BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031143
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S1Z1|UTP11_ORYSJ Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza
sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2
Length = 229
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/138 (73%), Positives = 124/138 (89%)
Query: 1 MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
MSS RNAI RRAHKERAQP+SRKKFGLLEKHKDY+VRAKA+ +KEETIR+LKEKA+FRNP
Sbjct: 1 MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60
Query: 61 DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
DEFY KMI +K VDG+HR + EANKYT++EL+L+KT+D+GYILQ +QSE+ KIEKL++ML
Sbjct: 61 DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSML 120
Query: 121 HSLDSNLSSRHVYYAEDR 138
H LD+ ++HVY+AEDR
Sbjct: 121 HELDNKRPNKHVYFAEDR 138
>sp|Q9M223|UTP11_ARATH Probable U3 small nucleolar RNA-associated protein 11
OS=Arabidopsis thaliana GN=At3g60360 PE=1 SV=1
Length = 228
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 112/138 (81%)
Query: 1 MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
MSS RNAIPR AHKER+QP++RK+FG+LEKHKDY++RA AY KK+ET++ L++KAAF+NP
Sbjct: 1 MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60
Query: 61 DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
DEF KMI +K VDG HR + E NKY+ EEL++MKTQDIGY+ QK QSE+NKI+KLT L
Sbjct: 61 DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASL 120
Query: 121 HSLDSNLSSRHVYYAEDR 138
S RHVYYAEDR
Sbjct: 121 QCTGDQSSRRHVYYAEDR 138
>sp|Q55C50|UTP11_DICDI Probable U3 small nucleolar RNA-associated protein 11
OS=Dictyostelium discoideum GN=utp11 PE=3 SV=1
Length = 250
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 93/136 (68%), Gaps = 6/136 (4%)
Query: 5 RNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFY 64
R +P+RA +ER QP+S KK G LE+ KDYV RAK Y K +T+++LK +AAF+NPDEF
Sbjct: 7 RRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFKNPDEFN 66
Query: 65 LKMIKTKIVDGVHRLESEANKYT--QEELILMKTQDIGYILQKLQSERNKIEKLTTMLHS 122
KMI +K+VDGVH SE +K + +E++I +KTQDI Y+ K +++ KIE+L L
Sbjct: 67 YKMISSKLVDGVH---SEISKTSLKKEQIIDIKTQDILYLQSKRRADDKKIERLQATLQY 123
Query: 123 LDSNL-SSRHVYYAED 137
+DS L + + Y +D
Sbjct: 124 MDSGLEPTEQIIYVDD 139
>sp|Q9Y3A2|UTP11_HUMAN Probable U3 small nucleolar RNA-associated protein 11 OS=Homo
sapiens GN=UTP11L PE=1 SV=2
Length = 253
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 11 RAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKT 70
R H+ER+QP RK GLLEK KDY +RA YRKK+E ++ L++KA +NPDEFY KM +
Sbjct: 14 REHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRV 73
Query: 71 KIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNLS 128
K+ DGVH ++ + T E+L LM+TQD+ YI K +E KIE+L + LH LD
Sbjct: 74 KLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ 133
Query: 129 SRHVYY 134
++HV++
Sbjct: 134 NKHVFF 139
>sp|Q8R5K5|UTP11_RAT Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus
norvegicus GN=Utp11l PE=2 SV=1
Length = 253
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 2/126 (1%)
Query: 11 RAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKT 70
R ++ER+QP RK GLLEK KDY +RA YRKK+E ++ L++KA +NPDEFY KM +
Sbjct: 14 REYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRV 73
Query: 71 KIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNLS 128
K+ DGVH ++ + T E+L LM+TQD+ YI K +E KIE+L + LH LD
Sbjct: 74 KLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ 133
Query: 129 SRHVYY 134
+RHV++
Sbjct: 134 NRHVFF 139
>sp|Q9CZJ1|UTP11_MOUSE Probable U3 small nucleolar RNA-associated protein 11 OS=Mus
musculus GN=Utp11l PE=2 SV=1
Length = 253
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 11 RAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKT 70
R H+ER+QP RK+ GLLEK KDY +RA Y KK++ +R L++KA +NPDEFY KM +
Sbjct: 14 REHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTRA 73
Query: 71 KIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD--SNLS 128
K+ DGVH + + T E+L LM+TQDI YI K +E KIE+L + LH LD
Sbjct: 74 KLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ 133
Query: 129 SRHVYY 134
+HV++
Sbjct: 134 KKHVFF 139
>sp|Q10106|UTP11_SCHPO Probable U3 small nucleolar RNA-associated protein 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC18G6.06 PE=3 SV=1
Length = 249
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 2 SSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPD 61
SS +NA R+ H+ERAQP R+K+GLLEK KDY RA+ Y+ K++ ++RL+EKA RNPD
Sbjct: 3 SSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPD 62
Query: 62 EFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLH 121
EFY +M K +GV + E + + + ++KTQDIG+I ER KI+ L +H
Sbjct: 63 EFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHRNVERAKIDHLEQQMH 122
Query: 122 SL----DSNLSSRHVYYAED 137
++ + N S +H + ++
Sbjct: 123 TVGAHRNKNESRKHTIFVDN 142
>sp|Q9W3C0|UTP11_DROME Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila
melanogaster GN=CG1789 PE=2 SV=1
Length = 237
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 91/144 (63%), Gaps = 4/144 (2%)
Query: 1 MSSRRNAIP--RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFR 58
MSS +NA ++ H+ER QP+SR+ G LEK KDY RA +KK++T++ L +A +
Sbjct: 1 MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNK 60
Query: 59 NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTT 118
NPDEFY MI +K+ + H + +++T E+L LM+TQD+ Y++ K ER KIE+L
Sbjct: 61 NPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQDLKYVVMKRTMERKKIERLKA 120
Query: 119 MLHSLDS--NLSSRHVYYAEDRFM 140
L +D+ +++ + + ED +M
Sbjct: 121 SLVDVDAIKGAANKRIKFDEDGYM 144
>sp|Q09462|UTP11_CAEEL Probable U3 small nucleolar RNA-associated protein 11
OS=Caenorhabditis elegans GN=C16C10.2 PE=3 SV=1
Length = 262
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 83/125 (66%), Gaps = 5/125 (4%)
Query: 10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
+R H+ER+QP++R+K+G LEK KDY +RA+ Y+KK +TI++LK+ A +N DE++ M+
Sbjct: 14 QRQHRERSQPEARRKYGELEKKKDYKLRAEDYQKKRDTIKKLKKSAMDKNQDEYHHHMVN 73
Query: 70 TKI-VDGVH---RLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLDS 125
++ DG H + E+E + TQ + L +D+ Y+ KL E+ KI+++ LH DS
Sbjct: 74 SETWADGRHFDKKTEAEETE-TQIQKKLGSLKDLEYVKFKLNEEKKKIDEMKGELHFADS 132
Query: 126 NLSSR 130
+L+ +
Sbjct: 133 SLNGK 137
>sp|P34247|UTP11_YEAST U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP11 PE=1
SV=2
Length = 250
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 7/119 (5%)
Query: 8 IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
+ ++ H+ER+Q SR ++G LEKHKDYV RA+ + +K+ T++ L+EKA RNPDE+Y M
Sbjct: 8 VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAM 67
Query: 68 ------IKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
K ++ H E E + +++ L+KTQD Y+ Q E K+EK L
Sbjct: 68 HSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYVRTLRQIELKKLEKGAKQL 125
>sp|A6ZZL7|UTP11_YEAS7 U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces
cerevisiae (strain YJM789) GN=UTP11 PE=3 SV=1
Length = 250
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 7/119 (5%)
Query: 8 IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
+ ++ H+ER+Q SR ++G LEKHKDYV RA+ + +K+ T++ L+EKA RNPDE+Y M
Sbjct: 8 VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAM 67
Query: 68 ------IKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
K ++ H E E + +++ L+KTQD Y+ Q E K+EK L
Sbjct: 68 HSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYVRTLRQIELKKLEKGAKQL 125
>sp|B5VM59|UTP11_YEAS6 U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=UTP11 PE=3 SV=1
Length = 250
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 7/119 (5%)
Query: 8 IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
+ ++ H+ER+Q SR ++G LEKHKDYV RA+ + +K+ T++ L+EKA RNPDE+Y M
Sbjct: 8 VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAM 67
Query: 68 ------IKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTML 120
K ++ H E E + +++ L+KTQD Y+ Q E K+EK L
Sbjct: 68 HSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYVRTLRQIELKKLEKGAKQL 125
>sp|Q9U178|UTP11_LEIMA Probable U3 small nucleolar RNA-associated protein 11
OS=Leishmania major GN=L374.02 PE=3 SV=1
Length = 361
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 8 IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
+ R+ H ER+QP+SR+ G LEKHKD+V+RAK + K ++ +K AA RNPDEF + M
Sbjct: 18 LKRKTHLERSQPKSRQHLGQLEKHKDHVLRAKKRKVKVRRLQEIKRAAAQRNPDEFNIGM 77
Query: 68 IKT 70
K
Sbjct: 78 TKA 80
>sp|Q8I4V5|UTP11_PLAF7 Probable U3 small nucleolar RNA-associated protein 11 OS=Plasmodium
falciparum (isolate 3D7) GN=PFL2295w PE=3 SV=1
Length = 212
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 12/137 (8%)
Query: 1 MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
MS+ +N IP+R + ER Q + R G LEK DY R + Y+KK++ LKEK +NP
Sbjct: 1 MSNFKNIIPKRTYLERGQAKHRLHLGELEKKVDYGKRREIYKKKKKIENVLKEKIMTKNP 60
Query: 61 DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER----NKIEKL 116
DEF+ M+ +++ +E N +EE +L K + Q+L+ + NK++K+
Sbjct: 61 DEFHTGMVHSRV--------TEDNVLVREEKVLKKEVQLKNKRQELKEQTNDLYNKLKKI 112
Query: 117 TTMLHSLDSNLSSRHVY 133
L + N+ R+V+
Sbjct: 113 NKRLSNYQMNIPLRYVF 129
>sp|Q80TC5|POGK_MOUSE Pogo transposable element with KRAB domain OS=Mus musculus GN=Pogk
PE=2 SV=2
Length = 607
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 20 QSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRL 79
Q+ K+FG+LEK+ + K + +RR AFR P ++ ++ + V +
Sbjct: 219 QAAKQFGVLEKNVRDWRKVKPQLQNAHAMRR-----AFRGPKNGRFALVDQRVAEYVRYM 273
Query: 80 ESEANKYTQEELIL 93
+++ + T+E + L
Sbjct: 274 QAKGDPITREAMQL 287
>sp|Q9P215|POGK_HUMAN Pogo transposable element with KRAB domain OS=Homo sapiens GN=POGK
PE=1 SV=2
Length = 609
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 20 QSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRL 79
Q+ K+FG+LEK+ + K + +RR AFR P ++ ++ + V +
Sbjct: 219 QAAKQFGVLEKNVRDWRKVKPQLQNAHAMRR-----AFRGPKNGRFALVDQRVAEYVRYM 273
Query: 80 ESEANKYTQEELIL 93
+++ + T+E + L
Sbjct: 274 QAKGDPITREAMQL 287
>sp|Q54DV3|Y2016_DICDI von Willebrand factor A domain-containing protein DDB_G0292016
OS=Dictyostelium discoideum GN=DDB_G0292016 PE=4 SV=1
Length = 918
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 23 KKFGLLEKHKDYVVRAKAYRKKEETIRRL 51
KK+GL+ KH Y+V A + EET++ +
Sbjct: 597 KKYGLVSKHTSYIVTADSDNVTEETMKTV 625
>sp|Q54DU5|Y2028_DICDI von Willebrand factor A domain-containing protein DDB_G0292028
OS=Dictyostelium discoideum GN=DDB_G0292028 PE=4 SV=1
Length = 932
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 23 KKFGLLEKHKDYVVRAKAYRKKEETIRRLK 52
K+FGL+ KH Y+V A + + EET++ ++
Sbjct: 626 KRFGLVSKHTSYIVTADSDKVTEETMKTVQ 655
>sp|Q96HP0|DOCK6_HUMAN Dedicator of cytokinesis protein 6 OS=Homo sapiens GN=DOCK6 PE=1 SV=3
Length = 2047
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 44 KEETIRRLKEKAAFRNPDEF-------YLKMIKTKIVDGVHRLESEA----NKYTQEELI 92
++E +RR +E++ F NP+ + K ++ +E EA N T+ L+
Sbjct: 1332 RQEMVRRSRERSPFGNPENVRWRKSVTHWKQTSDRVDKTKDEMEHEALVEGNLATEASLV 1391
Query: 93 LMKTQDIGYILQKLQSERNKI--EKLTTMLHSLDSNLSSRHVYY--AEDRFMLSKLP 145
++ T +I L R + L +L+SL S S+ + + A R ++SK P
Sbjct: 1392 VLDTLEIIVQTVMLSEARESVLGAVLKVVLYSLGSAQSALFLQHGLATQRALVSKFP 1448
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,862,016
Number of Sequences: 539616
Number of extensions: 2048537
Number of successful extensions: 8641
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 8564
Number of HSP's gapped (non-prelim): 163
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)