+02 Score=18.86 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=9.5
Q ss_pred EEecCCCceeEeccCCeEEE
Q 031142 92 VLSMEDKEEVTDEFERVNVW 111 (165)
Q Consensus 92 ~lsld~~e~V~D~F~Gv~v~ 111 (165)
-=.+..+|+ +|+||+++
T Consensus 28 ~HNlSg~E~---vFEGvr~k 44 (51)
T PF09178_consen 28 FHNLSGEEV---VFEGVRLK 44 (51)
T ss_dssp EEE-SSS-E---EETTEEE-
T ss_pred EEecCCCEE---EEEEEEee
Confidence 335565554 59999874
No 9
>PF12691 Minor_capsid_3: Minor capsid protein from bacteriophage; InterPro: IPR024411 This entry represents a minor capsid protein from bacteriophages.
Probab=16.80 E-value=2.9e+02 Score=20.82 Aligned_cols=52 Identities=4% Similarity=0.105 Sum_probs=36.1
Q ss_pred cchHHHHHHHHhhccccccccceeeeec-CCCcceEEecCCCceeEeccCCeEE
Q 031142 58 HSEVFSAIQNYLSIKASKHAARFKADVV-EDSQSLVLSMEDKEEVTDEFERVNV 110 (165)
Q Consensus 58 ~N~ly~Aa~~YLstk~s~~a~rL~~~~~-~~~~~~~lsld~~e~V~D~F~Gv~v 110 (165)
.|.+.+++..||.+ +..-..+.++... .+...+++.+-+|-....-|+|.+-
T Consensus 2 ~~D~~~~l~~~I~~-~~~lp~~~~~~~l~~~~~si~i~~~pg~~~~~y~dG~~~ 54 (135)
T PF12691_consen 2 NNDFQDVLADHINT-ILGLPMKIRLGYLIDEDDSIVIYPIPGGPGSEYMDGTRE 54 (135)
T ss_pred chhHHHHHHHHHhh-ccCCCcccccccccCCCCcEEEEecCCCCccceecCceE
Confidence 57788899999998 2222234455554 4556899998888887777898653
No 10
>PLN00211 predicted protein; Provisional
Probab=15.57 E-value=65 Score=21.14 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=6.2
Q ss_pred ccchhhHh
Q 031142 151 GSYVNHVL 158 (165)
Q Consensus 151 ~sYLp~Vl 158 (165)
+|||||..
T Consensus 26 ~sylphMt 33 (61)
T PLN00211 26 KSYLPHMT 33 (61)
T ss_pred ccccHHHH
Confidence 58999974
Done!