BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031145
         (165 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q55403|Y575_SYNY3 Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=slr0575 PE=4 SV=1
          Length = 184

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 83  LAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLT---YGFPLAVIGMALKYAEL 139
           L K+S   +GL +G  L   GF AY       +++ L L    YG PL + G+ALK AEL
Sbjct: 2   LPKISLAAVGLTVGGILTITGFVAY-----ALDYATLNLAGFFYGIPLVLGGLALKAAEL 56

Query: 140 KPVPCL--TYSDAQSLRETCATPILKQ 164
           KP+P    T     +LR   ATP   Q
Sbjct: 57  KPIPFSQPTSEKIIALRNQLATPTQNQ 83


>sp|Q8CFS6|KCNV2_MOUSE Potassium voltage-gated channel subfamily V member 2 OS=Mus
           musculus GN=Kcnv2 PE=2 SV=1
          Length = 562

 Score = 32.3 bits (72), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 81  FTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELK 140
           F    ++FG+I  G+ IS+L   F  Y+S     E++A+    G  +  +  A K    K
Sbjct: 490 FAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTAIRRERG-KVNFMQRATK----K 544

Query: 141 PVPCLTYSDAQS 152
              CL+ S AQS
Sbjct: 545 MAECLSESHAQS 556


>sp|Q8CPC2|ACON_STAES Aconitate hydratase OS=Staphylococcus epidermidis (strain ATCC
           12228) GN=acnA PE=3 SV=1
          Length = 901

 Score = 30.4 bits (67), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%)

Query: 48  HRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAY 107
           H++ L ++A            T+   TLV  D  T      GV+G G+G      G    
Sbjct: 181 HQVNLEYLANVVHVRDVDGEKTAFPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAGMLGQ 240

Query: 108 FSIFPGSEWSALMLTYGFP 126
            S FP  E   + LT+  P
Sbjct: 241 PSYFPIPEVIGVRLTHSLP 259


>sp|Q5HPJ0|ACON_STAEQ Aconitate hydratase OS=Staphylococcus epidermidis (strain ATCC
           35984 / RP62A) GN=acnA PE=3 SV=1
          Length = 901

 Score = 30.4 bits (67), Expect = 5.1,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%)

Query: 48  HRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAY 107
           H++ L ++A            T+   TLV  D  T      GV+G G+G      G    
Sbjct: 181 HQVNLEYLANVVHVRDVDGEKTAFPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAGMLGQ 240

Query: 108 FSIFPGSEWSALMLTYGFP 126
            S FP  E   + LT+  P
Sbjct: 241 PSYFPIPEVIGVRLTHSLP 259


>sp|Q02142|LEUC_LACLA 3-isopropylmalate dehydratase large subunit OS=Lactococcus lactis
           subsp. lactis (strain IL1403) GN=leuC PE=3 SV=2
          Length = 460

 Score = 29.6 bits (65), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 64  PSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSY 102
           P S  T   KT+V  D  T    +FG I  G+G S + +
Sbjct: 113 PESGRTQPGKTIVCGDSHTATNGAFGAIAFGIGTSEVEH 151


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,694,364
Number of Sequences: 539616
Number of extensions: 2218491
Number of successful extensions: 5819
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5813
Number of HSP's gapped (non-prelim): 12
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)