Query 031145
Match_columns 165
No_of_seqs 68 out of 70
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 15:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031145.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031145hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijda_ f.3.1.1 (A:) Light-har 24.8 14 0.001 22.8 1.4 13 123-135 14-26 (46)
2 d1m56c_ f.25.1.1 (C:) Bacteria 23.8 53 0.0038 24.5 4.9 51 79-134 6-56 (265)
3 d1v54c_ f.25.1.1 (C:) Mitochon 22.3 40 0.0029 25.3 4.0 51 80-135 5-55 (259)
4 d1rh5b_ f.23.28.1 (B:) Preprot 22.0 23 0.0016 22.4 2.0 20 89-108 24-43 (56)
5 d1nkza_ f.3.1.1 (A:) Light-har 21.2 18 0.0013 22.8 1.4 13 122-134 13-25 (53)
6 d2ch4w1 b.40.7.1 (W:9-147) Che 7.0 22 0.0016 23.0 -1.7 24 122-145 14-37 (139)
7 d1v54k_ f.23.5.1 (K:) Mitochon 6.7 97 0.0071 19.0 1.5 28 89-117 9-36 (49)
8 d1q90r_ f.23.12.1 (R:) ISP sub 5.9 1.3E+02 0.0096 17.5 1.7 19 88-108 18-36 (39)
9 d2axtj1 f.23.32.1 (J:7-40) Pho 5.9 1.7E+02 0.013 16.6 2.2 22 86-107 2-24 (34)
10 d1oeda_ f.36.1.1 (A:) Acetylch 5.4 1.1E+02 0.0079 21.2 1.3 46 89-134 31-79 (227)
No 1
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=24.83 E-value=14 Score=22.79 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=10.7
Q ss_pred hhhhHHHHHhhhh
Q 031145 123 YGFPLAVIGMALK 135 (165)
Q Consensus 123 YGiPIlLgGLALK 135 (165)
-|+|++||..|.-
T Consensus 14 vG~Pl~LgsVav~ 26 (46)
T d1ijda_ 14 FGLPLMLGAVAIT 26 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHH
Confidence 6999999988753
No 2
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=23.84 E-value=53 Score=24.51 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=38.4
Q ss_pred CCceeecccchhhhHhHHHHHHHhhhhhhhccCCCCcchhhhhhhhhhHHHHHhhh
Q 031145 79 DEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMAL 134 (165)
Q Consensus 79 ~~f~l~k~SlGsLgl~vG~iLtvvGf~AYft~~p~anLSl~gfFYGiPIlLgGLAL 134 (165)
-+|-+-.-|+-=+...+|+.++.+|++-|++.+ +...++-|+.+++..+..
T Consensus 6 hpyh~~~~SpWPi~~s~~l~~~~~g~~~~~~~~-----~~~~~~~g~~~~l~~l~~ 56 (265)
T d1m56c_ 6 HDYHILPPSIWPFMASVGAFVMLFGAVLWMHGS-----GPWMGLIGLVVVLYTMFG 56 (265)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHHHHHHHHTTS-----CTHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCChhHHHHHHHHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHH
Confidence 456666778999999999999999999998763 234455677777776643
No 3
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.33 E-value=40 Score=25.34 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=38.2
Q ss_pred CceeecccchhhhHhHHHHHHHhhhhhhhccCCCCcchhhhhhhhhhHHHHHhhhh
Q 031145 80 EFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALK 135 (165)
Q Consensus 80 ~f~l~k~SlGsLgl~vG~iLtvvGf~AYft~~p~anLSl~gfFYGiPIlLgGLALK 135 (165)
+|-+-.-|+.=+...+|+..+.+|++.|++.+ +...++-|+.+++.++.+=
T Consensus 5 pyh~v~~SpWP~~~s~~~~~~~~g~~~~~~~~-----~~~~~~~gl~~~~~~~~~W 55 (259)
T d1v54c_ 5 AYHMVNPSPWPLTGALSALLMTSGLTMWFHFN-----SMTLLMIGLTTNMLTMYQW 55 (259)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHS-----CCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCChhHHHHHHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999763 2344555777777766553
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.99 E-value=23 Score=22.36 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=15.7
Q ss_pred hhhhHhHHHHHHHhhhhhhh
Q 031145 89 GVIGLGLGISLLSYGFGAYF 108 (165)
Q Consensus 89 GsLgl~vG~iLtvvGf~AYf 108 (165)
-.+..+.|.-+.++||++|+
T Consensus 24 ~~ia~v~~iG~~i~G~IGf~ 43 (56)
T d1rh5b_ 24 LAVAKVTALGISLLGIIGYI 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35667778888899999986
No 5
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=21.17 E-value=18 Score=22.84 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=10.8
Q ss_pred hhhhhHHHHHhhh
Q 031145 122 TYGFPLAVIGMAL 134 (165)
Q Consensus 122 FYGiPIlLgGLAL 134 (165)
.-|+|++||..|.
T Consensus 13 tVG~Pl~LgsVav 25 (53)
T d1nkza_ 13 AIGIPALLGSVTV 25 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CcCchhHHHHHHH
Confidence 3699999998875
No 6
>d2ch4w1 b.40.7.1 (W:9-147) Chemotaxis protein CheW {Thermotoga maritima [TaxId: 2336]}
Probab=6.97 E-value=22 Score=23.00 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=20.5
Q ss_pred hhhhhHHHHHhhhhccccCCCCCC
Q 031145 122 TYGFPLAVIGMALKYAELKPVPCL 145 (165)
Q Consensus 122 FYGiPIlLgGLALK~AELkPvp~~ 145 (165)
-|+||+..+-=.+++.++.|+|..
T Consensus 14 ~yaip~~~V~ei~~~~~i~~vp~~ 37 (139)
T d2ch4w1 14 ALAFDVDNIEMVIEKSDITPVPKS 37 (139)
T ss_dssp CEEECTTTEEEEEECCCCCCCSSC
T ss_pred EEEEEHHHeEEecCcccceEcCCC
Confidence 588998888888899999999865
No 7
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.66 E-value=97 Score=18.98 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=15.5
Q ss_pred hhhhHhHHHHHHHhhhhhhhccCCCCcch
Q 031145 89 GVIGLGLGISLLSYGFGAYFSIFPGSEWS 117 (165)
Q Consensus 89 GsLgl~vG~iLtvvGf~AYft~~p~anLS 117 (165)
|+.++ +|+..+++...+|.-..-+.+||
T Consensus 9 Gn~vL-~~Ga~fc~avW~yv~TQ~gI~Wn 36 (49)
T d1v54k_ 9 GNAVL-ASGATFCVAVWVYMATQIGIEWN 36 (49)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHSCCCCC
T ss_pred CcEEE-ecccchhhhhhhheeeeeeeeec
Confidence 45544 45555566666776444455454
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.91 E-value=1.3e+02 Score=17.51 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=8.4
Q ss_pred chhhhHhHHHHHHHhhhhhhh
Q 031145 88 FGVIGLGLGISLLSYGFGAYF 108 (165)
Q Consensus 88 lGsLgl~vG~iLtvvGf~AYf 108 (165)
+|++.+.+|+.+ ++++.||
T Consensus 18 ~G~~~~~~~g~l--~py~~fF 36 (39)
T d1q90r_ 18 AGGAGLPITTLA--LGYGAFF 36 (39)
T ss_dssp HHHHHHHHHHHH--HHHHHHH
T ss_pred Hhccchhhhhhc--cceeEEe
Confidence 444444444432 3445554
No 9
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.87 E-value=1.7e+02 Score=16.60 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=12.3
Q ss_pred ccchhhhHhHHH-HHHHhhhhhh
Q 031145 86 VSFGVIGLGLGI-SLLSYGFGAY 107 (165)
Q Consensus 86 ~SlGsLgl~vG~-iLtvvGf~AY 107 (165)
+.+.-+++++|. ++.++|..-|
T Consensus 2 iPLWlv~tv~G~~vi~~vG~FfY 24 (34)
T d2axtj1 2 IPLWIVATVAGMGVIVIVGLFFY 24 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEeeehhhhhhHhheeeeee
Confidence 455667777774 3445554444
No 10
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.36 E-value=1.1e+02 Score=21.24 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=32.9
Q ss_pred hhhhHhHHHHHHHhhhhhhhcc-CCC-C-cchhhhhhhhhhHHHHHhhh
Q 031145 89 GVIGLGLGISLLSYGFGAYFSI-FPG-S-EWSALMLTYGFPLAVIGMAL 134 (165)
Q Consensus 89 GsLgl~vG~iLtvvGf~AYft~-~p~-a-nLSl~gfFYGiPIlLgGLAL 134 (165)
.-+.+++-.+|+..-|.-+.++ .|- + ++.+++.||++=+.+.++++
T Consensus 31 eRi~l~it~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~sl 79 (227)
T d1oeda_ 31 EKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI 79 (227)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred ccEEeeHHHHHHHHHHHHHHHHhCCCcccCcCccchHHHHHHHHHHHHH
Confidence 3466667777777767666644 442 2 47789999999999988875
Done!