BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031148
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FG71|EMC89_ARATH ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis
thaliana GN=EMB2731 PE=2 SV=1
Length = 208
Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/138 (79%), Positives = 126/138 (91%)
Query: 2 GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP 61
GELKYE+SQNAYIKLVLH+ +HKTAAVNGVL+GR+SP++D VVEI+DSVPLFHS+L LLP
Sbjct: 7 GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLP 66
Query: 62 NLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDN 121
LEISLIMIEEHY AQGL IVGYFHANERFDD+EL +AKNIG+HI RYFPQ +LLL+N
Sbjct: 67 PLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNN 126
Query: 122 KKLEALPKGKDRSPVMQV 139
KKLEAL KGK+RSPVMQ+
Sbjct: 127 KKLEALSKGKERSPVMQL 144
>sp|Q5U1W7|EMC9_RAT ER membrane protein complex subunit 9 OS=Rattus norvegicus GN=Emc9
PE=2 SV=1
Length = 206
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
MGE+ E+S AY K+ LHA ++ AAVNG+LL + + + + D VPLFHSHL L
Sbjct: 1 MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATRSGECLC-LTDCVPLFHSHLALS 57
Query: 61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLD 120
LE++L ++ + GL + GY+HAN DD +A I I +FP +++LD
Sbjct: 58 VMLEVALNQVDVWATQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPNAVLIMLD 117
Query: 121 NKKLEALPK 129
NKKL P+
Sbjct: 118 NKKLVTWPR 126
>sp|Q9DB76|EMC9_MOUSE ER membrane protein complex subunit 9 OS=Mus musculus GN=Emc9 PE=2
SV=1
Length = 206
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
MGE+ E+S AY K+ LHA ++ AAVNG+LL + + + + D VPLFHSHL L
Sbjct: 1 MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATGSGECLC-LTDCVPLFHSHLALS 57
Query: 61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLD 120
LE++L ++ + GL + GY+HAN DD +A I I +FP+ +++LD
Sbjct: 58 VMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPRAVLIMLD 117
Query: 121 NKKLEALPK 129
NKKL P+
Sbjct: 118 NKKLVTRPR 126
>sp|Q9Y3B6|EMC9_HUMAN ER membrane protein complex subunit 9 OS=Homo sapiens GN=EMC9 PE=1
SV=3
Length = 208
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MGELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLL 60
MGE+ E+S AY+K+ LHA ++ AAVNG+ L +P++ + + D VPLFHSHL L
Sbjct: 1 MGEV--EISALAYVKMCLHAARYPHAAVNGLFLAP-APRSGECLCLTDCVPLFHSHLALS 57
Query: 61 PNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLD 120
LE++L ++ + GL + GY+HAN +D +A I I +FP +++LD
Sbjct: 58 VMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPDAVLIMLD 117
Query: 121 NKKLEALPK 129
N+KL P+
Sbjct: 118 NQKLVPQPR 126
>sp|Q9W1Y1|EMC89_DROME ER membrane protein complex subunit 8/9 homolog OS=Drosophila
melanogaster GN=CG3501 PE=1 SV=1
Length = 203
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEI 65
Y++S+ AY KL+ HA K+ AVNG+LL + + + VEI D++PLFH L + P E+
Sbjct: 4 YKVSERAYAKLIFHAAKYPHQAVNGLLLAEKTSKG-SQVEIVDAIPLFHQCLYVTPMAEV 62
Query: 66 SLIMIEEHYSAQGLGIVGYFHANERFDDLELDSI-AKNIGNHICRYFPQCAVLLLDNK 122
+L++I+ H +GL I GY+ A E F D ++D A I + I F +++DNK
Sbjct: 63 ALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFVVVDNK 120
>sp|O70378|EMC8_MOUSE ER membrane protein complex subunit 8 OS=Mus musculus GN=Emc8 PE=1
SV=1
Length = 207
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQND------AVVEIADSVPLFHSHLGL 59
+L+ AY K+VLH K+ AVNG+L+ R P+ + + D +PLFH L L
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGSHTLFVDCIPLFHGTLAL 64
Query: 60 LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLL 119
P LE++L +I+ I GY+ ANER D + +A+ + + I F A++++
Sbjct: 65 TPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFGDAALIMV 124
Query: 120 DNKKL 124
DN K
Sbjct: 125 DNAKF 129
>sp|Q5FVL2|EMC8_RAT ER membrane protein complex subunit 8 OS=Rattus norvegicus GN=Emc8
PE=2 SV=1
Length = 207
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV------VEIADSVPLFHSHLGL 59
+L+ AY K+VLH K+ AVNG+L+ R P+ + D +PLFH L L
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGNHTLFVDCIPLFHGTLAL 64
Query: 60 LPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLL 119
P LE++L +I+ I GY+ ANER D + +A+ + + I F A++++
Sbjct: 65 TPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDAALIMV 124
Query: 120 DNKKL 124
DN K
Sbjct: 125 DNAKF 129
>sp|O43402|EMC8_HUMAN ER membrane protein complex subunit 8 OS=Homo sapiens GN=EMC8 PE=1
SV=1
Length = 210
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSH 56
+L+ AY K+VLH K+ AVNG+L+ + P+ + + D +PLFH
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGT 64
Query: 57 LGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAV 116
L L P LE++L +I+ I GY+ ANER D + +A+ + + I F A+
Sbjct: 65 LALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTAL 124
Query: 117 LLLDNKKL 124
+++DN K
Sbjct: 125 IMVDNTKF 132
>sp|Q32KL5|EMC8_BOVIN ER membrane protein complex subunit 8 OS=Bos taurus GN=EMC8 PE=2
SV=1
Length = 210
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSH 56
+L+ AY K+VLH K+ AV+G+L+ + P+ + + D +PLFH
Sbjct: 5 KLTTQAYCKMVLHGAKYPHCAVDGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGT 64
Query: 57 LGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAV 116
L L P LE++L +I+ I GY+ ANER D + +A+ + + I F A+
Sbjct: 65 LALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTAL 124
Query: 117 LLLDNKKL 124
+++DN K
Sbjct: 125 IMVDNTKF 132
>sp|Q55FM0|EMC89_DICDI ER membrane protein complex subunit 8/9 homolog OS=Dictyostelium
discoideum GN=DDB_G0268048 PE=3 SV=1
Length = 192
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 8 LSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISL 67
++ A K LH+ KH ++VNG+LLG+ + + I D +PLFH+ LLP E+++
Sbjct: 7 ITTEALSKAHLHSFKHHASSVNGILLGKADKNS---ILITDIIPLFHTQ-TLLPMFEVAM 62
Query: 68 IMIEEHYSAQGLGIVGYFHANERF-DDLELDSIAKNIGNHICRYFPQCAVLLL 119
I IE++ + +VGY+H+N+ ++LE + IAK I + + L++
Sbjct: 63 IQIEKYCRDNNIDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMI 115
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 37.0 bits (84), Expect = 0.060, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
+ ++S A + + LH+ A V G+L GR S + D VVE+ + P GL +
Sbjct: 577 FQVKVSSEALLIMDLHSHV-SMAEVIGLLGGRYS-EADKVVEVCAAEPCNSLSTGLQCEM 634
Query: 64 E-ISLIMIEEHYSAQGLGIVGYFHANERFD 92
+ +S E +A+G ++G++H++ FD
Sbjct: 635 DPVSQTQASETLAARGYSVIGWYHSHPAFD 664
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
+ ++S A + L LHA A V G+L GR + ++++VVEI P GL +
Sbjct: 546 FQVKVSCEAMLVLDLHAHV-SMAEVIGLLGGRYT-ESESVVEICAVEPCNSLSTGLQCEM 603
Query: 64 E-ISLIMIEEHYSAQGLGIVGYFHANERFDD----LELDSIAKNIGNHICRYFPQCAVLL 118
+ +S E +++G ++G++H++ FD ++D+ AK YF +
Sbjct: 604 DPVSQTQASEALASRGYSVIGWYHSHPAFDPNPSIRDIDTQAK-----YQNYFSRGGAKF 658
Query: 119 LDNKKLEALPKGKDRSPVMQVSAVFVCIELSNYG 152
L + + ++ P QV+ + + ELSN G
Sbjct: 659 LG--MIISPYNRRNPHPQSQVACLIISDELSNDG 690
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
+ +++ A + + LHA A V G+L GR S + D VVE+ + P GL +
Sbjct: 575 FQVKVASEALLIMDLHAHV-SMAEVIGLLGGRYS-EVDKVVEVCAAEPCNSLSTGLQCEM 632
Query: 64 E-ISLIMIEEHYSAQGLGIVGYFHANERFD 92
+ +S E + +G ++G++H++ FD
Sbjct: 633 DPVSQTQASETLAVRGFSVIGWYHSHPAFD 662
>sp|Q8IZE3|PACE1_HUMAN Protein-associating with the carboxyl-terminal domain of ezrin
OS=Homo sapiens GN=SCYL3 PE=1 SV=3
Length = 742
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 112 PQCAVLLLDNKKLEALPKGKDRSPVMQVSAVFVCIELS 149
P A L+L + E +PK D SPVMQ S+ F E++
Sbjct: 685 PSAAFLILPELRTEMVPKKDDVSPVMQFSSKFAAAEIT 722
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 4 LKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNL 63
+ +++ A + + LHA A V G+L GR S + D V+E+ + P GL +
Sbjct: 566 FQVKVAAEALLIMNLHAHV-SMAEVIGLLGGRYS-EADKVLEVCAAEPCNSLSTGLQCEM 623
Query: 64 E-ISLIMIEEHYSAQGLGIVGYFHANERFD 92
+ +S E + +G ++G++H++ FD
Sbjct: 624 DPVSQTQASETLALRGYSVIGWYHSHPAFD 653
>sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=comA PE=1 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 16 LVLHARKH--KTAAVNGVLL----GRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIM 69
+ L RK+ K A NG ++ G+ P D + I D + L + L + ++
Sbjct: 111 ISLEERKNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDL----DAGADYVI 166
Query: 70 IEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIG-NHICRYFPQ 113
IE S +G+G+ F + + ELD +AKN+ N + PQ
Sbjct: 167 IEGRESGKGIGL---FDKEGKVKENELDVLAKNVDINKVIFEAPQ 208
>sp|A0JXJ8|OBG_ARTS2 GTPase obg OS=Arthrobacter sp. (strain FB24) GN=obg PE=3 SV=1
Length = 529
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 94 LELDSIAKNIGNHICRYFPQCAVL--LLDNKKLEALPKGKDRSPVMQVSAVFVCIELSNY 151
+E S K +G+H R+ +CA L +LD LEA DR P+ ++ + EL Y
Sbjct: 217 IEGASEGKGLGHHFLRHVERCAALVHVLDCGTLEA-----DRDPLSDLAIIEA--ELEKY 269
Query: 152 GVSVSF 157
V +S+
Sbjct: 270 AVDMSY 275
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 32 LLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLE-ISLIMIEEHYSAQGLGIVGYFHANER 90
LLG + D V++I + P GL ++ +S E +GL +VG++H++
Sbjct: 541 LLGGTYEEEDKVLKICSAEPCNSLSTGLQCEMDPVSQTQASEVLGVKGLSVVGWYHSHPA 600
Query: 91 FD 92
FD
Sbjct: 601 FD 602
>sp|Q6GIR7|53DR_STAAR Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain MRSA252) GN=SAR0778 PE=3 SV=1
Length = 180
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P+ + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYD 85
>sp|P66841|53DR_STAAN Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain N315) GN=SA0680 PE=3 SV=1
Length = 180
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P+ + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYD 85
>sp|P66840|53DR_STAAM Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV0725 PE=1 SV=1
Length = 180
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P+ + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPHAQEVVKKLTEHYD 85
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster
GN=CSN5 PE=1 SV=1
Length = 327
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEIS 66
++S A +K+V+HAR T V G++LG+V N +V A ++P+ + + +
Sbjct: 53 KISALALLKMVMHARSGGTLEVMGLMLGKVE-DNTMIVMDAFALPVEGTETRVNAQAQAY 111
Query: 67 LIMIEEHYSAQGLG----IVGYFHA 87
M +A+ +G VG++H+
Sbjct: 112 EYMTAYMEAAKEVGRMEHAVGWYHS 136
>sp|Q8NXN2|53DR_STAAW Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain MW2) GN=MW0687 PE=3 SV=1
Length = 180
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYD 85
>sp|Q6GBA5|53DR_STAAS Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain MSSA476) GN=SAS0690 PE=3 SV=1
Length = 180
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYD 85
>sp|Q5HHU8|53DR_STAAC Putative 5'(3')-deoxyribonucleotidase OS=Staphylococcus aureus
(strain COL) GN=SACOL0785 PE=3 SV=1
Length = 180
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 24 KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYS 75
K A+NG L V P++D ++ P F HL ++P + + + EHY
Sbjct: 34 KMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYD 85
>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1
Length = 3084
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 24 KTAAVNGVLLGRVSPQNDAV-VEIADSVPLFHSHLG 58
+T + NGVLLG S + DA+ +EI D LFH + G
Sbjct: 2930 RTTSKNGVLLGISSAKVDAIGLEIVDGKVLFHVNNG 2965
>sp|B6MUN4|MYSM1_BRAFL Histone H2A deubiquitinase MYSM1 OS=Branchiostoma floridae GN=MYSM1
PE=3 SV=1
Length = 809
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 7 ELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLE-I 65
++ A + + +HA TA V G LLG V ++ +E+A + P G+ ++ +
Sbjct: 593 KIHATALVTIDMHAHI-STAEVIG-LLGGVFHRDPGALEVASAEPCNSLSTGMQCEMDPV 650
Query: 66 SLIMIEEHYSAQGLGIVGYFHANERF 91
S E S G +VG++H++ F
Sbjct: 651 SQTQASEALSQAGYSVVGWYHSHPTF 676
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,075,918
Number of Sequences: 539616
Number of extensions: 2336970
Number of successful extensions: 4394
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4366
Number of HSP's gapped (non-prelim): 32
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)