BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031146
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H6Q|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
From Schizosaccharomyces Pombe
pdb|1H7Y|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
From Schizosaccharomyces Pombe
Length = 168
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 8/158 (5%)
Query: 7 GDELLSDSFPYKEIENGILWEVEGKWV-VQGAVDVDIGANPSXXXXXXXXXXXXXXXKVV 65
GDEL+SD++ KE+++ I++E + + V V+ DVDIGANPS V
Sbjct: 10 GDELVSDAYDLKEVDD-IVYEADCQMVTVKQGGDVDIGANPSAEDAEENAEEGTET--VN 66
Query: 66 DIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKL 122
++V +FRL +FDKK +++Y+K ++K + +L E ER +F+KN G K +L+
Sbjct: 67 NLVYSFRLSPT-SFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANF 125
Query: 123 SDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADAL 160
D F++GESM D +V Y+E P ++ D L
Sbjct: 126 KDYDFYIGESMDPDAMVVLMNYREDGITPYMIFFKDGL 163
>pdb|1YZ1|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
Length = 174
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 8/164 (4%)
Query: 8 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKV 64
DE+ SD + +EI +G+ EVEGK V + ++D IG N S V
Sbjct: 13 DEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV 72
Query: 65 VDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSK 121
DIV LQE +F K+ + Y+K ++K + KL E+R E K + GA K +L+
Sbjct: 73 -DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILAN 130
Query: 122 LSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 165
+ QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 131 FKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 174
>pdb|2HR9|A Chain A, Solution Structure Of Human Translationally Controlled
Tumor Protein
Length = 180
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 8/164 (4%)
Query: 8 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKV 64
DE+ SD + +EI +G+ EVEGK V + ++D IG N S V
Sbjct: 11 DEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV 70
Query: 65 VDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSK 121
DIV LQE +F K+ + Y+K ++K + KL E+R E K + GA K +L+
Sbjct: 71 -DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILAN 128
Query: 122 LSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 165
+ QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 129 FKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172
>pdb|3EBM|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
Length = 180
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 8 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKV 64
D + SD + +EI +G+ EVEGK V + ++D IG N S V
Sbjct: 11 DVMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV 70
Query: 65 VDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGAT---KFLLSK 121
DIV LQE +F K+ + Y+K ++K + KL E+R E K + GA K +L+
Sbjct: 71 -DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILAN 128
Query: 122 LSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 165
+ QFF+GE+M+ DG + Y+E P ++ D L+ KC
Sbjct: 129 FKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172
>pdb|3P3K|A Chain A, The Crystal Structure Of Translationally Controlled Tumor
Protein (Tctp) Of Plasmodium Falciparum
Length = 183
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 7 GDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXX 61
DE+ SDS+ P++ E I +EV+ ++G D I N
Sbjct: 14 NDEVCSDSYVQQDPFEVPEFREIAFEVKSNKRIKGNEDYGIADNSEDAVEGMGADVE--- 70
Query: 62 XKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFL 118
V+DIVD+F+L AF KK++ Y+K +++ + L E +R EIFK + K +
Sbjct: 71 -HVIDIVDSFQLT-STAFSKKEYSAYIKNYMQKVAKYLEEKKPDRVEIFKTKAQPFIKHI 128
Query: 119 LSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 164
L+ D +F++GES+ + ++++YYK P F+YI+D L E K
Sbjct: 129 LTNFDDFEFYMGESLDMEAGIIYSYYKGEEITPRFVYISDGLFEEK 174
>pdb|1TXJ|A Chain A, Crystal Structure Of Translationally Controlled Tumour-
Associated Protein (Tctp) From Plasmodium Knowlesi
Length = 171
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 7 GDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXX 61
DE+ SDS+ P+ + I +EV+ ++G D I N
Sbjct: 10 NDEVCSDSYNQEDPFGIADFREIAFEVKSNKRIKGNDDYGIADNSEEAVDGMGADVE--- 66
Query: 62 XKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFL 118
+V+DIVD+F+L + KK++ Y+K +++ + L E +R ++FK + K +
Sbjct: 67 -QVIDIVDSFQLT-STSLSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHI 124
Query: 119 LSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 164
L+ D +F++GES+ D L ++YYK P F+YI+D L E K
Sbjct: 125 LTNFDDFEFYMGESLDMDAGLTYSYYKGEEVTPRFVYISDGLYEEK 170
>pdb|2KWB|A Chain A, Minimal Constraint Solution Nmr Structure Of
Translationally Controlled Tumor Protein (Tctp) From
C.Elegans, Northeast S Genomics Consortium Target Wr73
pdb|2LOY|A Chain A, Refined Miminal Constraint Solution Nmr Structure Of
Translationally- Controlled Tumor Protein (Tctp) From
Caenorhabditis Elegans, Northeast Structural Genomics
Consortium Target Wr73
Length = 189
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 8 DELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXXKVVD 66
DEL SDSFP K +++ +++E +GK VV+ ++ + G+NPS + +D
Sbjct: 11 DELSSDSFPMKLVDD-LVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGID 69
Query: 67 IVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKLSEERQ-----EIFKKNIEGATKFLLS 120
IV +L E + D F Y+K+F+K + + + + + FKK I+G LL+
Sbjct: 70 IVLNHKLVEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLA 129
Query: 121 K--LSDLQFFVGESM---HDDGCLVFAYYK--EGATDPTFLYIADALKEVKC 165
K +L FF+GE ++G + Y+ +G PT + + +A+ E KC
Sbjct: 130 KDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEKC 181
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 28 VEGKWVVQGAVDVDIGANP 46
V+G+W+ +GA VD+G P
Sbjct: 224 VKGEWIKEGAAVVDVGTTP 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,470,992
Number of Sequences: 62578
Number of extensions: 150789
Number of successful extensions: 343
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 12
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)