BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031145
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PCE|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|C Chain C, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|D Chain D, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|E Chain E, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|F Chain F, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|G Chain G, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|H Chain H, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|3FV9|G Chain G, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|A Chain A, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|D Chain D, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|E Chain E, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|F Chain F, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|B Chain B, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|H Chain H, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|C Chain C, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
          Length = 386

 Score = 27.7 bits (60), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 143 PCLTYSDAQSLRETCATPILKQE 165
           PC ++++ +SLR  CA P+L  E
Sbjct: 228 PCASWAETKSLRARCALPLLLDE 250


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.131    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,906,414
Number of Sequences: 62578
Number of extensions: 114938
Number of successful extensions: 175
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 1
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)