Query 031145
Match_columns 165
No_of_seqs 68 out of 70
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 15:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jp3_A FXYD domain-containing 54.0 6.4 0.00022 27.7 1.9 35 75-109 4-38 (67)
2 2jo1_A Phospholemman; FXYD1, N 48.3 5.3 0.00018 28.5 0.8 33 77-109 5-37 (72)
3 2zxe_G FXYD10, phospholemman-l 47.7 7.1 0.00024 27.9 1.4 35 76-110 7-41 (74)
4 2ww9_B Protein transport prote 34.0 21 0.00071 25.5 2.0 21 88-108 47-67 (80)
5 1rh5_B Preprotein translocase 31.2 25 0.00085 24.6 2.0 21 89-109 35-55 (74)
6 2wwb_B SEC61gamma, protein tra 25.7 26 0.00088 24.2 1.3 20 89-108 34-53 (68)
7 3mp7_B Preprotein translocase 24.7 39 0.0013 22.7 2.0 20 89-108 31-50 (61)
8 3n2f_G Na+/K+ ATPase gamma sub 16.2 53 0.0018 19.7 1.1 27 79-105 1-27 (31)
9 1ijd_A Light-harvesting protei 14.6 68 0.0023 21.5 1.4 13 123-135 14-26 (53)
10 1nkz_A Light-harvesting protei 14.3 71 0.0024 21.5 1.4 13 123-135 14-26 (53)
No 1
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=54.03 E-value=6.4 Score=27.69 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=30.1
Q ss_pred eecCCCceeecccchhhhHhHHHHHHHhhhhhhhc
Q 031145 75 LVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFS 109 (165)
Q Consensus 75 ~v~d~~f~l~k~SlGsLgl~vG~iLtvvGf~AYft 109 (165)
.-+||+|.-+.=|+-.-|++.+++|.++|..--++
T Consensus 4 ~~e~dpF~YDY~tLRigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 4 VDKGSPFYYDWESLQLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp TSTTSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCcccchHHheecchhhHHHHHHHHHHHHHc
Confidence 45789999999999999999999999998876544
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=48.29 E-value=5.3 Score=28.51 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=27.9
Q ss_pred cCCCceeecccchhhhHhHHHHHHHhhhhhhhc
Q 031145 77 PDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFS 109 (165)
Q Consensus 77 ~d~~f~l~k~SlGsLgl~vG~iLtvvGf~AYft 109 (165)
++|+|.-+.=++-.-|++.+++|.++|.+--++
T Consensus 5 E~dPF~YDY~tLRiGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 5 EHDPFTYDYQSLQIGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp HHSGGGCSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccchHHhhccchHHHHHHHHHHHHHHHc
Confidence 678999999999999999999999988765443
No 3
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=47.65 E-value=7.1 Score=27.93 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=30.3
Q ss_pred ecCCCceeecccchhhhHhHHHHHHHhhhhhhhcc
Q 031145 76 VPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSI 110 (165)
Q Consensus 76 v~d~~f~l~k~SlGsLgl~vG~iLtvvGf~AYft~ 110 (165)
-+||+|.-+.=|+-.-|++.+++|.++|..--++.
T Consensus 7 ~~~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 7 DNDERFTYDYYRLRVVGLIVAAVLCVIGIIILLAG 41 (74)
T ss_dssp TCGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCcccchHHheeccchhHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999998766543
No 4
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=34.03 E-value=21 Score=25.50 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.3
Q ss_pred chhhhHhHHHHHHHhhhhhhh
Q 031145 88 FGVIGLGLGISLLSYGFGAYF 108 (165)
Q Consensus 88 lGsLgl~vG~iLtvvGf~AYf 108 (165)
+-.+.-..|..+.++||++|+
T Consensus 47 f~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 47 YTKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888999999997
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=31.17 E-value=25 Score=24.58 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=16.3
Q ss_pred hhhhHhHHHHHHHhhhhhhhc
Q 031145 89 GVIGLGLGISLLSYGFGAYFS 109 (165)
Q Consensus 89 GsLgl~vG~iLtvvGf~AYft 109 (165)
-.+.-.+|..+.++||++|+-
T Consensus 35 ~~iak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 35 LAVAKVTALGISLLGIIGYII 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356667888888999999963
No 6
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=25.65 E-value=26 Score=24.15 Aligned_cols=20 Identities=25% Similarity=0.487 Sum_probs=16.0
Q ss_pred hhhhHhHHHHHHHhhhhhhh
Q 031145 89 GVIGLGLGISLLSYGFGAYF 108 (165)
Q Consensus 89 GsLgl~vG~iLtvvGf~AYf 108 (165)
-.+.-.+|..+.++||++|+
T Consensus 34 ~~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 34 QKIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp HHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666778888899999997
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=24.68 E-value=39 Score=22.68 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=15.7
Q ss_pred hhhhHhHHHHHHHhhhhhhh
Q 031145 89 GVIGLGLGISLLSYGFGAYF 108 (165)
Q Consensus 89 GsLgl~vG~iLtvvGf~AYf 108 (165)
-.+.-.+|..+.++|+++|+
T Consensus 31 ~~iak~~~iG~~i~G~iGf~ 50 (61)
T 3mp7_B 31 KRAAKITGLGIILIGLIGML 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34666778888899999996
No 8
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=16.21 E-value=53 Score=19.73 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=18.6
Q ss_pred CCceeecccchhhhHhHHHHHHHhhhh
Q 031145 79 DEFTLAKVSFGVIGLGLGISLLSYGFG 105 (165)
Q Consensus 79 ~~f~l~k~SlGsLgl~vG~iLtvvGf~ 105 (165)
|+|.-+.=|+..-|++..++|.+.|+.
T Consensus 1 dPF~yDy~tLrigGLi~a~vLfi~gi~ 27 (31)
T 3n2f_G 1 DPFYYDYETVRNGGLIFAALAFIVGLI 27 (31)
T ss_dssp CCCCCCHHHHHHHHTTTHHHHHHHHHH
T ss_pred CCCCCChHHHhhcchhHHHHHHHHHHH
Confidence 345555556667778888888887765
No 9
>1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral protein, photosynthesis; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1
Probab=14.62 E-value=68 Score=21.54 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=10.4
Q ss_pred hhhhHHHHHhhhh
Q 031145 123 YGFPLAVIGMALK 135 (165)
Q Consensus 123 YGiPIlLgGLALK 135 (165)
-|+|++||..|+=
T Consensus 14 vGlPl~LgaVav~ 26 (53)
T 1ijd_A 14 FGLPLMLGAVAIT 26 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 5899999988763
No 10
>1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_A* 2fkw_A*
Probab=14.26 E-value=71 Score=21.46 Aligned_cols=13 Identities=15% Similarity=0.301 Sum_probs=10.4
Q ss_pred hhhhHHHHHhhhh
Q 031145 123 YGFPLAVIGMALK 135 (165)
Q Consensus 123 YGiPIlLgGLALK 135 (165)
-|+|++||..|+=
T Consensus 14 vglPl~LgaVav~ 26 (53)
T 1nkz_A 14 IGIPALLGSVTVI 26 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHH
Confidence 5899999988763
Done!