Query 031143
Match_columns 165
No_of_seqs 116 out of 229
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jws_A GA88; evolution, foldin 43.1 7.5 0.00026 26.0 0.9 35 42-80 11-46 (56)
2 2fs1_A PSD-1; solution structu 20.9 30 0.001 23.0 0.8 33 42-78 11-44 (56)
3 1gjs_A Immunoglobulin G bindin 15.9 47 0.0016 22.7 0.9 33 42-78 22-55 (65)
4 1q2z_A ATP-dependent DNA helic 15.5 2E+02 0.0068 20.8 4.3 44 47-91 69-112 (120)
5 2l9s_A PHD finger protein 12; 10.9 1.4E+02 0.0049 18.9 2.0 16 48-63 14-29 (45)
6 3a5t_A Transcription factor MA 9.3 5.5E+02 0.019 18.6 5.6 40 85-124 27-71 (107)
7 2ykt_A Brain-specific angiogen 8.5 2.2E+02 0.0074 23.3 2.8 26 31-56 127-152 (253)
8 3iz5_K 60S ribosomal protein L 8.0 3.5E+02 0.012 21.8 3.8 23 35-57 166-188 (206)
9 3ok8_A Brain-specific angiogen 7.9 1.6E+02 0.0055 24.1 1.7 30 32-62 126-155 (222)
10 4fla_A Regulation of nuclear P 7.7 3.4E+02 0.012 20.6 3.4 23 35-57 120-142 (152)
No 1
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=43.11 E-value=7.5 Score=25.97 Aligned_cols=35 Identities=40% Similarity=0.640 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHhhCCCchhhhhhh-hhhcCCccccc
Q 031143 42 RKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHRLE 80 (165)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~Gvh~~~ 80 (165)
..|...|..|...+- -||||.-|| +++++||.-.+
T Consensus 11 ~aK~~ai~el~~agi----~e~~~n~innakTVeGV~alk 46 (56)
T 2jws_A 11 QAKEEAIKELVDAGI----AEKYIKLIANAKTVEGVWTLK 46 (56)
T ss_dssp HHHHHHHHHHHHHTC----CHHHHHHHHTCSCHHHHHHHH
T ss_pred hhhHhHHHHHHHhhh----HHHHHHHhhcccccccccchH
Confidence 467788888887664 389998876 68888876443
No 2
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=20.86 E-value=30 Score=23.01 Aligned_cols=33 Identities=36% Similarity=0.716 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHhhCCCchhhhhhh-hhhcCCccc
Q 031143 42 RKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHR 78 (165)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~Gvh~ 78 (165)
..|+..|+.|.+--. ..||+.-|| ++|++||.-
T Consensus 11 eAKe~Ai~El~~~GI----sd~y~~~In~AkTvEgv~~ 44 (56)
T 2fs1_A 11 QAKEAAIKELKQYGI----GDYYIKLINNAKTVEGVES 44 (56)
T ss_dssp HHHHHHHHHHHHHCC----CHHHHHHHHTCSSSHHHHH
T ss_pred HHHHHHHHHHHHcCc----hHHHHHHhhhhhhHHHHHH
Confidence 345666666654322 678888887 688888754
No 3
>1gjs_A Immunoglobulin G binding protein G; immunoglobulin-binding protein, bacterial surface protein, albumin binding; NMR {Streptococcus SP} SCOP: a.8.1.2 PDB: 1gjt_A
Probab=15.85 E-value=47 Score=22.70 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHhhCCCchhhhhhh-hhhcCCccc
Q 031143 42 RKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHR 78 (165)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~Gvh~ 78 (165)
..|+..|..|.+--. ..||+.-|| ++|++||..
T Consensus 22 eAKe~Ai~EL~~~GI----sd~y~~~In~AkTvEgV~a 55 (65)
T 1gjs_A 22 EAKVLANRELDKYGV----SDYYKNLINNAKTVEGVKA 55 (65)
T ss_dssp HHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHcCc----cHHHHHhhhccchHHHHHH
Confidence 456666766654322 678888877 588888754
No 4
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=15.48 E-value=2e+02 Score=20.75 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhCCCchhhhhhhhhhcCCccccccccCCCCHHHH
Q 031143 47 TIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEEL 91 (165)
Q Consensus 47 ~lk~Lr~KA~~rNpDEFyf~M~~sk~~~Gvh~~~~~~~~~t~e~~ 91 (165)
=|..||.+...++=.+|...++..+. +-+..........|+++-
T Consensus 69 Fl~~Lk~~~~~~~l~~FW~~iv~~~l-gLI~~~E~~~S~vt~eeA 112 (120)
T 1q2z_A 69 FLKALQEKVEIKQLNHFWEIVVQDGI-TLITKEEASGSSVTAEEA 112 (120)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHTTC-CSCCSTTSSSCCCCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHCCc-CCCcHhhccccCCCHHHH
Confidence 47788888888887889886654321 222222233456777764
No 5
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=10.95 E-value=1.4e+02 Score=18.87 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhCCCch
Q 031143 48 IRRLKEKAAFRNPDEF 63 (165)
Q Consensus 48 lk~Lr~KA~~rNpDEF 63 (165)
+..|=+.|...||-+|
T Consensus 14 f~~Li~aA~~~NP~qF 29 (45)
T 2l9s_A 14 FELLIAAAMERNPTQF 29 (45)
T ss_dssp HHHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHHhChhhh
Confidence 4456678999999988
No 6
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=9.26 E-value=5.5e+02 Score=18.56 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=33.9
Q ss_pred CCCHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHhhhcccC
Q 031143 85 KYTQEELILMKTQ-----DIGYILQKLQSERNKIEKLTTMLHSLD 124 (165)
Q Consensus 85 ~~t~e~~kl~ktQ-----Dl~Yv~~~~~~e~kKiekL~~~L~~~~ 124 (165)
.+|.+++..||.+ +=+|-+..|..-..+++.|+.+...+.
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~ 71 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQ 71 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999988875 889999999999999999987766654
No 7
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=8.46 E-value=2.2e+02 Score=23.28 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=21.2
Q ss_pred cccHHHHHHHHhHHHHHHHHHHHHHH
Q 031143 31 HKDYVVRAKAYRKKEETIRRLKEKAA 56 (165)
Q Consensus 31 kKDY~~RA~dy~~K~~~lk~Lr~KA~ 56 (165)
.++|+.++.++.+.+..+++|++|+.
T Consensus 127 ~~e~k~~~~~l~K~~~e~~kl~KK~k 152 (253)
T 2ykt_A 127 QTEQRSKGDALDKCQAELKKLRKKSQ 152 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhHhHHHHHHHHHHHHHhhcc
Confidence 47888899999999999999998876
No 8
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=8.05 E-value=3.5e+02 Score=21.80 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHh
Q 031143 35 VVRAKAYRKKEETIRRLKEKAAF 57 (165)
Q Consensus 35 ~~RA~dy~~K~~~lk~Lr~KA~~ 57 (165)
+.+|..|..|+..+..|+.+|..
T Consensus 166 k~k~~~~y~~k~~~~~~~~~a~~ 188 (206)
T 3iz5_K 166 KEKAKVSYDRRKQLAKLRVKAEK 188 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999998865
No 9
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=7.86 E-value=1.6e+02 Score=24.06 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.5
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHhhCCCc
Q 031143 32 KDYVVRAKAYRKKEETIRRLKEKAAFRNPDE 62 (165)
Q Consensus 32 KDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDE 62 (165)
..|+.+|..|.+-+..|++++++. .+||..
T Consensus 126 ~e~k~~~~~leK~~~elkK~~rks-qk~~~k 155 (222)
T 3ok8_A 126 IEYRHRAANLEKCMSELWRMERKR-DKNARE 155 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CTTHHH
T ss_pred HHhhHHHHHHHHHHHHHHHhhhhh-ccChHH
Confidence 357789999999999999999775 489977
No 10
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=7.66 E-value=3.4e+02 Score=20.62 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=19.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHh
Q 031143 35 VVRAKAYRKKEETIRRLKEKAAF 57 (165)
Q Consensus 35 ~~RA~dy~~K~~~lk~Lr~KA~~ 57 (165)
..++.+|+.|.++++.++.+...
T Consensus 120 e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 120 EKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999887654
Done!