Query 031148
Match_columns 165
No_of_seqs 113 out of 144
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 15:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o95_A 26S proteasome non-ATPa 99.8 3.7E-18 1.3E-22 135.4 10.8 111 6-124 10-130 (187)
2 4e0q_A COP9 signalosome comple 99.1 1.6E-09 5.4E-14 83.7 11.9 111 5-123 7-125 (141)
3 4b4t_V 26S proteasome regulato 98.9 5.7E-09 2E-13 89.4 11.6 112 6-123 27-145 (306)
4 2znr_A AMSH-like protease; met 98.5 1.1E-06 3.9E-11 69.9 10.5 111 6-123 11-125 (178)
5 3rzv_A STAM-binding protein; u 98.0 2.5E-05 8.7E-10 64.2 9.5 108 6-122 44-157 (211)
6 2kks_A Uncharacterized protein 98.0 8.1E-05 2.8E-09 56.5 10.8 102 6-119 2-108 (146)
7 4b4t_U RPN8, 26S proteasome re 97.9 0.0001 3.6E-09 63.5 12.2 108 6-121 8-125 (338)
8 2kcq_A MOV34/MPN/PAD-1 family; 97.9 4.1E-05 1.4E-09 58.6 8.1 103 6-119 1-110 (153)
9 1oi0_A AF2198, hypothetical pr 97.5 0.00092 3.1E-08 49.3 10.3 98 2-120 1-98 (124)
10 3bvp_A INT, TP901-1 integrase; 29.1 1.5E+02 0.0052 20.9 7.1 57 63-120 23-79 (138)
11 2l4c_A Endoplasmic reticulum r 25.6 1.6E+02 0.0055 20.9 5.7 64 68-141 30-93 (124)
12 2fz5_A Flavodoxin; alpha/beta 22.1 1.9E+02 0.0063 19.5 5.6 51 50-109 54-106 (137)
13 2x0j_A Malate dehydrogenase; o 20.3 66 0.0023 26.7 3.0 24 98-121 96-119 (294)
No 1
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.76 E-value=3.7e-18 Score=135.38 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=94.3
Q ss_pred eEEeHHhHHHHHhhhhcCC----CCeeeEEEEeeeCCCCCceeEEEeeeecccCCCCcch---HH--HHHHHHHHHHhhh
Q 031148 6 YELSQNAYIKLVLHARKHK----TAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP---NL--EISLIMIEEHYSA 76 (165)
Q Consensus 6 v~is~~AY~KmiLHAaKYP----~~aVnGlLLG~~~~~~~~~v~I~DaVPLfH~~l~LsP---ml--EvAL~qId~~~~~ 76 (165)
|+|++.++.||+.|+.|+| ...|+|+|||+..+ +.++|+||+|+.|......| ++ |....+.|.+.+.
T Consensus 10 V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~---~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~v 86 (187)
T 2o95_A 10 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQK---KVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKV 86 (187)
T ss_dssp EEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESS---SEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHTT
T ss_pred EEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcC---CEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHHh
Confidence 8999999999999999984 78999999998764 48999999999998766654 44 8888999998876
Q ss_pred C-CceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCccc
Q 031148 77 Q-GLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKL 124 (165)
Q Consensus 77 ~-gl~IvGYY~Ane~~~D~~~~~~a~kIadkI~~~~~~a~ll~vDn~kl 124 (165)
+ ++.||||||+++..++. ...|.+.+++.++++++|++|+.+.
T Consensus 87 ~~~~~iVGWY~s~~~~s~~-----d~~i~~~~~~~~~~~v~Livd~~~~ 130 (187)
T 2o95_A 87 NARERIVGWYHTGPKLHKN-----DIAINELMKRYCPNSVLVIIDVKPK 130 (187)
T ss_dssp SSSCEEEEEEECCSSCCTT-----HHHHHHHHTTTCTTCEEEEECCCTT
T ss_pred CCCCCEEEEEcCCCcCCcc-----cHHHHHHHHhcCCCCEEEEECCCCC
Confidence 6 89999999999877543 2347888899999999999999763
No 2
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.07 E-value=1.6e-09 Score=83.68 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=83.1
Q ss_pred eeEEeHHhHHHHHhhhhcC-----CCCeeeEEEEeeeCCCCCceeEEEeeeecccCCCC--cchHHHHHHHHHHHHhhh-
Q 031148 5 KYELSQNAYIKLVLHARKH-----KTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG--LLPNLEISLIMIEEHYSA- 76 (165)
Q Consensus 5 ~v~is~~AY~KmiLHAaKY-----P~~aVnGlLLG~~~~~~~~~v~I~DaVPLfH~~l~--LsPmlEvAL~qId~~~~~- 76 (165)
.|.+++.+-.||+=|+.+- ....|.|+|||+..+ ..++|+||.|+-|.... ...-.|-...+.|.+-+-
T Consensus 7 ~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~---~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k~v~ 83 (141)
T 4e0q_A 7 TISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKG---RNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQVF 83 (141)
T ss_dssp EEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEET---TEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHHHHS
T ss_pred EEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeC---CEEEEEEEEEecccCCCCceeecHHHHHHHHHHHHHhC
Confidence 4899999999999999874 235799999998755 48999999999986321 233446667777776654
Q ss_pred CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCcc
Q 031148 77 QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKK 123 (165)
Q Consensus 77 ~gl~IvGYY~Ane~~~D~~~~~~a~kIadkI~~~~~~a~ll~vDn~k 123 (165)
.+..|||||+.... +++....|-+.+++.+++++++++|-.+
T Consensus 84 ~~e~iVGWY~s~~~-----~~~~d~~i~~~~~~~~~~pV~L~~Dp~~ 125 (141)
T 4e0q_A 84 SDLDFIGWYTTGDN-----PTADDIKIQRQIAAINECPIMLQLNPLS 125 (141)
T ss_dssp TTCEEEEEEEEEC------------CHHHHHHHTTCCCEEEEESCSC
T ss_pred CCccEEEEEeCCCC-----CCcchHHHHHHHHHHCCCCEEEEECCCc
Confidence 57999999998653 4444457888888999999999999765
No 3
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.95 E-value=5.7e-09 Score=89.42 Aligned_cols=112 Identities=19% Similarity=0.294 Sum_probs=84.7
Q ss_pred eEEeHHhHHHHHhhhhcCCCCeeeEEEEeeeCCCCCceeEEEeeeecccCCCC-----cchHHHHHHHHHHHHhhh--CC
Q 031148 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG-----LLPNLEISLIMIEEHYSA--QG 78 (165)
Q Consensus 6 v~is~~AY~KmiLHAaKYP~~aVnGlLLG~~~~~~~~~v~I~DaVPLfH~~l~-----LsPmlEvAL~qId~~~~~--~g 78 (165)
|.||+.|..||+.||..-....|.|+|+|+..++ ..+.|+||.|+=|.... ..+..+. ......++ .+
T Consensus 27 V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~--~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~---~m~~~~~~v~~~ 101 (306)
T 4b4t_V 27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDD--YTVNVVDVFAMPQSGTGVSVEAVDDVFQA---KMMDMLKQTGRD 101 (306)
T ss_dssp EEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETT--TEEEEEEEECCCCEESSSCEECCCHHHHH---HHHHHHHHHSCC
T ss_pred EEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCC--eEEEEEEEEeCCcCCCCCchhcCCHHHHH---HHHHHHHHhCCC
Confidence 8999999999999998877789999999985444 47999999999665332 2332221 12223333 45
Q ss_pred ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCcc
Q 031148 79 LGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKK 123 (165)
Q Consensus 79 l~IvGYY~Ane~~~D~~~~~~a~kIadkI~~~~~~a~ll~vDn~k 123 (165)
..+|||||....+. .-|+..-.......+...+.++.|++|-.+
T Consensus 102 ~~vVGWYhShP~~~-~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~ 145 (306)
T 4b4t_V 102 QMVVGWYHSHPGFG-CWLSSVDVNTQKSFEQLNSRAVAVVVDPIQ 145 (306)
T ss_dssp CCCSEEEEECCSSS-CCCCHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred cceeeEEecCCCCC-CcCCHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 88999999987665 357888777777778889999999999754
No 4
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=98.47 E-value=1.1e-06 Score=69.88 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=81.1
Q ss_pred eEEeHHhHHHHHhhhhc-CCC-CeeeEEEEeeeCCCCCceeEEEeeeecccCCC--CcchHHHHHHHHHHHHhhhCCceE
Q 031148 6 YELSQNAYIKLVLHARK-HKT-AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHL--GLLPNLEISLIMIEEHYSAQGLGI 81 (165)
Q Consensus 6 v~is~~AY~KmiLHAaK-YP~-~aVnGlLLG~~~~~~~~~v~I~DaVPLfH~~l--~LsPmlEvAL~qId~~~~~~gl~I 81 (165)
+.|+...+.||+-||-. +|. ..|+|+|+|+..++ ...|++++|+=-... ....+-+. .+ -++....|+.+
T Consensus 11 v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~---~~~V~~v~~~pq~~t~~~~~~~~~~--e~-~~~~~~~~l~~ 84 (178)
T 2znr_A 11 VVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHN---EFTITHVIVPKQSAGPDYCDMENVE--EL-FNVQDQHDLLT 84 (178)
T ss_dssp EEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETT---EEEEEEEEECCEEEETTEEEECCHH--HH-HHHHHHHTCEE
T ss_pred EEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCC---CeEEEEEEeCCcCCCCCeeccCCHH--HH-HHHHHhCCCEE
Confidence 88999999999999986 575 78889999987543 678899987632111 11001011 11 12356789999
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCcc
Q 031148 82 VGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKK 123 (165)
Q Consensus 82 vGYY~Ane~~~D~~~~~~a~kIadkI~~~~~~a~ll~vDn~k 123 (165)
|||||...... ..||+.-.....+.+...++++.+++|-.+
T Consensus 85 vGwyHSHP~~~-~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~ 125 (178)
T 2znr_A 85 LGWIHTHPTQT-AFLSSVDLHTHCSYQLMLPEAIAIVCSPKH 125 (178)
T ss_dssp EEEEEECSSSC-SCCCHHHHHHHHHHHHHCTTCEEEEEEGGG
T ss_pred EEEEeCCCCCC-CCCCHHHHHHHHHHHhhcCCEEEEEEcCCC
Confidence 99999976444 578988888888888889999999988654
No 5
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=98.03 E-value=2.5e-05 Score=64.17 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=79.6
Q ss_pred eEEeHHhHHHHHhhhhcC-CC-CeeeEEEEeeeCCCCCceeEEEeeeecccCCCC----cchHHHHHHHHHHHHhhhCCc
Q 031148 6 YELSQNAYIKLVLHARKH-KT-AAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLG----LLPNLEISLIMIEEHYSAQGL 79 (165)
Q Consensus 6 v~is~~AY~KmiLHAaKY-P~-~aVnGlLLG~~~~~~~~~v~I~DaVPLfH~~l~----LsPmlEvAL~qId~~~~~~gl 79 (165)
|.|+...+-|++-||-.. |. ..|+|+|.|+..+ +..+|++++...-.... +....| +. .|....++
T Consensus 44 v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~---~~~~I~~v~~ppq~gt~~~v~~~~~~e----~~-~~~~~~~l 115 (211)
T 3rzv_A 44 VVVPGRLCPQFLQLASANTARGVATCGILCGKLMR---NEFTITHVLIPKQSAGSDYCNTENEEE----LF-LIQDQQGL 115 (211)
T ss_dssp EEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEET---TEEEEEEEEECCEEECSSCEEECCHHH----HH-HHHHHHTC
T ss_pred EEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCC---CCEEEEEEEeCCccCCCCceeccChHH----HH-HHHhhCCC
Confidence 889999999999999884 53 6888999998754 37888999854322111 111111 11 23345899
Q ss_pred eEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCc
Q 031148 80 GIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNK 122 (165)
Q Consensus 80 ~IvGYY~Ane~~~D~~~~~~a~kIadkI~~~~~~a~ll~vDn~ 122 (165)
.+|||||..... ...|++.-.....+.+...+..+.|++|-.
T Consensus 116 ~~vGWyHSHP~~-~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~ 157 (211)
T 3rzv_A 116 ITLGWIHTHPTQ-TAFLSSVDLHTHCSYQMMLPESVAIVCSPK 157 (211)
T ss_dssp EEEEEEEECTTS-CSCCCHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred EEEEEEeCCCCC-CCCCCHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 999999986533 357999998999999999999999998854
No 6
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=97.97 E-value=8.1e-05 Score=56.50 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=70.4
Q ss_pred eEEeHHhHHHHHhhhhcCCCCeeeEEEEeeeCCCCCceeEEEeeeecccC-----CCCcchHHHHHHHHHHHHhhhCCce
Q 031148 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHS-----HLGLLPNLEISLIMIEEHYSAQGLG 80 (165)
Q Consensus 6 v~is~~AY~KmiLHAaKYP~~aVnGlLLG~~~~~~~~~v~I~DaVPLfH~-----~l~LsPmlEvAL~qId~~~~~~gl~ 80 (165)
+.|+..++.+|+-||.+-....++|+|+|+..++ ...|+|++|+=-. .....|- .+..+..++++.|+.
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~---~~~v~~~~p~~n~~~~~~~f~~dp~---~~~~~~~~~~~~g~~ 75 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGD---DRWVERVYPLNNLDQSPEHFSMDPR---EQLTAVKDMRKNGWV 75 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETT---EEEEEEEECCCCCSCCSSSCCCCHH---HHHHHHHHHHHHTCE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCC---CcEEEEEEECCCcCCCCceEEECHH---HHHHHHHHHHHCCCE
Confidence 6899999999999999844479999999987543 5788999998411 1233443 333445566778999
Q ss_pred EEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEE
Q 031148 81 IVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLL 119 (165)
Q Consensus 81 IvGYY~Ane~~~D~~~~~~a~kIadkI~~~~~~a~ll~v 119 (165)
+||+||...... ..||..-.+.+ ..++...+.+
T Consensus 76 ivG~~HSHP~~~-~~PS~~D~~~~-----~~~~~~~lIv 108 (146)
T 2kks_A 76 MLGNFHSHPATP-ARPSAEDKRLA-----FDPSLSYLII 108 (146)
T ss_dssp EEEEEEEESSSC-SSCCHHHHTTC-----CSSSCEEEEE
T ss_pred EEEEEeCCCcCC-CCCCHHHHHhh-----hcCCCeEEEE
Confidence 999999986543 45776554432 2355555544
No 7
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.0001 Score=63.52 Aligned_cols=108 Identities=15% Similarity=0.221 Sum_probs=75.0
Q ss_pred eEEeHHhHHHHHhhhhc-CC--CCeeeEEEEeeeCCCCCceeEEEeeeecccCCCCcch-----HHHHHHHHHHHHhh-h
Q 031148 6 YELSQNAYIKLVLHARK-HK--TAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLP-----NLEISLIMIEEHYS-A 76 (165)
Q Consensus 6 v~is~~AY~KmiLHAaK-YP--~~aVnGlLLG~~~~~~~~~v~I~DaVPLfH~~l~LsP-----mlEvAL~qId~~~~-~ 76 (165)
|.+.+.+..+|.=|..+ .+ ...|.|.|||...+ ..++|+||.|+-|....-.+ =.+-.-.+.+.+-+ .
T Consensus 8 V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~---~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 8 VTIAPLVLLSALDHYERTQTKENKRCVGVILGDANS---STIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp EEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECS---SEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred EEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcC---CEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 89999999999999765 22 34799999998754 48999999999875432211 11223333343332 2
Q ss_pred CCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCC-CcEEEEEeC
Q 031148 77 QGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFP-QCAVLLLDN 121 (165)
Q Consensus 77 ~gl~IvGYY~Ane~~~D~~~~~~a~kIadkI~~~~~-~a~ll~vDn 121 (165)
.+..|||||+... .+++....|-+-+.+.++ +++++++|-
T Consensus 85 ~~e~iVGWY~tg~-----~~~~~d~~Ih~~~~~~~~~~pi~l~~d~ 125 (338)
T 4b4t_U 85 AKEKLIGWYHSGP-----KLRASDLKINELFKKYTQNNPLLLIVDV 125 (338)
T ss_dssp CSCEEEEEEECCS-----SCCSTHHHHHHHHGGGCCSCCCEEEECS
T ss_pred ccCCEEEEEecCC-----CCCccHHHHHHHHHhccCCCcEEEEecC
Confidence 6799999999753 345556678888888775 677777764
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=97.90 E-value=4.1e-05 Score=58.59 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=70.1
Q ss_pred eEEeHHhHHHHHhhhhcCCCCeeeEEEEeeeCCCCCceeEEEeeeecccC-------CCCcchHHHHHHHHHHHHhhhCC
Q 031148 6 YELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHS-------HLGLLPNLEISLIMIEEHYSAQG 78 (165)
Q Consensus 6 v~is~~AY~KmiLHAaKYP~~aVnGlLLG~~~~~~~~~v~I~DaVPLfH~-------~l~LsPmlEvAL~qId~~~~~~g 78 (165)
+.|+..++.||+-||.+---..++|+|+|+...+ ..+.|+|.+|+-=. ...+.|. -+..++.++++.|
T Consensus 1 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~--~~~~v~~~~p~~n~~~~~~~~~f~~dp~---~~~~~~~~~~~~g 75 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAYPEEGCGFLLGTVTDD--GDNRVAALHRATNRRSEQRTRRYELTAD---DYRAADAAAQEQG 75 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTT--SCEEEEEEEESSCCCCCCCSCCSSCCCC---SHHHHHHHHHHHT
T ss_pred CEeCHHHHHHHHHHHHhcCCcceEEEEEEeeccC--CCeEEEEEEECCCCCCCCCCcEEEECHH---HHHHHHHHHHHCC
Confidence 3689999999999999853479999999987522 36889999999532 1223443 2334455667789
Q ss_pred ceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEE
Q 031148 79 LGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLL 119 (165)
Q Consensus 79 l~IvGYY~Ane~~~D~~~~~~a~kIadkI~~~~~~a~ll~v 119 (165)
+.+||+||...... ..||..-.+-+ ..++...+++
T Consensus 76 ~~ivG~yHSHP~~~-~~PS~~D~~~~-----~~~~~~~lIv 110 (153)
T 2kcq_A 76 LDVVGVYHSHPDHP-ARPSATDLEEA-----TFPGFTYVIV 110 (153)
T ss_dssp CEEEEEEEECSSSS-SSCCHHHHHTC-----CCTTSEEEEE
T ss_pred CeEEEEEeCCCCCC-CCCCHHHHHhh-----hcCCCeEEEE
Confidence 99999999987543 46776543322 2255555444
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.54 E-value=0.00092 Score=49.31 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=62.9
Q ss_pred CcceeEEeHHhHHHHHhhhhcCCCCeeeEEEEeeeCCCCCceeEEEeeeecccCCCCcchHHHHHHHHHHHHhhhCCceE
Q 031148 2 GELKYELSQNAYIKLVLHARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGI 81 (165)
Q Consensus 2 ~~M~v~is~~AY~KmiLHAaKYP~~aVnGlLLG~~~~~~~~~v~I~DaVPLfH~~l~LsPmlEvAL~qId~~~~~~gl~I 81 (165)
|+| +.|+..++.+|+-||.+---..++|+|+|+. -.|+|.+|+= .. .-.|-.+.-. .....|+.+
T Consensus 1 ~~~-v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~-------~~v~~~~~~p-~~-~~~~~~~f~~-----~~~~~~~~i 65 (124)
T 1oi0_A 1 GSS-MKISRGLLKTILEAAKSAHPDEFIALLSGSK-------DVMDELIFLP-FV-SGSVSAVIHL-----DMLPIGMKV 65 (124)
T ss_dssp CCS-CEECHHHHHHHHHHHHHHTTSCCEEEEEEST-------TEECEEEECC-CC-C------------------CCCEE
T ss_pred CCE-EEEcHHHHHHHHHHHHhcCCCeeEEEEeccc-------CEEEEEEECC-CC-CCCcCceeee-----eeccCCCEE
Confidence 466 8899999999999997654469999999963 1678888876 32 2222111111 234588999
Q ss_pred EEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEe
Q 031148 82 VGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLD 120 (165)
Q Consensus 82 vGYY~Ane~~~D~~~~~~a~kIadkI~~~~~~a~ll~vD 120 (165)
+|.||..... ...||..-.+-+. .++...+.+.
T Consensus 66 vG~~HSHP~~-~~~PS~~D~~~~~-----~~~~~~lIvs 98 (124)
T 1oi0_A 66 FGTVHSHPSP-SCRPSEEDLSLFT-----RFGKYHIIVC 98 (124)
T ss_dssp EEEEEEESSS-CCSCCHHHHHHHH-----HSCSEEEEEE
T ss_pred EEEEEECcCC-CCccCHHHHHhhh-----cCCCEEEEEE
Confidence 9999998653 3567766655544 2566665554
No 10
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=29.06 E-value=1.5e+02 Score=20.87 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEe
Q 031148 63 LEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLD 120 (165)
Q Consensus 63 lEvAL~qId~~~~~~gl~IvGYY~Ane~~~D~~~~~~a~kIadkI~~~~~~a~ll~vD 120 (165)
+|-=...+++||+++|+.+++.|.-......+.--|--.++-+.+.+.--+ ++++-+
T Consensus 23 l~~Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d-~lvv~~ 79 (138)
T 3bvp_A 23 IDEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFD-TVLVYK 79 (138)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCS-EEEESS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence 344455678999999999999997542111111135555666666654333 444433
No 11
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=25.58 E-value=1.6e+02 Score=20.85 Aligned_cols=64 Identities=11% Similarity=0.178 Sum_probs=36.2
Q ss_pred HHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCccccccccCCCCCCceeEEE
Q 031148 68 IMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQVSA 141 (165)
Q Consensus 68 ~qId~~~~~~gl~IvGYY~Ane~~~D~~~~~~a~kIadkI~~~~~~a~ll~vDn~kl~~l~k~~~~~~~~~~~~ 141 (165)
.++++.-+++...||||+..- ++.. .+.-.+.++.+++--....++..+.. +-.-..|.+.+|.
T Consensus 30 ~e~e~fi~~~~v~VVGfF~~~----~~~~----~~~F~~~A~~~~d~~F~~t~~~~v~~--~~~v~~~~vvlfk 93 (124)
T 2l4c_A 30 PAAMEFIAATEVAVIGFFQDL----EIPA----VPILHSMVQKFPGVSFGISTDSEVLT--HYNITGNTICLFR 93 (124)
T ss_dssp HHHHHHHHTSSEEEEEECSCT----TSTH----HHHHHHHHHHCTTSEEEEECCHHHHH--HTTCCSSCEEEEE
T ss_pred HHHHHHHhcCCCEEEEEECCC----CChh----HHHHHHHHHhCCCceEEEEChHHHHH--HcCCCCCeEEEEE
Confidence 355666677899999999732 1111 34444555555665555666666533 2222245566665
No 12
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.13 E-value=1.9e+02 Score=19.48 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=22.8
Q ss_pred eecccCCCCcchH--HHHHHHHHHHHhhhCCceEEEEEEeCCCCCCCCCCHHHHHHHHHHHh
Q 031148 50 VPLFHSHLGLLPN--LEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICR 109 (165)
Q Consensus 50 VPLfH~~l~LsPm--lEvAL~qId~~~~~~gl~IvGYY~Ane~~~D~~~~~~a~kIadkI~~ 109 (165)
.|.+.. ..+|. +.-.+..+....+.+...++|-|-. ..+...+.+.+.+.+
T Consensus 54 ~p~y~~--~~~~~~~~~~fl~~l~~~l~~k~~~~~~t~g~-------~~~~~~~~l~~~l~~ 106 (137)
T 2fz5_A 54 CPAMGS--EELEDSVVEPFFTDLAPKLKGKKVGLFGSYGW-------GSGEWMDAWKQRTED 106 (137)
T ss_dssp CCCBTT--TBCCHHHHHHHHHHHGGGCSSCEEEEEEEESS-------CCSHHHHHHHHHHHH
T ss_pred ccccCC--CCCCHHHHHHHHHHhhhhcCCCEEEEEEecCC-------CCchHHHHHHHHHHH
Confidence 566544 34454 5555554432222233445554421 123455555555543
No 13
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=20.26 E-value=66 Score=26.71 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEeC
Q 031148 98 SIAKNIGNHICRYFPQCAVLLLDN 121 (165)
Q Consensus 98 ~~a~kIadkI~~~~~~a~ll~vDn 121 (165)
.+.+.++++|.++.|+++++++-|
T Consensus 96 ~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 96 GIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp HHHHHHHHHHHTTSTTCEEEECSS
T ss_pred HHHHHHHHHHHhcCCceEEEEecC
Confidence 456789999999999999999877
Done!