Query 031146
Match_columns 165
No_of_seqs 108 out of 351
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 15:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6q_A TCTP, P23FYP, translati 100.0 1.8E-76 6E-81 471.9 14.2 157 5-165 8-168 (168)
2 1yz1_A Translationally control 100.0 2.2E-76 7.5E-81 473.8 7.3 159 5-165 10-174 (174)
3 1txj_A Translationally control 100.0 3.7E-74 1.3E-78 459.6 9.1 155 5-165 8-171 (171)
4 2kwb_A TCTP, translationally-c 100.0 1.6E-72 5.6E-77 455.9 6.3 159 5-165 8-181 (189)
5 4fqn_A Malcavernin; helical do 66.6 6.6 0.00023 28.3 3.9 27 85-111 15-41 (98)
6 2l7y_A Putative endo-beta-N-ac 48.3 12 0.00042 26.7 2.7 23 126-148 18-40 (98)
7 1v0d_A DNA fragmentation facto 37.6 46 0.0016 28.6 5.1 24 75-99 149-178 (329)
8 3dml_A Putative uncharacterize 31.7 17 0.00058 26.1 1.3 14 149-162 76-89 (116)
9 2krx_A ASL3597 protein; struct 31.7 63 0.0022 22.9 4.2 51 78-130 23-74 (94)
10 3evy_A Putative type I restric 30.4 52 0.0018 26.4 4.2 45 83-127 12-71 (239)
11 1g1e_B SIN3A; four-helix bundl 27.2 50 0.0017 22.7 3.0 31 86-116 11-43 (89)
12 2cr7_A Paired amphipathic heli 25.8 45 0.0015 22.5 2.5 25 89-113 14-40 (80)
13 2xrh_A Protein HP0721; unknown 25.7 61 0.0021 23.3 3.3 48 70-117 39-86 (100)
14 3evi_A Phosducin-like protein 25.4 35 0.0012 23.9 2.0 43 115-163 45-87 (118)
15 2czy_A Paired amphipathic heli 24.9 48 0.0016 22.1 2.5 27 87-113 6-34 (77)
16 1e91_A Paired amphipathic heli 23.3 61 0.0021 22.0 2.9 28 87-114 9-38 (85)
17 4euy_A Uncharacterized protein 22.9 89 0.0031 20.0 3.6 13 149-161 71-83 (105)
18 2qsi_A Putative hydrogenase ex 20.6 36 0.0012 25.2 1.3 15 149-163 89-103 (137)
19 2h1e_A Chromo domain protein 1 20.2 28 0.00094 26.9 0.6 13 63-75 13-25 (177)
No 1
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Probab=100.00 E-value=1.8e-76 Score=471.87 Aligned_cols=157 Identities=38% Similarity=0.674 Sum_probs=153.1
Q ss_pred ccCCeeeccCCCceEeeCCEEEEEEEEEEEe-ccccccCCCCCCCCCCCCCCCcccceEEeeeeeeccccccCCCCCHHH
Q 031146 5 CLGDELLSDSFPYKEIENGILWEVEGKWVVQ-GAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQ 83 (165)
Q Consensus 5 itgDEm~SD~y~~~~v~~~~~yeV~gk~v~~-~~~d~~iG~N~saE~~e~~e~~~~~~~~vvDiV~~~~Lqe~t~f~Kk~ 83 (165)
||||||||||||++++ +|++|||+||+|+| +++|++||||||||++ ++++++++++|||||+|||||| |+||||+
T Consensus 8 itgDEm~SDsy~~k~v-d~~~yEV~gk~v~~~~~~didiGaN~SaE~~--~eg~d~~~~~vvdiV~~~rLqe-t~fdKk~ 83 (168)
T 1h6q_A 8 ISGDELVSDAYDLKEV-DDIVYEADCQMVTVKQGGDVDIGANPSAEDA--EENAEEGTETVNNLVYSFRLSP-TSFDKKS 83 (168)
T ss_dssp TTTSSCEETTTCEEEC-SSSEEEEECCEEEEECCCCSTTSCCCCCCSC--SCSSCCCEEEEEHHHHHTTCEE-CCCCHHH
T ss_pred CCCCEEeecCcccEee-CCEEEEEeeEEEEEccCCccccccCcccccc--ccccCCceEEeeeeeEeccccc-CCcCHHH
Confidence 8999999999999999 67999999999999 9999999999999985 5889999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhccCC---ChHHHHHHHHhHHHHHHHHHhcCCCcceeeccCCCCCceEEEEeccCCCcceEEEEEcccc
Q 031146 84 FVTYMKRFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADAL 160 (165)
Q Consensus 84 y~~yiK~Y~K~ik~kL---~~erv~~F~~~a~~~vK~il~nfkd~qFy~Gesmd~dgmv~l~~y~edg~tP~~~f~KdGL 160 (165)
|++|||+|||+|++|| +||||++|+++||++||+||+||+|||||+||||||||||||++|||||+||||+||||||
T Consensus 84 y~~yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GEsmd~dgmvvl~~Yredg~tP~~~f~K~GL 163 (168)
T 1h6q_A 84 YMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFFKDGL 163 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTTTTCCEECTTCCTTSCCEEEEECSSSSCEEEEEESTTC
T ss_pred HHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCceEEEEEecCCCCCeEEEEEcccc
Confidence 9999999999999999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecC
Q 031146 161 KEVKC 165 (165)
Q Consensus 161 ~eeK~ 165 (165)
+||||
T Consensus 164 ~eeK~ 168 (168)
T 1h6q_A 164 VSEKF 168 (168)
T ss_dssp EEECC
T ss_pred eeecC
Confidence 99998
No 2
>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A {Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
Probab=100.00 E-value=2.2e-76 Score=473.82 Aligned_cols=159 Identities=36% Similarity=0.639 Sum_probs=132.2
Q ss_pred ccCCeeeccCCCceEeeCCEEEEEEEEEEEecccccc---CCCCCCCCCCCCCCCcccceEEeeeeeeccccccCCCCCH
Q 031146 5 CLGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAFDK 81 (165)
Q Consensus 5 itgDEm~SD~y~~~~v~~~~~yeV~gk~v~~~~~d~~---iG~N~saE~~e~~e~~~~~~~~vvDiV~~~~Lqe~t~f~K 81 (165)
||||||||||||++++.+|++|||+||+|+|++++++ ||||||||+++ ++++++++++|||||+|||||| |+|||
T Consensus 10 itgDEm~SDsy~~~~~~dg~~yEV~gk~v~~~~g~idd~liGaN~SaE~~~-~eg~d~~~~~~vdiV~~~rLqe-t~fdK 87 (174)
T 1yz1_A 10 ISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPE-GEGTESTVITGVDIVMNHHLQE-TSFTK 87 (174)
T ss_dssp TTCCEEEETTSEEEEEGGGTEEEEECCBCCC-----------------------------CCCBHHHHHTTCEE-ECCCH
T ss_pred CCCCEEeecCcccEEccCCEEEEEeeEEEEecCCCccccccccCccccccc-ccccCcceEEcceeEeeccccc-cCcCH
Confidence 7999999999999999888999999999999999886 99999999864 6889999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHhccCC---ChHHHHHHHHhHHHHHHHHHhcCCCcceeeccCCCCCceEEEEeccCCCcceEEEEEcc
Q 031146 82 KQFVTYMKRFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIAD 158 (165)
Q Consensus 82 k~y~~yiK~Y~K~ik~kL---~~erv~~F~~~a~~~vK~il~nfkd~qFy~Gesmd~dgmv~l~~y~edg~tP~~~f~Kd 158 (165)
|+|++|||+|||+|++|| +||||++|+++||++||+||+||||||||+||||||||||||++|||||+||||+||||
T Consensus 88 k~y~~yiK~YmK~v~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GESmd~dgmvvl~~Yredg~tP~~~f~K~ 167 (174)
T 1yz1_A 88 EAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKD 167 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEEEECTTCCTTSCEEEEEECTTSSCEEEEEEGG
T ss_pred HHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCccEEEEEccCCCcCeEEEEEcc
Confidence 999999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecC
Q 031146 159 ALKEVKC 165 (165)
Q Consensus 159 GL~eeK~ 165 (165)
||+||||
T Consensus 168 GL~eeK~ 174 (174)
T 1yz1_A 168 GLEMEKC 174 (174)
T ss_dssp GEEEEEC
T ss_pred cceeecC
Confidence 9999998
No 3
>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2 PDB: 3p3k_A
Probab=100.00 E-value=3.7e-74 Score=459.61 Aligned_cols=155 Identities=32% Similarity=0.623 Sum_probs=136.6
Q ss_pred ccCCeeeccCC----Cce--EeeCCEEEEEEEEEEEeccccccCCCCCCCCCCCCCCCcccceEEeeeeeeccccccCCC
Q 031146 5 CLGDELLSDSF----PYK--EIENGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPA 78 (165)
Q Consensus 5 itgDEm~SD~y----~~~--~v~~~~~yeV~gk~v~~~~~d~~iG~N~saE~~e~~e~~~~~~~~vvDiV~~~~Lqe~t~ 78 (165)
||||||||||| |++ ++ +|++|||+||+|+|+++|++||||||||++ +++++ +++|||||+|||||| |+
T Consensus 8 itgDEm~SDsy~~~~~~k~~e~-~~~~yEV~gk~v~~~~~~idiGaN~saE~~--~e~~d--~~~vvdIV~~~rL~e-t~ 81 (171)
T 1txj_A 8 FTNDEVCSDSYNQEDPFGIADF-REIAFEVKSNKRIKGNDDYGIADNSEEAVD--GMGAD--VEQVIDIVDSFQLTS-TS 81 (171)
T ss_dssp TTCCEEEETTSCCBCGGGCGGG-TTTEEEEECCEEESCC----------------CCCCS--SCEEEHHHHHHTCEE-EC
T ss_pred CcCCEEEeccccccCCcccccc-CCEEEEEEeEEEEECCCcccccCCcccccc--ccCcc--eeecceEEEecceee-cC
Confidence 79999999999 999 88 569999999999999999999999999985 47776 899999999999999 99
Q ss_pred CCHHHHHHHHHHHHHHhccCC---ChHHHHHHHHhHHHHHHHHHhcCCCcceeeccCCCCCceEEEEeccCCCcceEEEE
Q 031146 79 FDKKQFVTYMKRFIKLLTPKL---SEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLY 155 (165)
Q Consensus 79 f~Kk~y~~yiK~Y~K~ik~kL---~~erv~~F~~~a~~~vK~il~nfkd~qFy~Gesmd~dgmv~l~~y~edg~tP~~~f 155 (165)
||||+|++|||+|||+|++|| +||||++|+++||++||+||+||+|||||+||||||||||||++|||||+||||+|
T Consensus 82 f~Kk~y~~yiK~YmK~i~~kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GESmd~dgmvvl~~Yredg~tP~~~f 161 (171)
T 1txj_A 82 LSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDDFEFYMGESLDMDAGLTYSYYKGEEVTPRFVY 161 (171)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEEEECTTCCTTSCCEEEECCTTCSSCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhhCcCccEeccCCCCCCceEEEEEecCCCCCeEEEE
Confidence 999999999999999999999 68999999999999999999999999999999999999999999999999999999
Q ss_pred EccccceecC
Q 031146 156 IADALKEVKC 165 (165)
Q Consensus 156 ~KdGL~eeK~ 165 (165)
|||||+||||
T Consensus 162 ~K~GL~eeK~ 171 (171)
T 1txj_A 162 ISDGLYEEKF 171 (171)
T ss_dssp EGGGEEEEEC
T ss_pred EcccceeecC
Confidence 9999999998
No 4
>2kwb_A TCTP, translationally-controlled tumor protein homolog; structural genomics, northeast structural genomics consortiu PSI-2; NMR {Caenorhabditis elegans} PDB: 2loy_A
Probab=100.00 E-value=1.6e-72 Score=455.94 Aligned_cols=159 Identities=35% Similarity=0.633 Sum_probs=152.9
Q ss_pred ccCCeeeccCCCceEeeCCEEEEEEEEEEEecccccc-CCCCCCCCCCCCCCCcccceEEeeeeeeccccccCCCC--CH
Q 031146 5 CLGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD-IGANPSAEGADEDEGVDDQAVKVVDIVDTFRLQEQPAF--DK 81 (165)
Q Consensus 5 itgDEm~SD~y~~~~v~~~~~yeV~gk~v~~~~~d~~-iG~N~saE~~e~~e~~~~~~~~vvDiV~~~~Lqe~t~f--~K 81 (165)
||||||||||||++++ +|++|||+||+|+|++++++ ||||||||++++++++++++++|||||+|||||| |+| ||
T Consensus 8 itgDEmfSDsy~~k~v-d~~~yEV~gK~v~~~~gdidl~GaN~SaE~~~~~eg~d~~~~~vvDIV~n~rLqe-t~f~~dK 85 (189)
T 2kwb_A 8 FTDDELSSDSFPMKLV-DDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVE-MNCYEDA 85 (189)
T ss_dssp SCTTTCEEECCCCEEE-TTTEEEEECCEECCBTTBCCCCCCSCCCSSCCSSCCCGGGCSSEEHHHHTTTEEE-ECHHHHH
T ss_pred CCCCEEeecCccCEee-CCEEEEEeeEEEEECCccccccccCccccccccccccCCccEEcceeEEecceee-cccccCH
Confidence 7999999999999999 57999999999999999998 8999999985457899999999999999999999 999 99
Q ss_pred HHHHHHHHHHHHHhccCC---ChHH--HHHHHHhHHHHHHHHHh--cCCCcceeeccCCCC---CceEEEEeccC-CC-c
Q 031146 82 KQFVTYMKRFIKLLTPKL---SEER--QEIFKKNIEGATKFLLS--KLSDLQFFVGESMHD---DGCLVFAYYKE-GA-T 149 (165)
Q Consensus 82 k~y~~yiK~Y~K~ik~kL---~~er--v~~F~~~a~~~vK~il~--nfkd~qFy~Gesmd~---dgmv~l~~y~e-dg-~ 149 (165)
|+|++|||+|||+|++|| +|+| |++|+++||++||+||+ ||||||||+|||||| ||||||++||| || +
T Consensus 86 k~y~~yiK~YmK~v~~kLee~~pe~e~v~~Fk~~a~~~vK~iL~k~~Fkd~qFf~GESmd~~~~dGmv~l~~Yre~dg~~ 165 (189)
T 2kwb_A 86 SMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTE 165 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCHHHHTTCEEEEEHHHHHHTSCCCEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHhccccccCccEeccCCCCCCCCCceEEEEEEEcCCCCc
Confidence 999999999999999999 5777 99999999999999999 999999999999999 99999999999 99 9
Q ss_pred ceEEEEEccccceecC
Q 031146 150 DPTFLYIADALKEVKC 165 (165)
Q Consensus 150 tP~~~f~KdGL~eeK~ 165 (165)
||||+||||||+||||
T Consensus 166 tP~~~ffK~GL~eeK~ 181 (189)
T 2kwb_A 166 VPTLMLVKEAIIEEKC 181 (189)
T ss_dssp EEEEEEETTTEEEECC
T ss_pred CeEEEEEccCceEEEe
Confidence 9999999999999998
No 5
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=66.62 E-value=6.6 Score=28.27 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhccCCChHHHHHHHHhH
Q 031146 85 VTYMKRFIKLLTPKLSEERQEIFKKNI 111 (165)
Q Consensus 85 ~~yiK~Y~K~ik~kL~~erv~~F~~~a 111 (165)
..-+++||..++.+|+|+++..|-.=.
T Consensus 15 ~e~lqdYM~~L~~~L~~~ElqqFA~Ll 41 (98)
T 4fqn_A 15 TELLQDYMLTLRTKLSSQEIQQFAALL 41 (98)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHH
Confidence 456999999999999999999886543
No 6
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=48.34 E-value=12 Score=26.72 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.6
Q ss_pred ceeeccCCCCCceEEEEeccCCC
Q 031146 126 QFFVGESMHDDGCLVFAYYKEGA 148 (165)
Q Consensus 126 qFy~Gesmd~dgmv~l~~y~edg 148 (165)
++++||++|..|+++...|.++.
T Consensus 18 ~Y~vGE~LDltGl~v~~~YsDgt 40 (98)
T 2l7y_A 18 DYLVGDSLDLSEGRFAVAYSNDT 40 (98)
T ss_dssp EEETTTCCCCCSCEEEEEETTSC
T ss_pred EEecCCccccCCCEEEEEEcCCC
Confidence 37889999999999999997543
No 7
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Probab=37.65 E-value=46 Score=28.59 Aligned_cols=24 Identities=17% Similarity=0.578 Sum_probs=21.5
Q ss_pred cCCCC-CHHHHHHH-----HHHHHHHhccCC
Q 031146 75 EQPAF-DKKQFVTY-----MKRFIKLLTPKL 99 (165)
Q Consensus 75 e~t~f-~Kk~y~~y-----iK~Y~K~ik~kL 99 (165)
| +.| ||.+|+.| |.+|++++++.|
T Consensus 149 e-~~f~tKe~yM~~~~q~RIRgY~~k~~~~~ 178 (329)
T 1v0d_A 149 E-SRFRNKSGYLRYSCESRIRGYLREVSAYT 178 (329)
T ss_dssp C-TTCCBHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred c-cccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 677 89999987 999999999999
No 8
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=31.73 E-value=17 Score=26.14 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.6
Q ss_pred cceEEEEEccccce
Q 031146 149 TDPTFLYIADALKE 162 (165)
Q Consensus 149 ~tP~~~f~KdGL~e 162 (165)
-||+++||++|=+.
T Consensus 76 g~PT~i~f~~G~ev 89 (116)
T 3dml_A 76 FTPTFVLMAGDVES 89 (116)
T ss_dssp SSSEEEEEETTEEE
T ss_pred CCCEEEEEECCEEE
Confidence 48999999999543
No 9
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=31.69 E-value=63 Score=22.92 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHHhc-cCCChHHHHHHHHhHHHHHHHHHhcCCCcceeec
Q 031146 78 AFDKKQFVTYMKRFIKLLT-PKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVG 130 (165)
Q Consensus 78 ~f~Kk~y~~yiK~Y~K~ik-~kL~~erv~~F~~~a~~~vK~il~nfkd~qFy~G 130 (165)
-.|+.+.+.++|.++.... .-| |..++.| ....+++++++.++=++++--|
T Consensus 23 fLT~~Ell~~Lk~~L~~~~~~~L-P~dL~~~-~s~~~qaq~Lldt~CELei~pG 74 (94)
T 2krx_A 23 FLTTIELLEKLKGELEKISFSDL-PLELQKL-DSLPAQAQHLIDTSCELDVGAG 74 (94)
T ss_dssp EECHHHHHHHHHHHHHHSCTTTS-CHHHHHC-CCHHHHHHHHHHHCCCEEEETT
T ss_pred cCCHHHHHHHHHHHHHhCccccC-CHHHHhC-CCHHHHHHHHHHheeeeeeCCC
Confidence 3499999999999999987 444 4556666 5566888999999999887433
No 10
>3evy_A Putative type I restriction enzyme R protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Bacteroides fragilis nctc 9343}
Probab=30.41 E-value=52 Score=26.42 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcc---CC-Ch---------HHHHHHHHhHHHHHH--HHHhcCCCcce
Q 031146 83 QFVTYMKRFIKLLTP---KL-SE---------ERQEIFKKNIEGATK--FLLSKLSDLQF 127 (165)
Q Consensus 83 ~y~~yiK~Y~K~ik~---kL-~~---------erv~~F~~~a~~~vK--~il~nfkd~qF 127 (165)
+|..|+++|-+++.+ .. .| +..+.|.+..+++.+ .+|..|++|..
T Consensus 12 ~y~e~~~~f~~av~~L~~~~p~p~~i~~l~~e~~k~~Fvk~F~e~~r~~~~L~~Ydef~~ 71 (239)
T 3evy_A 12 PYEKLVERFNEMAAEFLSYFPTVKSVGNLESELDKRRFVILFRAMLRLRNEVKGYNEFDA 71 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHTTSTTCCG
T ss_pred CHHHHHHHHHHHHHHHHHhCCChhhcccCCCHHHHHHHHHHHHHHHHHHHHHhcccccCh
Confidence 677888888666543 21 23 344579999988887 58889999755
No 11
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=27.16 E-value=50 Score=22.69 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=24.1
Q ss_pred HHHHHHHHHhccCC--ChHHHHHHHHhHHHHHH
Q 031146 86 TYMKRFIKLLTPKL--SEERQEIFKKNIEGATK 116 (165)
Q Consensus 86 ~yiK~Y~K~ik~kL--~~erv~~F~~~a~~~vK 116 (165)
..-..|+++||.+. +|+..+.|..-+..+-+
T Consensus 11 ~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 11 NHAINYVNKIKNRFQGQPDIYKAFLEILHTYQK 43 (89)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHh
Confidence 45678999999998 78888888776666644
No 12
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=25.79 E-value=45 Score=22.46 Aligned_cols=25 Identities=4% Similarity=0.125 Sum_probs=16.2
Q ss_pred HHHHHHhccCC--ChHHHHHHHHhHHH
Q 031146 89 KRFIKLLTPKL--SEERQEIFKKNIEG 113 (165)
Q Consensus 89 K~Y~K~ik~kL--~~erv~~F~~~a~~ 113 (165)
..|+++||.++ +|+..+.|..-+..
T Consensus 14 ~~yl~~VK~rF~~~p~~Y~~FL~im~~ 40 (80)
T 2cr7_A 14 LTYLDQVKIRFGSDPATYNGFLEIMKE 40 (80)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 35777777777 57776766654443
No 13
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=25.74 E-value=61 Score=23.25 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=32.6
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHHhccCCChHHHHHHHHhHHHHHHH
Q 031146 70 TFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKF 117 (165)
Q Consensus 70 ~~~Lqe~t~f~Kk~y~~yiK~Y~K~ik~kL~~erv~~F~~~a~~~vK~ 117 (165)
.-||+.++.=.++.|..-++.++.+-.++|+.++-..-.+.+.+.+++
T Consensus 39 ~KR~~~M~~k~~k~F~~~~~~~~~kN~~kMS~ke~~~~r~aI~eal~k 86 (100)
T 2xrh_A 39 KKRMEKMPEDKRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALKK 86 (100)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 457776433357888888888888888888766655555555555543
No 14
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=25.37 E-value=35 Score=23.93 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=24.8
Q ss_pred HHHHHhcCCCcceeeccCCCCCceEEEEeccCCCcceEEEEEcccccee
Q 031146 115 TKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEV 163 (165)
Q Consensus 115 vK~il~nfkd~qFy~Gesmd~dgmv~l~~y~edg~tP~~~f~KdGL~ee 163 (165)
+..+...+.+..|+. .|.|-. + -.| .--..|++++||+|-...
T Consensus 45 l~~la~~~~~v~f~k---vd~d~~-~-~~~-~v~~~PT~~~fk~G~~v~ 87 (118)
T 3evi_A 45 LSLLARKFPETKFVK---AIVNSC-I-QHY-HDNCLPTIFVYKNGQIEA 87 (118)
T ss_dssp HHHHHHHCTTSEEEE---EEGGGT-S-TTC-CGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHCCCCEEEE---EEhHHh-H-HHC-CCCCCCEEEEEECCEEEE
Confidence 344445567777764 333332 1 222 234689999999996543
No 15
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=24.94 E-value=48 Score=22.11 Aligned_cols=27 Identities=4% Similarity=0.073 Sum_probs=19.4
Q ss_pred HHHHHHHHhccCC--ChHHHHHHHHhHHH
Q 031146 87 YMKRFIKLLTPKL--SEERQEIFKKNIEG 113 (165)
Q Consensus 87 yiK~Y~K~ik~kL--~~erv~~F~~~a~~ 113 (165)
.-..|+++||.++ +|+....|..-+..
T Consensus 6 dA~~yl~~VK~~F~~~p~~Y~~FL~im~~ 34 (77)
T 2czy_A 6 DALTYLDQVKIRFGSDPATYNGFLEIMKE 34 (77)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 3457889999998 57777777665443
No 16
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=23.35 E-value=61 Score=22.01 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=21.4
Q ss_pred HHHHHHHHhccCC--ChHHHHHHHHhHHHH
Q 031146 87 YMKRFIKLLTPKL--SEERQEIFKKNIEGA 114 (165)
Q Consensus 87 yiK~Y~K~ik~kL--~~erv~~F~~~a~~~ 114 (165)
.-..|+++||.++ +|+..+.|..-+..+
T Consensus 9 ~A~~yv~kVK~rF~~~p~~Y~~FL~il~~y 38 (85)
T 1e91_A 9 NAISYVNKIKTRFLDHPEIYRSFLEILHTY 38 (85)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4568999999999 688888887655544
No 17
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=22.92 E-value=89 Score=20.03 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=10.6
Q ss_pred cceEEEEEccccc
Q 031146 149 TDPTFLYIADALK 161 (165)
Q Consensus 149 ~tP~~~f~KdGL~ 161 (165)
.+|++++|++|-.
T Consensus 71 ~~Pt~~~~~~G~~ 83 (105)
T 4euy_A 71 TGPTVLLFYNGKE 83 (105)
T ss_dssp CCCEEEEEETTEE
T ss_pred CCCEEEEEeCCeE
Confidence 5899999998844
No 18
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.63 E-value=36 Score=25.23 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=12.3
Q ss_pred cceEEEEEcccccee
Q 031146 149 TDPTFLYIADALKEV 163 (165)
Q Consensus 149 ~tP~~~f~KdGL~ee 163 (165)
-.|+++|||+|-.-.
T Consensus 89 siPTlilFkdG~~v~ 103 (137)
T 2qsi_A 89 VCPSLAVVQPERTLG 103 (137)
T ss_dssp SSSEEEEEECCEEEE
T ss_pred cCCEEEEEECCEEEE
Confidence 489999999996543
No 19
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=20.24 E-value=28 Score=26.93 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=11.4
Q ss_pred Eeeeeeecccccc
Q 031146 63 KVVDIVDTFRLQE 75 (165)
Q Consensus 63 ~vvDiV~~~~Lqe 75 (165)
-+||+|++|||.|
T Consensus 13 ~~id~v~~hr~~~ 25 (177)
T 2h1e_A 13 HGIDIVINHRLKT 25 (177)
T ss_dssp CCEEEEEEEEECT
T ss_pred CcceeeecCCccc
Confidence 4699999999986
Done!