Query 031142
Match_columns 165
No_of_seqs 110 out of 285
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:33:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_Q 50S ribosomal protein L 16.9 62 0.0021 22.1 1.7 60 46-108 25-94 (95)
2 2e29_A ATP-dependent RNA helic 14.7 38 0.0013 23.0 0.2 59 36-96 11-70 (92)
3 3tve_T 50S ribosomal protein L 12.0 3.5E+02 0.012 18.1 4.5 60 47-107 23-92 (92)
4 3qbz_A DDK kinase regulatory s 11.0 98 0.0034 23.3 1.5 28 39-66 102-134 (160)
5 2yyb_A Hypothetical protein TT 9.9 1.2E+02 0.0042 23.6 1.8 59 57-115 2-65 (242)
6 3pct_A Class C acid phosphatas 9.8 1.6E+02 0.0056 23.4 2.5 35 59-104 38-72 (260)
7 2fyw_A Conserved hypothetical 9.1 1.8E+02 0.0061 23.0 2.5 59 56-114 3-66 (267)
8 3ocu_A Lipoprotein E; hydrolas 8.5 2.4E+02 0.0081 22.5 3.0 34 60-104 39-72 (262)
9 3rxy_A NIF3 protein; structura 7.9 2.3E+02 0.0077 23.2 2.6 50 54-104 5-54 (278)
10 3oq0_A DBF4, protein DNA52; DD 7.7 1.8E+02 0.0061 21.7 1.8 39 29-67 50-97 (151)
No 1
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=16.91 E-value=62 Score=22.12 Aligned_cols=60 Identities=10% Similarity=0.206 Sum_probs=40.4
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhhcccc-------c-cccce--eeeecCCCcceEEecCCCceeEeccCCe
Q 031142 46 LDISLTTGERLNHSEVFSAIQNYLSIKAS-------K-HAARF--KADVVEDSQSLVLSMEDKEEVTDEFERV 108 (165)
Q Consensus 46 ~ti~I~e~~~~~~N~ly~Aa~~YLstk~s-------~-~a~rL--~~~~~~~~~~~~lsld~~e~V~D~F~Gv 108 (165)
.++.+ ..+....|+=+|+|..-.-+.. + ..+|. ..++-.+-+...++|.+|++ .|.|+|+
T Consensus 25 y~F~V--~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~~~G~~~~~KKAiVtL~~g~~-id~~~~~ 94 (95)
T 2zjr_Q 25 YSFWV--SPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLAEGQS-IEALAGQ 94 (95)
T ss_dssp CEEEE--CSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCCCCCCCBEEEEEECCSSCC-CSSTTTC
T ss_pred EEEEE--cCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceeccccccCCCcEEEEEEeCCCCe-eecccCC
Confidence 44444 3567778999999988776542 1 12222 12344556789999999999 7999885
No 2
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=14.65 E-value=38 Score=23.02 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=40.2
Q ss_pred hhHhhccCCceEEEEecCCCC-CcchHHHHHHHHhhccccccccceeeeecCCCcceEEecC
Q 031142 36 PKILSFLCSHLDISLTTGERL-NHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSME 96 (165)
Q Consensus 36 ~~l~~~~s~~~ti~I~e~~~~-~~N~ly~Aa~~YLstk~s~~a~rL~~~~~~~~~~~~lsld 96 (165)
|+|++.---+.|+.+.....+ .+.-+|.+.+-+|+..+..+.+++++.++ ++..++.+.
T Consensus 11 RSLLt~~eG~~Tl~l~~~~~i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d--~~GavFDvP 70 (92)
T 2e29_A 11 RSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKG--NMGVCFDVP 70 (92)
T ss_dssp CCCCCCCCCEEEEEEECSSCCSSTHHHHHHHHHHSCHHHHTTCEEEEECTT--SSEEEEEEE
T ss_pred cccccCCCCCEEEEEecCCcccchHHHHHHHHHhcCHHHHhhhCeEEEecC--CCEEEEECc
Confidence 445555555778888544333 35667799999999888877788877664 446666655
No 3
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=12.04 E-value=3.5e+02 Score=18.08 Aligned_cols=60 Identities=10% Similarity=0.227 Sum_probs=39.6
Q ss_pred EEEEecCCCCCcchHHHHHHHHhhcccc-------c-cccce--eeeecCCCcceEEecCCCceeEeccCC
Q 031142 47 DISLTTGERLNHSEVFSAIQNYLSIKAS-------K-HAARF--KADVVEDSQSLVLSMEDKEEVTDEFER 107 (165)
Q Consensus 47 ti~I~e~~~~~~N~ly~Aa~~YLstk~s-------~-~a~rL--~~~~~~~~~~~~lsld~~e~V~D~F~G 107 (165)
+++|.-.......|+=+|++..-.-+.. + ..+|. ..++-.+-+...++|.+|++ .|.|+|
T Consensus 23 ~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA~VtL~~g~~-Id~f~~ 92 (92)
T 3tve_T 23 KYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVAPGQK-IEALEG 92 (92)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSCEEECCCEEEEEEEECTTCC-CTTTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccccccCCCceEEEEEcCCCCc-ccCCCC
Confidence 4444444667889999999998775541 1 12222 23444667789999999954 678876
No 4
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=10.96 E-value=98 Score=23.31 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=19.9
Q ss_pred hhccCCceEEEEec-----CCCCCcchHHHHHH
Q 031142 39 LSFLCSHLDISLTT-----GERLNHSEVFSAIQ 66 (165)
Q Consensus 39 ~~~~s~~~ti~I~e-----~~~~~~N~ly~Aa~ 66 (165)
..+|+..+|++|.. ..++..|++|..|.
T Consensus 102 ~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~ 134 (160)
T 3qbz_A 102 TQFFDTTVTIVITRRSVENIYLLKDTDILSRAK 134 (160)
T ss_dssp ESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHH
T ss_pred eeeccCCeEEEEecCcCcccccCCchhHHHHHH
Confidence 34678889999922 23577888888874
No 5
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=9.89 E-value=1.2e+02 Score=23.64 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=41.2
Q ss_pred CcchHHHHHHHHhhccccc---cccceeeeecCCCcceEEecCCCceeEec--cCCeEEEEEEe
Q 031142 57 NHSEVFSAIQNYLSIKASK---HAARFKADVVEDSQSLVLSMEDKEEVTDE--FERVNVWWELG 115 (165)
Q Consensus 57 ~~N~ly~Aa~~YLstk~s~---~a~rL~~~~~~~~~~~~lsld~~e~V~D~--F~Gv~v~W~~~ 115 (165)
+..++.+..+.++...... +...|-++....=+++.+++|.-++|.|+ =.|+.+=-+++
T Consensus 2 ~~~ei~~~le~~~p~~~~~~~~d~~GL~veG~~~V~~I~~alD~t~~vi~eAi~~~adlIitHH 65 (242)
T 2yyb_A 2 DRDELVRYLDAYLRIQDFPQDPSLNGLQVEGKRTVRKVGAAVDAGEAIFRKALEEEVDFLIVHH 65 (242)
T ss_dssp BHHHHHHHHHHHTTGGGCTTCSSCCEEEECCCSBCCCEEEEEECSHHHHHHHHHTTCSEEEEEE
T ss_pred cHHHHHHHHHHhCCHhhhccCCCCCeEEEcCCcccCEEEEEEcCCHHHHHHHHHCCCCEEEECC
Confidence 3468888899998877665 34668773225557899999999999985 34555544443
No 6
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=9.81 E-value=1.6e+02 Score=23.37 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=23.0
Q ss_pred chHHHHHHHHhhccccccccceeeeecCCCcceEEecCCCceeEec
Q 031142 59 SEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDE 104 (165)
Q Consensus 59 N~ly~Aa~~YLstk~s~~a~rL~~~~~~~~~~~~lsld~~e~V~D~ 104 (165)
-|.|+.|+.||...+.+. ++...+-+|-++.+.|.
T Consensus 38 ~q~~~~A~~~l~~~~~~~-----------g~~~avVfDIDgTlldn 72 (260)
T 3pct_A 38 HQAFNSAKMAFDHAKAKK-----------GKKKAVVVDLDETMIDN 72 (260)
T ss_dssp HHHHHHHHHHHHHCC----------------CEEEEECCBTTTEEC
T ss_pred HHHHHHHHHHHHHHhhcC-----------CCCCEEEEECCccCcCC
Confidence 589999999999876421 12235667777788776
No 7
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=9.05 E-value=1.8e+02 Score=22.96 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=41.1
Q ss_pred CCcchHHHHHHHHhhcccccc--ccceeeeec-CCCcceEEecCCCceeEec--cCCeEEEEEE
Q 031142 56 LNHSEVFSAIQNYLSIKASKH--AARFKADVV-EDSQSLVLSMEDKEEVTDE--FERVNVWWEL 114 (165)
Q Consensus 56 ~~~N~ly~Aa~~YLstk~s~~--a~rL~~~~~-~~~~~~~lsld~~e~V~D~--F~Gv~v~W~~ 114 (165)
+...++.+..+.++......+ ...|-++.+ ..=+++.+++|.-++|.|+ =.|+.+=-++
T Consensus 3 M~~~ei~~~le~~~p~~~a~~~D~~GL~vG~~~~~V~~I~~alD~t~~vi~eAi~~gadlIitH 66 (267)
T 2fyw_A 3 MLASEVIQAYEAFCPQEFSMEGDSRGLQIGTLDKGIQRVMVALDIREETVAEAIEKGVDLIIVK 66 (267)
T ss_dssp CBHHHHHHHHHHHSCGGGSCTTCCCEEEESCSSSBCSEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred ccHHHHHHHHHHhCCHhHcCCCCCCeeEeCCCcCccCEEEEEEcCCHHHHHHHHHCCCCEEEEC
Confidence 455688999999988766444 346777543 3346899999999999985 3455554443
No 8
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=8.49 E-value=2.4e+02 Score=22.46 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=22.8
Q ss_pred hHHHHHHHHhhccccccccceeeeecCCCcceEEecCCCceeEec
Q 031142 60 EVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDE 104 (165)
Q Consensus 60 ~ly~Aa~~YLstk~s~~a~rL~~~~~~~~~~~~lsld~~e~V~D~ 104 (165)
|.|..|+.||..... ++++...+-+|-++.+.|.
T Consensus 39 q~yn~A~~~ld~~~~-----------~~~~~~avVfDIDgTlldn 72 (262)
T 3ocu_A 39 QAYNAAKVAFDHAKV-----------AKGKKKAVVADLNETMLDN 72 (262)
T ss_dssp HHHHHHHHHHHHCCC-----------CTTCEEEEEECCBTTTEEC
T ss_pred HHHHHHHHHHHHhhc-----------cCCCCeEEEEECCCcCCCC
Confidence 889999999986421 2233445666766777775
No 9
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=7.88 E-value=2.3e+02 Score=23.20 Aligned_cols=50 Identities=6% Similarity=0.036 Sum_probs=40.8
Q ss_pred CCCCcchHHHHHHHHhhccccccccceeeeecCCCcceEEecCCCceeEec
Q 031142 54 ERLNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDE 104 (165)
Q Consensus 54 ~~~~~N~ly~Aa~~YLstk~s~~a~rL~~~~~~~~~~~~lsld~~e~V~D~ 104 (165)
.|++.+++++.++.|-.=...++..+|-+ ..++=+++.++||...++.+.
T Consensus 5 ~~m~~~~I~~~~~e~aplae~~dd~Gllv-~~~eV~kIlvaLD~t~~vv~e 54 (278)
T 3rxy_A 5 AGLSTAELVDIALEMAEMRTLPADSAVYV-ESTDLKRVMMGIDIGPAELLL 54 (278)
T ss_dssp CCBCHHHHHHHHHHHTTCSSCCTTCEEEE-CCSCBSEEEEESSCCHHHHHH
T ss_pred ccCcHHHHHHHHHHhcCcccCCCCceeee-ccccccEEEEEECCCHHHHHH
Confidence 47788999999999999555677788888 555557999999999888775
No 10
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=7.73 E-value=1.8e+02 Score=21.66 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=24.3
Q ss_pred HHHHHhHhhH----hhccCCceEEEEec-----CCCCCcchHHHHHHH
Q 031142 29 EWNALLQPKI----LSFLCSHLDISLTT-----GERLNHSEVFSAIQN 67 (165)
Q Consensus 29 ~~i~~~~~~l----~~~~s~~~ti~I~e-----~~~~~~N~ly~Aa~~ 67 (165)
+++.+.+..+ ..+|+..+||+|.. ...+..|+++..|+.
T Consensus 50 ~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~ 97 (151)
T 3oq0_A 50 DLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKK 97 (151)
T ss_dssp HHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHH
T ss_pred HHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHH
Confidence 4555555555 44678889999932 224667888655543
Done!