Query 031142
Match_columns 165
No_of_seqs 110 out of 285
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 15:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031142.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031142hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e29a1 d.58.7.5 (A:8-92) ATP- 76.1 0.22 1.6E-05 32.6 -0.3 78 36-115 4-82 (85)
2 d2bvya1 b.1.18.2 (A:371-464) B 22.9 13 0.00095 23.2 1.0 41 74-116 19-63 (94)
3 d2zjrq1 d.12.1.1 (Q:2-94) Ribo 18.9 66 0.0048 20.2 4.0 59 46-107 24-92 (93)
4 d2h6la1 d.290.1.3 (A:1-138) Hy 13.8 28 0.002 23.1 1.0 24 81-104 2-25 (138)
5 d2j01x1 d.12.1.1 (X:3-95) Ribo 11.9 33 0.0024 21.7 0.9 58 50-108 26-93 (93)
6 d1v0aa1 b.18.1.30 (A:4-170) En 9.7 45 0.0033 22.4 1.0 20 97-117 2-21 (167)
7 d1auua_ b.35.2.1 (A:) SacY {Ba 9.3 86 0.0063 17.8 2.1 20 88-107 8-27 (55)
8 d1jb0i_ f.23.17.1 (I:) Subunit 9.3 46 0.0034 17.6 0.7 8 151-158 7-14 (38)
9 d2qqra1 b.34.9.1 (A:897-955) J 8.6 1.9E+02 0.014 16.6 3.8 36 95-143 3-38 (59)
10 d1iv8a1 b.71.1.1 (A:654-720) M 8.6 2E+02 0.014 16.6 4.6 36 78-113 19-54 (67)
No 1
>d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.14 E-value=0.22 Score=32.62 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=57.1
Q ss_pred hhHhhccCCceEEEEecCCC-CCcchHHHHHHHHhhccccccccceeeeecCCCcceEEecCCCceeEeccCCeEEEEEE
Q 031142 36 PKILSFLCSHLDISLTTGER-LNHSEVFSAIQNYLSIKASKHAARFKADVVEDSQSLVLSMEDKEEVTDEFERVNVWWEL 114 (165)
Q Consensus 36 ~~l~~~~s~~~ti~I~e~~~-~~~N~ly~Aa~~YLstk~s~~a~rL~~~~~~~~~~~~lsld~~e~V~D~F~Gv~v~W~~ 114 (165)
|+|+..-.-+.|+.+..+.. ....-+|...+.||+.-+....+++++.+++++--+-+.-+.-+++.|.+++. .|.+
T Consensus 4 RSLLts~~g~~T~~l~~~~~i~~~~y~w~~Lr~~L~e~~~~~I~~M~l~kd~~GavFDVpse~~~~i~~~W~ds--r~~l 81 (85)
T d2e29a1 4 RSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWHDS--DWIL 81 (85)
T ss_dssp CCCCCCCCCEEEEEEECSSCCSSTHHHHHHHHHHSCHHHHTTCEEEEECTTSSEEEEEEEHHHHHHHHHHCCSS--SCEE
T ss_pred ccccccCCCcEEEEEecCccccccHHHHHHHHHHccHHHHHhhheeEEecCCCEEEEeccHHHHHHHHHHhccc--ceEE
Confidence 45556666678998855433 45688999999999998888889988877655554445555567888889886 4876
Q ss_pred e
Q 031142 115 G 115 (165)
Q Consensus 115 ~ 115 (165)
.
T Consensus 82 s 82 (85)
T d2e29a1 82 S 82 (85)
T ss_dssp E
T ss_pred e
Confidence 4
No 2
>d2bvya1 b.1.18.2 (A:371-464) Beta-1,4-mannanase domain 2 (postcatalytic) {Cellulomonas fimi [TaxId: 1708]}
Probab=22.93 E-value=13 Score=23.16 Aligned_cols=41 Identities=20% Similarity=0.463 Sum_probs=25.6
Q ss_pred cccccceeeeecCCCcceEEecCCCceeEec----cCCeEEEEEEee
Q 031142 74 SKHAARFKADVVEDSQSLVLSMEDKEEVTDE----FERVNVWWELGK 116 (165)
Q Consensus 74 s~~a~rL~~~~~~~~~~~~lsld~~e~V~D~----F~Gv~v~W~~~~ 116 (165)
.|..-|++++. .+-+++.+.+..|..|+|. |+|+ +||+.--
T Consensus 19 apttvrvrvgg-tdvqsvtvevaqggtvvdtldlaydga-lwwtapw 63 (94)
T d2bvya1 19 APTTVRVRVGG-TDVQSVTVEVAQGGTVVDTLDLAYDGA-LWWTAPW 63 (94)
T ss_dssp SCEEEEEEEES-SCEEEEEEEEEC---CCEEEECEECSS-SCEEEEE
T ss_pred CCceEEEEEcC-cceeEEEEEEecCCEEEEEEeeeccce-EEEecCC
Confidence 34455666644 3456788899999999997 6774 7887543
No 3
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]}
Probab=18.91 E-value=66 Score=20.17 Aligned_cols=59 Identities=10% Similarity=0.242 Sum_probs=38.8
Q ss_pred eEEEEecCCCCCcchHHHHHHHHhhcccc--------ccccce--eeeecCCCcceEEecCCCceeEeccCC
Q 031142 46 LDISLTTGERLNHSEVFSAIQNYLSIKAS--------KHAARF--KADVVEDSQSLVLSMEDKEEVTDEFER 107 (165)
Q Consensus 46 ~ti~I~e~~~~~~N~ly~Aa~~YLstk~s--------~~a~rL--~~~~~~~~~~~~lsld~~e~V~D~F~G 107 (165)
.++.++ .+....|+=+|++..-.-+.. +..+|. ..++-.+-+...++|.+|+.| |-|+|
T Consensus 24 y~F~V~--~~atK~~Ik~ave~lf~VkV~~Vnt~~~~gK~kr~~~~~g~~~~~KKAiVtL~~g~~I-~~~~g 92 (93)
T d2zjrq1 24 YSFWVS--PKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLAEGQSI-EALAG 92 (93)
T ss_dssp CEEEEC--SSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCCCCCCCBEEEEEECCSSCCC-SSTTT
T ss_pred EEEEEe--CCCCHHHHHHHHHHHcCCCeEEEEEEEeCCCceEECCcceecCCCEEEEEEcCCcCcc-cccCC
Confidence 444443 567788999999998876541 112332 223335557899999999885 77776
No 4
>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.76 E-value=28 Score=23.09 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=19.2
Q ss_pred eeeecCCCcceEEecCCCceeEec
Q 031142 81 KADVVEDSQSLVLSMEDKEEVTDE 104 (165)
Q Consensus 81 ~~~~~~~~~~~~lsld~~e~V~D~ 104 (165)
++...+.++.+.+.+++||++.+.
T Consensus 2 ~~~e~~~gr~~~~rl~~Gedl~~~ 25 (138)
T d2h6la1 2 KVFEFEVGKGFLLRLDYGKDLVRQ 25 (138)
T ss_dssp EEEEEECCEEEEEECCTTSBHHHH
T ss_pred ceEEeeCCCEEEEEECCCChHHHH
Confidence 345556678899999999999886
No 5
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]}
Probab=11.89 E-value=33 Score=21.68 Aligned_cols=58 Identities=10% Similarity=0.216 Sum_probs=36.6
Q ss_pred EecCCCCCcchHHHHHHHHhhcccc--------ccccce--eeeecCCCcceEEecCCCceeEeccCCe
Q 031142 50 LTTGERLNHSEVFSAIQNYLSIKAS--------KHAARF--KADVVEDSQSLVLSMEDKEEVTDEFERV 108 (165)
Q Consensus 50 I~e~~~~~~N~ly~Aa~~YLstk~s--------~~a~rL--~~~~~~~~~~~~lsld~~e~V~D~F~Gv 108 (165)
+.-..+....|+=.|++..-+-+.. +..+|. ..++-++-+...++|.+|++ .|-|+|+
T Consensus 26 F~V~~~atK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~~g~~~~~KKA~V~L~~g~~-I~~~~g~ 93 (93)
T d2j01x1 26 FWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVAPGQK-IEALEGL 93 (93)
T ss_dssp EECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCCCCSCCCCBCCBCCSTTTCCS-SSSTTC-
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCeeEEEEEEeCCceeEeCCcccccCCCEEEEEEcCCcCE-ecccCCC
Confidence 3334567778888888887765531 112332 22333556789999999877 6888875
No 6
>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]}
Probab=9.69 E-value=45 Score=22.45 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=15.6
Q ss_pred CCceeEeccCCeEEEEEEeee
Q 031142 97 DKEEVTDEFERVNVWWELGKN 117 (165)
Q Consensus 97 ~~e~V~D~F~Gv~v~W~~~~~ 117 (165)
.||.|.|.|+|. ..|..+..
T Consensus 2 ~ge~vidDFe~~-~~W~~~~~ 21 (167)
T d1v0aa1 2 VGEKMLDDFEGV-LNWGSYSG 21 (167)
T ss_dssp BSEEEEECSSSS-CCCEEEEE
T ss_pred CccEEEEcCcCC-ccceecCC
Confidence 589999999997 47876553
No 7
>d1auua_ b.35.2.1 (A:) SacY {Bacillus subtilis [TaxId: 1423]}
Probab=9.31 E-value=86 Score=17.78 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=13.1
Q ss_pred CcceEEecCCCceeEeccCC
Q 031142 88 SQSLVLSMEDKEEVTDEFER 107 (165)
Q Consensus 88 ~~~~~lsld~~e~V~D~F~G 107 (165)
+++++++.|+|+|+.=.=.|
T Consensus 8 NNNvvl~~d~~~E~Iv~GkG 27 (55)
T d1auua_ 8 NHNAIVVKDQNEEKILLGAG 27 (55)
T ss_dssp SSSEEEEECSSSEEEEECTT
T ss_pred cCeEEEEEeCCcEEEEEEcc
Confidence 34577777888887654333
No 8
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=9.26 E-value=46 Score=17.63 Aligned_cols=8 Identities=13% Similarity=0.542 Sum_probs=6.0
Q ss_pred ccchhhHh
Q 031142 151 GSYVNHVL 158 (165)
Q Consensus 151 ~sYLp~Vl 158 (165)
.+|||.|+
T Consensus 7 AsyLPwI~ 14 (38)
T d1jb0i_ 7 ASFLPWIF 14 (38)
T ss_dssp TTTHHHHH
T ss_pred HHhcchhH
Confidence 47888875
No 9
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.61 E-value=1.9e+02 Score=16.57 Aligned_cols=36 Identities=8% Similarity=0.254 Sum_probs=22.3
Q ss_pred cCCCceeEeccCCeEEEEEEeeeccccccccccCCCcccceEEEEEecC
Q 031142 95 MEDKEEVTDEFERVNVWWELGKNISRREFQFSIYPAAEEKRYYKLTFHK 143 (165)
Q Consensus 95 ld~~e~V~D~F~Gv~v~W~~~~~~~~~~~~~~~~~~~~e~r~feLsF~k 143 (165)
+.-||.|.-.-..-+.-|+-+.... ..-+||..|+.
T Consensus 3 i~~Gq~VI~KhkNgryY~c~V~~~~-------------~qtfyeV~FdD 38 (59)
T d2qqra1 3 ITAGQKVISKHKNGRFYQCEVVRLT-------------TETFYEVNFDD 38 (59)
T ss_dssp CCTTCEEEEECTTSSEEEEEEEEEE-------------EEEEEEEEETT
T ss_pred cccccEEEEEccCCcEEEEEEEEee-------------eEEEEEEEecC
Confidence 5567777777666666666555332 24477888753
No 10
>d1iv8a1 b.71.1.1 (A:654-720) Maltooligosyl trehalose synthase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=8.56 E-value=2e+02 Score=16.61 Aligned_cols=36 Identities=17% Similarity=0.054 Sum_probs=29.1
Q ss_pred cceeeeecCCCcceEEecCCCceeEeccCCeEEEEE
Q 031142 78 ARFKADVVEDSQSLVLSMEDKEEVTDEFERVNVWWE 113 (165)
Q Consensus 78 ~rL~~~~~~~~~~~~lsld~~e~V~D~F~Gv~v~W~ 113 (165)
+-|-+-+.+++-+--+.++.|.+-+|+..|-+++=+
T Consensus 19 kilviiktkgs~n~~~~~e~~~~ytdv~t~e~i~~~ 54 (67)
T d1iv8a1 19 KILVIIKTKGSVNYKLKLEEGAIYTDVLTGEEIKKE 54 (67)
T ss_dssp TEEEEEESCTTCCEEEECCSSCEEEETTTCCEEESE
T ss_pred EEEEEEecccccceeeeeccCcEEEeeecChheeee
Confidence 345566778888899999999999999999877543
Done!