Query 031143
Match_columns 165
No_of_seqs 116 out of 229
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 15:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031143.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031143hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ya1 a.8.1.2 (A:1-53) PAB { 47.3 4.2 0.0003 25.2 1.7 34 42-78 9-43 (53)
2 d1gjsa_ a.8.1.2 (A:) IgG bindi 42.8 3.4 0.00025 26.7 0.7 47 28-78 8-55 (65)
3 d1fjeb1 d.58.7.1 (B:1-91) Nucl 19.4 56 0.0041 20.2 3.7 33 121-159 3-36 (91)
4 d1weza_ d.58.7.1 (A:) Heteroge 15.9 45 0.0033 21.0 2.6 26 127-158 12-37 (102)
5 d1whxa_ d.58.7.1 (A:) Probable 12.3 49 0.0035 20.7 1.9 26 127-158 7-32 (111)
6 d1rw2a_ a.118.19.1 (A:) C-term 10.8 1.1E+02 0.0078 21.6 3.5 43 47-92 100-144 (152)
7 d2cqpa1 d.58.7.1 (A:917-1002) 9.6 1.5E+02 0.011 17.5 3.5 27 126-158 5-31 (86)
8 d1smyd_ e.29.1.2 (D:) RNA-poly 7.1 33 0.0024 32.8 -0.9 34 59-107 1065-1098(1504)
9 d1s7oa_ a.4.13.3 (A:) Hypothet 6.6 3.3E+02 0.024 17.5 4.5 41 84-124 31-71 (106)
10 d1wi8a_ d.58.7.1 (A:) Eukaryot 6.2 2.1E+02 0.016 17.2 3.2 24 129-158 14-37 (104)
No 1
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=47.27 E-value=4.2 Score=25.22 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCchhhhhhhh-hhcCCccc
Q 031143 42 RKKEETIRRLKEKAAFRNPDEFYLKMIKT-KIVDGVHR 78 (165)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~s-k~~~Gvh~ 78 (165)
+.|++.|+.|++- ==..+|||..||. ||+.||..
T Consensus 9 ~AKe~AI~eLK~~---GIts~~y~~~InkaKTVEgV~a 43 (53)
T d2j5ya1 9 NAKEDAIAELKKA---GITSDFYFNAINKAKTVEEVNA 43 (53)
T ss_dssp HHHHHHHHHHHHT---TCCCHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHc---CccHHHHHHHHHhhhhHHHHHH
Confidence 4677778887753 2346899999984 78888754
No 2
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=42.79 E-value=3.4 Score=26.68 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=34.2
Q ss_pred ccccccHHHHHHHHhHHHHHHHHHHHHHHhhCCCchhhhhhh-hhhcCCccc
Q 031143 28 LEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHR 78 (165)
Q Consensus 28 LEKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~Gvh~ 78 (165)
=+||-|-+.-+.=-+.|+..++.|++--- .+|||..|| .||+.||.-
T Consensus 8 ~~k~ed~v~~~~L~~AKe~Ai~Elk~yGi----sdyy~nlIN~AKTVEGV~a 55 (65)
T d1gjsa_ 8 NAQHDEAVDANSLAEAKVLANRELDKYGV----SDYYKNLINNAKTVEGVKA 55 (65)
T ss_dssp CSSCCSSCTHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHcCc----hHHHHHHHhccchHHHHHH
Confidence 34555555555566788899999987654 589999998 588888753
No 3
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=19.39 E-value=56 Score=20.21 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=23.7
Q ss_pred cccC-CCCCCCeeEEeeCccccccCCCCCChhhHhhHhhh
Q 031143 121 HSLD-SNLSSRHVYYAEDRFMLSKLPFFSEGNNILDLLAI 159 (165)
Q Consensus 121 ~~~~-~~~~nkH~vFvd~~~e~~~~~fdT~~ell~R~~n~ 159 (165)
|+++ ..+....++|| .++|++++++-|...|-.
T Consensus 3 ~~~e~~~~~~~~~ifV------~nL~~~~te~~l~~~F~~ 36 (91)
T d1fjeb1 3 HMVEGSESTTPFNLFI------GNLNPNKSVAELKVAISE 36 (91)
T ss_dssp CCCSSSSCSSSEEEEE------ECCCTTSCHHHHHHHHHH
T ss_pred CCcCCCCCCCCcEEEE------eCccCcchHHHHHHHHhc
Confidence 4444 34556788998 467899999988887754
No 4
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.91 E-value=45 Score=20.96 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=18.3
Q ss_pred CCCCeeEEeeCccccccCCCCCChhhHhhHhh
Q 031143 127 LSSRHVYYAEDRFMLSKLPFFSEGNNILDLLA 158 (165)
Q Consensus 127 ~~nkH~vFvd~~~e~~~~~fdT~~ell~R~~n 158 (165)
+...|+|||- ++||+++++-|-.-|-
T Consensus 12 ~~~~~~v~v~------nLp~~~te~dl~~~F~ 37 (102)
T d1weza_ 12 STTGHCVHMR------GLPYRATENDIYNFFS 37 (102)
T ss_dssp CSSSCEEEEE------SCCTTCCHHHHHHSSC
T ss_pred CCCCCEEEEe------CCCCcCCHHHHHHHHh
Confidence 3456888874 6778888887776553
No 5
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.35 E-value=49 Score=20.65 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=19.5
Q ss_pred CCCCeeEEeeCccccccCCCCCChhhHhhHhh
Q 031143 127 LSSRHVYYAEDRFMLSKLPFFSEGNNILDLLA 158 (165)
Q Consensus 127 ~~nkH~vFvd~~~e~~~~~fdT~~ell~R~~n 158 (165)
...+++|||- ++|++|+.+.|..-|.
T Consensus 7 ~r~~~~l~V~------nLp~~~t~~~L~~~F~ 32 (111)
T d1whxa_ 7 GRSKTVILAK------NLPAGTLAAEIQETFS 32 (111)
T ss_dssp SEEEEEEEEE------SCCTTCCHHHHHHHHH
T ss_pred CCCCCEEEEE------CCCCCCCHHHHHhhhh
Confidence 3457899985 5778888888887774
No 6
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.80 E-value=1.1e+02 Score=21.57 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhCCCchhhhhhhhhhcCCcccccc--ccCCCCHHHHH
Q 031143 47 TIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLES--EANKYTQEELI 92 (165)
Q Consensus 47 ~lk~Lr~KA~~rNpDEFyf~M~~sk~~~Gvh~~~~--~~~~~t~e~~k 92 (165)
=|..|+.++..++-.+|....+..+. | .|... ..+..|.++.+
T Consensus 100 FL~~LK~~~l~~~l~~FW~~i~~~~l--g-LIs~~E~~~S~Vt~eeA~ 144 (152)
T d1rw2a_ 100 FLKALQEKVEIKQLNHFWEIVVQDGI--T-LITKEEASGSSVTAEEAK 144 (152)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHTC--S-SCSSSSSSSCSCCTHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcCC--c-cCChhhcccCCCCHHHHH
Confidence 36778888888887788866554443 2 23222 24568888765
No 7
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.56 E-value=1.5e+02 Score=17.46 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=17.5
Q ss_pred CCCCCeeEEeeCccccccCCCCCChhhHhhHhh
Q 031143 126 NLSSRHVYYAEDRFMLSKLPFFSEGNNILDLLA 158 (165)
Q Consensus 126 ~~~nkH~vFvd~~~e~~~~~fdT~~ell~R~~n 158 (165)
..++.++|||. ++|++++.+-|..-|.
T Consensus 5 g~p~~~~l~v~------nLp~~~~~~di~~~F~ 31 (86)
T d2cqpa1 5 GKPGPTIIKVQ------NMPFTVSIDEILDFFY 31 (86)
T ss_dssp CCCSSEEEEEE------SCCTTCCHHHHHHHTT
T ss_pred CCCCCCEEEEE------CCCCCCCHHHHHHHHh
Confidence 45567888875 4566766666665553
No 8
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]}
Probab=7.13 E-value=33 Score=32.79 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=24.4
Q ss_pred CCCchhhhhhhhhhcCCccccccccCCCCHHHHHHhhhhhHHHHHHHHH
Q 031143 59 NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQ 107 (165)
Q Consensus 59 NpDEFyf~M~~sk~~~Gvh~~~~~~~~~t~e~~kl~ktQDl~Yv~~~~~ 107 (165)
+|.|||||.+..| .| |..- -+||-|-||+.-++.
T Consensus 1065 tP~EFFFHtMGGR--EG----------LIDT---AVKTA~SGYLqRRLV 1098 (1504)
T d1smyd_ 1065 TVLEYFISSHGAR--KG----------GADT---ALRTADSGYLTRKLV 1098 (1504)
T ss_dssp CHHHHHHHHHHHH--HH----------HHHH---HHHHSCSHHHHHHHH
T ss_pred CHHHHHhhcCCCc--ch----------hhhh---hccccccchhhHHHH
Confidence 6889999887777 34 1111 269999999987775
No 9
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=6.56 E-value=3.3e+02 Score=17.51 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=32.1
Q ss_pred CCCCHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhcccC
Q 031143 84 NKYTQEELILMKTQDIGYILQKLQSERNKIEKLTTMLHSLD 124 (165)
Q Consensus 84 ~~~t~e~~kl~ktQDl~Yv~~~~~~e~kKiekL~~~L~~~~ 124 (165)
..+|..+|.-.-.=-.+=|......-.+++....+.||+++
T Consensus 31 ~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~~e~kL~l~~ 71 (106)
T d1s7oa_ 31 DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHMYS 71 (106)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHChHH
Confidence 35788888766666667788888888888888888888864
No 10
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.20 E-value=2.1e+02 Score=17.25 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=17.1
Q ss_pred CCeeEEeeCccccccCCCCCChhhHhhHhh
Q 031143 129 SRHVYYAEDRFMLSKLPFFSEGNNILDLLA 158 (165)
Q Consensus 129 nkH~vFvd~~~e~~~~~fdT~~ell~R~~n 158 (165)
..++|||- ++|++|+.+-|..-|.
T Consensus 14 p~~~v~V~------nLp~~~te~~l~~~f~ 37 (104)
T d1wi8a_ 14 PPYTAFLG------NLPYDVTEESIKEFFR 37 (104)
T ss_dssp SCEEEEEE------SCCSSCCHHHHHHHTT
T ss_pred CCCEEEEe------CCCCcCCHHHHHHHHH
Confidence 35899985 5667777777776664
Done!