BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031151
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 97/146 (66%), Gaps = 3/146 (2%)
Query: 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKIS 74
+Y+VFLSFRG DTR+ FT LY +L R KI TF DD+EL +G EI P LL AI SKI
Sbjct: 34 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIY 93
Query: 75 VVIFSQDYASSKWCLNELVEILECKSKNG-QIVVPVFHRVDPSDIRKQNGSFRDAFVKHE 133
V I S YA SKWCL EL EI+ + ++ +I++P+F+ VDPSD+R Q G ++ AF KH
Sbjct: 94 VPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHA 153
Query: 134 KQFKRTPEKVQKWRVALTQASNLSGW 159
+F + +Q W+ AL + +L GW
Sbjct: 154 NKF--DGQTIQNWKDALKKVGDLKGW 177
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 95/144 (65%), Gaps = 2/144 (1%)
Query: 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKIS 74
KYDVFLSFRG DTR NF S LY L R+ I+TF DD+EL G SP L + I+ S+ +
Sbjct: 7 TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 75 VVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRKQNGSFRDAFVKHEK 134
VV+ S++YA+S WCL+ELV I++ + K V+P+F+ V+P+ +R Q G + F KH
Sbjct: 67 VVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS 126
Query: 135 QFKRTPEKVQKWRVALTQASNLSG 158
+ PEKV KWR ALT + LSG
Sbjct: 127 --REDPEKVLKWRQALTNFAQLSG 148
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVV 76
+D+F+S ED D F L L + + DD LR GD + ++ + S+ +V
Sbjct: 21 HDIFISHAWEDKAD-FVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIV 79
Query: 77 IFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRKQNGSFRD 127
+ S + +W EL + + +S ++P++H+V ++ + + D
Sbjct: 80 VLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMAD 130
>pdb|3N54|B Chain B, Crystal Structure Of The Gerbc Protein
Length = 350
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 32 FTSHLYAALCRKKI----------KTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81
++ HL L +K+ FI D+ELRR + L A +G+ V
Sbjct: 68 YSDHLKVILLGEKLMRNQNVDQVLNHFIRDDELRRS-----SYLMAARGNAADVFTKGNP 122
Query: 82 YASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRKQNG-SFRDAFVKHEK 134
+L+++ NG+I++P+ R+ + + QNG S+ VK+EK
Sbjct: 123 NQQQPMPSEKLIDLTTHSGYNGKIMIPL--RIGRASVYSQNGYSYLIQAVKNEK 174
>pdb|3UCC|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCC|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-1-PgaPEP
pdb|3UCD|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
pdb|3UCD|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-2-PgaPEP
Length = 439
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKT 47
+ V +S R +T D F + L LC +IKT
Sbjct: 364 WGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|1TE6|A Chain A, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|1TE6|B Chain B, Crystal Structure Of Human Neuron Specific Enolase At 1.8
Angstrom
pdb|2AKM|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKM|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|A Chain A, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
pdb|2AKZ|B Chain B, Fluoride Inhibition Of Enolase: Crystal Structure Of The
Inhibitory Complex
Length = 439
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKT 47
+ V +S R +T D F + L LC +IKT
Sbjct: 364 WGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|3UJE|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJE|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-3-PgaPEP
pdb|3UJF|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJF|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-4-PgaPEP
pdb|3UJR|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJR|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-5-PgaPEP
pdb|3UJS|A Chain A, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
pdb|3UJS|B Chain B, Asymmetric Complex Of Human Neuron Specific
Enolase-6-PgaPEP
Length = 443
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKT 47
+ V +S R +T D F + L LC +IKT
Sbjct: 364 WGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|2XSX|A Chain A, Crystal Structure Of Human Beta Enolase Enob
pdb|2XSX|B Chain B, Crystal Structure Of Human Beta Enolase Enob
Length = 435
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKT 47
+ V +S R +T D F + L LC +IKT
Sbjct: 366 WGVMVSHRSGETEDTFIADLVVGLCTGQIKT 396
>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
Length = 434
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKT 47
+ V +S R +T D F + L LC +IKT
Sbjct: 365 WGVMVSHRSGETEDTFIADLVVGLCTGQIKT 395
>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
Length = 433
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKT 47
+ V +S R +T D F + L LC +IKT
Sbjct: 364 WGVMVSHRSGETEDTFIADLVVGLCTGQIKT 394
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 96 LECKSKNGQIVVPV-FHRVDPSDIRKQNGSFRDAFVKHEKQFKRTPEKVQKWRVALTQAS 154
LE + GQ+ VP +H P D+ K+ G A ++ EKQ + E+++ + +T+
Sbjct: 78 LEGAVQAGQLKVPPGYH---PLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQ 134
Query: 155 NLSG 158
+G
Sbjct: 135 MEAG 138
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin
Length = 235
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 96 LECKSKNGQIVVPV-FHRVDPSDIRKQNGSFRDAFVKHEKQFKRTPEKVQ 144
LE + GQ+ VP +H P D+ K+ G A ++ EKQ + E+++
Sbjct: 78 LEGAVQAGQLKVPPGYH---PLDVEKEWGKLHVAILEREKQLRSEFERLE 124
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFH|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFI|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFI|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFJ|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
pdb|3TFJ|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
Length = 369
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 128 AFVKHEKQFKRTPEKVQKWRVALTQASNLSGWDSRNI 164
AF E +K E VQ W VA + +SG DS +
Sbjct: 40 AFGSIEDSYKHLKEHVQIWDVAAERQVEISGKDSAEL 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,515,433
Number of Sequences: 62578
Number of extensions: 171110
Number of successful extensions: 410
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 13
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)