Query 031149
Match_columns 165
No_of_seqs 210 out of 1770
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl2_A V-type sodium ATP synth 100.0 2.7E-36 9.1E-41 235.3 18.1 146 10-158 10-155 (156)
2 2xqu_A C15_RING, ATP synthase 99.7 4E-17 1.4E-21 114.6 10.5 74 88-161 4-81 (82)
3 2wgm_A ATP synthase subunit C, 99.7 2.7E-16 9.3E-21 111.9 10.3 74 88-162 8-85 (89)
4 1wu0_A ATP synthase C chain; A 99.7 1.5E-16 5.2E-21 109.1 8.5 66 92-157 2-71 (72)
5 2x2v_A ATP synthase subunit C; 99.7 4.4E-16 1.5E-20 106.0 9.5 63 95-157 3-69 (69)
6 1a91_A F1FO ATPase subunit C; 99.6 1.3E-15 4.3E-20 106.3 10.2 67 93-159 8-78 (79)
7 2xqu_A C15_RING, ATP synthase 99.6 4E-15 1.4E-19 104.4 8.6 71 10-80 5-79 (82)
8 2x2v_A ATP synthase subunit C; 99.6 3.8E-15 1.3E-19 101.4 7.5 62 16-77 3-68 (69)
9 1wu0_A ATP synthase C chain; A 99.6 2.9E-15 1E-19 102.7 6.7 65 14-78 3-71 (72)
10 2xnd_J ATP synthase lipid-bind 99.5 1.5E-15 5.2E-20 104.2 2.9 66 91-157 3-72 (72)
11 4f4s_A ATP synthase subunit 9, 99.5 4.2E-14 1.4E-18 97.7 9.1 69 89-158 3-75 (76)
12 1a91_A F1FO ATPase subunit C; 99.5 4.1E-14 1.4E-18 98.6 8.3 66 14-79 8-77 (79)
13 2wgm_A ATP synthase subunit C, 99.5 4.9E-14 1.7E-18 100.2 8.3 68 12-80 11-82 (89)
14 2xnd_J ATP synthase lipid-bind 99.4 5.6E-14 1.9E-18 96.3 2.7 63 14-77 5-71 (72)
15 2bl2_A V-type sodium ATP synth 99.4 8.5E-13 2.9E-17 102.5 9.6 71 90-160 11-81 (156)
16 4f4s_A ATP synthase subunit 9, 99.2 1.7E-11 5.7E-16 84.6 6.9 66 13-79 6-75 (76)
No 1
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=100.00 E-value=2.7e-36 Score=235.29 Aligned_cols=146 Identities=26% Similarity=0.487 Sum_probs=140.5
Q ss_pred cchhHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccH
Q 031149 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYL 89 (165)
Q Consensus 10 ~~~~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~~li~~~~~e~~~IYglIia~li~~~i~~~~~~~~~ 89 (165)
.+|++.++|++++++++++|++||+++++.+++++++||||+++|++++++|||+++|||+|+++++.++++++ +++
T Consensus 10 ~~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~~~---~~~ 86 (156)
T 2bl2_A 10 GGMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLGSD---MSV 86 (156)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCCTT---CCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999988753 578
Q ss_pred HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031149 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
.++++++++|+++|++++++|++||+++++++++++||||.++|+++..+|+|+++||+++++++++++
T Consensus 87 ~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~~ii~~a~~Ea~ai~glvia~ll~~~ 155 (156)
T 2bl2_A 87 VQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATKGIIFAAMVETYAILGFVISFLLVLN 155 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999876
No 2
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.72 E-value=4e-17 Score=114.61 Aligned_cols=74 Identities=28% Similarity=0.475 Sum_probs=69.9
Q ss_pred cHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031149 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQ 161 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~ 161 (165)
.+.++++++++++++|++++++|++||+++++++++++|||| +|+++++..+++|+++||++++++++++..++
T Consensus 4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~p~ 81 (82)
T 2xqu_A 4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFANPF 81 (82)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999999999999999999998 78889999999999999999999999987654
No 3
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.68 E-value=2.7e-16 Score=111.94 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=70.0
Q ss_pred cHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 031149 88 YLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRAGQS 162 (165)
Q Consensus 88 ~~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~~~~ 162 (165)
++.++++++++|+++ ++++++|++||+++++++++++|||| +|+++++..+++|+++||+++++++++++.++-
T Consensus 8 ~~~~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~p~~ 85 (89)
T 2wgm_A 8 TVVLAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFV 85 (89)
T ss_dssp HHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSST
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999 99999999999999999999999998 699999999999999999999999999987754
No 4
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.68 E-value=1.5e-16 Score=109.15 Aligned_cols=66 Identities=27% Similarity=0.482 Sum_probs=62.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031149 92 GYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS 157 (165)
Q Consensus 92 ~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~ 157 (165)
+++++++++++|++++++|++||+++++++++++|||| +|+++++..+++|+++||++++++++++
T Consensus 2 ~~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 71 (72)
T 1wu0_A 2 SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG 71 (72)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999998 7777999999999999999999999876
No 5
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.66 E-value=4.4e-16 Score=106.02 Aligned_cols=63 Identities=24% Similarity=0.472 Sum_probs=59.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031149 95 HLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS 157 (165)
Q Consensus 95 ~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~ 157 (165)
++++++++|++++++|++||+++++++++++|||| +|+++++..+++|+++||++++++++++
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 69 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999999 6666999999999999999999999864
No 6
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.64 E-value=1.3e-15 Score=106.29 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=62.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031149 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSRA 159 (165)
Q Consensus 93 ~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~~ 159 (165)
+..+++++.+|++++++|++||+++++++++++|||| +|+++++..+++|+++||++++++++++..
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~ 78 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999998 888899999999999999999999998763
No 7
>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A
Probab=99.59 E-value=4e-15 Score=104.39 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=65.2
Q ss_pred cchhHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031149 10 TAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 10 ~~~~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~----~~~~li~~~~~e~~~IYglIia~li~~~i 80 (165)
+...+.++|++++++++++|+++|+|+++++++++++||||. ++++++..+|+|+++||++++++++.+..
T Consensus 5 ~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~~ 79 (82)
T 2xqu_A 5 LTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFAN 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344589999999999999999999999999999999999995 56699999999999999999999998763
No 8
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=99.58 E-value=3.8e-15 Score=101.37 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhHHh----HHHHHHHHHHHHHHHHHHHHHHH
Q 031149 16 FLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMK----SIVPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 16 ~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~~~----~li~~~~~e~~~IYglIia~li~ 77 (165)
++|++++++++++|+++|+|+++++++++++||||.++| +++..+|+|+++||++++++++.
T Consensus 3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lll 68 (69)
T 2x2v_A 3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLIL 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999995555 99999999999999999999985
No 9
>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}
Probab=99.58 E-value=2.9e-15 Score=102.73 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 031149 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIIST 78 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~ 78 (165)
+.++|++++++++++|+++|+|+++++++++++||||.+ +++++..+|+|+++||++++++++.+
T Consensus 3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf 71 (72)
T 1wu0_A 3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLG 71 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999999999999999999999955 44999999999999999999999865
No 10
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.55 E-value=1.5e-15 Score=104.15 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=61.2
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031149 91 DGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSS 157 (165)
Q Consensus 91 ~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~ 157 (165)
++++++++|+++ ++++++|+++|+++++++++++|||| +|+++++..+++|+++||++++++++++
T Consensus 3 ~~~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf 72 (72)
T 2xnd_J 3 TAAKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF 72 (72)
T ss_dssp TTTTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456789999999 99999999999999999999999996 7889999999999999999999998764
No 11
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.53 E-value=4.2e-14 Score=97.67 Aligned_cols=69 Identities=28% Similarity=0.376 Sum_probs=64.4
Q ss_pred HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031149 89 LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPK----LFVGMILILIFAEALALYGLIVGIILSSR 158 (165)
Q Consensus 89 ~~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~----l~~~~ii~~a~~E~~aI~glvva~ll~~~ 158 (165)
+..+.+++++|++. ++..++|+|+|.+.++.+++++|||| +|++++++.++.|+.+||+|+++|+++|-
T Consensus 3 lv~aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa 75 (76)
T 4f4s_A 3 LVLAAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG 75 (76)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788999999998 99999999999999999999999994 99999999999999999999999999873
No 12
>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A
Probab=99.52 E-value=4.1e-14 Score=98.62 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccch----hHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031149 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPE----LVMKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe----~~~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
+..+++++++|++++|+++|+|+++.+++++++|||| +++++++..+|+|+++||+++++|++.+.
T Consensus 8 m~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~ 77 (79)
T 1a91_A 8 LLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999 55579999999999999999999998754
No 13
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=99.51 E-value=4.9e-14 Score=100.24 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 031149 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPEL----VMKSIVPVVMAGVLGIYGLIIAVIISTGI 80 (165)
Q Consensus 12 ~~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~----~~~~li~~~~~e~~~IYglIia~li~~~i 80 (165)
..+.++|+++++ ++++|+++|+|+++.+++++++||||. ++++++..+|+|+++||++++++++.+..
T Consensus 11 ~~~~~igaGla~-la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~~ 82 (89)
T 2wgm_A 11 LAASAVGAGTAM-IAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYAN 82 (89)
T ss_dssp HHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999 999999999999999999999999995 88999999999999999999999998864
No 14
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=99.41 E-value=5.6e-14 Score=96.31 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHH
Q 031149 14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIIS 77 (165)
Q Consensus 14 ~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~ 77 (165)
+.++|+++++ ++++|+++|+|+++++++++++||||.+ +++++..+|+|+++||++++++++.
T Consensus 5 ~~~igaGLa~-l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lll 71 (72)
T 2xnd_J 5 AKFIGAGAAT-VGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLIL 71 (72)
T ss_dssp TTTTTTTGGG-GGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999 9999999999999999999999999955 5689999999999999999999875
No 15
>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*
Probab=99.41 E-value=8.5e-13 Score=102.54 Aligned_cols=71 Identities=20% Similarity=0.418 Sum_probs=68.2
Q ss_pred HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 031149 90 FDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAG 160 (165)
Q Consensus 90 ~~~~~~l~agl~~Gla~~gsgig~G~~~~~~~~~~ar~p~l~~~~ii~~a~~E~~aI~glvva~ll~~~~~ 160 (165)
...+.+++++++++++++++++|+++++.++++..+||||+++|+++..+++|+++|||++++++++++.+
T Consensus 11 ~~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~~~k~li~~~l~e~~~IYGlvva~li~~~l~ 81 (156)
T 2bl2_A 11 GMVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFVIAFLIFINLG 81 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHGGGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999875
No 16
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=99.24 E-value=1.7e-11 Score=84.62 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccccccchhH----HhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 031149 13 FFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELV----MKSIVPVVMAGVLGIYGLIIAVIISTG 79 (165)
Q Consensus 13 ~~~~lG~~la~gla~iGsg~G~g~ag~a~~~a~~~~Pe~~----~~~li~~~~~e~~~IYglIia~li~~~ 79 (165)
...++|++++. ++.+|+++|+|.+..+.+++++||||.. +.+++..++.|+.++|+|+++|++++.
T Consensus 6 aak~IGaGlA~-ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFa 75 (76)
T 4f4s_A 6 AAKYIGAGIST-IGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFG 75 (76)
T ss_dssp HHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-HHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45789999998 8899999999999999999999999854 568999999999999999999999764
Done!