Query 031151
Match_columns 165
No_of_seqs 169 out of 1300
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03194 putative disease resi 100.0 6.8E-43 1.5E-47 264.5 13.3 137 10-162 20-156 (187)
2 PLN03210 Resistant to P. syrin 100.0 4.6E-41 1E-45 314.1 16.0 157 1-164 1-157 (1153)
3 smart00255 TIR Toll - interleu 99.9 2.8E-26 6.2E-31 166.8 13.6 137 16-155 1-139 (140)
4 PF01582 TIR: TIR domain; Int 99.9 3.8E-28 8.2E-33 178.2 3.4 133 19-151 1-140 (141)
5 PF13676 TIR_2: TIR domain; PD 99.8 4.3E-21 9.2E-26 133.0 1.5 87 19-112 1-87 (102)
6 KOG3678 SARM protein (with ste 99.3 8.4E-12 1.8E-16 106.4 8.0 93 13-111 609-709 (832)
7 PF08937 DUF1863: MTH538 TIR-l 98.9 3.7E-09 8E-14 76.5 5.7 91 17-112 1-108 (130)
8 PF08357 SEFIR: SEFIR domain; 98.3 3.9E-06 8.5E-11 61.6 8.8 65 18-82 2-70 (150)
9 PF10137 TIR-like: Predicted n 97.6 0.00032 6.9E-09 50.6 7.1 96 18-118 1-111 (125)
10 PF13271 DUF4062: Domain of un 95.6 0.062 1.3E-06 35.6 6.4 67 18-85 1-67 (83)
11 PF05014 Nuc_deoxyrib_tr: Nucl 94.1 0.68 1.5E-05 32.1 8.6 76 30-110 13-96 (113)
12 COG4271 Predicted nucleotide-b 93.9 0.3 6.5E-06 38.0 6.8 107 4-119 72-198 (233)
13 COG4916 Uncharacterized protei 92.3 0.16 3.5E-06 40.9 3.5 95 12-111 173-273 (329)
14 cd00860 ThrRS_anticodon ThrRS 87.2 3.8 8.3E-05 26.5 6.5 61 17-82 2-62 (91)
15 PF14258 DUF4350: Domain of un 85.8 5.7 0.00012 24.9 6.6 61 34-107 8-68 (70)
16 PF14359 DUF4406: Domain of un 84.8 8.9 0.00019 25.9 7.4 62 34-97 19-84 (92)
17 PF03129 HGTP_anticodon: Antic 83.2 3.9 8.5E-05 26.9 5.1 47 30-80 15-61 (94)
18 cd00738 HGTP_anticodon HGTP an 83.0 6.4 0.00014 25.5 6.1 60 17-81 2-64 (94)
19 COG4916 Uncharacterized protei 81.9 2.3 5.1E-05 34.4 4.1 100 13-115 3-107 (329)
20 cd02426 Pol_gamma_b_Cterm C-te 75.4 2.8 6E-05 30.1 2.5 33 30-62 43-78 (128)
21 cd00858 GlyRS_anticodon GlyRS 74.9 16 0.00036 25.4 6.4 62 16-83 26-89 (121)
22 cd02042 ParA ParA and ParB of 73.7 23 0.0005 23.4 6.8 63 19-83 3-74 (104)
23 PF09441 Abp2: ARS binding pro 71.0 1.5 3.2E-05 32.9 0.2 61 85-154 54-114 (175)
24 cd00861 ProRS_anticodon_short 67.5 18 0.00038 23.5 5.0 50 30-83 17-66 (94)
25 COG0400 Predicted esterase [Ge 65.6 28 0.00062 27.1 6.4 58 10-69 140-199 (207)
26 cd07373 2A5CPDO_A The alpha su 65.0 66 0.0014 25.9 8.7 78 30-110 90-173 (271)
27 TIGR00418 thrS threonyl-tRNA s 61.1 31 0.00068 30.6 6.7 62 15-81 469-530 (563)
28 cd00859 HisRS_anticodon HisRS 59.9 40 0.00087 21.1 6.0 58 18-80 3-60 (91)
29 COG0125 Tmk Thymidylate kinase 59.4 82 0.0018 24.5 8.1 98 19-118 4-141 (208)
30 PF10087 DUF2325: Uncharacteri 59.4 50 0.0011 22.0 6.4 58 31-90 10-68 (97)
31 cd07363 45_DOPA_Dioxygenase Th 57.0 54 0.0012 26.1 6.9 76 30-109 80-156 (253)
32 PF03437 BtpA: BtpA family; I 56.6 29 0.00064 28.0 5.2 108 37-151 134-253 (254)
33 COG1658 Small primase-like pro 56.3 28 0.00061 25.1 4.6 56 17-74 30-85 (127)
34 PRK12325 prolyl-tRNA synthetas 53.3 25 0.00054 30.4 4.6 65 16-84 345-411 (439)
35 PRK09194 prolyl-tRNA synthetas 52.7 24 0.00051 31.6 4.5 66 14-83 466-533 (565)
36 PRK14938 Ser-tRNA(Thr) hydrola 52.5 50 0.0011 28.4 6.1 61 16-81 274-334 (387)
37 cd01423 MGS_CPS_I_III Methylgl 51.1 23 0.0005 24.4 3.4 29 19-49 3-31 (116)
38 TIGR00334 5S_RNA_mat_M5 ribonu 49.2 43 0.00093 25.5 4.8 50 30-83 35-84 (174)
39 PF03358 FMN_red: NADPH-depend 49.2 93 0.002 22.0 7.6 80 30-112 17-115 (152)
40 CHL00201 syh histidine-tRNA sy 49.1 63 0.0014 27.8 6.4 60 16-80 325-384 (430)
41 PRK05339 PEP synthetase regula 48.3 79 0.0017 25.8 6.5 72 35-109 158-246 (269)
42 cd03364 TOPRIM_DnaG_primases T 47.5 26 0.00056 22.4 3.0 32 43-76 44-75 (79)
43 PF03720 UDPG_MGDP_dh_C: UDP-g 47.1 21 0.00046 24.3 2.7 54 26-79 12-75 (106)
44 PLN03194 putative disease resi 47.0 98 0.0021 23.9 6.5 65 42-110 24-88 (187)
45 PRK03991 threonyl-tRNA synthet 46.9 28 0.00061 31.6 4.1 61 16-81 499-559 (613)
46 cd01424 MGS_CPS_II Methylglyox 46.8 66 0.0014 21.8 5.2 62 18-81 2-76 (110)
47 PRK14799 thrS threonyl-tRNA sy 46.3 62 0.0014 29.0 6.1 60 16-80 438-497 (545)
48 PF03618 Kinase-PPPase: Kinase 46.2 87 0.0019 25.3 6.4 71 36-109 153-242 (255)
49 cd04141 Rit_Rin_Ric Rit/Rin/Ri 46.2 1.1E+02 0.0025 22.1 8.4 63 56-120 58-121 (172)
50 cd00862 ProRS_anticodon_zinc P 46.0 24 0.00053 27.1 3.1 63 15-81 9-77 (202)
51 PLN02530 histidine-tRNA ligase 45.6 74 0.0016 27.9 6.4 61 15-80 400-460 (487)
52 PF09837 DUF2064: Uncharacteri 45.5 1.1E+02 0.0023 21.6 7.4 87 11-108 5-94 (122)
53 KOG0095 GTPase Rab30, small G 45.3 1.3E+02 0.0029 22.7 7.9 76 55-132 63-141 (213)
54 PRK00413 thrS threonyl-tRNA sy 44.3 70 0.0015 28.9 6.2 61 16-81 539-599 (638)
55 KOG2792 Putative cytochrome C 44.1 40 0.00087 27.5 4.1 31 86-116 153-187 (280)
56 PRK08661 prolyl-tRNA synthetas 43.4 87 0.0019 27.5 6.5 63 16-82 287-355 (477)
57 PRK12305 thrS threonyl-tRNA sy 43.1 91 0.002 27.8 6.7 61 16-81 476-536 (575)
58 PHA00407 phage lambda Rz1-like 42.9 16 0.00035 24.0 1.4 25 138-162 23-52 (84)
59 COG3613 Nucleoside 2-deoxyribo 42.0 1.1E+02 0.0024 23.3 6.0 77 31-111 20-106 (172)
60 cd08584 PI-PLCc_GDPD_SF_unchar 41.8 73 0.0016 24.6 5.1 38 46-86 126-163 (192)
61 TIGR00409 proS_fam_II prolyl-t 41.7 20 0.00043 32.3 2.3 50 30-83 489-538 (568)
62 PRK10569 NAD(P)H-dependent FMN 41.5 1.1E+02 0.0023 23.3 6.1 83 31-116 18-112 (191)
63 cd04128 Spg1 Spg1p. Spg1p (se 41.3 1.4E+02 0.0031 22.0 6.7 58 58-119 60-117 (182)
64 COG1168 MalY Bifunctional PLP- 41.2 78 0.0017 27.2 5.6 47 61-107 147-195 (388)
65 cd06340 PBP1_ABC_ligand_bindin 40.0 1.5E+02 0.0033 24.0 7.2 63 18-81 146-208 (347)
66 COG0683 LivK ABC-type branched 39.7 1.9E+02 0.004 24.0 7.7 66 18-84 150-215 (366)
67 COG0710 AroD 3-dehydroquinate 39.4 1.6E+02 0.0034 23.5 6.8 76 30-110 78-155 (231)
68 cd00154 Rab Rab family. Rab G 38.8 1.1E+02 0.0023 20.9 5.4 29 56-84 57-86 (159)
69 PF09673 TrbC_Ftype: Type-F co 38.4 1.3E+02 0.0027 20.9 5.5 38 19-62 2-39 (113)
70 TIGR02298 HpaD_Fe 3,4-dihydrox 38.1 2.2E+02 0.0047 23.1 8.2 78 30-109 96-178 (282)
71 cd04142 RRP22 RRP22 subfamily. 37.1 1.6E+02 0.0035 22.1 6.5 54 64-120 74-130 (198)
72 TIGR02742 TrbC_Ftype type-F co 35.7 1.4E+02 0.0031 21.4 5.6 35 19-58 3-37 (130)
73 PRK12444 threonyl-tRNA synthet 35.7 1.4E+02 0.003 27.1 6.8 63 15-81 540-602 (639)
74 TIGR01753 flav_short flavodoxi 35.4 1.5E+02 0.0032 20.4 6.7 54 19-84 4-58 (140)
75 cd00532 MGS-like MGS-like doma 35.0 1.1E+02 0.0023 21.0 4.8 61 19-81 2-77 (112)
76 PF01113 DapB_N: Dihydrodipico 34.8 1.3E+02 0.0028 20.9 5.2 10 17-26 68-77 (124)
77 PLN00023 GTP-binding protein; 34.0 1.5E+02 0.0032 25.0 6.1 29 56-84 91-120 (334)
78 PF09886 DUF2113: Uncharacteri 33.3 2E+02 0.0044 22.2 6.3 54 27-98 128-184 (188)
79 PF08902 DUF1848: Domain of un 33.1 2.7E+02 0.0058 22.7 9.0 128 23-161 53-198 (266)
80 COG1058 CinA Predicted nucleot 33.1 68 0.0015 25.9 3.9 43 32-79 22-67 (255)
81 PF00350 Dynamin_N: Dynamin fa 33.1 1.6E+02 0.0034 20.9 5.7 46 62-110 120-165 (168)
82 COG2130 Putative NADP-dependen 32.5 1.3E+02 0.0029 25.2 5.5 60 16-84 196-256 (340)
83 PF11074 DUF2779: Domain of un 32.0 44 0.00095 24.1 2.4 33 61-95 61-93 (130)
84 cd00138 PLDc Phospholipase D. 31.7 96 0.0021 22.4 4.3 22 59-80 21-42 (176)
85 cd06342 PBP1_ABC_LIVBP_like Ty 31.5 2.6E+02 0.0057 22.1 7.8 53 19-73 138-191 (334)
86 PLN02908 threonyl-tRNA synthet 31.3 1.4E+02 0.003 27.5 6.1 60 16-80 589-648 (686)
87 cd06335 PBP1_ABC_ligand_bindin 31.1 2.6E+02 0.0057 22.6 7.2 20 30-49 152-171 (347)
88 PLN02734 glycyl-tRNA synthetas 30.9 60 0.0013 30.1 3.5 63 12-79 568-630 (684)
89 cd01867 Rab8_Rab10_Rab13_like 30.6 2E+02 0.0043 20.4 7.4 29 56-84 60-89 (167)
90 PF09413 DUF2007: Domain of un 30.6 52 0.0011 20.2 2.3 23 31-53 10-32 (67)
91 cd01857 HSR1_MMR1 HSR1/MMR1. 30.6 1.9E+02 0.0041 20.3 5.6 19 63-81 4-22 (141)
92 PF01976 DUF116: Protein of un 30.4 2.3E+02 0.0049 21.0 7.1 84 11-112 56-139 (158)
93 cd04117 Rab15 Rab15 subfamily. 29.9 2E+02 0.0044 20.3 6.4 62 56-120 57-119 (161)
94 TIGR00408 proS_fam_I prolyl-tR 29.9 1.6E+02 0.0036 25.7 6.0 64 15-82 281-349 (472)
95 PF02310 B12-binding: B12 bind 29.2 1.8E+02 0.0039 19.5 8.1 69 33-111 17-86 (121)
96 cd06366 PBP1_GABAb_receptor Li 29.1 3.1E+02 0.0066 22.1 7.3 51 19-71 138-191 (350)
97 COG1852 Uncharacterized conser 29.1 2E+02 0.0043 22.5 5.6 53 32-99 121-173 (209)
98 PF00258 Flavodoxin_1: Flavodo 29.1 1.1E+02 0.0025 21.3 4.2 45 30-81 11-56 (143)
99 PF08477 Miro: Miro-like prote 28.9 68 0.0015 21.3 2.9 46 65-111 68-113 (119)
100 TIGR03567 FMN_reduc_SsuE FMN r 28.8 2E+02 0.0043 21.1 5.6 79 31-112 17-107 (171)
101 cd01241 PH_Akt Akt pleckstrin 28.7 53 0.0011 22.2 2.3 17 138-154 86-102 (102)
102 PF12146 Hydrolase_4: Putative 28.6 82 0.0018 20.3 3.1 35 15-50 15-49 (79)
103 PRK05569 flavodoxin; Provision 28.6 2.1E+02 0.0045 20.0 6.6 56 19-85 7-62 (141)
104 PF13662 Toprim_4: Toprim doma 28.4 39 0.00085 21.6 1.5 33 38-72 40-74 (81)
105 PRK15057 UDP-glucose 6-dehydro 27.9 1.2E+02 0.0026 25.9 4.7 51 26-76 311-365 (388)
106 PRK07933 thymidylate kinase; V 27.3 1.8E+02 0.0038 22.4 5.3 30 20-49 2-33 (213)
107 PRK09271 flavodoxin; Provision 27.2 2.5E+02 0.0053 20.4 6.3 29 19-49 6-34 (160)
108 KOG1136 Predicted cleavage and 27.1 1.7E+02 0.0038 25.0 5.3 57 53-112 180-242 (501)
109 cd06379 PBP1_iGluR_NMDA_NR1 N- 26.9 2.8E+02 0.0061 22.8 6.8 15 31-45 169-183 (377)
110 smart00175 RAB Rab subfamily o 26.8 2.2E+02 0.0048 19.7 6.9 61 56-119 57-118 (164)
111 PF01990 ATP-synt_F: ATP synth 26.7 1.9E+02 0.0042 19.0 5.2 47 36-85 9-55 (95)
112 PF14162 YozD: YozD-like prote 26.4 75 0.0016 19.3 2.3 27 15-47 2-28 (57)
113 cd06386 PBP1_NPR_C_like Ligand 26.4 2.5E+02 0.0053 23.4 6.4 39 33-72 157-195 (387)
114 cd06328 PBP1_SBP_like_2 Peripl 26.4 3E+02 0.0065 22.1 6.8 53 18-72 138-191 (333)
115 COG1806 Uncharacterized protei 26.2 1.4E+02 0.0031 24.4 4.6 29 81-109 222-250 (273)
116 cd01260 PH_CNK Connector enhan 26.0 60 0.0013 21.3 2.1 16 138-153 81-96 (96)
117 COG2342 Predicted extracellula 25.9 1.3E+02 0.0028 24.9 4.3 44 62-111 33-79 (300)
118 PF09152 DUF1937: Domain of un 25.8 1.6E+02 0.0035 20.9 4.3 65 33-97 29-106 (116)
119 KOG4132 Uroporphyrinogen III s 25.7 1E+02 0.0023 24.7 3.6 50 34-86 146-201 (260)
120 cd01861 Rab6 Rab6 subfamily. 25.6 2.3E+02 0.0051 19.6 6.2 29 56-84 57-86 (161)
121 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 25.5 3.2E+02 0.007 21.2 7.5 62 56-120 57-119 (222)
122 PF09419 PGP_phosphatase: Mito 24.9 1.9E+02 0.0041 21.8 4.8 68 39-111 35-111 (168)
123 PRK10628 LigB family dioxygena 24.7 3.3E+02 0.0073 21.8 6.5 78 21-101 62-139 (246)
124 PF07894 DUF1669: Protein of u 24.6 2.8E+02 0.0061 22.8 6.1 78 45-138 121-198 (284)
125 cd06361 PBP1_GPC6A_like Ligand 24.4 3.1E+02 0.0066 23.2 6.6 21 30-50 186-206 (403)
126 cd01864 Rab19 Rab19 subfamily. 24.3 2.6E+02 0.0056 19.6 7.1 30 56-85 60-90 (165)
127 cd06346 PBP1_ABC_ligand_bindin 24.1 3.1E+02 0.0068 21.7 6.4 42 30-72 151-192 (312)
128 cd01266 PH_Gab Gab (Grb2-assoc 24.0 73 0.0016 21.6 2.3 17 138-154 92-108 (108)
129 cd06365 PBP1_Pheromone_recepto 23.8 4.8E+02 0.01 22.5 8.9 21 30-50 186-206 (469)
130 PF00071 Ras: Ras family; Int 23.7 2.6E+02 0.0056 19.4 7.2 60 58-120 59-118 (162)
131 TIGR02690 resist_ArsH arsenica 23.6 3.6E+02 0.0079 21.1 8.3 73 12-85 22-104 (219)
132 PF01380 SIS: SIS domain SIS d 23.5 1.1E+02 0.0024 20.7 3.3 54 17-83 56-110 (131)
133 cd04127 Rab27A Rab27a subfamil 23.4 2.8E+02 0.0061 19.7 7.5 30 56-85 71-101 (180)
134 cd04121 Rab40 Rab40 subfamily. 23.4 3.2E+02 0.0069 20.4 6.2 61 56-120 63-124 (189)
135 COG0124 HisS Histidyl-tRNA syn 23.2 3.6E+02 0.0078 23.6 6.8 63 13-80 332-394 (429)
136 KOG1954 Endocytosis/signaling 23.1 2.4E+02 0.0052 24.6 5.6 73 54-129 165-237 (532)
137 TIGR00177 molyb_syn molybdenum 23.1 1.4E+02 0.003 21.4 3.7 44 31-76 27-72 (144)
138 cd01251 PH_centaurin_alpha Cen 22.9 94 0.002 21.0 2.7 19 138-156 84-102 (103)
139 cd06371 PBP1_sensory_GC_DEF_li 22.7 4.5E+02 0.0097 21.8 7.9 54 30-84 146-202 (382)
140 cd01238 PH_Tec Tec pleckstrin 22.7 74 0.0016 21.7 2.1 16 138-153 91-106 (106)
141 PTZ00445 p36-lilke protein; Pr 22.6 2E+02 0.0043 22.8 4.7 20 30-49 28-47 (219)
142 PF07283 TrbH: Conjugal transf 22.3 1.6E+02 0.0034 21.1 3.7 31 18-51 26-56 (121)
143 TIGR01101 V_ATP_synt_F vacuola 22.2 1.2E+02 0.0027 21.3 3.2 46 58-113 46-91 (115)
144 cd04114 Rab30 Rab30 subfamily. 22.2 2.8E+02 0.0062 19.4 7.5 29 56-84 64-93 (169)
145 PF14528 LAGLIDADG_3: LAGLIDAD 22.2 1.3E+02 0.0028 18.7 3.1 32 18-51 21-52 (77)
146 COG0415 PhrB Deoxyribodipyrimi 22.1 3.3E+02 0.0072 24.0 6.4 86 34-129 58-147 (461)
147 PF02337 Gag_p10: Retroviral G 22.0 76 0.0016 21.5 2.0 21 30-50 8-28 (90)
148 cd04122 Rab14 Rab14 subfamily. 21.9 2.9E+02 0.0064 19.4 7.1 62 56-120 59-121 (166)
149 cd06327 PBP1_SBP_like_1 Peripl 21.8 4.2E+02 0.0091 21.1 7.1 40 30-71 149-189 (334)
150 PF15409 PH_8: Pleckstrin homo 21.8 81 0.0017 21.2 2.1 15 139-153 74-88 (89)
151 TIGR00389 glyS_dimeric glycyl- 21.7 3.3E+02 0.0071 24.7 6.4 63 15-82 456-519 (551)
152 PRK13883 conjugal transfer pro 21.6 1.6E+02 0.0034 21.9 3.8 19 31-49 64-82 (151)
153 KOG1610 Corticosteroid 11-beta 21.5 1.1E+02 0.0024 25.6 3.2 30 18-51 31-60 (322)
154 cd01219 PH_FGD FGD (faciogenit 21.5 93 0.002 20.9 2.4 18 138-155 83-100 (101)
155 PRK13762 tRNA-modifying enzyme 21.4 3.3E+02 0.0071 22.5 6.1 59 17-82 131-189 (322)
156 PF13289 SIR2_2: SIR2-like dom 21.4 2.8E+02 0.0061 19.0 5.2 18 31-49 75-92 (143)
157 smart00233 PH Pleckstrin homol 21.4 94 0.002 19.1 2.3 17 138-154 85-101 (102)
158 cd04124 RabL2 RabL2 subfamily. 21.4 3E+02 0.0066 19.4 7.6 59 56-118 57-116 (161)
159 PRK05568 flavodoxin; Provision 21.3 2.9E+02 0.0063 19.2 6.7 55 19-85 7-62 (142)
160 COG3286 Uncharacterized protei 21.2 3.3E+02 0.0071 21.3 5.5 47 105-157 147-197 (204)
161 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.2 1.5E+02 0.0032 20.1 3.5 27 19-48 51-77 (126)
162 PF07429 Glyco_transf_56: 4-al 21.1 1.3E+02 0.0027 25.7 3.5 47 36-84 300-347 (360)
163 PF04244 DPRP: Deoxyribodipyri 21.0 3.4E+02 0.0075 21.3 5.8 16 31-46 78-93 (224)
164 KOG0395 Ras-related GTPase [Ge 20.9 3.3E+02 0.0071 20.7 5.6 61 58-120 62-122 (196)
165 cd04886 ACT_ThrD-II-like C-ter 20.8 1.9E+02 0.0042 16.9 3.8 33 14-48 40-72 (73)
166 cd02951 SoxW SoxW family; SoxW 20.8 2.8E+02 0.0061 18.8 6.2 30 61-92 3-33 (125)
167 cd04140 ARHI_like ARHI subfami 20.7 3.1E+02 0.0068 19.3 6.9 52 65-119 67-121 (165)
168 PRK09004 FMN-binding protein M 20.6 2.9E+02 0.0063 19.8 5.0 43 30-83 16-58 (146)
169 PRK08155 acetolactate synthase 20.3 3.4E+02 0.0075 24.0 6.4 36 31-71 14-49 (564)
170 PRK10076 pyruvate formate lyas 20.3 4.2E+02 0.009 20.5 6.1 28 29-56 52-79 (213)
171 PF01915 Glyco_hydro_3_C: Glyc 20.2 4E+02 0.0087 20.3 10.7 86 30-119 46-147 (227)
172 PF02230 Abhydrolase_2: Phosph 20.1 2.5E+02 0.0054 21.1 4.8 46 16-63 155-203 (216)
173 COG3384 Aromatic ring-opening 20.0 4E+02 0.0087 21.8 6.0 72 30-103 92-163 (268)
174 COG0431 Predicted flavoprotein 20.0 3.8E+02 0.0083 20.0 6.5 55 30-85 17-81 (184)
No 1
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=6.8e-43 Score=264.49 Aligned_cols=137 Identities=34% Similarity=0.585 Sum_probs=125.2
Q ss_pred CCCCCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHH
Q 031151 10 SSSSSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCL 89 (165)
Q Consensus 10 ~~~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~ 89 (165)
|+.....|||||||++.|+|+.|+.+|+.+|+++||++|+|.+++.+|+.+.+.|.+||++|+++|+||||+|+.|.||+
T Consensus 20 ~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCL 99 (187)
T PLN03194 20 SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCL 99 (187)
T ss_pred CCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceeeEEeecCCchhhcccCcHHHHHHHhHHhcCCChHHHHHHHHHHHHhhcccCcccc
Q 031151 90 NELVEILECKSKNGQIVVPVFHRVDPSDIRKQNGSFRDAFVKHEKQFKRTPEKVQKWRVALTQASNLSGWDSR 162 (165)
Q Consensus 90 ~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~G~~~~ 162 (165)
+||..++++. ..||||||+|+|++|++|.. ...+.+++++||.||++|++++|++++
T Consensus 100 dEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~------------~~~~~e~v~~Wr~AL~~va~l~G~~~~ 156 (187)
T PLN03194 100 HELALIMESK----KRVIPIFCDVKPSQLRVVDN------------GTCPDEEIRRFNWALEEAKYTVGLTFD 156 (187)
T ss_pred HHHHHHHHcC----CEEEEEEecCCHHHhhcccc------------CCCCHHHHHHHHHHHHHHhccccccCC
Confidence 9999999753 48999999999999999732 112468999999999999999999875
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.6e-41 Score=314.06 Aligned_cols=157 Identities=50% Similarity=0.818 Sum_probs=147.3
Q ss_pred CCCCCCCCCCCCCCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 1 MASSSSTAYSSSSSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 1 ~~~~~s~~~~~~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
||+|+|+ +..++|||||||+|+|+|+.|+.||+.+|.++||++|.|+ ++..|+.+..++.+||++|++.|+|+|+
T Consensus 1 ~~~~~~~----~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~ 75 (1153)
T PLN03210 1 MASSSSS----SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSK 75 (1153)
T ss_pred CCCCCCC----CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecC
Confidence 6666655 4678999999999999999999999999999999999987 6999999999999999999999999999
Q ss_pred CCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhcccCcHHHHHHHhHHhcCCChHHHHHHHHHHHHhhcccCcc
Q 031151 81 DYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRKQNGSFRDAFVKHEKQFKRTPEKVQKWRVALTQASNLSGWD 160 (165)
Q Consensus 81 ~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~G~~ 160 (165)
+|+.|.||++||.++++|+++.++.||||||+|+|++|++|+|.||++|.+++++. +++++++||.||++|++++|++
T Consensus 76 ~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~ 153 (1153)
T PLN03210 76 NYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYH 153 (1153)
T ss_pred CcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCcee
Confidence 99999999999999999998899999999999999999999999999999988765 4689999999999999999999
Q ss_pred ccCC
Q 031151 161 SRNI 164 (165)
Q Consensus 161 ~~~~ 164 (165)
+.+.
T Consensus 154 ~~~~ 157 (1153)
T PLN03210 154 SQNW 157 (1153)
T ss_pred cCCC
Confidence 8653
No 3
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.94 E-value=2.8e-26 Score=166.78 Aligned_cols=137 Identities=40% Similarity=0.683 Sum_probs=115.6
Q ss_pred eecEEEeccc-CCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHH
Q 031151 16 KYDVFLSFRG-EDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVE 94 (165)
Q Consensus 16 ~~DVFISy~~-~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~ 94 (165)
+|||||||++ .+..+.||.+|...|...|+.+|.|... +|.....+|.++|++|+++|+|+||+|+.|+||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~--~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE--PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc--cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5899999999 3445789999999999999999999753 333333499999999999999999999999999999999
Q ss_pred HHHHHHh-cCCceeeEEeecCCchhhcccCcHHHHHHHhHHhcCCChHHHHHHHHHHHHhhc
Q 031151 95 ILECKSK-NGQIVVPVFHRVDPSDIRKQNGSFRDAFVKHEKQFKRTPEKVQKWRVALTQASN 155 (165)
Q Consensus 95 a~~~~~~-~~~~iiPV~~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~ 155 (165)
++++..+ ...+||||+++..|+++..+.+.++..+..+......+..+ +.|+.++..+.+
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 9988744 66799999999989999999999999998886565543333 789999987764
No 4
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.94 E-value=3.8e-28 Score=178.18 Aligned_cols=133 Identities=32% Similarity=0.559 Sum_probs=117.8
Q ss_pred EEEecccCCCchhHHHHHHHHHhcC--CcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHH
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRK--KIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEIL 96 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~ 96 (165)
|||||++.+.++.|+.+|..+|++. |+++|++++|+.+|..+.++|.++|++|+++|+|+|++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999333578999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCceeeEEeecCCchhh-cccCcHHHHHHHhHHhcCCC--hHHHHHHHHHHH
Q 031151 97 ECKSKN--GQIVVPVFHRVDPSDIR-KQNGSFRDAFVKHEKQFKRT--PEKVQKWRVALT 151 (165)
Q Consensus 97 ~~~~~~--~~~iiPV~~~v~p~~v~-~~~~~f~~~f~~~~~~~~~~--~~~~~~W~~al~ 151 (165)
++.... ...|+|||+++.+.+++ .+.+.|+..|..+......+ .+....|+.++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 998654 47999999999999999 79999999998888877643 578899999875
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.81 E-value=4.3e-21 Score=132.96 Aligned_cols=87 Identities=31% Similarity=0.569 Sum_probs=76.1
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHH
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILEC 98 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~ 98 (165)
|||||++.| ..+|..|...|++.|+++|+|. ++.+|+.+.+.|.++|++|+++|+++||+|.+|+||..|+..|.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~-- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW-- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH--
Confidence 899999999 5799999999999999999997 99999999999999999999999999999999999999999994
Q ss_pred HHhcCCceeeEEee
Q 031151 99 KSKNGQIVVPVFHR 112 (165)
Q Consensus 99 ~~~~~~~iiPV~~~ 112 (165)
+.+.+||||+++
T Consensus 76 --~~~~~iipv~~~ 87 (102)
T PF13676_consen 76 --KRGKPIIPVRLD 87 (102)
T ss_dssp --CTSESEEEEECS
T ss_pred --HCCCEEEEEEEC
Confidence 345589999965
No 6
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.29 E-value=8.4e-12 Score=106.36 Aligned_cols=93 Identities=26% Similarity=0.456 Sum_probs=81.1
Q ss_pred CCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc--------C
Q 031151 13 SSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA--------S 84 (165)
Q Consensus 13 ~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~--------~ 84 (165)
-+++.||||||++.- ...+|..|.-.|+-+||+||+|.+.+..|.. .+.+.+.|...+.+|+|+||+.+ .
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 567899999998774 5789999999999999999999999999975 56889999999999999999975 3
Q ss_pred chhHHHHHHHHHHHHHhcCCceeeEEe
Q 031151 85 SKWCLNELVEILECKSKNGQIVVPVFH 111 (165)
Q Consensus 85 S~wc~~El~~a~~~~~~~~~~iiPV~~ 111 (165)
-.|...||..|+++.+ .|||||-
T Consensus 687 eDWVHKEl~~Afe~~K----NIiPI~D 709 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQK----NIIPIFD 709 (832)
T ss_pred HHHHHHHHHHHHHhcC----Ceeeeec
Confidence 5788889998887654 9999984
No 7
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.88 E-value=3.7e-09 Score=76.50 Aligned_cols=91 Identities=22% Similarity=0.390 Sum_probs=49.5
Q ss_pred ecEEEecccCCCchhHHHHHHHHHhcC-------CcEE----------EeeCCCCCCCCcchHHHHHHHhcCCeEEEEEe
Q 031151 17 YDVFLSFRGEDTRDNFTSHLYAALCRK-------KIKT----------FIDDEELRRGDEISPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 17 ~DVFISy~~~D~~~~fv~~L~~~L~~~-------gi~v----------~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS 79 (165)
|.|||||++.|. ...+..|...+... ++.. +-+..+......+.+.|.+.|..|.++|++++
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 579999999983 23677777777652 2211 12222223445788999999999999999999
Q ss_pred cCCcCchhHHHHHHHHHHHHHhcCCceeeEEee
Q 031151 80 QDYASSKWCLNELVEILECKSKNGQIVVPVFHR 112 (165)
Q Consensus 80 ~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~ 112 (165)
++...|.|+..|+..+++ .+..||.|.+.
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~ 108 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP 108 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence 999999999999999875 56688888864
No 8
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=98.34 E-value=3.9e-06 Score=61.65 Aligned_cols=65 Identities=18% Similarity=0.300 Sum_probs=54.5
Q ss_pred cEEEecccCCCc-hhHHHHHHHHHhcC-CcEEEeeCCCCCC--CCcchHHHHHHHhcCCeEEEEEecCC
Q 031151 18 DVFLSFRGEDTR-DNFTSHLYAALCRK-KIKTFIDDEELRR--GDEISPALLNAIQGSKISVVIFSQDY 82 (165)
Q Consensus 18 DVFISy~~~D~~-~~fv~~L~~~L~~~-gi~v~~d~~~~~~--G~~~~~~i~~~I~~S~~~I~vlS~~~ 82 (165)
-|||||++.... ...|..|+..|++. |+.|.+|.++... +..+..=+.+.+++++.+|+|+||.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 499999985432 46799999999999 9999999988844 76777778889999999999999554
No 9
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=97.60 E-value=0.00032 Score=50.61 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=70.7
Q ss_pred cEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCC-------------cC
Q 031151 18 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDY-------------AS 84 (165)
Q Consensus 18 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~-------------~~ 84 (165)
.|||.|+ .| ...+..+...|+..|+.+.+-......|..+.+.+.+.+.+++..|++++|+= ..
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a 77 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA 77 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence 3899998 55 47889999999988887666554669999999999999999999999999852 22
Q ss_pred chhHHHHHHHHHHHHHhcCCceeeEEee--cCCchh
Q 031151 85 SKWCLNELVEILECKSKNGQIVVPVFHR--VDPSDI 118 (165)
Q Consensus 85 S~wc~~El~~a~~~~~~~~~~iiPV~~~--v~p~~v 118 (165)
......|+..++.+. +..+++-+.-+ -.|+|+
T Consensus 78 R~NVifE~G~f~g~L--Gr~rv~~l~~~~v~~PSDl 111 (125)
T PF10137_consen 78 RQNVIFELGLFIGKL--GRERVFILVKGGVELPSDL 111 (125)
T ss_pred ccceeehhhHHHhhc--CcceEEEEEcCCccCCccc
Confidence 344678998887642 23455555432 135554
No 10
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=95.63 E-value=0.062 Score=35.61 Aligned_cols=67 Identities=18% Similarity=0.125 Sum_probs=48.4
Q ss_pred cEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCc
Q 031151 18 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASS 85 (165)
Q Consensus 18 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S 85 (165)
.||||-.-.|. +..-..|.+.|.+.|+.+..-+.=-..+..-.+.+.+.|++|+++|.++...|-..
T Consensus 1 rVFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~ 67 (83)
T PF13271_consen 1 RVFISSTFRDL-KEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV 67 (83)
T ss_pred CEEEecChhhH-HHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence 38999887875 34556777888877776544221112355666788899999999999999998653
No 11
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=94.07 E-value=0.68 Score=32.12 Aligned_cols=76 Identities=16% Similarity=0.098 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCC-CC---CCC----cchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHh
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEE-LR---RGD----EISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSK 101 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~-~~---~G~----~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~ 101 (165)
..+...+.+.|+++|+.++...+. .. .+. .+.+.-.++|++|+++|+++.+.- .+.-+..|+..|..
T Consensus 13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~a---- 87 (113)
T PF05014_consen 13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYA---- 87 (113)
T ss_dssp HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHH----
Confidence 578899999999999999886521 11 122 333444578999999999998755 56678889999865
Q ss_pred cCCceeeEE
Q 031151 102 NGQIVVPVF 110 (165)
Q Consensus 102 ~~~~iiPV~ 110 (165)
.+.+|+-+.
T Consensus 88 lgkpv~~~~ 96 (113)
T PF05014_consen 88 LGKPVILLT 96 (113)
T ss_dssp TTSEEEEEE
T ss_pred CCCEEEEEE
Confidence 344555444
No 12
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=93.87 E-value=0.3 Score=37.96 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCceecEEEecccCCCchhHHHHHHHHHhcC--CcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 4 SSSTAYSSSSSCKYDVFLSFRGEDTRDNFTSHLYAALCRK--KIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 4 ~~s~~~~~~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
.|..+.+.+.-+ .|||-|+++ ..|.....+|.+. -..+|.|. -+..|..+.+.+.+-|.++...|++.+|+
T Consensus 72 ~~qna~t~p~~k--kvFvv~ghd----~iArael~allrd~~l~~vi~d~-~~~~g~~ile~lek~i~~v~FAi~latPD 144 (233)
T COG4271 72 APQNAATMPNLK--KVFVVSGHD----AIARAELEALLRDWKLEPVILDG-LFSEGQTILESLEKYIAEVKFAIVLATPD 144 (233)
T ss_pred CcccccccCCce--eEEEEeccH----HHHHHHHHHHhhccccceEEecC-cccccHHHHHHHHHHhhhceEEEEEecCc
Confidence 345545555555 999999654 3777777777643 34677777 57889999999999999999999999998
Q ss_pred Cc--------------CchhHHHHHHHHHHHHHhcCCceeeEEee----cCCchhh
Q 031151 82 YA--------------SSKWCLNELVEILECKSKNGQIVVPVFHR----VDPSDIR 119 (165)
Q Consensus 82 ~~--------------~S~wc~~El~~a~~~~~~~~~~iiPV~~~----v~p~~v~ 119 (165)
=. .......||..++.+. ++.+|+-+.-+ --|||+.
T Consensus 145 Dkgy~~~~~~~k~~praRqNVifELGm~mgrL--gRkrv~Il~k~~envelPSDi~ 198 (233)
T COG4271 145 DKGYRAVHSREKAFPRARQNVIFELGMFMGRL--GRKRVMILMKRDENVELPSDIA 198 (233)
T ss_pred ccccccccchhhccccccccchhhHhhHHhhc--ccceEEEEecccccccCccccC
Confidence 43 1223567888877642 23355544432 2377764
No 13
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=92.31 E-value=0.16 Score=40.93 Aligned_cols=95 Identities=19% Similarity=0.117 Sum_probs=65.4
Q ss_pred CCCceecEEEecccCCCchhHHHHHHHHHhcC--CcEEEeeCC---CCCCCCcchHHHHHHHh-cCCeEEEEEecCCcCc
Q 031151 12 SSSCKYDVFLSFRGEDTRDNFTSHLYAALCRK--KIKTFIDDE---ELRRGDEISPALLNAIQ-GSKISVVIFSQDYASS 85 (165)
Q Consensus 12 ~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~---~~~~G~~~~~~i~~~I~-~S~~~I~vlS~~~~~S 85 (165)
...+.||+=|||.++- +.+|+.+..+++.. -+..|+|-. -+.+|+ +.+-+...-. .|++.+++...+|...
T Consensus 173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K 249 (329)
T COG4916 173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICK 249 (329)
T ss_pred ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEe
Confidence 3456799999999986 68999999999843 466788742 223333 3333333333 4777888899999999
Q ss_pred hhHHHHHHHHHHHHHhcCCceeeEEe
Q 031151 86 KWCLNELVEILECKSKNGQIVVPVFH 111 (165)
Q Consensus 86 ~wc~~El~~a~~~~~~~~~~iiPV~~ 111 (165)
.||..|...+-... .-+.+.||.|
T Consensus 250 ~~c~~E~~~~r~~~--~~d~~~rI~~ 273 (329)
T COG4916 250 STCHIEGLEGRLNP--ILDTGFRIKY 273 (329)
T ss_pred eeeccchhhccccc--cccccceEEE
Confidence 99999877653221 1236677776
No 14
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=87.19 E-value=3.8 Score=26.51 Aligned_cols=61 Identities=8% Similarity=0.117 Sum_probs=40.9
Q ss_pred ecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCC
Q 031151 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDY 82 (165)
Q Consensus 17 ~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~ 82 (165)
++|+|...+.+. ...+..+...|++.|+++-+|.+. ..+...+..|-+.---.++++.++-
T Consensus 2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~~----~~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLRN----EKLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECcch
Confidence 677776654432 567889999999999999998643 4555566666554444555555443
No 15
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=85.84 E-value=5.7 Score=24.90 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCcee
Q 031151 34 SHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVV 107 (165)
Q Consensus 34 ~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~ii 107 (165)
..++..|++.|+.|-.... ..+.+.....++++++|.+.-+. ..++....+..+.++..||
T Consensus 8 ~a~~~~L~~~g~~v~~~~~-----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 8 YALYQLLEEQGVKVERWRK-----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred HHHHHHHHHCCCeeEEecc-----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence 4567778888998854331 13345568889999999966553 3445544444444444443
No 16
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=84.85 E-value=8.9 Score=25.92 Aligned_cols=62 Identities=10% Similarity=-0.035 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCcEEEeeCCC-CCCCCcchHHHH---HHHhcCCeEEEEEecCCcCchhHHHHHHHHHH
Q 031151 34 SHLYAALCRKKIKTFIDDEE-LRRGDEISPALL---NAIQGSKISVVIFSQDYASSKWCLNELVEILE 97 (165)
Q Consensus 34 ~~L~~~L~~~gi~v~~d~~~-~~~G~~~~~~i~---~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~ 97 (165)
......|+..|+.|.---.. ...|.++.+-+. ..|..|+.+++ =|++-.|.-|.-|...|..
T Consensus 19 ~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~--l~gWe~S~GA~~E~~~A~~ 84 (92)
T PF14359_consen 19 NAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYM--LPGWENSRGARLEHELAKK 84 (92)
T ss_pred HHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEE--cCCcccCcchHHHHHHHHH
Confidence 45778889999877653322 356666655443 45667775444 4999999999999998854
No 17
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=83.23 E-value=3.9 Score=26.93 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
..++..|...|.+.|+++.+|.. +..+...+..|-..---+++|+.+
T Consensus 15 ~~~a~~l~~~L~~~gi~v~~d~~----~~~~~k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIRVELDDS----DKSLGKQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESS----SSTHHHHHHHHHHTTESEEEEEEH
T ss_pred HHHHHHHHHHHHHCCCEEEEECC----CCchhHHHHHHhhcCCeEEEEECc
Confidence 46789999999999999999974 445555666665544445555654
No 18
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=82.96 E-value=6.4 Score=25.53 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=40.8
Q ss_pred ecEEEecccC---CCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 17 YDVFLSFRGE---DTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 17 ~DVFISy~~~---D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
++|+|...+. . ....+..+...|++.|+.+-+|.. +..+...+..+-...-.+++++.++
T Consensus 2 ~~v~ii~~~~~~~~-~~~~a~~~~~~Lr~~g~~v~~~~~----~~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 2 IDVAIVPLTDPRVE-AREYAQKLLNALLANGIRVLYDDR----ERKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred eEEEEEECCCCcHH-HHHHHHHHHHHHHHCCCEEEecCC----CcCHhHHHHHHHhCCCCEEEEECCC
Confidence 5666665333 2 246788899999999999998763 3466666666655554577777763
No 19
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=81.90 E-value=2.3 Score=34.45 Aligned_cols=100 Identities=19% Similarity=0.365 Sum_probs=71.1
Q ss_pred CCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCC--CCCCcchHHHHHHHh--cCCeEEEEEecCCcCchhH
Q 031151 13 SSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEEL--RRGDEISPALLNAIQ--GSKISVVIFSQDYASSKWC 88 (165)
Q Consensus 13 ~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~--~~G~~~~~~i~~~I~--~S~~~I~vlS~~~~~S~wc 88 (165)
.+-++.+=+||.+.| ..+|+...+-|...|+.+|+|..+= ..|.++.+ +...|- ..-..+.++|.+|-...|.
T Consensus 3 ~~~~~~~a~~f~~~d--~~~~~~~~n~~~~~~v~~~y~~~~~a~~~~~~~~~-~~~e~~q~~~~~~~~f~~~~~~r~~~~ 79 (329)
T COG4916 3 RNVQFEIALSFAGED--REYVDRVANLLREAGVTVFYDIFEEANLWGKNLYD-YLSEIYQDKALFTIMFISEHYSRKMWT 79 (329)
T ss_pred cchheeeeeeecCch--HHHHHHHHHHHHhhccEEEEeehhhhhhhhhHHHH-HHHHHHhhhhHHHhhhhhccccCcCCC
Confidence 345677889999998 5799999999999999999975321 23333332 222222 2445678899999999999
Q ss_pred HHHHHHHHHHH-HhcCCceeeEEeecCC
Q 031151 89 LNELVEILECK-SKNGQIVVPVFHRVDP 115 (165)
Q Consensus 89 ~~El~~a~~~~-~~~~~~iiPV~~~v~p 115 (165)
..|++..+... .+....++|-+++..|
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 107 (329)
T COG4916 80 NHERQAMQARAFQEHQEYILPARFDETP 107 (329)
T ss_pred cHHHHHHHHHHhhhccEEehhhhhccCC
Confidence 99998877655 3455678888886543
No 20
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=75.39 E-value=2.8 Score=30.08 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCC---CCCCcchH
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEEL---RRGDEISP 62 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~---~~G~~~~~ 62 (165)
...+..|+..|++.|+++++|.++- .+|..+.+
T Consensus 43 ~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~ 78 (128)
T cd02426 43 RDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDK 78 (128)
T ss_pred HHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHh
Confidence 5678999999999999999998664 46665543
No 21
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=74.95 E-value=16 Score=25.42 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=43.2
Q ss_pred eecEEEeccc--CCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 16 KYDVFLSFRG--EDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 16 ~~DVFISy~~--~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
.+||||-.-+ .+ ....+..|...|++.|+++-+|.. ..+...+..|-+.--..++++.++-.
T Consensus 26 p~~v~Ii~~~~~~~-~~~~a~~la~~LR~~gi~v~~d~~-----~sl~kqlk~A~k~g~~~~iiiG~~e~ 89 (121)
T cd00858 26 PIKVAVLPLVKRDE-LVEIAKEISEELRELGFSVKYDDS-----GSIGRRYARQDEIGTPFCVTVDFDTL 89 (121)
T ss_pred CcEEEEEecCCcHH-HHHHHHHHHHHHHHCCCEEEEeCC-----CCHHHHHHHhHhcCCCEEEEECcCch
Confidence 5788887755 32 245778899999999999999863 35666666665555556777766543
No 22
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=73.69 E-value=23 Score=23.44 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=39.9
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCC---------CCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEEL---------RRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~---------~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
+|.|..+.--+-.++.+|...|.++|.++.+-+-|. .|+ +......++..|+..|+++.++..
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~~d~viiD~p~~--~~~~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQYDYIIIDTPPS--LGLLTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCEEEEeCcCC--CCHHHHHHHHHCCEEEEeccCCHH
Confidence 356665543345568999999998998877643332 232 233444677778877777776543
No 23
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=71.03 E-value=1.5 Score=32.92 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhcccCcHHHHHHHhHHhcCCChHHHHHHHHHHHHhh
Q 031151 85 SKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRKQNGSFRDAFVKHEKQFKRTPEKVQKWRVALTQAS 154 (165)
Q Consensus 85 S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~ 154 (165)
|.|.+.||..-++..+-+.=.=+.+.++|+|-++.+... .+++..+.-++++|+.|.+-=|
T Consensus 54 s~~~Lf~LI~k~~~keikTW~~La~~LGVepp~~ek~qS---------tQKvqQYaVRLKRWM~aMHVDA 114 (175)
T PF09441_consen 54 STFTLFELIRKLESKEIKTWAQLALELGVEPPDPEKGQS---------TQKVQQYAVRLKRWMRAMHVDA 114 (175)
T ss_pred hHHHHHHHHHHHhhhhHhHHHHHHHHhCCCCCCcccccc---------hHHHHHHHHHHHHHHHHhhHHH
Confidence 467777777666544322223455667888888764321 1233334578899999987433
No 24
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=67.51 E-value=18 Score=23.54 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
...+..|...|++.|+++.+|.+.- .+...+..+-..---+++++.++-.
T Consensus 17 ~~~a~~la~~Lr~~g~~v~~d~~~~----~l~k~i~~a~~~g~~~~iiiG~~e~ 66 (94)
T cd00861 17 QELAEKLYAELQAAGVDVLLDDRNE----RPGVKFADADLIGIPYRIVVGKKSA 66 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCC----CcccchhHHHhcCCCEEEEECCchh
Confidence 4578899999999999999987533 4444555554444446666665433
No 25
>COG0400 Predicted esterase [General function prediction only]
Probab=65.56 E-value=28 Score=27.05 Aligned_cols=58 Identities=21% Similarity=0.151 Sum_probs=44.0
Q ss_pred CCCCCceecEEEecccCCC--chhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHh
Q 031151 10 SSSSSCKYDVFLSFRGEDT--RDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQ 69 (165)
Q Consensus 10 ~~~~~~~~DVFISy~~~D~--~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~ 69 (165)
..+.....-|||+|-..|. -...+.+|.+.|+..|..|.... +..|-.+..+-.+++.
T Consensus 140 ~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~--~~~GH~i~~e~~~~~~ 199 (207)
T COG0400 140 LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRW--HEGGHEIPPEELEAAR 199 (207)
T ss_pred cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEE--ecCCCcCCHHHHHHHH
Confidence 3456778889999988884 35678999999999999999876 3477777665544443
No 26
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=65.04 E-value=66 Score=25.88 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHhcCCcEEE-eeCC--CCCCCCcchHHHHHHH-h-cCCeEEEEEecCCcCchhHHHHHHHHHHH-HHhcC
Q 031151 30 DNFTSHLYAALCRKKIKTF-IDDE--ELRRGDEISPALLNAI-Q-GSKISVVIFSQDYASSKWCLNELVEILEC-KSKNG 103 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~-~d~~--~~~~G~~~~~~i~~~I-~-~S~~~I~vlS~~~~~S~wc~~El~~a~~~-~~~~~ 103 (165)
.++|..|.+.|.+.|+.+- .|.. .+.-|--.. ..-+ . ..++=|+.+|.+...+.....+|..++.. .++.+
T Consensus 90 ~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vP---L~~l~~~~~~iPvV~~s~~~~~~~~~~~~lG~al~~~l~~~~ 166 (271)
T cd07373 90 TALAEACVTACPEHGVHARGVDYDGFPIDTGTITA---CTLMGIGTEALPLVVASNNLYHSGEITEKLGAIAADAAKDQN 166 (271)
T ss_pred HHHHHHHHHHHHHCCCcEEEecCCCCCCcchhHHH---HHHHcccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6799999999999999986 6663 244443322 2233 2 45666777888887777788899999885 45445
Q ss_pred CceeeEE
Q 031151 104 QIVVPVF 110 (165)
Q Consensus 104 ~~iiPV~ 110 (165)
.+|+-|-
T Consensus 167 ~rV~iIg 173 (271)
T cd07373 167 KRVAVVG 173 (271)
T ss_pred CeEEEEE
Confidence 6666543
No 27
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=61.12 E-value=31 Score=30.64 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=44.8
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
...||+|..-+++ ....+..|...|++.|++|-+|.. +.++...+..|-+.---.++|+.++
T Consensus 469 ~p~~v~vi~~~~~-~~~~a~~ia~~LR~~Gi~v~~d~~----~~sl~~q~k~A~~~g~~~~iiiG~~ 530 (563)
T TIGR00418 469 APVQVVVIPVNER-HLDYAKKVAQKLKKAGIRVDVDDR----NERLGKKIREAQKQKIPYMLVVGDK 530 (563)
T ss_pred CCceEEEEEccch-HHHHHHHHHHHHHHcCCEEEEECC----CCCHHHHHHHHHhcCCCEEEEEchh
Confidence 4578888775544 357889999999999999999863 4566667777755555566666653
No 28
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=59.94 E-value=40 Score=21.06 Aligned_cols=58 Identities=22% Similarity=0.162 Sum_probs=35.7
Q ss_pred cEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 18 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 18 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
||+|...+.. ...-+-.+...|.+.|+++.++... ..+...+..+-...-..++++.+
T Consensus 3 ~v~i~~~~~~-~~~~a~~i~~~Lr~~g~~v~~~~~~----~~~~~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEG-ALSEALELAEQLRDAGIKAEIDYGG----RKLKKQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChH-HHHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCCEEEEEcH
Confidence 6777654443 2345778899999999999887632 23444555554443345555554
No 29
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=59.43 E-value=82 Score=24.49 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=59.6
Q ss_pred EEEecccCCC--chhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhc--------------------------
Q 031151 19 VFLSFRGEDT--RDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQG-------------------------- 70 (165)
Q Consensus 19 VFISy~~~D~--~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~-------------------------- 70 (165)
.||.+-|-|- +.+.++.|.+.|+.+|+.|.+-. ...|.++...|.+.+.+
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr--EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i 81 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR--EPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVI 81 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe--CCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4888877663 35678999999999999887754 12233333333332221
Q ss_pred ---CCeEEEEEecCCcCchhHHH--------HHHHHHHHH-HhcCCceeeEEeecCCchh
Q 031151 71 ---SKISVVIFSQDYASSKWCLN--------ELVEILECK-SKNGQIVVPVFHRVDPSDI 118 (165)
Q Consensus 71 ---S~~~I~vlS~~~~~S~wc~~--------El~~a~~~~-~~~~~~iiPV~~~v~p~~v 118 (165)
-.-.-+|++..|.-|.-+.+ ++...+... ..+-.+=+-++++++|..-
T Consensus 82 ~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~a 141 (208)
T COG0125 82 KPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVA 141 (208)
T ss_pred HHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHH
Confidence 01124888999998887765 223322221 1122466778889998873
No 30
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.38 E-value=50 Score=22.01 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCCcEEEeeCCCCCCCCc-chHHHHHHHhcCCeEEEEEecCCcCchhHHH
Q 031151 31 NFTSHLYAALCRKKIKTFIDDEELRRGDE-ISPALLNAIQGSKISVVIFSQDYASSKWCLN 90 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi~v~~d~~~~~~G~~-~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~ 90 (165)
.....+...+++.|...-+. .-..|.. -...|...|.+++++|++..--.-...|...
T Consensus 10 ~~~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk 68 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHH--GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVK 68 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEE--ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHH
Confidence 35677888899999886665 1122222 2235888999999988887655555444443
No 31
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=57.04 E-value=54 Score=26.06 Aligned_cols=76 Identities=17% Similarity=0.079 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHhcCCcEEEeeC-CCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceee
Q 031151 30 DNFTSHLYAALCRKKIKTFIDD-EELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVP 108 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~-~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiP 108 (165)
.++|.+|.+.|.++|+.+-.+. +.+.-|--+. +.-...+.++=|+.+|.+...+.....+|..+++..++ .+|+-
T Consensus 80 ~eLa~~i~~~l~~~gi~~~~~~~~~lDHG~~vP--L~~~~p~~~iPvV~isi~~~~~~~~~~~lG~aL~~l~~--~~v~i 155 (253)
T cd07363 80 PELAERVAELLKAAGIPARLDPERGLDHGAWVP--LKLMYPDADIPVVQLSLPASLDPAEHYALGRALAPLRD--EGVLI 155 (253)
T ss_pred HHHHHHHHHHHHhcCCCccccCCcCCcccHHHH--HHHHcCCCCCcEEEEEecCCCCHHHHHHHHHHHHhhhh--CCEEE
Confidence 5799999999999999886543 3344443322 22233346777999999888778888899999976543 24443
Q ss_pred E
Q 031151 109 V 109 (165)
Q Consensus 109 V 109 (165)
|
T Consensus 156 i 156 (253)
T cd07363 156 I 156 (253)
T ss_pred E
Confidence 3
No 32
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=56.59 E-value=29 Score=27.97 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=64.9
Q ss_pred HHHHhcCCcEEEeeCC----CCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEe-
Q 031151 37 YAALCRKKIKTFIDDE----ELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFH- 111 (165)
Q Consensus 37 ~~~L~~~gi~v~~d~~----~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~- 111 (165)
+..|... +++|-|-. ....+.++.+....+++.+..=-+++|-.-...+=-+.++..+.+ .- . +|||.
T Consensus 134 R~~l~a~-v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~----~~-~-~PVlvG 206 (254)
T PF03437_consen 134 RKRLGAD-VKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVRE----AV-P-VPVLVG 206 (254)
T ss_pred HHHcCCC-eEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHh----cC-C-CCEEEe
Confidence 3444445 89998742 112345666666677777666666667665544444555554422 11 2 99999
Q ss_pred -ecCCchhhcccC----cH-HHHHHHhHHh-cCCChHHHHHHHHHHH
Q 031151 112 -RVDPSDIRKQNG----SF-RDAFVKHEKQ-FKRTPEKVQKWRVALT 151 (165)
Q Consensus 112 -~v~p~~v~~~~~----~f-~~~f~~~~~~-~~~~~~~~~~W~~al~ 151 (165)
+++++.+.++.. .. |-.|.+.... -+.|.++++++++++.
T Consensus 207 SGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 207 SGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred cCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence 488988876532 22 4455443331 1367899999998875
No 33
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=56.27 E-value=28 Score=25.08 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=41.6
Q ss_pred ecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeE
Q 031151 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKIS 74 (165)
Q Consensus 17 ~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~ 74 (165)
.++|+-..+.=....+.+.|..+++.+|+-++.|.+ .+|+.+...|.+.+.++..+
T Consensus 30 ~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~D--~~Ge~Irk~l~~~l~~~~~~ 85 (127)
T COG1658 30 AGVIITNGSAINSLETIELIKKAQKYKGVIILTDPD--RKGERIRKKLKEYLPGAKGA 85 (127)
T ss_pred CceEEEcCCccchHHHHHHHHHhhccCCEEEEeCCC--cchHHHHHHHHHHhcccccc
Confidence 456665544321246788999999999999999984 68999999998888885443
No 34
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=53.32 E-value=25 Score=30.42 Aligned_cols=65 Identities=20% Similarity=0.170 Sum_probs=42.2
Q ss_pred eecEEEeccc--CCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcC
Q 031151 16 KYDVFLSFRG--EDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 16 ~~DVFISy~~--~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
.++|+|---. .+.....+..|...|.+.|++|.+|.++-.+|. .+..+-..---.++|+.++-+.
T Consensus 345 P~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~----ki~~a~~~giP~~iiVG~~e~~ 411 (439)
T PRK12325 345 PFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGA----KFATMDLIGLPWQIIVGPKGLA 411 (439)
T ss_pred CeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhH----HHHHHHHcCCCEEEEECCcccc
Confidence 4688776542 222346789999999999999999986544444 4444433333466667665443
No 35
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=52.72 E-value=24 Score=31.61 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=42.4
Q ss_pred CceecEEEeccc-C-CCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 14 SCKYDVFLSFRG-E-DTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 14 ~~~~DVFISy~~-~-D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
-..++|+|---. . +.-...+..|+..|++.|+++.+|+++-.+|..+.+.- +.... .++++.++..
T Consensus 466 iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~~~~g~k~~~ad---~~GiP-~~iiiG~~e~ 533 (565)
T PRK09194 466 IAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVKFADAD---LIGIP-HRIVVGDRGL 533 (565)
T ss_pred cCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCCCCHHHHHHHHH---hcCCC-EEEEEcCccc
Confidence 345888887543 2 22246789999999999999999987655665544321 22233 5566666543
No 36
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=52.48 E-value=50 Score=28.36 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=42.4
Q ss_pred eecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 16 ~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
.++|+|-.-+++ ....+..|...|++.|+++.+|.. +..+...+..|-+.---.++++.++
T Consensus 274 P~qV~IIpl~ee-l~e~AlkLA~eLR~aGIrVeiDl~----srSLgKQiK~AdK~GaPfvIIIGed 334 (387)
T PRK14938 274 PIQVRILPVKKD-FLDFSIQVAERLRKEGIRVNVDDL----DDSLGNKIRRAGTEWIPFVIIIGER 334 (387)
T ss_pred cceEEEEEeChH-HHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHcCCCEEEEECch
Confidence 467777665554 346788999999999999999863 4566667777766554455555543
No 37
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=51.11 E-value=23 Score=24.44 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=21.7
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEe
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFI 49 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~ 49 (165)
||||.+..| +.-...+...|.+.|++++-
T Consensus 3 vlisv~~~d--k~~~~~~a~~l~~~G~~i~a 31 (116)
T cd01423 3 ILISIGSYS--KPELLPTAQKLSKLGYKLYA 31 (116)
T ss_pred EEEecCccc--chhHHHHHHHHHHCCCEEEE
Confidence 799998776 34445777888888888864
No 38
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=49.21 E-value=43 Score=25.50 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
......|..+.+.+|+-+|.|.+ .+|+.|...|.+.+-++... .++..+.
T Consensus 35 ~~~i~~i~~~~~~rgVIIfTDpD--~~GekIRk~i~~~vp~~kha--fi~~~~a 84 (174)
T TIGR00334 35 DETINLIKKAQKKQGVIILTDPD--FPGEKIRKKIEQHLPGYENC--FIPKHLA 84 (174)
T ss_pred HHHHHHHHHHhhcCCEEEEeCCC--CchHHHHHHHHHHCCCCeEE--eeeHHhc
Confidence 45678888889999999999985 69999999999988777654 3454444
No 39
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=49.16 E-value=93 Score=22.01 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhcCCcEE-EeeCCCC-CC-----------CCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHH
Q 031151 30 DNFTSHLYAALCRKKIKT-FIDDEEL-RR-----------GDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEIL 96 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v-~~d~~~~-~~-----------G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~ 96 (165)
..+++.+.+.|++.|+.+ .+|-.+. .| -..-.+++.+.+.+++ .|++.||.|..+.- -.+..++
T Consensus 17 ~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD-~iI~~sP~y~~~~s--~~lK~~l 93 (152)
T PF03358_consen 17 RKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEAD-GIIFASPVYNGSVS--GQLKNFL 93 (152)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSS-EEEEEEEEBTTBE---HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCC-eEEEeecEEcCcCC--hhhhHHH
Confidence 467899999998888765 3355444 11 1223457788899999 66778999987532 3444555
Q ss_pred HHHH-----h-cCCceeeEEee
Q 031151 97 ECKS-----K-NGQIVVPVFHR 112 (165)
Q Consensus 97 ~~~~-----~-~~~~iiPV~~~ 112 (165)
++.. . .+..+.+|-..
T Consensus 94 D~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 94 DRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp HTHHHTHTTTTTTSEEEEEEEE
T ss_pred HHhccccccccCCCEEEEEEEe
Confidence 5431 1 34456665443
No 40
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=49.08 E-value=63 Score=27.81 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=41.9
Q ss_pred eecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 16 ~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
..||+|.+-+.+ ....+-.+...|.++|+++-+|.. +..+...+..|-+..-..++|+.+
T Consensus 325 ~~~v~v~~~~~~-~~~~a~~ia~~LR~~Gi~veid~~----~~~l~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 325 SIDVYIATQGLK-AQKKGWEIIQFLEKQNIKFELDLS----SSNFHKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred CCCEEEEEcCHH-HHHHHHHHHHHHHhCCCeEEEeeC----CCCHHHHHHHHHHcCCCEEEEEec
Confidence 468999875443 245678899999999999988752 345666777776655456666665
No 41
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=48.32 E-value=79 Score=25.79 Aligned_cols=72 Identities=26% Similarity=0.220 Sum_probs=46.3
Q ss_pred HHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEe-----------------cCCcCchhHHHHHHHHHH
Q 031151 35 HLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS-----------------QDYASSKWCLNELVEILE 97 (165)
Q Consensus 35 ~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS-----------------~~~~~S~wc~~El~~a~~ 97 (165)
-+.-.|..+|++|-=-. +.|+.++..++.+ +...+++=+.++ .+|++-.-|..||..|-+
T Consensus 158 PlS~YLA~~G~KvAN~P--Lvpe~~lP~~L~~-~~~~kivGLtIdp~rL~~IR~~Rl~~lg~s~Ya~~~~i~~El~~A~~ 234 (269)
T PRK05339 158 PTSLYLANKGIKAANYP--LVPEVPLPEELFP-IDPKKIFGLTIDPERLIEIRKERLPNLGLSRYASLEQCREELAEAER 234 (269)
T ss_pred HHHHHHHccCCceEeeC--CCCCCCCCHHHHh-CCCCcEEEEeCCHHHHHHHHHHHhcccCcCcCCCHHHHHHHHHHHHH
Confidence 34556666888876433 5666666655543 444455555554 348888889999999988
Q ss_pred HHHhcCCceeeE
Q 031151 98 CKSKNGQIVVPV 109 (165)
Q Consensus 98 ~~~~~~~~iiPV 109 (165)
..+..+-++|=|
T Consensus 235 l~~k~~~pvIdv 246 (269)
T PRK05339 235 LFRREGIPVIDV 246 (269)
T ss_pred HHHHcCCCEEEC
Confidence 776655555433
No 42
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=47.54 E-value=26 Score=22.38 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=17.6
Q ss_pred CCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEE
Q 031151 43 KKIKTFIDDEELRRGDEISPALLNAIQGSKISVV 76 (165)
Q Consensus 43 ~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~ 76 (165)
+.+-+|+|.+ .+|......+.+.+..-...+-
T Consensus 44 ~~vii~~D~D--~aG~~a~~~~~~~l~~~g~~~~ 75 (79)
T cd03364 44 KEVILAFDGD--EAGQKAALRALELLLKLGLNVR 75 (79)
T ss_pred CeEEEEECCC--HHHHHHHHHHHHHHHHCCCeEE
Confidence 4566666653 4666555555555555444433
No 43
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=47.15 E-value=21 Score=24.34 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHHhcCCcEEEeeCCCCC----------CCCcchHHHHHHHhcCCeEEEEEe
Q 031151 26 EDTRDNFTSHLYAALCRKKIKTFIDDEELR----------RGDEISPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 26 ~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~----------~G~~~~~~i~~~I~~S~~~I~vlS 79 (165)
.|.|.+=+-.|.+.|.++|+.|.+.+--+. .|-...+.+.++++.++++|+.-.
T Consensus 12 ~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~ 75 (106)
T PF03720_consen 12 DDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD 75 (106)
T ss_dssp S--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS-
T ss_pred cccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec
Confidence 567888899999999999999877542221 122223355778888887666444
No 44
>PLN03194 putative disease resistance protein; Provisional
Probab=47.01 E-value=98 Score=23.87 Aligned_cols=65 Identities=12% Similarity=0.234 Sum_probs=46.6
Q ss_pred cCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEE
Q 031151 42 RKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVF 110 (165)
Q Consensus 42 ~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~ 110 (165)
...+.||+.-+.-.....+...|.+++++..+.+++-......+.--..+|..+++. ....|.||
T Consensus 24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIee----Sri~IvVf 88 (187)
T PLN03194 24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRN----CKVGVAVF 88 (187)
T ss_pred CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHh----CeEEEEEE
Confidence 457899998765545557888999999999888877655555555555577766643 45788887
No 45
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=46.89 E-value=28 Score=31.65 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=40.3
Q ss_pred eecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 16 ~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
.++|+|.--+++ ....+..|.+.|++.|++|.+|.++- .+...+.+|-..---.++|+.++
T Consensus 499 P~qV~IIpi~e~-~~~~A~eIa~~Lr~~GirV~lDdr~~----slgkKir~A~~~GiP~iIVIG~k 559 (613)
T PRK03991 499 PTQVRVIPVSER-HLDYAEEVADKLEAAGIRVDVDDRDE----SLGKKIRDAGKEWIPYVVVIGDK 559 (613)
T ss_pred CceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECCCC----CHHHHHHHHHHcCCCEEEEECcc
Confidence 468777654443 35789999999999999999998643 44445555543333355555544
No 46
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=46.82 E-value=66 Score=21.81 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=35.9
Q ss_pred cEEEecccCCCchhHHHHHHHHHhcCCcEEEeeC--------CCCC-----CCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 18 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDD--------EELR-----RGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 18 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~--------~~~~-----~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
.||+|.+..| +.-...+...|.+.|++++--. ..+. ....-..+|.+.|++-.+-++|-.|+
T Consensus 2 ~vl~s~~~~~--k~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~ 76 (110)
T cd01424 2 TVFISVADRD--KPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPS 76 (110)
T ss_pred eEEEEEEcCc--HhHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCC
Confidence 3789998776 3444467777777888876421 1110 00001246677777777766666554
No 47
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=46.26 E-value=62 Score=29.03 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=41.6
Q ss_pred eecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 16 ~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
..+|+|..-+++ ....|..|...|+++|++|-+|.+ +..+...+..|-..---.++|+.+
T Consensus 438 P~qV~Iipi~e~-~~~~A~~Ia~~LR~~GirVelD~~----~~~lgkkir~A~k~gip~viIIG~ 497 (545)
T PRK14799 438 SVQVRVLPITDE-VNEYAEKVLNDMRKRRIRAEIDYA----GETLSKRIKNAYDQGVPYILIVGK 497 (545)
T ss_pred CceEEEEEcCHH-HHHHHHHHHHHHHhCCCEEEEECC----CCCHHHHHHHHHHcCCCEEEEECh
Confidence 458887765443 356889999999999999999874 445666666665444445566654
No 48
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=46.20 E-value=87 Score=25.31 Aligned_cols=71 Identities=23% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEe-------------------cCCcCchhHHHHHHHHH
Q 031151 36 LYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS-------------------QDYASSKWCLNELVEIL 96 (165)
Q Consensus 36 L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS-------------------~~~~~S~wc~~El~~a~ 96 (165)
|.-.|..+|++|-=-. +.|+..+..+|.+ +...+++=+.++ .+|..-.-|.+||..|-
T Consensus 153 lS~YLA~~G~KvAN~P--Lvpe~~lP~~L~~-~~~~ki~GLtidp~~L~~IR~~Rl~~lg~~~s~Ya~~~~i~~El~~A~ 229 (255)
T PF03618_consen 153 LSMYLANKGYKVANVP--LVPEVPLPEELFE-VDPKKIFGLTIDPERLIEIRRERLKSLGLDDSSYADLERIEEELEYAE 229 (255)
T ss_pred hhHHHHhcCcceeecC--cCCCCCCCHHHHh-CCCCcEEEEECCHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHH
Confidence 4455666888876433 6677777766654 345555555555 46888888999999998
Q ss_pred HHHHhcCCceeeE
Q 031151 97 ECKSKNGQIVVPV 109 (165)
Q Consensus 97 ~~~~~~~~~iiPV 109 (165)
+..++.+-.+|=|
T Consensus 230 ~l~~~~~~pvIdv 242 (255)
T PF03618_consen 230 RLFRKLGCPVIDV 242 (255)
T ss_pred HHHHHcCCCEEEC
Confidence 8877666555543
No 49
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=46.16 E-value=1.1e+02 Score=22.15 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=37.2
Q ss_pred CCC-cchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhc
Q 031151 56 RGD-EISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRK 120 (165)
Q Consensus 56 ~G~-~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~ 120 (165)
+|. .+..-....+..++.+|+|++.+-..|--...++...+.... ...=+|+++-....|+.+
T Consensus 58 ~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~--~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 58 AGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR--LTEDIPLVLVGNKVDLES 121 (172)
T ss_pred CCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc--CCCCCCEEEEEEChhhhh
Confidence 553 333333466889999999999876666544444444443322 112367777666777643
No 50
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=45.97 E-value=24 Score=27.12 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=39.9
Q ss_pred ceecEEEecccCCC-----chhHHHHHHHHHhcCCcEEEeeCCCC-CCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 15 CKYDVFLSFRGEDT-----RDNFTSHLYAALCRKKIKTFIDDEEL-RRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 15 ~~~DVFISy~~~D~-----~~~fv~~L~~~L~~~gi~v~~d~~~~-~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
-.++|+|---.... -...+..|...|...|+++-+|.++- .+|..+.. +-..---+++++.|+
T Consensus 9 AP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~----ae~~GvP~~I~IG~~ 77 (202)
T cd00862 9 APIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFND----WELKGVPLRIEIGPR 77 (202)
T ss_pred cCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHH----HHhCCCCEEEEECcc
Confidence 34677766433220 24578999999999999999998765 67766543 322222355555555
No 51
>PLN02530 histidine-tRNA ligase
Probab=45.57 E-value=74 Score=27.95 Aligned_cols=61 Identities=13% Similarity=0.009 Sum_probs=43.5
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
...||+|.+-.++ ....+-.+...|.++|+++-+|..+ .++...+..|-+.--..|+++.+
T Consensus 400 ~~~dVlVi~~~~~-~~~~A~~ia~~LR~~Gi~vevd~~~----~~l~k~ik~A~k~g~~~iviiG~ 460 (487)
T PLN02530 400 HQVDDVVFALDED-LQGAAAGVASRLREKGRSVDLVLEP----KKLKWVFKHAERIGAKRLVLVGA 460 (487)
T ss_pred CCCcEEEEEcChH-HHHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCCEEEEEch
Confidence 4568999875554 2467888999999999999887532 45666777776655556666664
No 52
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=45.51 E-value=1.1e+02 Score=21.62 Aligned_cols=87 Identities=17% Similarity=0.275 Sum_probs=43.0
Q ss_pred CCCCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcC---CeEEEEEecCCcCchh
Q 031151 11 SSSSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGS---KISVVIFSQDYASSKW 87 (165)
Q Consensus 11 ~~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S---~~~I~vlS~~~~~S~w 87 (165)
......+|++|.|+....+ .....+ ....++.++. +.|.++.+.+.++++.. .-.|+++..+... -
T Consensus 5 ~~~~~~~~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~-----Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~--l 73 (122)
T PF09837_consen 5 LAQADGADVVLAYTPDGDH-AAFRQL---WLPSGFSFFP-----QQGGDLGERMANAFQQAARGYEPVVLIGSDCPD--L 73 (122)
T ss_dssp ---TSSSEEEEEE----TT-HHHHHH---HH-TTSEEEE-------SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT---
T ss_pred cccCCCcCEEEEEcCCccH-HHHhcc---ccCCCCEEee-----cCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCC--C
Confidence 3456679999999887643 333332 3445666664 45666766666666654 3367777766654 2
Q ss_pred HHHHHHHHHHHHHhcCCceee
Q 031151 88 CLNELVEILECKSKNGQIVVP 108 (165)
Q Consensus 88 c~~El~~a~~~~~~~~~~iiP 108 (165)
+...|..+.+..+....++-|
T Consensus 74 ~~~~l~~A~~~L~~~d~VlgP 94 (122)
T PF09837_consen 74 TPDDLEQAFEALQRHDVVLGP 94 (122)
T ss_dssp -HHHHHHHHHHTTT-SEEEEE
T ss_pred CHHHHHHHHHHhccCCEEEee
Confidence 345666666655444334445
No 53
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.28 E-value=1.3e+02 Score=22.67 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=46.1
Q ss_pred CCCCcchHHHHHHHhc-CCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEee--cCCchhhcccCcHHHHHHH
Q 031151 55 RRGDEISPALLNAIQG-SKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHR--VDPSDIRKQNGSFRDAFVK 131 (165)
Q Consensus 55 ~~G~~~~~~i~~~I~~-S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~--v~p~~v~~~~~~f~~~f~~ 131 (165)
..|+.-...|.+.--. ...+|+|..-....|--|+-|+..-++... +.+|+-|+.+ ++..+-|......|+.|.+
T Consensus 63 tagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~ya--n~kvlkilvgnk~d~~drrevp~qigeefs~ 140 (213)
T KOG0095|consen 63 TAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA--NNKVLKILVGNKIDLADRREVPQQIGEEFSE 140 (213)
T ss_pred ccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh--hcceEEEeeccccchhhhhhhhHHHHHHHHH
Confidence 3565555566655444 455677777777788888887766555432 4589999984 4444433333334566654
Q ss_pred h
Q 031151 132 H 132 (165)
Q Consensus 132 ~ 132 (165)
.
T Consensus 141 ~ 141 (213)
T KOG0095|consen 141 A 141 (213)
T ss_pred h
Confidence 3
No 54
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=44.27 E-value=70 Score=28.90 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=43.2
Q ss_pred eecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 16 ~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
..||+|-.-+.. ....|..|...|.++|++|-+|.+ +..+...+..|-..---.++|+.++
T Consensus 539 p~~v~Ii~~~~~-~~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~kki~~A~~~g~~~~iiiG~~ 599 (638)
T PRK00413 539 PVQVVVLPITDK-HADYAKEVAKKLKAAGIRVEVDLR----NEKIGYKIREAQLQKVPYMLVVGDK 599 (638)
T ss_pred cceEEEEEeChh-HHHHHHHHHHHHHhCCCEEEEECC----CCCHhHHHHHhhccCCCEEEEEcch
Confidence 458888765543 256789999999999999999874 4556666666655544566666653
No 55
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=44.06 E-value=40 Score=27.47 Aligned_cols=31 Identities=35% Similarity=0.564 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHH----hcCCceeeEEeecCCc
Q 031151 86 KWCLNELVEILECKS----KNGQIVVPVFHRVDPS 116 (165)
Q Consensus 86 ~wc~~El~~a~~~~~----~~~~~iiPV~~~v~p~ 116 (165)
.=|-+||.++....+ ..+..++|||.-++|.
T Consensus 153 DICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 153 DICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred CcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 348888887655432 3456777999998884
No 56
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=43.36 E-value=87 Score=27.46 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=39.7
Q ss_pred eecEEEeccc-----CCCchhHHHHHHHHHhcCCcEEEeeC-CCCCCCCcchHHHHHHHhcCCeEEEEEecCC
Q 031151 16 KYDVFLSFRG-----EDTRDNFTSHLYAALCRKKIKTFIDD-EELRRGDEISPALLNAIQGSKISVVIFSQDY 82 (165)
Q Consensus 16 ~~DVFISy~~-----~D~~~~fv~~L~~~L~~~gi~v~~d~-~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~ 82 (165)
.++|+|---. .+.-...+..|...|++.|++|-+|. .+-.+|.. +.++-..---+++++.++-
T Consensus 287 P~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK----~~~ae~~GvP~~IiIG~~e 355 (477)
T PRK08661 287 PIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWK----FNEWELKGVPLRIEIGPRD 355 (477)
T ss_pred CCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHH----HHHHHHCCCCEEEEECcch
Confidence 5778776431 11124578999999999999999998 44455554 4444333333556666553
No 57
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=43.08 E-value=91 Score=27.82 Aligned_cols=61 Identities=10% Similarity=0.188 Sum_probs=42.5
Q ss_pred eecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 16 ~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
.+||+|---+++ ....|..|...|.+.|++|-+|.++ ..+...+..|-..---.++|+.++
T Consensus 476 p~~v~Ii~~~~~-~~~~a~~i~~~Lr~~gi~v~~d~~~----~~l~kk~~~A~~~g~p~~iivG~~ 536 (575)
T PRK12305 476 PVQVVIIPVADA-HNEYAEEVAKKLRAAGIRVEVDTSN----ERLNKKIRNAQKQKIPYMLVVGDK 536 (575)
T ss_pred CccEEEEEeChH-HHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEEech
Confidence 468888765443 2467899999999999999998743 456666666655544456666553
No 58
>PHA00407 phage lambda Rz1-like protein
Probab=42.86 E-value=16 Score=23.95 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=18.9
Q ss_pred CChHHHHHHHHHHH-----HhhcccCcccc
Q 031151 138 RTPEKVQKWRVALT-----QASNLSGWDSR 162 (165)
Q Consensus 138 ~~~~~~~~W~~al~-----~v~~~~G~~~~ 162 (165)
..+.+.++|+.||- -|+.|+|+..+
T Consensus 23 stkktl~rwkaaLIGlllicv~tISGCaSe 52 (84)
T PHA00407 23 STKKTLRRWKAALIGLLLICVATISGCASE 52 (84)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 44788999999975 57788887553
No 59
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=42.02 E-value=1.1e+02 Score=23.28 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCCcEEEee------CCCCCCC---CcchHHHHHHHhcCCeEEEEEecCC-cCchhHHHHHHHHHHHHH
Q 031151 31 NFTSHLYAALCRKKIKTFID------DEELRRG---DEISPALLNAIQGSKISVVIFSQDY-ASSKWCLNELVEILECKS 100 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi~v~~d------~~~~~~G---~~~~~~i~~~I~~S~~~I~vlS~~~-~~S~wc~~El~~a~~~~~ 100 (165)
...+.|...|.+.|+.++.- ..+..|+ ..+...-.+.|.+|+++|+++.+-= ...+-...|+..+..
T Consensus 20 ~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~A--- 96 (172)
T COG3613 20 ELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIA--- 96 (172)
T ss_pred HHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHH---
Confidence 46678888999999998875 2222231 2344444577999999999998654 112235679998875
Q ss_pred hcCCceeeEEe
Q 031151 101 KNGQIVVPVFH 111 (165)
Q Consensus 101 ~~~~~iiPV~~ 111 (165)
.+..+++.+-
T Consensus 97 -lgKPv~~~~~ 106 (172)
T COG3613 97 -LGKPVYAYRK 106 (172)
T ss_pred -cCCceEEEee
Confidence 4568888764
No 60
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=41.81 E-value=73 Score=24.61 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=30.5
Q ss_pred EEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCch
Q 031151 46 KTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSK 86 (165)
Q Consensus 46 ~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~ 86 (165)
-||+|.- -+..+..++...+.+..+-|+++||.--.-+
T Consensus 126 ~VW~D~f---~~~~~~~~~~~~~~~~~~~~c~VSpELh~~~ 163 (192)
T cd08584 126 WVWIDSF---TSLWLDNDLILKLLKAGKKICLVSPELHGRD 163 (192)
T ss_pred EEEEecc---cccCCCHHHHHHHHHCCcEEEEECHHHcCCC
Confidence 4999973 4577788888888899999999999876544
No 61
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=41.65 E-value=20 Score=32.27 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
...+..|++.|+..|++|.+|+++-.+|..+.+.-. -.-- ..+++.++.+
T Consensus 489 ~~~a~~l~~~L~~~gi~v~~DDr~~~~G~K~~dadl---iGiP-~~i~vG~~~l 538 (568)
T TIGR00409 489 QQLAEELYSELLAQGVDVLLDDRNERAGVKFADSEL---IGIP-LRVVVGKKNL 538 (568)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHhhhh---cCCC-EEEEECCCcc
Confidence 468899999999999999999988777776654322 2222 3455565543
No 62
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=41.53 E-value=1.1e+02 Score=23.31 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCCcEE-EeeCCCCCCC--------CcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHH--
Q 031151 31 NFTSHLYAALCRKKIKT-FIDDEELRRG--------DEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECK-- 99 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi~v-~~d~~~~~~G--------~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~-- 99 (165)
..++.+.+.|.+.|..+ .+|-.++.++ .+-...+.+.|++++ .|++.||-|..|---. |..+++..
T Consensus 18 ~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD-~iIi~tP~Y~~s~pg~--LKn~iD~l~~ 94 (191)
T PRK10569 18 ALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQAD-GLIVATPVYKASFSGA--LKTLLDLLPE 94 (191)
T ss_pred HHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCC-EEEEECCccCCCCCHH--HHHHHHhCCh
Confidence 46677778888888876 4565555442 123346778888888 6677899998763322 22233221
Q ss_pred -HhcCCceeeEEeecCCc
Q 031151 100 -SKNGQIVVPVFHRVDPS 116 (165)
Q Consensus 100 -~~~~~~iiPV~~~v~p~ 116 (165)
.-.+..++||-....+.
T Consensus 95 ~~l~~K~v~iiat~G~~~ 112 (191)
T PRK10569 95 RALEHKVVLPLATGGSVA 112 (191)
T ss_pred hhhCCCEEEEEEecCCch
Confidence 12345777776654443
No 63
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=41.34 E-value=1.4e+02 Score=21.96 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=29.5
Q ss_pred CcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhh
Q 031151 58 DEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIR 119 (165)
Q Consensus 58 ~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~ 119 (165)
+.+.......+++++.+|+|++-.-..| ..++...++........-+||+. ....|+.
T Consensus 60 ~~~~~~~~~~~~~a~~iilv~D~t~~~s---~~~i~~~~~~~~~~~~~~~pilV-gnK~Dl~ 117 (182)
T cd04128 60 REFINMLPLVCNDAVAILFMFDLTRKST---LNSIKEWYRQARGFNKTAIPILV-GTKYDLF 117 (182)
T ss_pred hhHHHhhHHHCcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhCCCCCEEEE-EEchhcc
Confidence 3344334456788999999998543333 33333333222221122356655 3555553
No 64
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=41.22 E-value=78 Score=27.17 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=36.0
Q ss_pred hHHHHHHHhcCC-eEEEEEecCC-cCchhHHHHHHHHHHHHHhcCCcee
Q 031151 61 SPALLNAIQGSK-ISVVIFSQDY-ASSKWCLNELVEILECKSKNGQIVV 107 (165)
Q Consensus 61 ~~~i~~~I~~S~-~~I~vlS~~~-~~S~wc~~El~~a~~~~~~~~~~ii 107 (165)
.+.+.+++.+.+ .+.++++|+= ...-|..+||.++.+..++.+-+||
T Consensus 147 ~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VI 195 (388)
T COG1168 147 FDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVI 195 (388)
T ss_pred HHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEE
Confidence 357888999887 6777788875 4788999999999987665554554
No 65
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=40.03 E-value=1.5e+02 Score=24.02 Aligned_cols=63 Identities=5% Similarity=-0.017 Sum_probs=35.9
Q ss_pred cEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 18 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 18 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
.|.+-|...+-...++..+...|++.|+.|-... .+.+++.=...+...|.+++.-++++.-.
T Consensus 146 ~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~-~~~~~~~d~~~~i~~l~~~~~d~v~~~~~ 208 (347)
T cd06340 146 TVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDI-SYPANARDLTSEVLKLKAANPDAILPASY 208 (347)
T ss_pred eEEEEecCchHhHHHHHHHHHHHHHcCCEEEEee-ccCCCCcchHHHHHHHHhcCCCEEEEccc
Confidence 3555554333234567778888888898877543 35555433334455566655555555433
No 66
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=39.71 E-value=1.9e+02 Score=24.01 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=40.0
Q ss_pred cEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcC
Q 031151 18 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 18 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
-|+|-|+...-.+.+++.+...|+..|..+-.+. ...|++.-...+...|..+..-++++......
T Consensus 150 ~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~-~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~ 215 (366)
T COG0683 150 RVAIIGDDYAYGEGLADAFKAALKALGGEVVVEE-VYAPGDTDFSALVAKIKAAGPDAVLVGGYGPD 215 (366)
T ss_pred EEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEE-eeCCCCCChHHHHHHHHhcCCCEEEECCCCcc
Confidence 3555555444446788888888888888744333 45666543555666666665555555555444
No 67
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=39.36 E-value=1.6e+02 Score=23.49 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcC-C-cee
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNG-Q-IVV 107 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~-~-~ii 107 (165)
......|....+.+| ..++|- ++..+.....++...-.+-. +|+|-|...+.+..+|+...+..+...+ + .-|
T Consensus 78 ~~~i~ll~~la~~~~-~d~iDi-El~~~~~~~~~~~~~~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKi 152 (231)
T COG0710 78 EEYIELLKKLAELNG-PDYIDI-ELSSPEDDVKEIIKFAKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLGADIVKI 152 (231)
T ss_pred HHHHHHHHHHHhhcC-CCEEEE-EccCcchhHHHHHhccccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEE
Confidence 456666666666666 667776 34444332233333333333 8889999999999999999998875544 2 344
Q ss_pred eEE
Q 031151 108 PVF 110 (165)
Q Consensus 108 PV~ 110 (165)
++.
T Consensus 153 Avm 155 (231)
T COG0710 153 AVM 155 (231)
T ss_pred Eec
Confidence 444
No 68
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=38.82 E-value=1.1e+02 Score=20.89 Aligned_cols=29 Identities=7% Similarity=0.213 Sum_probs=20.7
Q ss_pred CCC-cchHHHHHHHhcCCeEEEEEecCCcC
Q 031151 56 RGD-EISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 56 ~G~-~~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
||. .+.......+++++.+|+|++..-..
T Consensus 57 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 86 (159)
T cd00154 57 AGQERFRSITPSYYRGAHGAILVYDITNRE 86 (159)
T ss_pred CChHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 554 34445667788999999999987543
No 69
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=38.41 E-value=1.3e+02 Score=20.95 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=24.7
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchH
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISP 62 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~ 62 (165)
||+|+|-.+ ..+ +.|....++.|+.+.+-. +.+| .+.+
T Consensus 2 iFvS~SMP~--~~L-~~l~~~a~~~~~~~V~RG--~~~g-~~~~ 39 (113)
T PF09673_consen 2 IFVSFSMPD--ASL-RNLLKQAERAGVVVVFRG--FPDG-SFKP 39 (113)
T ss_pred EEEECCCCH--HHH-HHHHHHHHhCCcEEEEEC--CCCC-CHHH
Confidence 799999887 334 445555555677776654 6676 5543
No 70
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=38.09 E-value=2.2e+02 Score=23.11 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhcCCcEEEe---eCCCCCCCCcchHHHHHHHhcCCeEEEEEecC-CcCchhHHHHHHHHHHHH-HhcCC
Q 031151 30 DNFTSHLYAALCRKKIKTFI---DDEELRRGDEISPALLNAIQGSKISVVIFSQD-YASSKWCLNELVEILECK-SKNGQ 104 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~---d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~-~~~S~wc~~El~~a~~~~-~~~~~ 104 (165)
.++|..|.+.+.+.|+.+-. ..+.+.-|--+. +.-.-.+.++-|+.+|.+ ...+..-..+|..++... ++.+.
T Consensus 96 ~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vP--L~~l~p~~~ipvV~is~~~~~~~~~~~~~lG~al~~~i~~~~~ 173 (282)
T TIGR02298 96 PALGQLIADEAQEHGVKTLAHQVPSLGLEYGTLVP--MRYMNEDGHFKVVSIAAWCTVHDIEESRALGEAIRKAIEQSDG 173 (282)
T ss_pred HHHHHHHHHHHHHCCCceeeccCCCCCCCeehHhH--HHHhCCCCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 57999999999999998752 233344444332 121223456778888877 444677778999888775 33456
Q ss_pred ceeeE
Q 031151 105 IVVPV 109 (165)
Q Consensus 105 ~iiPV 109 (165)
+|+-|
T Consensus 174 rV~iI 178 (282)
T TIGR02298 174 RVAVL 178 (282)
T ss_pred CEEEE
Confidence 66644
No 71
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=37.06 E-value=1.6e+02 Score=22.10 Aligned_cols=54 Identities=7% Similarity=0.102 Sum_probs=31.7
Q ss_pred HHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhc---CCceeeEEeecCCchhhc
Q 031151 64 LLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKN---GQIVVPVFHRVDPSDIRK 120 (165)
Q Consensus 64 i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~---~~~iiPV~~~v~p~~v~~ 120 (165)
...+++.++++|+|++.+- +...+++...++..... ...-+|+++-....|+..
T Consensus 74 ~~~~~~~ad~iilv~D~~~---~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 74 RFRGLRNSRAFILVYDICS---PDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred HHhhhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 4567899999999999763 44444444433332111 123467776556666643
No 72
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=35.71 E-value=1.4e+02 Score=21.43 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=24.4
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCC
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGD 58 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~ 58 (165)
||+|+|-.+ .-...|....++.|..+.+-. +..|+
T Consensus 3 vFvS~SMP~---~~Lk~l~~~a~~~g~~~VlRG--~~~~~ 37 (130)
T TIGR02742 3 VFVSFSMPE---PLLKQLLDQAEALGAPLVIRG--LLDNG 37 (130)
T ss_pred EEEEcCCCH---HHHHHHHHHHHHhCCeEEEeC--CCCCC
Confidence 799999887 344556666677888777654 66554
No 73
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=35.66 E-value=1.4e+02 Score=27.12 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=43.9
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
...+|+|-.-+++.....|..|...|++.|++|-+|.. +.++...+..|-+.---.++|+.++
T Consensus 540 ap~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~veid~~----~~sl~kq~k~A~k~g~~~~iiiG~~ 602 (639)
T PRK12444 540 APVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERDER----DEKLGYKIREAQMQKIPYVLVIGDK 602 (639)
T ss_pred CCceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHcCCCEEEEEcch
Confidence 45788777655411256889999999999999999864 4566667777755555566666653
No 74
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=35.41 E-value=1.5e+02 Score=20.41 Aligned_cols=54 Identities=9% Similarity=0.204 Sum_probs=33.4
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEe-eCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcC
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFI-DDEELRRGDEISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~-d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
||-|..+.- +.+|+.|.+.|...|+.+-+ +-.+.. ...+.+++ .|++.||.|..
T Consensus 4 iy~S~tGnT--~~~A~~i~~~~~~~g~~v~~~~~~~~~---------~~~l~~~d-~iilgspty~~ 58 (140)
T TIGR01753 4 VYASMTGNT--EEMANIIAEGLKEAGAEVDLLEVADAD---------AEDLLSYD-AVLLGCSTWGD 58 (140)
T ss_pred EEECCCcHH--HHHHHHHHHHHHhcCCeEEEEEcccCC---------HHHHhcCC-EEEEEcCCCCC
Confidence 345554442 67999999999998887644 322211 11234455 67888888864
No 75
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=35.02 E-value=1.1e+02 Score=20.97 Aligned_cols=61 Identities=26% Similarity=0.305 Sum_probs=36.3
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEeeC--------CCC-----CCCCc-chHHHHHHHhc-CCeEEEEEecC
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDD--------EEL-----RRGDE-ISPALLNAIQG-SKISVVIFSQD 81 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~--------~~~-----~~G~~-~~~~i~~~I~~-S~~~I~vlS~~ 81 (165)
||||-+..| +.-...+...|.+.|+.++--. ..+ ..+.. -.+++.+.|.+ -.+-++|..|+
T Consensus 2 i~isv~d~~--K~~~~~~a~~l~~~G~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 2 VFLSVSDHV--KAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred EEEEEEccc--HHHHHHHHHHHHHCCCEEEECcHHHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 688877666 3344466677777787775321 111 11100 12467888888 88888877775
No 76
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=34.78 E-value=1.3e+02 Score=20.94 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=4.2
Q ss_pred ecEEEecccC
Q 031151 17 YDVFLSFRGE 26 (165)
Q Consensus 17 ~DVFISy~~~ 26 (165)
.||-|=|+..
T Consensus 68 ~DVvIDfT~p 77 (124)
T PF01113_consen 68 ADVVIDFTNP 77 (124)
T ss_dssp -SEEEEES-H
T ss_pred CCEEEEcCCh
Confidence 5555555533
No 77
>PLN00023 GTP-binding protein; Provisional
Probab=34.01 E-value=1.5e+02 Score=25.00 Aligned_cols=29 Identities=7% Similarity=-0.096 Sum_probs=17.6
Q ss_pred CCCcchHHH-HHHHhcCCeEEEEEecCCcC
Q 031151 56 RGDEISPAL-LNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 56 ~G~~~~~~i-~~~I~~S~~~I~vlS~~~~~ 84 (165)
+|..-...+ ..-+++++.+|+|++-.-..
T Consensus 91 AGqErfrsL~~~yyr~AdgiILVyDITdr~ 120 (334)
T PLN00023 91 SGHERYKDCRSLFYSQINGVIFVHDLSQRR 120 (334)
T ss_pred CCChhhhhhhHHhccCCCEEEEEEeCCCHH
Confidence 454333333 34577899999998854433
No 78
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=33.26 E-value=2e+02 Score=22.16 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=39.9
Q ss_pred CCchhHHHHHHHHHhc---CCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHH
Q 031151 27 DTRDNFTSHLYAALCR---KKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILEC 98 (165)
Q Consensus 27 D~~~~fv~~L~~~L~~---~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~ 98 (165)
|.++.|...|..++.+ .|++|-.+. -.-..+++|-|.+-..-.|. +|.....+.
T Consensus 128 Dp~~~l~~~v~da~~RI~PEGFRVr~~~-----------------~~~~~f~~vASE~~i~~ewi-~~a~e~~~e 184 (188)
T PF09886_consen 128 DPSEDLKKKVYDAMFRIAPEGFRVRRHY-----------------YEGNSFAFVASEETIKDEWI-EEAKEMIEE 184 (188)
T ss_pred CcHHHHHHHHHHHHHHhCCCccEEeecc-----------------ccCCeEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5567899999999987 599887654 12234889999999999997 555554443
No 79
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=33.12 E-value=2.7e+02 Score=22.69 Aligned_cols=128 Identities=12% Similarity=0.152 Sum_probs=72.6
Q ss_pred cccCCCchhHHHHHHHHHhcCCcEEEee------CCCCCCCCcchHHHHHHHh-------cCCeEE----EEEecCCcCc
Q 031151 23 FRGEDTRDNFTSHLYAALCRKKIKTFID------DEELRRGDEISPALLNAIQ-------GSKISV----VIFSQDYASS 85 (165)
Q Consensus 23 y~~~D~~~~fv~~L~~~L~~~gi~v~~d------~~~~~~G~~~~~~i~~~I~-------~S~~~I----~vlS~~~~~S 85 (165)
|-.++. ..|..+| ..|++.|++.++. ..+++|+-+=.+++.+.+. .-++.. +++|..|.-
T Consensus 53 FWTKnp-~P~l~~L-~~l~~~gy~~yfq~Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~iG~~rViWRYDPIil~~~~~~- 129 (266)
T PF08902_consen 53 FWTKNP-APFLPYL-DELDERGYPYYFQFTITGYGKDLEPNVPPKDERIETFRELSERIGPERVIWRYDPIILTDKYTV- 129 (266)
T ss_pred EecCCc-HHHHhhH-HHHHhCCCceEEEEEeCCCCccccCCCCCHHHHHHHHHHHHHHHCCCcEEEecCCEeECCCCCH-
Confidence 334443 4677776 6788889988774 5578888655444444433 233321 456666544
Q ss_pred hhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhcccCcHHHHHHHhHH-hcCCChHHHHHHHHHHHHhhcccCccc
Q 031151 86 KWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRKQNGSFRDAFVKHEK-QFKRTPEKVQKWRVALTQASNLSGWDS 161 (165)
Q Consensus 86 ~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~f~~~f~~~~~-~~~~~~~~~~~W~~al~~v~~~~G~~~ 161 (165)
.|-++.+..+.+.......+++-=|++..+..-++.. ...- ...-+++...+--..|.+++.-.|..+
T Consensus 130 ~~h~~~F~~la~~L~g~t~~~viSF~D~Y~k~~~~l~--------~~~~~~~~~~~~~~~~l~~~l~~ia~~~g~~l 198 (266)
T PF08902_consen 130 DYHLEAFERLAEALAGYTDRCVISFLDLYRKVRRNLA--------RLGFRIREPSEEEKRELAKRLAEIAKKYGMTL 198 (266)
T ss_pred HHHHHHHHHHHHHHhccCCEEEEEeeeccHHHHHHHH--------hhcCCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 5666666666665555556777667665444322221 1110 112235666666777777777777544
No 80
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=33.09 E-value=68 Score=25.92 Aligned_cols=43 Identities=23% Similarity=0.146 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCcEEEeeCCCCCCCCcc---hHHHHHHHhcCCeEEEEEe
Q 031151 32 FTSHLYAALCRKKIKTFIDDEELRRGDEI---SPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 32 fv~~L~~~L~~~gi~v~~d~~~~~~G~~~---~~~i~~~I~~S~~~I~vlS 79 (165)
=+.+|.+.|...|+.+..-. ..||+. .+.+..++++++ ++|+|
T Consensus 22 Na~~la~~L~~~G~~v~~~~---~VgD~~~~I~~~l~~a~~r~D--~vI~t 67 (255)
T COG1058 22 NAAFLADELTELGVDLARIT---TVGDNPDRIVEALREASERAD--VVITT 67 (255)
T ss_pred hHHHHHHHHHhcCceEEEEE---ecCCCHHHHHHHHHHHHhCCC--EEEEC
Confidence 36789999999999998754 466654 344455555544 44445
No 81
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=33.09 E-value=1.6e+02 Score=20.91 Aligned_cols=46 Identities=2% Similarity=0.038 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEE
Q 031151 62 PALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVF 110 (165)
Q Consensus 62 ~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~ 110 (165)
..+.+.+.+++++|+|++.+-. |...+.....+..+....+.|-|+
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~~---~~~~~~~~l~~~~~~~~~~~i~V~ 165 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQD---LTESDMEFLKQMLDPDKSRTIFVL 165 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTST---GGGHHHHHHHHHHTTTCSSEEEEE
T ss_pred HHHHHhhccCCEEEEEeccCcc---cchHHHHHHHHHhcCCCCeEEEEE
Confidence 4567888999999999977763 344455555554444455555554
No 82
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=32.52 E-value=1.3e+02 Score=25.22 Aligned_cols=60 Identities=25% Similarity=0.409 Sum_probs=38.7
Q ss_pred eecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHh-cCCeEEEEEecCCcC
Q 031151 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIFSQDYAS 84 (165)
Q Consensus 16 ~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~-~S~~~I~vlS~~~~~ 84 (165)
-||+-|.|+.+| |+..|.++-- .||.+++|. .|..+.+.....+. ..|+.++=.=..|..
T Consensus 196 GfD~~idyk~~d----~~~~L~~a~P-~GIDvyfeN----VGg~v~DAv~~~ln~~aRi~~CG~IS~YN~ 256 (340)
T COG2130 196 GFDAGIDYKAED----FAQALKEACP-KGIDVYFEN----VGGEVLDAVLPLLNLFARIPVCGAISQYNA 256 (340)
T ss_pred CCceeeecCccc----HHHHHHHHCC-CCeEEEEEc----CCchHHHHHHHhhccccceeeeeehhhcCC
Confidence 589999997664 6666654433 699999986 45555656555555 456555544455554
No 83
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=31.97 E-value=44 Score=24.06 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=17.8
Q ss_pred hHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHH
Q 031151 61 SPALLNAIQGSKISVVIFSQDYASSKWCLNELVEI 95 (165)
Q Consensus 61 ~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a 95 (165)
...+.++|..-...|++.+..|-++ |+.||+.+
T Consensus 61 ~~~L~~~i~~~~g~ivvyN~sfE~~--rL~ela~~ 93 (130)
T PF11074_consen 61 IEALIKAIGSIYGSIVVYNKSFEKT--RLKELAEL 93 (130)
T ss_pred HHHHHHHhhhhcCeEEEechHHHHH--HHHHHHHH
Confidence 3344444444435666666655544 66666655
No 84
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=31.67 E-value=96 Score=22.37 Aligned_cols=22 Identities=41% Similarity=0.298 Sum_probs=8.8
Q ss_pred cchHHHHHHHhcCCeEEEEEec
Q 031151 59 EISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 59 ~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
.+.+.+.+.|.+++..|.+.++
T Consensus 21 ~~~~~i~~~I~~A~~~I~i~~~ 42 (176)
T cd00138 21 SDLDALLEAISNAKKSIYIASF 42 (176)
T ss_pred hHHHHHHHHHHhhheEEEEEEe
Confidence 3333344444444444444443
No 85
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=31.50 E-value=2.6e+02 Score=22.09 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=30.1
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCC-CcchHHHHHHHhcCCe
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRG-DEISPALLNAIQGSKI 73 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G-~~~~~~i~~~I~~S~~ 73 (165)
|.+-|...+-....+..+...|++.|+++-... .+.+| ..+. .+...|+++..
T Consensus 138 v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~d~~-~~l~~i~~~~~ 191 (334)
T cd06342 138 VAIIDDKTAYGQGLADEFKKALKAAGGKVVARE-GTTDGATDFS-AILTKIKAANP 191 (334)
T ss_pred EEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEe-cCCCCCccHH-HHHHHHHhcCC
Confidence 444454433334567788888888888776544 35555 3444 44445555433
No 86
>PLN02908 threonyl-tRNA synthetase
Probab=31.27 E-value=1.4e+02 Score=27.51 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=43.0
Q ss_pred eecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 16 ~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
..+|+|..-+.+ ....|..+...|+++|++|-+|. .+..+...+..|-..--..++|+.+
T Consensus 589 p~qv~Vipv~~~-~~~~A~~va~~LR~~Gi~vevd~----~~~~l~kkir~A~~~g~~~viivG~ 648 (686)
T PLN02908 589 PRQAIVVPISEK-SQDYAEEVRAQLHAAGFYVDVDV----TDRKIQKKVREAQLAQYNYILVVGE 648 (686)
T ss_pred CceEEEEEECHH-HHHHHHHHHHHHHHCCCEEEEEC----CCCCHHHHHHHHHHcCCCEEEEECc
Confidence 358877765543 25688999999999999999985 3556777777775555556666654
No 87
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=31.07 E-value=2.6e+02 Score=22.61 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhcCCcEEEe
Q 031151 30 DNFTSHLYAALCRKKIKTFI 49 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~ 49 (165)
+..+..+...|++.|+.+-.
T Consensus 152 ~~~~~~~~~~~~~~G~~v~~ 171 (347)
T cd06335 152 RSNRKDLTAALAARGLKPVA 171 (347)
T ss_pred hhHHHHHHHHHHHcCCeeEE
Confidence 45666666777777776543
No 88
>PLN02734 glycyl-tRNA synthetase
Probab=30.92 E-value=60 Score=30.06 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=40.7
Q ss_pred CCCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEe
Q 031151 12 SSSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 12 ~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS 79 (165)
..+.+..|+.--.+++ ....+..|...|.+.|+++-+|.++- .+...+..+-+.---.++++.
T Consensus 568 IAP~qVaIlPL~~~ee-~~~~A~eLa~~LR~~GIrVelDd~~~----SIGKRyrrADeiGIPf~ItIG 630 (684)
T PLN02734 568 VAPIKCTVFPLVQNQQ-LNAVAKVISKELTAAGISHKIDITGT----SIGKRYARTDELGVPFAVTVD 630 (684)
T ss_pred cCCcEEEEEEecCChH-HHHHHHHHHHHHHhCCCEEEEECCCC----CHhHHHHHHHHcCCCEEEEEC
Confidence 4667788876543332 35789999999999999999997543 444445444433333444444
No 89
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=30.64 E-value=2e+02 Score=20.40 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=19.1
Q ss_pred CC-CcchHHHHHHHhcCCeEEEEEecCCcC
Q 031151 56 RG-DEISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 56 ~G-~~~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
+| +.+.......+++++.+|++++-+-..
T Consensus 60 ~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~ 89 (167)
T cd01867 60 AGQERFRTITTAYYRGAMGIILVYDITDEK 89 (167)
T ss_pred CchHHHHHHHHHHhCCCCEEEEEEECcCHH
Confidence 44 333444446678999999999865433
No 90
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=30.62 E-value=52 Score=20.17 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhcCCcEEEeeCCC
Q 031151 31 NFTSHLYAALCRKKIKTFIDDEE 53 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi~v~~d~~~ 53 (165)
--|..+...|+++||.+++....
T Consensus 10 ~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 10 IEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp HHHHHHHHHHHHTT--EE--S--
T ss_pred HHHHHHHHHHHhCCCcEEEECCc
Confidence 45789999999999999997643
No 91
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=30.61 E-value=1.9e+02 Score=20.27 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=10.6
Q ss_pred HHHHHHhcCCeEEEEEecC
Q 031151 63 ALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 63 ~i~~~I~~S~~~I~vlS~~ 81 (165)
++.++|++++++++|+...
T Consensus 4 ~~~~~i~~aD~vl~ViD~~ 22 (141)
T cd01857 4 QLWRVVERSDIVVQIVDAR 22 (141)
T ss_pred HHHHHHhhCCEEEEEEEcc
Confidence 4455566666665555543
No 92
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=30.40 E-value=2.3e+02 Score=21.03 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=52.7
Q ss_pred CCCCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHH
Q 031151 11 SSSSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLN 90 (165)
Q Consensus 11 ~~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~ 90 (165)
.+...+.|...+.+-. + ==+..|.+.-++.|+++++ .+|..+...+.+..+ -+..|.|- |..
T Consensus 56 C~~k~t~~g~~C~~Cg--~-C~Ig~l~~lae~~g~~v~i-----~~Ggt~ar~~ik~~~-p~~iigVA---------C~~ 117 (158)
T PF01976_consen 56 CPAKITSDGYNCKRCG--K-CDIGDLKKLAEKYGYKVYI-----ATGGTLARKIIKEYR-PKAIIGVA---------CER 117 (158)
T ss_pred CCCccCCCCCcCCCCC--C-CchhHHHHHHHHcCCEEEE-----EcChHHHHHHHHHhC-CCEEEEEe---------chH
Confidence 4555556666665322 1 1256777777889999995 456665554443333 22444443 999
Q ss_pred HHHHHHHHHHhcCCceeeEEee
Q 031151 91 ELVEILECKSKNGQIVVPVFHR 112 (165)
Q Consensus 91 El~~a~~~~~~~~~~iiPV~~~ 112 (165)
+|...++.....+..++-|+.+
T Consensus 118 dL~~g~~~~~~~~ip~~gV~l~ 139 (158)
T PF01976_consen 118 DLISGIQDLKPLGIPVQGVLLD 139 (158)
T ss_pred HHHHHHHHHhhcCCCeeEEEeC
Confidence 9999887766566777777764
No 93
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=29.91 E-value=2e+02 Score=20.32 Aligned_cols=62 Identities=6% Similarity=0.028 Sum_probs=33.1
Q ss_pred CCC-cchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhc
Q 031151 56 RGD-EISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRK 120 (165)
Q Consensus 56 ~G~-~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~ 120 (165)
+|. .........+..++.+++|++-+...| .+++...++........-+|+++=....|+.+
T Consensus 57 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---f~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 57 AGQERYQTITKQYYRRAQGIFLVYDISSERS---YQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred CCcHhHHhhHHHHhcCCcEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 453 333344556788999999998665443 34444444332222222355555445556543
No 94
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=29.91 E-value=1.6e+02 Score=25.73 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=41.0
Q ss_pred ceecEEEec---ccC--CCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCC
Q 031151 15 CKYDVFLSF---RGE--DTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDY 82 (165)
Q Consensus 15 ~~~DVFISy---~~~--D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~ 82 (165)
..++|+|-- ... +.-...+..|...|++.|++|-+|.++-.+|. .+..+-..---.++++.++-
T Consensus 281 aP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~s~gk----k~k~Ae~~GvP~~IiIG~~E 349 (472)
T TIGR00408 281 APIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGR----KFYQWEIKGIPLRIEVGPND 349 (472)
T ss_pred CcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH----HHHHHHHCCCCEEEEECcch
Confidence 347887764 221 11246789999999999999999986534444 45555444444666666653
No 95
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=29.21 E-value=1.8e+02 Score=19.49 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCcEEE-eeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEe
Q 031151 33 TSHLYAALCRKKIKTF-IDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFH 111 (165)
Q Consensus 33 v~~L~~~L~~~gi~v~-~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~ 111 (165)
...|...|++.|+.+- +|. +.. .+++.+.+.+.+.-++.+|-.+... ..++..+.+..++.... +||..
T Consensus 17 l~~la~~l~~~G~~v~~~d~-~~~-----~~~l~~~~~~~~pd~V~iS~~~~~~---~~~~~~l~~~~k~~~p~-~~iv~ 86 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDA-NVP-----PEELVEALRAERPDVVGISVSMTPN---LPEAKRLARAIKERNPN-IPIVV 86 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEES-SB------HHHHHHHHHHTTCSEEEEEESSSTH---HHHHHHHHHHHHTTCTT-SEEEE
T ss_pred HHHHHHHHHHCCCeEEEECC-CCC-----HHHHHHHHhcCCCcEEEEEccCcCc---HHHHHHHHHHHHhcCCC-CEEEE
Confidence 4678899999999984 444 222 1677888888777777777654443 33444444433333333 44444
No 96
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=29.10 E-value=3.1e+02 Score=22.09 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=28.4
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCC---CcchHHHHHHHhcC
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRG---DEISPALLNAIQGS 71 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G---~~~~~~i~~~I~~S 71 (165)
|.+-|...+-...++..+...|++.|+.+-... .+.+| ..+... ...|..+
T Consensus 138 v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~d~~~~-l~~i~~~ 191 (350)
T cd06366 138 VATIYEDDDYGSGGLPDLVDALQEAGIEISYRA-AFPPSANDDDITDA-LKKLKEK 191 (350)
T ss_pred EEEEEEcCcccchhHHHHHHHHHHcCCEEEEEe-ccCCCCChhHHHHH-HHHHhcC
Confidence 444444333234567788888888888776554 35555 234433 3445443
No 97
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=29.09 E-value=2e+02 Score=22.48 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHH
Q 031151 32 FTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECK 99 (165)
Q Consensus 32 fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~ 99 (165)
.+.+|.+.=++.|+++| +.||..+...|.+. ......+.|- |..||...++..
T Consensus 121 vi~ei~e~ae~~gykvf-----IvpGgs~vkkIlKe-~k~e~vlgVA---------C~~eL~~~m~~l 173 (209)
T COG1852 121 VIGEIKEIAEKYGYKVF-----IVPGGSFVKKILKE-EKPEAVLGVA---------CYRELNEGMEAL 173 (209)
T ss_pred ehHHHHHHHHHhCcEEE-----EecChHHHHHHHhh-cCCceEEEEe---------ehHHHHHHHHHh
Confidence 35677788889999988 57898888888876 6666666655 999999988764
No 98
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=29.05 E-value=1.1e+02 Score=21.30 Aligned_cols=45 Identities=7% Similarity=0.153 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhcCCcEEEe-eCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 30 DNFTSHLYAALCRKKIKTFI-DDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~-d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
+.+|+.|.+.|+++|+.+-+ +-.+.. .. ...+...+.+|++.|.-
T Consensus 11 e~~A~~ia~~l~~~g~~~~~~~~~~~~------~~-~~~~~~~~~~i~~~sT~ 56 (143)
T PF00258_consen 11 EKMAEAIAEGLRERGVEVRVVDLDDFD------DS-PSDLSEYDLLIFGVSTY 56 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEGGGSC------HH-HHHHCTTSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCceeeechhhhh------hh-hhhhhhhceeeEeeccc
Confidence 57999999999999986433 332221 11 44566777666666633
No 99
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=28.93 E-value=68 Score=21.33 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEe
Q 031151 65 LNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFH 111 (165)
Q Consensus 65 ~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~ 111 (165)
...+..++.+|+|++..-..|-.-..++..-+...+..... +||++
T Consensus 68 ~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~-~piil 113 (119)
T PF08477_consen 68 QFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKN-IPIIL 113 (119)
T ss_dssp HHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSC-SEEEE
T ss_pred cchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCC-CCEEE
Confidence 34589999999999866444333333333333333222223 77665
No 100
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=28.80 E-value=2e+02 Score=21.11 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcCCcEE-EeeCCCCCC-----C---CcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHH--
Q 031151 31 NFTSHLYAALCRKKIKT-FIDDEELRR-----G---DEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECK-- 99 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi~v-~~d~~~~~~-----G---~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~-- 99 (165)
..++.+.+.|++.|..+ .+|-.++.. + ..-...+.+.|.+++ .|++.||.|..|.-- -|..+++..
T Consensus 17 ~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD-~iI~~sP~Y~~sip~--~LK~~iD~~~~ 93 (171)
T TIGR03567 17 ALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQAD-GVVVATPVYKASYSG--VLKALLDLLPQ 93 (171)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCC-EEEEECCcccCCCCH--HHHHHHHhCCh
Confidence 46677777787777643 344333321 1 122356777888888 566789999866322 233333332
Q ss_pred -HhcCCceeeEEee
Q 031151 100 -SKNGQIVVPVFHR 112 (165)
Q Consensus 100 -~~~~~~iiPV~~~ 112 (165)
.-.+..+.++...
T Consensus 94 ~~l~~K~v~~~~~g 107 (171)
T TIGR03567 94 RALRGKVVLPIATG 107 (171)
T ss_pred hhhCCCEEEEEEcC
Confidence 1124456665543
No 101
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.68 E-value=53 Score=22.20 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=14.0
Q ss_pred CChHHHHHHHHHHHHhh
Q 031151 138 RTPEKVQKWRVALTQAS 154 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~ 154 (165)
.+++..++|..||..|+
T Consensus 86 ~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 86 ESPEEREEWIHAIQTVA 102 (102)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 45788999999998774
No 102
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=28.64 E-value=82 Score=20.29 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=26.5
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEee
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFID 50 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d 50 (165)
.+--|+|+|--.+. ...-.+|.+.|.++|+.|+.-
T Consensus 15 ~k~~v~i~HG~~eh-~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEH-SGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHH-HHHHHHHHHHHHhCCCEEEEE
Confidence 46778999966553 334568899999999999874
No 103
>PRK05569 flavodoxin; Provisional
Probab=28.59 E-value=2.1e+02 Score=19.97 Aligned_cols=56 Identities=9% Similarity=0.173 Sum_probs=33.0
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCc
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASS 85 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S 85 (165)
+|-|-.+. + +..|+.|.+.|++.|+.+-+.. +..-+ ...+.+++ .|++-||.|...
T Consensus 7 iY~S~tGn-T-~~iA~~i~~~~~~~g~~v~~~~--~~~~~------~~~~~~~d-~iilgsPty~~~ 62 (141)
T PRK05569 7 IYWSCGGN-V-EVLANTIADGAKEAGAEVTIKH--VADAK------VEDVLEAD-AVAFGSPSMDNN 62 (141)
T ss_pred EEECCCCH-H-HHHHHHHHHHHHhCCCeEEEEE--CCcCC------HHHHhhCC-EEEEECCCcCCC
Confidence 34444333 2 5788999999988887654322 21111 12345555 567778888765
No 104
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=28.36 E-value=39 Score=21.61 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=19.8
Q ss_pred HHHhc--CCcEEEeeCCCCCCCCcchHHHHHHHhcCC
Q 031151 38 AALCR--KKIKTFIDDEELRRGDEISPALLNAIQGSK 72 (165)
Q Consensus 38 ~~L~~--~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~ 72 (165)
..|.. +.+-+|+|.+ .+|+.....+.+.+....
T Consensus 40 ~~~~~~~~~Vii~~D~D--~~G~~~a~~i~~~l~~~g 74 (81)
T PF13662_consen 40 EKLEKKVKEVIIAFDND--KAGEKAAQKIAKKLLPLG 74 (81)
T ss_dssp HHHH---SEEEEEEESS--HHHHHHHHHHHHHHG---
T ss_pred HhhhccCceEEEEeCcC--HHHHHHHHHHHHHHHhhc
Confidence 44444 6677788874 478777777777665433
No 105
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=27.91 E-value=1.2e+02 Score=25.85 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHHHHhcCCcEEEeeCCCCCC----CCcchHHHHHHHhcCCeEEE
Q 031151 26 EDTRDNFTSHLYAALCRKKIKTFIDDEELRR----GDEISPALLNAIQGSKISVV 76 (165)
Q Consensus 26 ~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~----G~~~~~~i~~~I~~S~~~I~ 76 (165)
.|.|++=+-.|.+.|.++|..|...+--+.. |-.+.+++.++++.++.+|+
T Consensus 311 ~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (388)
T PRK15057 311 DNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIIS 365 (388)
T ss_pred CccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEE
Confidence 4678888889999999999887664322222 44566777788888887665
No 106
>PRK07933 thymidylate kinase; Validated
Probab=27.32 E-value=1.8e+02 Score=22.37 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=23.4
Q ss_pred EEecccCCC--chhHHHHHHHHHhcCCcEEEe
Q 031151 20 FLSFRGEDT--RDNFTSHLYAALCRKKIKTFI 49 (165)
Q Consensus 20 FISy~~~D~--~~~fv~~L~~~L~~~gi~v~~ 49 (165)
||.+-|-|- +.+.+..|.+.|+.+|++|..
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~ 33 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVAT 33 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 677766663 356889999999999998765
No 107
>PRK09271 flavodoxin; Provisional
Probab=27.20 E-value=2.5e+02 Score=20.38 Aligned_cols=29 Identities=7% Similarity=0.044 Sum_probs=21.0
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEe
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFI 49 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~ 49 (165)
||-|-.+.- +.+|+.|.+.|+..|+.+-+
T Consensus 6 vY~S~tGnT--e~~A~~ia~~l~~~g~~v~~ 34 (160)
T PRK09271 6 AYASLSGNT--REVAREIEERCEEAGHEVDW 34 (160)
T ss_pred EEEcCCchH--HHHHHHHHHHHHhCCCeeEE
Confidence 345544442 57999999999999987643
No 108
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=27.11 E-value=1.7e+02 Score=25.04 Aligned_cols=57 Identities=23% Similarity=0.544 Sum_probs=36.4
Q ss_pred CCCCCCcchHHHHHHHhcCCeEEEEEecCCc----CchhHHH-HHHHHH-HHHHhcCCceeeEEee
Q 031151 53 ELRRGDEISPALLNAIQGSKISVVIFSQDYA----SSKWCLN-ELVEIL-ECKSKNGQIVVPVFHR 112 (165)
Q Consensus 53 ~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~----~S~wc~~-El~~a~-~~~~~~~~~iiPV~~~ 112 (165)
++.|...+.. .-|..+|--++|--..|+ .|..|.+ |+.++. +|...+|.++||||--
T Consensus 180 nmTpDrHLGa---A~id~~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGkvlIPvFAL 242 (501)
T KOG1136|consen 180 NMTPDRHLGA---AWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPVFAL 242 (501)
T ss_pred cCCcccccch---hhhccccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCeEEEEeeec
Confidence 4455555442 235666766665555565 5788875 665554 5667789999999953
No 109
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=26.88 E-value=2.8e+02 Score=22.77 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=9.0
Q ss_pred hHHHHHHHHHhcCCc
Q 031151 31 NFTSHLYAALCRKKI 45 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi 45 (165)
..+..+.+.|++.|+
T Consensus 169 ~~~~~~~~~~~~~g~ 183 (377)
T cd06379 169 AAQKRFETLLEEREI 183 (377)
T ss_pred HHHHHHHHHHHhcCC
Confidence 355566666666666
No 110
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=26.82 E-value=2.2e+02 Score=19.71 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=33.1
Q ss_pred CCC-cchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhh
Q 031151 56 RGD-EISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIR 119 (165)
Q Consensus 56 ~G~-~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~ 119 (165)
||. .+.......+..++.+|+|++..- ++..+++...+.........=+|++.-....|+.
T Consensus 57 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 57 AGQERFRSITSSYYRGAVGALLVYDITN---RESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred CChHHHHHHHHHHhCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 553 334445567788999999998753 4445555544433222111235555544455543
No 111
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=26.75 E-value=1.9e+02 Score=19.04 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCc
Q 031151 36 LYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASS 85 (165)
Q Consensus 36 L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S 85 (165)
+..-|+-.|+..+... ...+...+.+.+.+++..+.|++++.++...
T Consensus 9 ~v~gFrLaGv~~~~~~---~~~ee~~~~l~~l~~~~~~gIIii~e~~~~~ 55 (95)
T PF01990_consen 9 TVLGFRLAGVEGVYVN---TDPEEAEEALKELLKDEDVGIIIITEDLAEK 55 (95)
T ss_dssp HHHHHHHTTSEEEEES---HSHHHHHHHHHHHHHHTTEEEEEEEHHHHTT
T ss_pred HHHHHHHcCCCCccCC---CCHHHHHHHHHHHhcCCCccEEEeeHHHHHH
Confidence 3345566899888765 1234555667777778999999999988774
No 112
>PF14162 YozD: YozD-like protein
Probab=26.43 E-value=75 Score=19.30 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=20.4
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEE
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKT 47 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v 47 (165)
++.||+| |+ ...|..++..|-++|+-+
T Consensus 2 keiev~I-----DT-EEIAefFy~eL~kRGyvP 28 (57)
T PF14162_consen 2 KEIEVVI-----DT-EEIAEFFYHELVKRGYVP 28 (57)
T ss_pred CceEEEe-----cH-HHHHHHHHHHHHHccCCC
Confidence 3467777 44 578999999999999844
No 113
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=26.42 E-value=2.5e+02 Score=23.41 Aligned_cols=39 Identities=15% Similarity=-0.007 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCC
Q 031151 33 TSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSK 72 (165)
Q Consensus 33 v~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~ 72 (165)
+..|.+.|++.|+.+-.... ...++.-...+.+.|+++.
T Consensus 157 ~~~l~~~~~~~gi~v~~~~~-~~~~~~d~~~~l~~ik~~~ 195 (387)
T cd06386 157 LEGVHHVFQEEGYHMSIYPF-DETKDLDLDEIIRAIQASE 195 (387)
T ss_pred HHHHHHHHHhcCceEEEEec-CCCCcccHHHHHHHHHhcC
Confidence 66777788888877665432 2233323334455554433
No 114
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=26.40 E-value=3e+02 Score=22.14 Aligned_cols=53 Identities=8% Similarity=-0.022 Sum_probs=33.5
Q ss_pred cEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCc-chHHHHHHHhcCC
Q 031151 18 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDE-ISPALLNAIQGSK 72 (165)
Q Consensus 18 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~-~~~~i~~~I~~S~ 72 (165)
.|.+-|...+-.+.+...+...|+++|+++-... .+.+|.. +...+. .|..+.
T Consensus 138 ~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~-~~~~~~~d~~~~v~-~l~~~~ 191 (333)
T cd06328 138 KIATLAQDYAFGRDGVAAFKAALEKLGAAIVTEE-YAPTDTTDFTPYAQ-RLLDAL 191 (333)
T ss_pred eEEEEecCccccHHHHHHHHHHHHhCCCEEeeee-eCCCCCcchHHHHH-HHHhcC
Confidence 3555554444345678888899999999887654 4666754 554444 454444
No 115
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.22 E-value=1.4e+02 Score=24.37 Aligned_cols=29 Identities=34% Similarity=0.371 Sum_probs=20.7
Q ss_pred CCcCchhHHHHHHHHHHHHHhcCCceeeE
Q 031151 81 DYASSKWCLNELVEILECKSKNGQIVVPV 109 (165)
Q Consensus 81 ~~~~S~wc~~El~~a~~~~~~~~~~iiPV 109 (165)
.|++-.-|.+|+..+-...++.+-.+|=|
T Consensus 222 ~Ya~~~~~~eEl~~ae~l~~r~~~pvidv 250 (273)
T COG1806 222 RYASLDQCREELAYAEALFRRNGIPVIDV 250 (273)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCCCEEec
Confidence 37777889999999877666555555443
No 116
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=26.01 E-value=60 Score=21.28 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=12.9
Q ss_pred CChHHHHHHHHHHHHh
Q 031151 138 RTPEKVQKWRVALTQA 153 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v 153 (165)
.+++..++|..||..+
T Consensus 81 ~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 81 ETLDDLSQWVNHLITA 96 (96)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4578899999999753
No 117
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=25.89 E-value=1.3e+02 Score=24.86 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCeEEEEEecCCc---CchhHHHHHHHHHHHHHhcCCceeeEEe
Q 031151 62 PALLNAIQGSKISVVIFSQDYA---SSKWCLNELVEILECKSKNGQIVVPVFH 111 (165)
Q Consensus 62 ~~i~~~I~~S~~~I~vlS~~~~---~S~wc~~El~~a~~~~~~~~~~iiPV~~ 111 (165)
+.-..+|.+++.-++|+-|.+. .++|..+||.+.. +++ ++||=|
T Consensus 33 d~~~~~i~~~~f~llVVDps~~g~~~~~~~~eelr~~~----~gg--~~pIAY 79 (300)
T COG2342 33 DAYINEILNSPFDLLVVDPSYCGPFNTPWTIEELRTKA----DGG--VKPIAY 79 (300)
T ss_pred cchHHHHhcCCCcEEEEeccccCCCCCcCcHHHHHHHh----cCC--eeEEEE
Confidence 4456789999999999999665 6889999998863 333 788876
No 118
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=25.77 E-value=1.6e+02 Score=20.86 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCcEEEee---------C----CCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHH
Q 031151 33 TSHLYAALCRKKIKTFID---------D----EELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILE 97 (165)
Q Consensus 33 v~~L~~~L~~~gi~v~~d---------~----~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~ 97 (165)
+.+-...|-+.|+.+|-- . .+-..+..|.+--..-++.|.-+|+.-.|.+..|.-...|+..+.+
T Consensus 29 A~r~aa~l~~~G~~~fSpv~~sH~~~~~~~~~~~~~~~~~W~~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~ 106 (116)
T PF09152_consen 29 ANRVAAELLKAGHAAFSPVVMSHPINFELLGDDDPLIQKLWEDWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEE 106 (116)
T ss_dssp HHHHHHHHHHTT-EEEEHHHHHHHHHCCGTTS-HHHHHHHHHHHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeeEeccccccccchhcccccCcchhHHHHHHhHHHHHhcceeEEecCCCccccccHHHHHHHHHH
Confidence 344455566799998874 1 0111223333333445678999999999999999999999999865
No 119
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=25.69 E-value=1e+02 Score=24.69 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCcEE----EeeCCCCCCCCcchHHHHHHHhcCCe--EEEEEecCCcCch
Q 031151 34 SHLYAALCRKKIKT----FIDDEELRRGDEISPALLNAIQGSKI--SVVIFSQDYASSK 86 (165)
Q Consensus 34 ~~L~~~L~~~gi~v----~~d~~~~~~G~~~~~~i~~~I~~S~~--~I~vlS~~~~~S~ 86 (165)
+-|...|..+||+| .+..++.. .+..++..+++++.. .|++|||.-+.+.
T Consensus 146 dil~kkL~~~G~~Vds~~VY~T~~hp---~~~~~~~~alk~~~~~d~ivfFSPsgv~~~ 201 (260)
T KOG4132|consen 146 DILPKKLHDKGIRVDSCEVYETREHP---DGFKQFIHALKECGFIDWIVFFSPSGVKSS 201 (260)
T ss_pred HHHHHHHHhCCceeeEEEEEeeeecc---cHHHHHHHHHHhcCCcceEEEECcchHHHH
Confidence 45778888999875 22232222 234578889998743 6999999988753
No 120
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=25.64 E-value=2.3e+02 Score=19.60 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=19.9
Q ss_pred CCCcc-hHHHHHHHhcCCeEEEEEecCCcC
Q 031151 56 RGDEI-SPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 56 ~G~~~-~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
||... ...+...+..++++|+|++.+-..
T Consensus 57 ~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 86 (161)
T cd01861 57 AGQERFRSLIPSYIRDSSVAVVVYDITNRQ 86 (161)
T ss_pred CCcHHHHHHHHHHhccCCEEEEEEECcCHH
Confidence 55443 334556788999999999876443
No 121
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=25.53 E-value=3.2e+02 Score=21.15 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=31.6
Q ss_pred CCCcchHHHH-HHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhc
Q 031151 56 RGDEISPALL-NAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRK 120 (165)
Q Consensus 56 ~G~~~~~~i~-~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~ 120 (165)
+|....+.+. ..+..++++|+|++-.-.. ..+++...+.........=+||++-....|++.
T Consensus 57 ~G~e~~~~l~~~~~~~~d~illvfdis~~~---Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 57 SGSSYYDNVRPLAYPDSDAVLICFDISRPE---TLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred CCcHHHHHHhHHhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 5654333333 4567999999999955443 344443222211111112356666555666543
No 122
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=24.92 E-value=1.9e+02 Score=21.78 Aligned_cols=68 Identities=35% Similarity=0.377 Sum_probs=40.9
Q ss_pred HHhcCCcEEEe-eCC-CCC-CC-CcchHHHHHHHhcCCe-----EEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeE
Q 031151 39 ALCRKKIKTFI-DDE-ELR-RG-DEISPALLNAIQGSKI-----SVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPV 109 (165)
Q Consensus 39 ~L~~~gi~v~~-d~~-~~~-~G-~~~~~~i~~~I~~S~~-----~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV 109 (165)
.|++.||+..+ |.+ .+. |. +.+.+++.+.+++++. -|+|+|.+.-.+.-...+-+.+++. ..+ |||
T Consensus 35 ~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~--~lg---Ipv 109 (168)
T PF09419_consen 35 HLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEK--ALG---IPV 109 (168)
T ss_pred hhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHH--hhC---CcE
Confidence 48899998655 533 332 33 4566788777777663 3899998876655322333333332 223 888
Q ss_pred Ee
Q 031151 110 FH 111 (165)
Q Consensus 110 ~~ 111 (165)
+.
T Consensus 110 l~ 111 (168)
T PF09419_consen 110 LR 111 (168)
T ss_pred EE
Confidence 74
No 123
>PRK10628 LigB family dioxygenase; Provisional
Probab=24.70 E-value=3.3e+02 Score=21.80 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=54.6
Q ss_pred EecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHH
Q 031151 21 LSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKS 100 (165)
Q Consensus 21 ISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~ 100 (165)
|.|..... ..+|..+.+.|++.|+..--..+.+.-|.-.. +...--+.++=|+-+|=+...+.-...+|.++++..+
T Consensus 62 ~~Ypa~G~-p~LA~~i~~ll~~~~~~~~~~~rGlDHG~Wvp--L~~m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR 138 (246)
T PRK10628 62 THYPAPGS-PALAQRLVELLAPVPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALR 138 (246)
T ss_pred ecCCCCCC-HHHHHHHHHHhhhcCcccCCcccCcccchhhh--hhhhCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhc
Confidence 67755543 57999999999998883211225666665433 3445557888889999888778878889999987654
Q ss_pred h
Q 031151 101 K 101 (165)
Q Consensus 101 ~ 101 (165)
+
T Consensus 139 ~ 139 (246)
T PRK10628 139 D 139 (246)
T ss_pred c
Confidence 3
No 124
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=24.58 E-value=2.8e+02 Score=22.82 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=48.3
Q ss_pred cEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhcccCc
Q 031151 45 IKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRKQNGS 124 (165)
Q Consensus 45 i~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~ 124 (165)
+.+.+..- ....-+|.+.+.+.|++++.+|+|+-.-|-.-. -+.+|..|.. .+=+||++-.+-..+
T Consensus 121 ~~vy~qPp-~~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~d-If~DLleAa~------kR~VpVYiLLD~~~~------ 186 (284)
T PF07894_consen 121 ATVYFQPP-KDGQPHIKEVVRRMIQQAQKVIAIVMDVFTDVD-IFCDLLEAAN------KRGVPVYILLDEQNL------ 186 (284)
T ss_pred EEEEeCCC-CCCCCCHHHHHHHHHHHhcceeEEEeeccccHH-HHHHHHHHHH------hcCCcEEEEechhcC------
Confidence 45665541 244567788888999999999999877776533 3334444421 244577754444433
Q ss_pred HHHHHHHhHHhcCC
Q 031151 125 FRDAFVKHEKQFKR 138 (165)
Q Consensus 125 f~~~f~~~~~~~~~ 138 (165)
..|.+++++...
T Consensus 187 --~~Fl~Mc~~~~v 198 (284)
T PF07894_consen 187 --PHFLEMCEKLGV 198 (284)
T ss_pred --hHHHHHHHHCCC
Confidence 367778877653
No 125
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=24.39 E-value=3.1e+02 Score=23.18 Aligned_cols=21 Identities=0% Similarity=-0.140 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHhcCCcEEEee
Q 031151 30 DNFTSHLYAALCRKKIKTFID 50 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d 50 (165)
...+..+.+.|++.|+.+-..
T Consensus 186 ~~~~~~f~~~~~~~GicIa~~ 206 (403)
T cd06361 186 RSALETFIIQAEANGVCIAFK 206 (403)
T ss_pred HHHHHHHHHHHHHCCeEEEEE
Confidence 456667777777777655433
No 126
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=24.26 E-value=2.6e+02 Score=19.64 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=19.5
Q ss_pred CCCc-chHHHHHHHhcCCeEEEEEecCCcCc
Q 031151 56 RGDE-ISPALLNAIQGSKISVVIFSQDYASS 85 (165)
Q Consensus 56 ~G~~-~~~~i~~~I~~S~~~I~vlS~~~~~S 85 (165)
||.. +.......+..++.+|++++..-..|
T Consensus 60 ~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s 90 (165)
T cd01864 60 AGQERFRTITQSYYRSANGAIIAYDITRRSS 90 (165)
T ss_pred CChHHHHHHHHHHhccCCEEEEEEECcCHHH
Confidence 5543 33334455778999999998865443
No 127
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.06 E-value=3.1e+02 Score=21.73 Aligned_cols=42 Identities=7% Similarity=-0.110 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCC
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSK 72 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~ 72 (165)
...+..+...|++.|+.+--.. .+.+|+.=...+...|..++
T Consensus 151 ~~~~~~~~~~~~~~G~~vv~~~-~~~~~~~d~~~~v~~l~~~~ 192 (312)
T cd06346 151 VGLADAFTKAFEALGGTVTNVV-AHEEGKSSYSSEVAAAAAGG 192 (312)
T ss_pred hHHHHHHHHHHHHcCCEEEEEE-eeCCCCCCHHHHHHHHHhcC
Confidence 4456666777777777765433 35555433334444454444
No 128
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=23.98 E-value=73 Score=21.63 Aligned_cols=17 Identities=12% Similarity=0.397 Sum_probs=14.4
Q ss_pred CChHHHHHHHHHHHHhh
Q 031151 138 RTPEKVQKWRVALTQAS 154 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~ 154 (165)
.+++..++|..|+.+|+
T Consensus 92 ~s~ee~~~Wi~~I~~~~ 108 (108)
T cd01266 92 KNEEEMTLWVNCICKLC 108 (108)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 45788999999998875
No 129
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=23.75 E-value=4.8e+02 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHhcCCcEEEee
Q 031151 30 DNFTSHLYAALCRKKIKTFID 50 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d 50 (165)
...+..|.++|++.|+.+-..
T Consensus 186 ~~~~~~~~~~~~~~gi~I~~~ 206 (469)
T cd06365 186 EQFLSDLREEMQRNGICLAFV 206 (469)
T ss_pred HHHHHHHHHHHHHCCeEEEEE
Confidence 456677777777777766543
No 130
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=23.73 E-value=2.6e+02 Score=19.43 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=33.1
Q ss_pred CcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhc
Q 031151 58 DEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRK 120 (165)
Q Consensus 58 ~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~ 120 (165)
+.+.......+++++.+|++++.+-..| .+++...+.........-+|+++-....|+..
T Consensus 59 ~~~~~~~~~~~~~~~~~ii~fd~~~~~S---~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 59 ERFDSLRDIFYRNSDAIIIVFDVTDEES---FENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp GGGHHHHHHHHTTESEEEEEEETTBHHH---HHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred cccccccccccccccccccccccccccc---ccccccccccccccccccccceeeeccccccc
Confidence 3444333456889999999999766554 34444433332222223345555445555554
No 131
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=23.60 E-value=3.6e+02 Score=21.11 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=41.5
Q ss_pred CCCceecEEEecccC--CC-chhHHHHHHHHHhcCCcEE-EeeCCCCC--CC----CcchHHHHHHHhcCCeEEEEEecC
Q 031151 12 SSSCKYDVFLSFRGE--DT-RDNFTSHLYAALCRKKIKT-FIDDEELR--RG----DEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 12 ~~~~~~DVFISy~~~--D~-~~~fv~~L~~~L~~~gi~v-~~d~~~~~--~G----~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
.++....|-+...+- .. -..+++.+.+.|...|..+ .+|-.++. .. ..-...+.+.|+.++ .+++.||.
T Consensus 22 ~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~AD-gvii~TPE 100 (219)
T TIGR02690 22 HKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSE-GQVWCSPE 100 (219)
T ss_pred CCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCC-EEEEeCCc
Confidence 455666765544322 11 1346677777777667766 34433322 11 111245667788886 66778999
Q ss_pred CcCc
Q 031151 82 YASS 85 (165)
Q Consensus 82 ~~~S 85 (165)
|..|
T Consensus 101 Yn~s 104 (219)
T TIGR02690 101 RHGA 104 (219)
T ss_pred cccC
Confidence 9876
No 132
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.53 E-value=1.1e+02 Score=20.66 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=31.4
Q ss_pred ecEEEecccCCCchhHHHHHHHHHhcCCcEEEe-eCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFI-DDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 17 ~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~-d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
.=++||+++.. ......+. .++++|.++.. -. .++.++ -+.++..+.+-+.+..
T Consensus 56 ~vi~is~sg~~--~~~~~~~~-~ak~~g~~vi~iT~---~~~~~l-------~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 56 LVIIISYSGET--RELIELLR-FAKERGAPVILITS---NSESPL-------ARLADIVLYIPTGEES 110 (131)
T ss_dssp EEEEEESSSTT--HHHHHHHH-HHHHTTSEEEEEES---STTSHH-------HHHSSEEEEEESSCGS
T ss_pred eeEeeeccccc--hhhhhhhH-HHHhcCCeEEEEeC---CCCCch-------hhhCCEEEEecCCCcc
Confidence 34677777765 45555554 88888887633 22 122222 2456777777666554
No 133
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=23.40 E-value=2.8e+02 Score=19.74 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=19.6
Q ss_pred CCCc-chHHHHHHHhcCCeEEEEEecCCcCc
Q 031151 56 RGDE-ISPALLNAIQGSKISVVIFSQDYASS 85 (165)
Q Consensus 56 ~G~~-~~~~i~~~I~~S~~~I~vlS~~~~~S 85 (165)
+|.. +.......+++++.+|+|++..-..|
T Consensus 71 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s 101 (180)
T cd04127 71 AGQERFRSLTTAFFRDAMGFLLIFDLTNEQS 101 (180)
T ss_pred CChHHHHHHHHHHhCCCCEEEEEEECCCHHH
Confidence 4533 33334556889999999999764443
No 134
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=23.37 E-value=3.2e+02 Score=20.38 Aligned_cols=61 Identities=8% Similarity=0.075 Sum_probs=33.1
Q ss_pred CCCcchHHHH-HHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhc
Q 031151 56 RGDEISPALL-NAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRK 120 (165)
Q Consensus 56 ~G~~~~~~i~-~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~ 120 (165)
+|..-...+. ..++.++.+|+|++-.-..| .+++..-++...... .-+||++-....|+.+
T Consensus 63 ~G~~~~~~l~~~~~~~ad~illVfD~t~~~S---f~~~~~w~~~i~~~~-~~~piilVGNK~DL~~ 124 (189)
T cd04121 63 SGQGRFCTIFRSYSRGAQGIILVYDITNRWS---FDGIDRWIKEIDEHA-PGVPKILVGNRLHLAF 124 (189)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhC-CCCCEEEEEECccchh
Confidence 5544344444 44679999999999765443 333332222221111 2367776556666654
No 135
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.20 E-value=3.6e+02 Score=23.55 Aligned_cols=63 Identities=19% Similarity=0.160 Sum_probs=44.3
Q ss_pred CCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 13 SSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 13 ~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
.....||||..-+++. ...+-.|...|+++|+++=++... ..+..++..|-+.--.+++++-.
T Consensus 332 ~~~~~~v~v~~~~~~~-~~~a~~la~~LR~~g~~~~~~~~~----r~~k~q~k~A~~~g~~~~viiGe 394 (429)
T COG0124 332 VETRVDVYVVPLGEDA-EPEALKLAQKLRAAGISVEVDYSG----RKLKKQFKYADKLGARFAVILGE 394 (429)
T ss_pred cCCCCCEEEEEcCchh-HHHHHHHHHHHHHcCCcEEEEecc----ccHHHHHHHHHHCCCCEEEEEcc
Confidence 4567899999988875 467889999999999998887632 22666666666654445555543
No 136
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.15 E-value=2.4e+02 Score=24.64 Aligned_cols=73 Identities=11% Similarity=0.203 Sum_probs=47.7
Q ss_pred CCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhcccCcHHHHH
Q 031151 54 LRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRKQNGSFRDAF 129 (165)
Q Consensus 54 ~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~f~~~f 129 (165)
+..|-.+...+.--++.++.+|+++-|+=+. ..+|+..++...+.....|=-|+=+.+--+-.+.++.||...
T Consensus 165 isR~ydF~~v~~WFaeR~D~IiLlfD~hKLD---IsdEf~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALm 237 (532)
T KOG1954|consen 165 ISRGYDFTGVLEWFAERVDRIILLFDAHKLD---ISDEFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALM 237 (532)
T ss_pred ccccCChHHHHHHHHHhccEEEEEechhhcc---ccHHHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHH
Confidence 5667778888888899999999999998775 446888887776544444444443333222333444555443
No 137
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=23.06 E-value=1.4e+02 Score=21.42 Aligned_cols=44 Identities=16% Similarity=0.103 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCCcEEEeeCCCCCCC--CcchHHHHHHHhcCCeEEE
Q 031151 31 NFTSHLYAALCRKKIKTFIDDEELRRG--DEISPALLNAIQGSKISVV 76 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi~v~~d~~~~~~G--~~~~~~i~~~I~~S~~~I~ 76 (165)
.....|...|++.|+.+..-. +.+- +.+.+.+.+++++++++|.
T Consensus 27 ~n~~~l~~~l~~~G~~v~~~~--~v~Dd~~~i~~~l~~~~~~~DliIt 72 (144)
T TIGR00177 27 SNGPLLAALLEEAGFNVSRLG--IVPDDPEEIREILRKAVDEADVVLT 72 (144)
T ss_pred CcHHHHHHHHHHCCCeEEEEe--ecCCCHHHHHHHHHHHHhCCCEEEE
Confidence 445678888999999876532 2222 2334455555555554443
No 138
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=22.89 E-value=94 Score=20.99 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=15.4
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031151 138 RTPEKVQKWRVALTQASNL 156 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~ 156 (165)
.+++...+|..||..|-+.
T Consensus 84 ~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 84 ETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 4578889999999988653
No 139
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=22.71 E-value=4.5e+02 Score=21.82 Aligned_cols=54 Identities=7% Similarity=0.107 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcC---CeEEEEEecCCcC
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGS---KISVVIFSQDYAS 84 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S---~~~I~vlS~~~~~ 84 (165)
...+..|.+.|++.|+.+-... .+.+++.-...+.+.|+.. +++|+.....+..
T Consensus 146 ~~~~~~l~~~l~~~gi~v~~~~-~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~~~~~ 202 (382)
T cd06371 146 VETAQKLASALRAHGLPVGLVT-SMGPDEKGAREALKKVRSADRVRVVIMCMHSVLIG 202 (382)
T ss_pred HHHHHHHHHHHHHCCCcEEEEE-EecCCHHHHHHHHHHHhcCCCcEEEEEEeeccccC
Confidence 3467788888888888765433 3444543334555556653 3444444444443
No 140
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=22.69 E-value=74 Score=21.66 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=13.1
Q ss_pred CChHHHHHHHHHHHHh
Q 031151 138 RTPEKVQKWRVALTQA 153 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v 153 (165)
.+++..++|..||.+|
T Consensus 91 ~s~~er~~WI~ai~~~ 106 (106)
T cd01238 91 PTEELRKRWIKALKQV 106 (106)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3578889999999875
No 141
>PTZ00445 p36-lilke protein; Provisional
Probab=22.59 E-value=2e+02 Score=22.78 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHhcCCcEEEe
Q 031151 30 DNFTSHLYAALCRKKIKTFI 49 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~ 49 (165)
.+-++.+.+.|++.||++..
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va 47 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIA 47 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 45678888889999998765
No 142
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=22.29 E-value=1.6e+02 Score=21.06 Aligned_cols=31 Identities=29% Similarity=0.243 Sum_probs=23.3
Q ss_pred cEEEecccCCCchhHHHHHHHHHhcCCcEEEeeC
Q 031151 18 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDD 51 (165)
Q Consensus 18 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~ 51 (165)
-+.|..... ..|...|.+.|+++||-|--+.
T Consensus 26 t~~L~q~~~---d~Fg~aL~~~LR~~GYaV~e~~ 56 (121)
T PF07283_consen 26 TFELKQKDP---DPFGQALENALRAKGYAVIEDD 56 (121)
T ss_pred EEEEEcCCC---ChHHHHHHHHHHhcCcEEEecC
Confidence 345544444 4899999999999999988765
No 143
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=22.24 E-value=1.2e+02 Score=21.33 Aligned_cols=46 Identities=13% Similarity=0.327 Sum_probs=29.2
Q ss_pred CcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeec
Q 031151 58 DEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRV 113 (165)
Q Consensus 58 ~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v 113 (165)
+.+.+.+.+.+.+.++.|++++.+.++ ++...++..+ .++|....+
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~------~i~~~I~~~~----~~~PaIieI 91 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAE------MIRHAVDAHT----RSIPAVLEI 91 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHH------HhHHHHHhcC----CcCCEEEEE
Confidence 345556666688899999999887665 3333333322 577776653
No 144
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=22.22 E-value=2.8e+02 Score=19.37 Aligned_cols=29 Identities=3% Similarity=0.133 Sum_probs=20.2
Q ss_pred CCC-cchHHHHHHHhcCCeEEEEEecCCcC
Q 031151 56 RGD-EISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 56 ~G~-~~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
+|. .+.......+..++.+|++++.....
T Consensus 64 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 93 (169)
T cd04114 64 AGQERFRSITQSYYRSANALILTYDITCEE 93 (169)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHH
Confidence 454 34444467788999999999876443
No 145
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=22.16 E-value=1.3e+02 Score=18.72 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=23.6
Q ss_pred cEEEecccCCCchhHHHHHHHHHhcCCcEEEeeC
Q 031151 18 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDD 51 (165)
Q Consensus 18 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~ 51 (165)
.+.|+++..+ +.+++.+...|.+-||..-+..
T Consensus 21 ~~~i~~~~~s--~~ll~~v~~lL~~lGi~~~i~~ 52 (77)
T PF14528_consen 21 SVRISISSKS--KELLEDVQKLLLRLGIKASIYE 52 (77)
T ss_dssp EEEEEEEES---HHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEEEEECC--HHHHHHHHHHHHHCCCeeEEEE
Confidence 5677777776 6899999999999999876653
No 146
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=22.13 E-value=3.3e+02 Score=24.03 Aligned_cols=86 Identities=21% Similarity=0.361 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHH-HhcCCceeeEEee
Q 031151 34 SHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECK-SKNGQIVVPVFHR 112 (165)
Q Consensus 34 ~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~-~~~~~~iiPV~~~ 112 (165)
..|.+.|.+.|+.+++-. |+.. +.+.+-+++..+..++...+| ..| ..+-..++... .+.+..+. .|.+
T Consensus 58 ~~L~~~L~~~gi~L~v~~-----~~~~-~~l~~~~~~~~~~~v~~n~~~--~~~-~~~rD~al~~~l~~~gi~~~-~~~d 127 (461)
T COG0415 58 QALQQSLAELGIPLLVRE-----GDPE-QVLPELAKQLAATTVFWNRDY--EEW-ERQRDAALAQPLTEVGIAVH-SFWD 127 (461)
T ss_pred HHHHHHHHHcCCceEEEe-----CCHH-HHHHHHHHHhCcceEEeeeee--chh-HHHHHHHHHHHHHhcCceEE-Eecc
Confidence 568888999999999754 3432 356666777777777777888 333 33344444433 33333333 3433
Q ss_pred ---cCCchhhcccCcHHHHH
Q 031151 113 ---VDPSDIRKQNGSFRDAF 129 (165)
Q Consensus 113 ---v~p~~v~~~~~~f~~~f 129 (165)
..|.+|+.+.+..=..|
T Consensus 128 ~~l~~p~~~~t~~~~~y~vf 147 (461)
T COG0415 128 ALLHEPGEVRTGSGEPYKVF 147 (461)
T ss_pred ccccCHhhccCCCCCCcccc
Confidence 57888888877443333
No 147
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=22.03 E-value=76 Score=21.47 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHhcCCcEEEee
Q 031151 30 DNFTSHLYAALCRKKIKTFID 50 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d 50 (165)
..|+..|...|+.+|+++=..
T Consensus 8 ~~fv~~Lk~lLk~rGi~v~~~ 28 (90)
T PF02337_consen 8 QPFVSILKHLLKERGIRVKKK 28 (90)
T ss_dssp HHHHHHHHHHHHCCT----HH
T ss_pred hHHHHHHHHHHHHcCeeecHH
Confidence 379999999999999988654
No 148
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=21.88 E-value=2.9e+02 Score=19.41 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=32.9
Q ss_pred CCCc-chHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhc
Q 031151 56 RGDE-ISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRK 120 (165)
Q Consensus 56 ~G~~-~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~ 120 (165)
+|.. +.......+++++.+|+|++.+-..| .+++...+.........-+|+++-....|+..
T Consensus 59 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 59 AGQERFRAVTRSYYRGAAGALMVYDITRRST---YNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 5543 33334566889999999999765544 33333333322222222355555445566543
No 149
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=21.82 E-value=4.2e+02 Score=21.15 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCC-CcchHHHHHHHhcC
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRG-DEISPALLNAIQGS 71 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G-~~~~~~i~~~I~~S 71 (165)
+.++..+...|++.|+.+-... .+.++ ..+...+.+ |.++
T Consensus 149 ~~~~~~~~~~~~~~G~~vv~~~-~~~~~~~d~~~~v~~-l~~~ 189 (334)
T cd06327 149 HSLERDARKVVKANGGKVVGSV-RHPLGTSDFSSYLLQ-AQAS 189 (334)
T ss_pred HHHHHHHHHHHHhcCCEEcCcc-cCCCCCccHHHHHHH-HHhC
Confidence 4577777788888888775543 34444 344444443 4443
No 150
>PF15409 PH_8: Pleckstrin homology domain
Probab=21.77 E-value=81 Score=21.23 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHh
Q 031151 139 TPEKVQKWRVALTQA 153 (165)
Q Consensus 139 ~~~~~~~W~~al~~v 153 (165)
+++..+.|..||..+
T Consensus 74 s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 74 SQEDFQRWVSALQKA 88 (89)
T ss_pred CHHHHHHHHHHHHhc
Confidence 578899999999865
No 151
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=21.67 E-value=3.3e+02 Score=24.66 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=41.3
Q ss_pred ceecEEEecccCC-CchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCC
Q 031151 15 CKYDVFLSFRGED-TRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDY 82 (165)
Q Consensus 15 ~~~DVFISy~~~D-~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~ 82 (165)
..++|+|-.-..+ .....+..|...|++.|+++.+|.. |. +...+..+-+.---.++++..+-
T Consensus 456 AP~kV~VIpl~~~~el~~~A~eIa~~LR~~GI~VeiD~s----~s-IGKq~rrADeiGiPf~IIIG~~E 519 (551)
T TIGR00389 456 APIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIKYDDS----GT-IGKRYRRADEIGTPFCVTIDFET 519 (551)
T ss_pred CCceEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC----CC-HHHHHHHHHHcCCCEEEEECCch
Confidence 3567766554432 1246788999999999999999873 33 66666666554444566665544
No 152
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=21.62 E-value=1.6e+02 Score=21.92 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=10.4
Q ss_pred hHHHHHHHHHhcCCcEEEe
Q 031151 31 NFTSHLYAALCRKKIKTFI 49 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi~v~~ 49 (165)
.|...|..+|++.||-|--
T Consensus 64 ~Fg~aL~~aLR~~GYaV~e 82 (151)
T PRK13883 64 AFGQALVKALRDKGYALLE 82 (151)
T ss_pred HHHHHHHHHHHHcCeEEEe
Confidence 4555555555555555543
No 153
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=21.53 E-value=1.1e+02 Score=25.60 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=24.5
Q ss_pred cEEEecccCCCchhHHHHHHHHHhcCCcEEEeeC
Q 031151 18 DVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDD 51 (165)
Q Consensus 18 DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~ 51 (165)
=|||. +.| ..|-..|+..|.++|++||-.-
T Consensus 31 ~VlIT--GCD--SGfG~~LA~~L~~~Gf~V~Agc 60 (322)
T KOG1610|consen 31 AVLIT--GCD--SGFGRLLAKKLDKKGFRVFAGC 60 (322)
T ss_pred EEEEe--cCC--cHHHHHHHHHHHhcCCEEEEEe
Confidence 47774 677 4799999999999999998643
No 154
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=21.51 E-value=93 Score=20.90 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.8
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031151 138 RTPEKVQKWRVALTQASN 155 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~ 155 (165)
.+++...+|+.||..+.+
T Consensus 83 ~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 83 RTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 457888999999998754
No 155
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=21.45 E-value=3.3e+02 Score=22.53 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=38.7
Q ss_pred ecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCC
Q 031151 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDY 82 (165)
Q Consensus 17 ~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~ 82 (165)
-++-||..|+-+-+.+...|...+.++|++++++..... .+..+.+ ......+.+|=+.
T Consensus 131 ~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~------~e~l~~L-~~~~d~i~VSLda 189 (322)
T PRK13762 131 KHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNGTR------PDVLEKL-EEEPTQLYVSLDA 189 (322)
T ss_pred CEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCCCC------HHHHHHH-HhcCCEEEEEccC
Confidence 367888778776556777888899999999999875533 2334444 3333444555443
No 156
>PF13289 SIR2_2: SIR2-like domain
Probab=21.42 E-value=2.8e+02 Score=18.99 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=8.5
Q ss_pred hHHHHHHHHHhcCCcEEEe
Q 031151 31 NFTSHLYAALCRKKIKTFI 49 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi~v~~ 49 (165)
.+-..|...|..+ --+|+
T Consensus 75 ~~~~~l~~~l~~~-~~lfi 92 (143)
T PF13289_consen 75 WFPNFLRSLLRSK-TLLFI 92 (143)
T ss_pred HHHHHHHHHHcCC-CEEEE
Confidence 3445555555333 33444
No 157
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=21.39 E-value=94 Score=19.08 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.9
Q ss_pred CChHHHHHHHHHHHHhh
Q 031151 138 RTPEKVQKWRVALTQAS 154 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~ 154 (165)
.+.+..++|..+|..+.
T Consensus 85 ~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 85 ESEEEREEWVDALRKAI 101 (102)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 35788999999998765
No 158
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=21.39 E-value=3e+02 Score=19.35 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=30.6
Q ss_pred CCC-cchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchh
Q 031151 56 RGD-EISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDI 118 (165)
Q Consensus 56 ~G~-~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v 118 (165)
+|. .+.......++.++.+|+|++..-.. ...++...++..+... .=+|+++-....|+
T Consensus 57 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl 116 (161)
T cd04124 57 AGQERFQTMHASYYHKAHACILVFDVTRKI---TYKNLSKWYEELREYR-PEIPCIVVANKIDL 116 (161)
T ss_pred CCchhhhhhhHHHhCCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhC-CCCcEEEEEECccC
Confidence 454 33344456688999999999865433 3333333333222211 11455554445554
No 159
>PRK05568 flavodoxin; Provisional
Probab=21.28 E-value=2.9e+02 Score=19.15 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=34.1
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEe-eCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCc
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFI-DDEELRRGDEISPALLNAIQGSKISVVIFSQDYASS 85 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~-d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S 85 (165)
||.|-.+. + +..|+.|.+.|+..|+.+-+ +-.+... ..+.+++ .|++-||-|...
T Consensus 7 vY~S~~Gn-T-~~~a~~i~~~~~~~g~~v~~~~~~~~~~---------~~~~~~d-~iilgsp~y~~~ 62 (142)
T PRK05568 7 IYWSGTGN-T-EAMANLIAEGAKENGAEVKLLNVSEASV---------DDVKGAD-VVALGSPAMGDE 62 (142)
T ss_pred EEECCCch-H-HHHHHHHHHHHHHCCCeEEEEECCCCCH---------HHHHhCC-EEEEECCccCcc
Confidence 45554444 2 57899999999989986543 3222111 1356777 567778888654
No 160
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.22 E-value=3.3e+02 Score=21.26 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=27.1
Q ss_pred ceeeE--EeecCCchhhcccCcHHHHHHHhHHhcCCC--hHHHHHHHHHHHHhhccc
Q 031151 105 IVVPV--FHRVDPSDIRKQNGSFRDAFVKHEKQFKRT--PEKVQKWRVALTQASNLS 157 (165)
Q Consensus 105 ~iiPV--~~~v~p~~v~~~~~~f~~~f~~~~~~~~~~--~~~~~~W~~al~~v~~~~ 157 (165)
.|.|+ .|+.+|.|+-...-.-| .-+..++ .+.+..|+.+|..++..-
T Consensus 147 lVv~~S~~~~~~~dd~~eeave~G------ll~e~E~~~~~~~~~~e~~L~~l~~~l 197 (204)
T COG3286 147 LVVAVSIVYGLDPDDAAEEAVELG------LLEEGEDGLRELIKNKERALETLLKAL 197 (204)
T ss_pred hhhhhhhHhCCCHHHHHHHHHHhh------hhhccchhHHHhhhhHHHHHHHHHHHh
Confidence 44554 46899999764321111 1111111 256788999999888765
No 161
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.19 E-value=1.5e+02 Score=20.11 Aligned_cols=27 Identities=26% Similarity=0.107 Sum_probs=16.3
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEE
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTF 48 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~ 48 (165)
++||+++.. ..+....+.++++|.++.
T Consensus 51 I~iS~sG~t---~e~~~~~~~a~~~g~~vi 77 (126)
T cd05008 51 IAISQSGET---ADTLAALRLAKEKGAKTV 77 (126)
T ss_pred EEEeCCcCC---HHHHHHHHHHHHcCCeEE
Confidence 567777664 234455566667776654
No 162
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=21.08 E-value=1.3e+02 Score=25.72 Aligned_cols=47 Identities=13% Similarity=0.300 Sum_probs=30.3
Q ss_pred HHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCe-EEEEEecCCcC
Q 031151 36 LYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKI-SVVIFSQDYAS 84 (165)
Q Consensus 36 L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~-~I~vlS~~~~~ 84 (165)
+.+.|.+.|+.|+++.+++... ...+..+.+...+. .|.+++|||.+
T Consensus 300 ~~~~l~~~~ipVlf~~d~L~~~--~v~ea~rql~~~dk~~iaFf~pny~~ 347 (360)
T PF07429_consen 300 FWQDLKEQGIPVLFYGDELDEA--LVREAQRQLANVDKQQIAFFAPNYLQ 347 (360)
T ss_pred HHHHHHhCCCeEEeccccCCHH--HHHHHHHHHhhCcccceeeeCCchHH
Confidence 5567777888888776555322 22244444555554 58899999987
No 163
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=21.04 E-value=3.4e+02 Score=21.28 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=6.8
Q ss_pred hHHHHHHHHHhcCCcE
Q 031151 31 NFTSHLYAALCRKKIK 46 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi~ 46 (165)
+|...|...|++.|+.
T Consensus 78 s~~~~L~~~~~~~~~~ 93 (224)
T PF04244_consen 78 SFEDALARALKQHGID 93 (224)
T ss_dssp SHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHcCCC
Confidence 4555555555555443
No 164
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=20.86 E-value=3.3e+02 Score=20.71 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=40.7
Q ss_pred CcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhhc
Q 031151 58 DEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIRK 120 (165)
Q Consensus 58 ~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~ 120 (165)
+.+......-|...+-+++|+|=.-..|--+...+...+. +..+..-+||++-....|+.+
T Consensus 62 ~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~--r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 62 EEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQIL--RVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred ccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHH--HhhCcCCCCEEEEEEcccchh
Confidence 3444445566899999999999888887655555554442 222333399998777777754
No 165
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.84 E-value=1.9e+02 Score=16.87 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=23.0
Q ss_pred CceecEEEecccCCCchhHHHHHHHHHhcCCcEEE
Q 031151 14 SCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTF 48 (165)
Q Consensus 14 ~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~ 48 (165)
...+.+++.....+ ..-...+...|++.|++++
T Consensus 40 ~~~~~~~i~v~~~~--~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 40 LGEVEVELTLETRG--AEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CceEEEEEEEEeCC--HHHHHHHHHHHHHcCCEEe
Confidence 35566777776554 2345788889999999875
No 166
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=20.76 E-value=2.8e+02 Score=18.75 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=19.7
Q ss_pred hHHHHHHHhcC-CeEEEEEecCCcCchhHHHHH
Q 031151 61 SPALLNAIQGS-KISVVIFSQDYASSKWCLNEL 92 (165)
Q Consensus 61 ~~~i~~~I~~S-~~~I~vlS~~~~~S~wc~~El 92 (165)
.+++.+++++- +.+++.+....+ ++|....
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC--~~C~~~~ 33 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGC--PYCDKLK 33 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCC--HHHHHHH
Confidence 45778888888 777776655443 4666543
No 167
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=20.66 E-value=3.1e+02 Score=19.27 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=28.9
Q ss_pred HHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHh---cCCceeeEEeecCCchhh
Q 031151 65 LNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSK---NGQIVVPVFHRVDPSDIR 119 (165)
Q Consensus 65 ~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~---~~~~iiPV~~~v~p~~v~ 119 (165)
...+..++.+|+|++-+-..| ..++...++..+. ....=+|+++-....|+.
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQS---LEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 456788999999998765543 3444433332211 111335666655555554
No 168
>PRK09004 FMN-binding protein MioC; Provisional
Probab=20.61 E-value=2.9e+02 Score=19.84 Aligned_cols=43 Identities=16% Similarity=0.062 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
+.+|+.|...|.+.|+.+-+-. .. + ...+.+.+ .++++++.|-
T Consensus 16 e~~A~~l~~~~~~~g~~~~~~~--~~--~------~~~l~~~~-~li~~~sT~G 58 (146)
T PRK09004 16 EYVADHLAEKLEEAGFSTETLH--GP--L------LDDLSASG-LWLIVTSTHG 58 (146)
T ss_pred HHHHHHHHHHHHHcCCceEEec--cC--C------HHHhccCC-eEEEEECCCC
Confidence 6799999999999998876532 11 1 12345554 5556666663
No 169
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=20.33 E-value=3.4e+02 Score=24.02 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcC
Q 031151 31 NFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGS 71 (165)
Q Consensus 31 ~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S 71 (165)
.-++.|.+.|++.|++..+- .||+... .+.++|.++
T Consensus 14 ~~~~~l~~~L~~~GV~~vFg----vpG~~~~-~l~dal~~~ 49 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTG----IPGGAIL-PLYDALSQS 49 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEe----CCCcccH-HHHHHHhcc
Confidence 35778888888899876653 4777665 456677655
No 170
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=20.29 E-value=4.2e+02 Score=20.53 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHhcCCcEEEeeCCCCCC
Q 031151 29 RDNFTSHLYAALCRKKIKTFIDDEELRR 56 (165)
Q Consensus 29 ~~~fv~~L~~~L~~~gi~v~~d~~~~~~ 56 (165)
...|+..|...+++.|+++.+|.....+
T Consensus 52 q~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 52 QAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4678889999999999999999865443
No 171
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=20.20 E-value=4e+02 Score=20.31 Aligned_cols=86 Identities=13% Similarity=0.126 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCC----------------cCchhHHHHHH
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDY----------------ASSKWCLNELV 93 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~----------------~~S~wc~~El~ 93 (165)
..+.+.|.+.+...++.+.......... ....+..+..++++.+|+++.+.+ ..-+++..||.
T Consensus 46 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~aD~vIv~~~~~~~e~~~~~~~~~~~~~~~~l~~~q~~li 124 (227)
T PF01915_consen 46 VTPLDALKQRFGNAGVVVPEGGDAVDDD-EGIDEAVAAAKEADVVIVFVGRPSGEGNDNNTEGESDRSDLALPANQQELI 124 (227)
T ss_dssp BHHHHHHHHHHHTTSEEEECCCCCCCCC-SCHHHHHHHHHCSSEEEEEEETTSBCCCSS-EETTGSCSSTBCCCHHHHHH
T ss_pred ccHHhhhccccCCCceEEeeeccccccc-cchHHHHHHhhcCCEEEEeccccccccccccccccCCcccccchhhHHHHH
Confidence 3567778888888888766533222223 334577888999999999988433 23345667776
Q ss_pred HHHHHHHhcCCceeeEEeecCCchhh
Q 031151 94 EILECKSKNGQIVVPVFHRVDPSDIR 119 (165)
Q Consensus 94 ~a~~~~~~~~~~iiPV~~~v~p~~v~ 119 (165)
..+... +..+|-|+.-..|-++.
T Consensus 125 ~~v~~~---~~~~Ivvv~~~~P~~l~ 147 (227)
T PF01915_consen 125 KAVAAA---GKKVIVVVNSGNPYDLD 147 (227)
T ss_dssp HHHHHH---HSCEEEEEE-SSGGCGH
T ss_pred HHHHHh---cCCeEEEEecCCccccH
Confidence 665432 24555555555566553
No 172
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=20.11 E-value=2.5e+02 Score=21.15 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=28.4
Q ss_pred eecEEEecccCCCc--hhHHHHHHHHHhcCCcEEEeeCCCCC-CCCcchHH
Q 031151 16 KYDVFLSFRGEDTR--DNFTSHLYAALCRKKIKTFIDDEELR-RGDEISPA 63 (165)
Q Consensus 16 ~~DVFISy~~~D~~--~~fv~~L~~~L~~~gi~v~~d~~~~~-~G~~~~~~ 63 (165)
...||+.|...|.- ...+..+.+.|++.|.++-+.. .. .|-.+..+
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~--~~g~gH~i~~~ 203 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHE--YPGGGHEISPE 203 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEE--ETT-SSS--HH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEE--cCCCCCCCCHH
Confidence 45699999888853 4568999999999998665543 23 44444433
No 173
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=20.05 E-value=4e+02 Score=21.76 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcC
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNG 103 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~ 103 (165)
.+++..|.+.|...|+..=-..+.+.-|.-.. +....-+.++=|+=+|-+...|.-+..|+..+++..++.+
T Consensus 92 peLa~~i~~~l~~~~v~a~~~~~gLDHGtwvp--L~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lree~ 163 (268)
T COG3384 92 PELAQRIVELLAKLGVPADAPSWGLDHGTWVP--LRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLREEG 163 (268)
T ss_pred HHHHHHHHHHhcccCccccCCccCCCccceee--ehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhCC
Confidence 57999999999988886544556666665433 4445567788888888888779999999999998765554
No 174
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=20.03 E-value=3.8e+02 Score=19.99 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHhcCC-cEEEeeCCCC-------CC-CCcc-hHHHHHHHhcCCeEEEEEecCCcCc
Q 031151 30 DNFTSHLYAALCRKK-IKTFIDDEEL-------RR-GDEI-SPALLNAIQGSKISVVIFSQDYASS 85 (165)
Q Consensus 30 ~~fv~~L~~~L~~~g-i~v~~d~~~~-------~~-G~~~-~~~i~~~I~~S~~~I~vlS~~~~~S 85 (165)
..++..+...|+..+ +.+..+..++ .. +.+- ...+.+.|..++ .+++.||.|..|
T Consensus 17 ~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD-~li~~tPeYn~s 81 (184)
T COG0431 17 RALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAAD-GLIIATPEYNGS 81 (184)
T ss_pred HHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCC-EEEEECCccCCC
Confidence 457888888888877 4444422122 11 1111 346667788888 556679999765
Done!