Query 031151
Match_columns 165
No_of_seqs 169 out of 1300
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:47:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 5.4E-52 1.9E-56 319.3 11.6 158 5-164 24-182 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 4.9E-51 1.7E-55 308.7 9.9 149 12-162 4-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 3.3E-37 1.1E-41 228.7 0.4 137 11-153 15-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 3.4E-32 1.2E-36 200.3 -3.9 135 11-150 5-145 (146)
5 2js7_A Myeloid differentiation 99.9 2.1E-27 7E-32 177.2 3.2 103 11-115 11-117 (160)
6 2j67_A TOLL like receptor 10; 99.9 4.9E-27 1.7E-31 178.0 3.4 104 10-115 29-136 (178)
7 1fyx_A TOLL-like receptor 2; b 99.9 2.2E-27 7.7E-32 175.0 1.4 105 13-119 2-111 (149)
8 1t3g_A X-linked interleukin-1 99.9 4.2E-26 1.4E-30 170.0 6.8 102 15-116 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-20 4.1E-25 170.3 6.7 103 12-116 666-775 (844)
10 1eiw_A Hypothetical protein MT 98.5 1.6E-07 5.6E-12 65.3 4.7 73 15-111 3-75 (111)
11 3hyn_A Putative signal transdu 97.4 0.00082 2.8E-08 50.3 8.8 84 24-112 27-118 (189)
12 2f62_A Nucleoside 2-deoxyribos 95.1 0.19 6.6E-06 36.6 9.3 77 30-110 26-105 (161)
13 2khz_A C-MYC-responsive protei 92.2 1.6 5.3E-05 31.6 9.7 91 12-110 7-110 (165)
14 3ehd_A Uncharacterized conserv 90.2 1.8 6E-05 31.5 8.1 76 30-110 19-104 (162)
15 4fyk_A Deoxyribonucleoside 5'- 89.2 2.2 7.4E-05 30.7 7.9 85 18-110 4-101 (152)
16 1s2d_A Purine trans deoxyribos 84.0 7.5 0.00026 28.1 8.5 86 18-110 9-116 (167)
17 2yvq_A Carbamoyl-phosphate syn 76.8 14 0.00047 25.8 7.7 63 19-83 27-107 (143)
18 1v95_A Nuclear receptor coacti 60.6 39 0.0013 23.4 7.6 46 29-76 20-66 (130)
19 1f8y_A Nucleoside 2-deoxyribos 59.5 13 0.00045 26.5 4.5 76 30-110 18-113 (157)
20 1byr_A Protein (endonuclease); 57.7 31 0.0011 23.3 6.2 37 32-69 15-51 (155)
21 2jug_A TUBC protein; docking d 52.8 12 0.00041 23.3 3.0 37 34-70 8-47 (78)
22 1wu7_A Histidyl-tRNA synthetas 52.0 39 0.0013 27.6 6.8 59 16-80 332-391 (434)
23 3ikl_A DNA polymerase subunit 50.1 22 0.00076 29.9 5.0 68 13-84 347-417 (459)
24 2fz5_A Flavodoxin; alpha/beta 49.3 52 0.0018 21.5 7.4 60 30-99 14-74 (137)
25 4g84_A Histidine--tRNA ligase, 46.2 54 0.0018 26.8 6.8 62 13-78 363-424 (464)
26 3net_A Histidyl-tRNA synthetas 45.4 34 0.0011 28.5 5.4 62 15-81 370-431 (465)
27 1evl_A Threonyl-tRNA synthetas 44.6 50 0.0017 26.7 6.3 60 15-79 297-356 (401)
28 4g85_A Histidine-tRNA ligase, 43.9 66 0.0023 27.0 7.1 63 13-79 416-478 (517)
29 2i4l_A Proline-tRNA ligase; al 43.0 17 0.00059 30.2 3.3 60 16-80 365-427 (458)
30 1sc3_B Interleukin-1 beta conv 40.9 7.8 0.00027 24.9 0.7 24 21-44 22-45 (88)
31 4e51_A Histidine--tRNA ligase; 39.0 47 0.0016 27.7 5.4 64 15-79 353-416 (467)
32 1htt_A Histidyl-tRNA synthetas 38.8 43 0.0015 27.2 5.0 59 15-79 326-387 (423)
33 1nj1_A PROR, proline-tRNA synt 38.5 24 0.00083 29.8 3.5 61 15-80 313-378 (501)
34 1qe0_A Histidyl-tRNA synthetas 37.9 36 0.0012 27.5 4.4 60 15-79 328-387 (420)
35 3lc0_A Histidyl-tRNA synthetas 37.0 68 0.0023 26.7 6.0 60 15-79 360-419 (456)
36 2ql9_B Caspase-7; cysteine pro 36.4 9 0.00031 24.9 0.4 29 15-43 9-46 (97)
37 3soz_A ORF 245 protein, cytopl 36.1 20 0.0007 27.5 2.5 73 5-87 11-84 (248)
38 3ro3_B Minsc, peptide of prote 36.0 24 0.00082 16.6 1.7 14 140-153 7-20 (22)
39 3hjn_A DTMP kinase, thymidylat 35.0 52 0.0018 23.7 4.5 33 19-51 1-35 (197)
40 2pw6_A Uncharacterized protein 34.9 47 0.0016 25.7 4.4 69 30-100 95-163 (271)
41 1qtn_B Caspase-8; apoptosis, d 34.8 8.6 0.00029 25.0 0.1 28 15-42 11-47 (95)
42 4a6h_A Phosphatidylinositol 4, 34.7 24 0.00082 23.7 2.4 20 138-157 101-120 (120)
43 2dko_B Caspase-3; low barrier 33.0 11 0.00038 24.9 0.4 30 13-42 13-51 (103)
44 2fg5_A RAB-22B, RAS-related pr 32.8 1.2E+02 0.0041 20.8 7.2 61 56-119 80-141 (192)
45 1bax_A M-PMV MA, M-PMV matrix 32.4 24 0.00084 23.1 2.0 19 30-48 9-27 (94)
46 1pyo_B Caspase-2; apoptosis, c 32.1 12 0.0004 24.8 0.4 27 16-42 14-49 (105)
47 2yry_A Pleckstrin homology dom 31.2 33 0.0011 22.1 2.6 19 138-156 103-121 (122)
48 1v5p_A Pleckstrin homology dom 30.3 34 0.0012 23.0 2.6 20 138-157 103-122 (126)
49 2cof_A Protein KIAA1914; PH do 29.8 37 0.0013 21.6 2.6 19 138-156 84-102 (107)
50 1qf6_A THRRS, threonyl-tRNA sy 29.7 96 0.0033 27.0 6.0 63 16-83 539-601 (642)
51 3ftb_A Histidinol-phosphate am 29.3 1.6E+02 0.0056 22.2 6.9 58 39-99 114-173 (361)
52 4hde_A SCO1/SENC family lipopr 28.7 87 0.003 21.6 4.7 56 56-116 21-79 (170)
53 2j3l_A Prolyl-tRNA synthetase; 28.2 80 0.0027 26.8 5.1 61 17-81 471-533 (572)
54 1z0j_A RAB-22, RAS-related pro 28.1 1.3E+02 0.0044 19.7 7.0 61 56-119 63-124 (170)
55 1hc7_A Prolyl-tRNA synthetase; 28.1 56 0.0019 27.4 4.1 60 16-80 287-352 (477)
56 2i2x_B MTAC, methyltransferase 27.9 1.7E+02 0.0058 22.0 6.5 86 18-114 125-212 (258)
57 2xzd_B Caspase-3; hydrolase-pr 27.7 17 0.00058 24.7 0.7 29 15-43 14-51 (118)
58 2zt5_A Glycyl-tRNA synthetase; 27.3 1.2E+02 0.0042 26.7 6.2 61 16-80 559-620 (693)
59 2coc_A FYVE, rhogef and PH dom 27.2 41 0.0014 22.2 2.5 18 138-155 89-106 (112)
60 3jx9_A Putative phosphoheptose 27.0 1.3E+02 0.0045 21.5 5.4 47 44-110 65-111 (170)
61 2i5f_A Pleckstrin; PH domain, 26.9 41 0.0014 21.1 2.5 17 138-154 92-108 (109)
62 1nyr_A Threonyl-tRNA synthetas 26.9 39 0.0013 29.4 3.0 58 17-79 546-604 (645)
63 1ati_A Glycyl-tRNA synthetase; 26.3 92 0.0031 26.2 5.1 60 16-80 398-460 (505)
64 2q62_A ARSH; alpha/beta, flavo 26.1 2.1E+02 0.0071 21.5 7.1 55 30-85 51-112 (247)
65 3hly_A Flavodoxin-like domain; 25.9 1.6E+02 0.0055 20.1 8.8 49 30-84 15-64 (161)
66 2p5s_A RAS and EF-hand domain 24.8 1.7E+02 0.0059 20.1 7.8 61 56-119 85-146 (199)
67 2d9v_A Pleckstrin homology dom 24.7 67 0.0023 21.2 3.3 22 138-159 97-118 (130)
68 3ial_A Prolyl-tRNA synthetase; 24.6 20 0.00068 30.7 0.6 33 30-62 322-356 (518)
69 4hvc_A Bifunctional glutamate/ 23.8 52 0.0018 28.1 3.1 33 30-62 331-364 (519)
70 1h4v_B Histidyl-tRNA synthetas 23.5 1.8E+02 0.0063 23.3 6.3 60 15-80 327-386 (421)
71 2efe_B Small GTP-binding prote 23.0 1.7E+02 0.0059 19.4 8.3 60 56-118 69-129 (181)
72 3rjm_B Caspase-2; caspase-2, c 23.0 21 0.0007 24.2 0.3 30 14-43 13-51 (117)
73 3a32_A Probable threonyl-tRNA 22.6 40 0.0014 28.0 2.1 59 16-79 338-404 (471)
74 3uh0_A Threonyl-tRNA synthetas 22.6 86 0.0029 26.1 4.2 61 16-80 345-421 (460)
75 2lul_A Tyrosine-protein kinase 22.3 54 0.0018 22.9 2.5 20 138-157 104-123 (164)
76 1x1g_A Pleckstrin 2; PH domain 22.2 55 0.0019 21.3 2.4 19 138-156 107-125 (129)
77 1wgq_A FYVE, rhogef and PH dom 22.2 57 0.0019 20.5 2.5 18 138-155 86-103 (109)
78 2fzv_A Putative arsenical resi 22.2 1.5E+02 0.005 23.0 5.2 55 30-85 75-137 (279)
79 3s83_A Ggdef family protein; s 22.2 2.2E+02 0.0074 20.9 6.1 44 34-83 142-185 (259)
80 1r2q_A RAS-related protein RAB 22.1 1.7E+02 0.0058 19.0 7.9 61 56-119 63-124 (170)
81 2fcj_A Small toprim domain pro 22.1 50 0.0017 22.4 2.2 73 21-98 30-103 (119)
82 1g5h_A Mitochondrial DNA polym 21.9 49 0.0017 27.6 2.5 60 17-79 339-402 (454)
83 1x05_A Pleckstrin; PH domain, 21.8 59 0.002 21.1 2.5 19 138-156 103-121 (129)
84 2d9y_A Pleckstrin homology dom 21.6 61 0.0021 20.5 2.5 19 138-156 92-110 (117)
85 2dkp_A Pleckstrin homology dom 21.6 58 0.002 21.0 2.5 19 138-156 102-120 (128)
86 1upq_A PEPP1; PH domain, phosp 21.4 61 0.0021 20.8 2.5 22 138-159 92-113 (123)
87 2h1v_A Ferrochelatase; rossman 21.1 1.5E+02 0.005 23.1 5.1 63 31-96 62-133 (310)
88 1v89_A Hypothetical protein KI 21.1 57 0.0019 20.6 2.3 19 138-156 95-113 (118)
89 2il1_A RAB12; G-protein, GDP, 20.9 2.1E+02 0.0071 19.6 7.8 29 56-84 83-112 (192)
90 1wjm_A Beta-spectrin III; PH d 20.9 57 0.002 21.1 2.3 18 138-155 100-117 (123)
91 2lpy_A Matrix protein P10; GAG 20.8 42 0.0014 23.1 1.5 21 30-50 8-28 (124)
92 3pid_A UDP-glucose 6-dehydroge 20.6 61 0.0021 26.9 2.8 50 26-75 347-400 (432)
93 3aj4_A Pleckstrin homology dom 20.5 66 0.0023 20.3 2.5 17 138-154 94-110 (112)
94 2hfv_A Hypothetical protein RP 20.2 71 0.0024 20.9 2.5 32 21-54 25-56 (97)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=5.4e-52 Score=319.32 Aligned_cols=158 Identities=48% Similarity=0.829 Sum_probs=141.9
Q ss_pred CCCCCCCCCCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcC
Q 031151 5 SSTAYSSSSSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 5 ~s~~~~~~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
|++++++.+.++|||||||+++|+|+.|+.+|+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|+|++|+.
T Consensus 24 s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~ 103 (204)
T 3ozi_A 24 STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYAD 103 (204)
T ss_dssp ----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGG
T ss_pred CCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccccc
Confidence 34445566889999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHh-cCCceeeEEeecCCchhhcccCcHHHHHHHhHHhcCCChHHHHHHHHHHHHhhcccCccccC
Q 031151 85 SKWCLNELVEILECKSK-NGQIVVPVFHRVDPSDIRKQNGSFRDAFVKHEKQFKRTPEKVQKWRVALTQASNLSGWDSRN 163 (165)
Q Consensus 85 S~wc~~El~~a~~~~~~-~~~~iiPV~~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~G~~~~~ 163 (165)
|.||++||..+++|.++ ++++||||||+|+|++|++|+|.||++|+++++++ +++++++||.||++|++++||++.+
T Consensus 104 S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~~ 181 (204)
T 3ozi_A 104 SKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGK 181 (204)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEECT
T ss_pred CcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecCC
Confidence 99999999999999865 57899999999999999999999999999999987 4789999999999999999999876
Q ss_pred C
Q 031151 164 I 164 (165)
Q Consensus 164 ~ 164 (165)
.
T Consensus 182 ~ 182 (204)
T 3ozi_A 182 N 182 (204)
T ss_dssp T
T ss_pred C
Confidence 3
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.9e-51 Score=308.68 Aligned_cols=149 Identities=48% Similarity=0.823 Sum_probs=127.5
Q ss_pred CCCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHH
Q 031151 12 SSSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNE 91 (165)
Q Consensus 12 ~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~E 91 (165)
+.+++|||||||+++|+|+.|+.+|+.+|+++||++|+|++++.+|+.+.++|.+||++|+++|+|+|+||++|.||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 34678999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceeeEEeecCCchhhcccCcHHHHHHHhHHhcCCChHHHHHHHHHHHHhhcccCcccc
Q 031151 92 LVEILECKSKNGQIVVPVFHRVDPSDIRKQNGSFRDAFVKHEKQFKRTPEKVQKWRVALTQASNLSGWDSR 162 (165)
Q Consensus 92 l~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v~~~~G~~~~ 162 (165)
|..+++|.+.++++||||||+|+|++|++|+|.||++|.+++++ .+.+++++||.||++|++++|+++.
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 99999999888999999999999999999999999999999988 4689999999999999999999874
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=3.3e-37 Score=228.72 Aligned_cols=137 Identities=20% Similarity=0.381 Sum_probs=119.8
Q ss_pred CCCCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHH
Q 031151 11 SSSSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLN 90 (165)
Q Consensus 11 ~~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~ 90 (165)
..+.++|||||||+++| ++.|+.+|+.+|+++|+++|+|.+++.+|+.|.++|.++|++|+++|+|+||+|++|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 45679999999999999 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceeeEEeecCCchhhcccCcHHHHHHHhHHhcCCChHHHHHHHHHHHHh
Q 031151 91 ELVEILECKSKNGQIVVPVFHRVDPSDIRKQNGSFRDAFVKHEKQFKRTPEKVQKWRVALTQA 153 (165)
Q Consensus 91 El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~f~~~f~~~~~~~~~~~~~~~~W~~al~~v 153 (165)
||..++++...++.+||||||+++|++|++|.|.||+.|...... ..+.++-+.|.++
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~-----~~~~~ia~~l~~l 151 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST-----KSVDEIVADLMAI 151 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc-----ccHHHHHHHHHHH
Confidence 999999887667789999999999999999999999988655443 3345555555544
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=3.4e-32 Score=200.35 Aligned_cols=135 Identities=18% Similarity=0.284 Sum_probs=92.8
Q ss_pred CCCCceecEEEecccCCCchhHHHHHHHHHhc--CCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhH
Q 031151 11 SSSSCKYDVFLSFRGEDTRDNFTSHLYAALCR--KKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWC 88 (165)
Q Consensus 11 ~~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~--~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc 88 (165)
...++.|||||||+++| ..||.+|..+|++ .|+++|+|++++.||+.+.++|.++|++|+++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 55788999999999999 5789999999998 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceeeEEeecCCchhhc----ccCcHHHHHHHhHHhcCCChHHHHHHHHHH
Q 031151 89 LNELVEILECKSKNGQIVVPVFHRVDPSDIRK----QNGSFRDAFVKHEKQFKRTPEKVQKWRVAL 150 (165)
Q Consensus 89 ~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~~----~~~~f~~~f~~~~~~~~~~~~~~~~W~~al 150 (165)
..|+..|+++......+||||++++++++++. ........ ....|....+.+.+|+.||
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~---~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRG---PDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTS---GGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccC---hHhhHHHHHHHHHHHHHhc
Confidence 99999999876333347889999888666543 32211111 1122222246788888875
No 5
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=2.1e-27 Score=177.21 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=93.2
Q ss_pred CCCCceecEEEecccCCCchhHHHHHHHHHhcC--CcEEEeeCCCCCCCCcchHHHHHHHh-cCCeEEEEEecCCcCchh
Q 031151 11 SSSSCKYDVFLSFRGEDTRDNFTSHLYAALCRK--KIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIFSQDYASSKW 87 (165)
Q Consensus 11 ~~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~~~~~G~~~~~~i~~~I~-~S~~~I~vlS~~~~~S~w 87 (165)
...++.|||||||+++| ..||.+|...|++. |+++|+|++++.||+.+.++|.++|+ +|+++|+|+||+|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 34578999999999999 68999999999984 69999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHHH-HhcCCceeeEEeecCC
Q 031151 88 CLNELVEILECK-SKNGQIVVPVFHRVDP 115 (165)
Q Consensus 88 c~~El~~a~~~~-~~~~~~iiPV~~~v~p 115 (165)
|..|+..|+++. .+++.+||||+|+.-+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999999875 4456799999997654
No 6
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.93 E-value=4.9e-27 Score=177.95 Aligned_cols=104 Identities=17% Similarity=0.351 Sum_probs=88.9
Q ss_pred CCCCCceecEEEecccCCCchhHHHH-HHHHHhc--CCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCch
Q 031151 10 SSSSSCKYDVFLSFRGEDTRDNFTSH-LYAALCR--KKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSK 86 (165)
Q Consensus 10 ~~~~~~~~DVFISy~~~D~~~~fv~~-L~~~L~~--~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~ 86 (165)
....++.|||||||+++| ..||.. |...|++ .|+++|+|++|+.||+.+.++|.++|++|+++|+|+||+|++|.
T Consensus 29 ~~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~ 106 (178)
T 2j67_A 29 QLKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNE 106 (178)
T ss_dssp -CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHT
T ss_pred ccCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccc
Confidence 356788999999999999 589975 9999998 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-HhcCCceeeEEeecCC
Q 031151 87 WCLNELVEILECK-SKNGQIVVPVFHRVDP 115 (165)
Q Consensus 87 wc~~El~~a~~~~-~~~~~~iiPV~~~v~p 115 (165)
||..|+..|+++. ++++.+||||+|+.-|
T Consensus 107 wc~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 107 WCHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGGTHHHHTTCC-------CEEEEESSCCC
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 9999999998643 4567799999996433
No 7
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=2.2e-27 Score=175.01 Aligned_cols=105 Identities=18% Similarity=0.332 Sum_probs=93.1
Q ss_pred CCceecEEEecccCCCchhHHHH-HHHHHhcC--CcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHH
Q 031151 13 SSCKYDVFLSFRGEDTRDNFTSH-LYAALCRK--KIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCL 89 (165)
Q Consensus 13 ~~~~~DVFISy~~~D~~~~fv~~-L~~~L~~~--gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~ 89 (165)
.++.|||||||+++| ..||.+ |...|++. |+++|+|++++.||+.+.++|.++|++|+++|+|+||+|++|.||.
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 467899999999999 489986 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHhcCCceeeEEee-cCCchhh
Q 031151 90 NELVEILEC-KSKNGQIVVPVFHR-VDPSDIR 119 (165)
Q Consensus 90 ~El~~a~~~-~~~~~~~iiPV~~~-v~p~~v~ 119 (165)
.|+..|+++ .++++.+||||+|+ +.+..+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999999854 35567899999995 4444443
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.92 E-value=4.2e-26 Score=169.95 Aligned_cols=102 Identities=20% Similarity=0.291 Sum_probs=90.6
Q ss_pred ceecEEEecccCCC---------chhHHHHHHH-HHh-cCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 15 CKYDVFLSFRGEDT---------RDNFTSHLYA-ALC-RKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 15 ~~~DVFISy~~~D~---------~~~fv~~L~~-~L~-~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|+|++|+.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999995 3578877554 699 799999999999999999999999999999999999999997
Q ss_pred -CchhHHHHHHHHHHHH-HhcCCceeeEEeecCCc
Q 031151 84 -SSKWCLNELVEILECK-SKNGQIVVPVFHRVDPS 116 (165)
Q Consensus 84 -~S~wc~~El~~a~~~~-~~~~~~iiPV~~~v~p~ 116 (165)
+|.||..|+..|+++. .+++.+||||+++..+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999886 56678999999875554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=170.26 Aligned_cols=103 Identities=18% Similarity=0.321 Sum_probs=93.1
Q ss_pred CCCceecEEEecccCCCchhHH-HHHHHHHhc-----CCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCc
Q 031151 12 SSSCKYDVFLSFRGEDTRDNFT-SHLYAALCR-----KKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASS 85 (165)
Q Consensus 12 ~~~~~~DVFISy~~~D~~~~fv-~~L~~~L~~-----~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S 85 (165)
...+.|||||||+++| ..|| ..|...|++ .|+++|++++|+.||+.+.++|.++|++||.+|+|+|++|++|
T Consensus 666 ~~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 4678999999999999 5787 779999985 5899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-HhcCCceeeEEeecCCc
Q 031151 86 KWCLNELVEILECK-SKNGQIVVPVFHRVDPS 116 (165)
Q Consensus 86 ~wc~~El~~a~~~~-~~~~~~iiPV~~~v~p~ 116 (165)
.||..|+..|+++. ++++.+||||+++..|.
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999998765 56778999999975543
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.46 E-value=1.6e-07 Score=65.35 Aligned_cols=73 Identities=7% Similarity=-0.018 Sum_probs=56.2
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHH
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVE 94 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~ 94 (165)
.+|.+||||+.+| -.+.|...|.+.|+..- | +.|+.|.++|++.++....|+||..|+..
T Consensus 3 ~~~~lFISh~~~d----~~~~L~~~l~~~~f~~~-~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE----DYRVFLERLEQSGLEWR-P---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH----HHHHHHHHHHHHCSCEE-E---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh----HHHHHHHHHhCCCCeee-c---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 5789999999987 24455555554455332 2 57899999999999999999999999988
Q ss_pred HHHHHHhcCCceeeEEe
Q 031151 95 ILECKSKNGQIVVPVFH 111 (165)
Q Consensus 95 a~~~~~~~~~~iiPV~~ 111 (165)
|. +.+.+||-|.-
T Consensus 63 A~----~~gkpIigV~~ 75 (111)
T 1eiw_A 63 AR----KSSKPIITVRP 75 (111)
T ss_dssp HT----TTTCCEEEECC
T ss_pred HH----HcCCCEEEEEc
Confidence 85 45668887764
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.44 E-value=0.00082 Score=50.34 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=63.0
Q ss_pred ccCCCchhHHHHHHHHHhcCCcEEEeeCCCCC-------C-CCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHH
Q 031151 24 RGEDTRDNFTSHLYAALCRKKIKTFIDDEELR-------R-GDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEI 95 (165)
Q Consensus 24 ~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~-------~-G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a 95 (165)
..+| ....+.|..--.+..+-.|.|-++.. . -..|...|.+.|..|..+|+++|++...|.|...|+..|
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 4455 34566666655555556667765442 2 345778999999999999999999999999999999998
Q ss_pred HHHHHhcCCceeeEEee
Q 031151 96 LECKSKNGQIVVPVFHR 112 (165)
Q Consensus 96 ~~~~~~~~~~iiPV~~~ 112 (165)
++ +.+.+||-|..+
T Consensus 105 i~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPD 118 (189)
T ss_dssp TT---TTCCCEEEEETT
T ss_pred HH---hcCCcEEEEECC
Confidence 62 356788888865
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=95.11 E-value=0.19 Score=36.56 Aligned_cols=77 Identities=9% Similarity=0.074 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCC-CCCcchHHHHHHHhcCCeEEEEEec--CCcCchhHHHHHHHHHHHHHhcCCce
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELR-RGDEISPALLNAIQGSKISVVIFSQ--DYASSKWCLNELVEILECKSKNGQIV 106 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~-~G~~~~~~i~~~I~~S~~~I~vlS~--~~~~S~wc~~El~~a~~~~~~~~~~i 106 (165)
..+...+...|+++|+.|++..++-. .+..+.+.-.++|++|+++|++++| .-..+.-+..|+..|.. .+.+|
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A----lgKPV 101 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA----LNKMV 101 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH----TTCEE
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH----CCCEE
Confidence 47889999999999999988542211 1223333447899999999999996 43445568889998864 44566
Q ss_pred eeEE
Q 031151 107 VPVF 110 (165)
Q Consensus 107 iPV~ 110 (165)
|-+.
T Consensus 102 i~l~ 105 (161)
T 2f62_A 102 LTFT 105 (161)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5543
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=92.20 E-value=1.6 Score=31.56 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=58.1
Q ss_pred CCCceecEEEecccC-CCc-hhHHHHHHHHHhcCCcEEEeeCCC----CCCCCc-------chHHHHHHHhcCCeEEEEE
Q 031151 12 SSSCKYDVFLSFRGE-DTR-DNFTSHLYAALCRKKIKTFIDDEE----LRRGDE-------ISPALLNAIQGSKISVVIF 78 (165)
Q Consensus 12 ~~~~~~DVFISy~~~-D~~-~~fv~~L~~~L~~~gi~v~~d~~~----~~~G~~-------~~~~i~~~I~~S~~~I~vl 78 (165)
..+++..|||+=.-. +.. ......+.+.|++.| .|+.+..- -..|.. +...-.+.|++|+++|+++
T Consensus 7 ~~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~ 85 (165)
T 2khz_A 7 GEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEV 85 (165)
T ss_dssp SSCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEEC
Confidence 344556799985333 111 224588999999999 88654321 112211 2233358899999999999
Q ss_pred ecCCcCchhHHHHHHHHHHHHHhcCCceeeEE
Q 031151 79 SQDYASSKWCLNELVEILECKSKNGQIVVPVF 110 (165)
Q Consensus 79 S~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~ 110 (165)
+ ..+.-+..|+..|.. .+.+|+-+.
T Consensus 86 ~---~~d~Gt~~EiGyA~a----lgKPVi~l~ 110 (165)
T 2khz_A 86 T---QPSLGVGYELGRAVA----LGKPILCLF 110 (165)
T ss_dssp S---SCCHHHHHHHHHHHH----TCSSEEEEE
T ss_pred C---CCCCCHHHHHHHHHH----CCCEEEEEE
Confidence 7 556778999999864 455666543
No 14
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=90.15 E-value=1.8 Score=31.46 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHhcC--CcEEEeeCCCCC----CCCcch----HHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHH
Q 031151 30 DNFTSHLYAALCRK--KIKTFIDDEELR----RGDEIS----PALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECK 99 (165)
Q Consensus 30 ~~fv~~L~~~L~~~--gi~v~~d~~~~~----~G~~~~----~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~ 99 (165)
..+...+.++|+++ |+.+|.-.++-. ++..+. +.-.++|++|+++|+++. ....+..+..|+..|..
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a-- 95 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYA-- 95 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHH--
Confidence 45778899999875 899988543321 233333 444577999999999995 33456788999999875
Q ss_pred HhcCCceeeEE
Q 031151 100 SKNGQIVVPVF 110 (165)
Q Consensus 100 ~~~~~~iiPV~ 110 (165)
.+.+|+.+.
T Consensus 96 --~gkPVi~~~ 104 (162)
T 3ehd_A 96 --KGIPVVALY 104 (162)
T ss_dssp --TTCCEEEEC
T ss_pred --CCCEEEEEE
Confidence 455666664
No 15
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=89.19 E-value=2.2 Score=30.72 Aligned_cols=85 Identities=22% Similarity=0.282 Sum_probs=54.0
Q ss_pred cEEEe--cccCCCchhHHHHHHHHHhcCCcEEEeeC---CCC-CCCC-------cchHHHHHHHhcCCeEEEEEecCCcC
Q 031151 18 DVFLS--FRGEDTRDNFTSHLYAALCRKKIKTFIDD---EEL-RRGD-------EISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 18 DVFIS--y~~~D~~~~fv~~L~~~L~~~gi~v~~d~---~~~-~~G~-------~~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
.|||+ .++.+....+...+.+.|++.| .|+-.. .++ ..|+ .+.+.-.++|++|+++|++++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46665 2232222467799999999999 675321 111 1122 145556688999999999988 55
Q ss_pred chhHHHHHHHHHHHHHhcCCceeeEE
Q 031151 85 SKWCLNELVEILECKSKNGQIVVPVF 110 (165)
Q Consensus 85 S~wc~~El~~a~~~~~~~~~~iiPV~ 110 (165)
+.-...|+..|.. .+.+|+-++
T Consensus 80 d~Gt~~EiG~A~a----lgkPV~~l~ 101 (152)
T 4fyk_A 80 SLGVGYELGRAVA----LGKPILCLF 101 (152)
T ss_dssp CHHHHHHHHHHHH----TTCCEEEEE
T ss_pred CCCHHHHHHHHHH----cCCeEEEEE
Confidence 7778889999875 344555554
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=83.96 E-value=7.5 Score=28.10 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=57.3
Q ss_pred cEEEec---ccCCCchhHHHHHHHHHhcC--CcEEEeeCCC-C--------CCC--------CcchHHHHHHHhcCCeEE
Q 031151 18 DVFLSF---RGEDTRDNFTSHLYAALCRK--KIKTFIDDEE-L--------RRG--------DEISPALLNAIQGSKISV 75 (165)
Q Consensus 18 DVFISy---~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~~-~--------~~G--------~~~~~~i~~~I~~S~~~I 75 (165)
.|||.= +..+ ..+...+.+.|+++ |+.+|.-.++ . ..| ..+.+.-.++|++|+++|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 477762 2222 46789999999999 8888875432 1 111 123344457899999999
Q ss_pred EEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEE
Q 031151 76 VIFSQDYASSKWCLNELVEILECKSKNGQIVVPVF 110 (165)
Q Consensus 76 ~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~ 110 (165)
+++...-. +.-+..|+..|.. .+.+|+-+.
T Consensus 87 A~ldg~~~-D~GTa~EiGyA~a----lgKPVv~l~ 116 (167)
T 1s2d_A 87 FLYDMDQL-DDGSAFXIGFMRA----MHKPVILVP 116 (167)
T ss_dssp EEEESSSC-CHHHHHHHHHHHH----TTCCEEEEE
T ss_pred EECCCCCC-CCCceeehhhHhh----CCCeEEEEE
Confidence 99987554 4567889998864 455666653
No 17
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=76.78 E-value=14 Score=25.76 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=41.4
Q ss_pred EEEecccCCCchhHHHHHHHHHhcCCcEEEe--------eCC-----CC---CCC-C-cchHHHHHHHhcCCeEEEEEec
Q 031151 19 VFLSFRGEDTRDNFTSHLYAALCRKKIKTFI--------DDE-----EL---RRG-D-EISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 19 VFISy~~~D~~~~fv~~L~~~L~~~gi~v~~--------d~~-----~~---~~G-~-~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
||||.+..| +.-...+...|.+.|++++- .+. .+ .-| + .-.++|.+.|++-.+-++|..|
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998776 44455677888888998772 111 11 112 2 0003688889999999999988
Q ss_pred CCc
Q 031151 81 DYA 83 (165)
Q Consensus 81 ~~~ 83 (165)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 18
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=60.63 E-value=39 Score=23.40 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHh-cCCeEEE
Q 031151 29 RDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVV 76 (165)
Q Consensus 29 ~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~-~S~~~I~ 76 (165)
...+|..|...|...|+++=+|.. .+++.+...|.++-. +.-++|+
T Consensus 20 ~~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lV 66 (130)
T 1v95_A 20 TKDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIV 66 (130)
T ss_dssp GGHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEE
Confidence 368999999999999999999763 236777777776544 4444444
No 19
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=59.54 E-value=13 Score=26.48 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHhcCCc----EEEeeCCCCC------------CC----CcchHHHHHHHhcCCeEEEEEecCCcCchhHH
Q 031151 30 DNFTSHLYAALCRKKI----KTFIDDEELR------------RG----DEISPALLNAIQGSKISVVIFSQDYASSKWCL 89 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi----~v~~d~~~~~------------~G----~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~ 89 (165)
......+...|+++|. .+|.-.++-. ++ ..+.+.-.++|++|+++|+++...- .+.-+.
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccHH
Confidence 4677899999999985 6666432111 11 1233444578999999999998433 345678
Q ss_pred HHHHHHHHHHHhcCCceeeEE
Q 031151 90 NELVEILECKSKNGQIVVPVF 110 (165)
Q Consensus 90 ~El~~a~~~~~~~~~~iiPV~ 110 (165)
.|+..|.. .+.+|+-+.
T Consensus 97 ~EiGyA~A----~gkPVv~~~ 113 (157)
T 1f8y_A 97 MELGYALS----QGKYVLLVI 113 (157)
T ss_dssp HHHHHHHH----TTCEEEEEE
T ss_pred HHHHHHHH----CCCeEEEEE
Confidence 89998864 455665554
No 20
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=57.73 E-value=31 Score=23.34 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHh
Q 031151 32 FTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQ 69 (165)
Q Consensus 32 fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~ 69 (165)
+...|.+.+.+..-.+++-.-.+ +.+.+.+.|.++.+
T Consensus 15 ~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~~ 51 (155)
T 1byr_A 15 ARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAKK 51 (155)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHHH
Confidence 44455555554443444332222 33344444444443
No 21
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=52.84 E-value=12 Score=23.26 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCcEEEeeCCCCC---CCCcchHHHHHHHhc
Q 031151 34 SHLYAALCRKKIKTFIDDEELR---RGDEISPALLNAIQG 70 (165)
Q Consensus 34 ~~L~~~L~~~gi~v~~d~~~~~---~G~~~~~~i~~~I~~ 70 (165)
..|...|.+.||..|.+.+.+. |-..+..++...+..
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~ 47 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGG 47 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHH
Confidence 4567889999999999987663 445566677666654
No 22
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=52.03 E-value=39 Score=27.60 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=39.5
Q ss_pred eecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHh-cCCeEEEEEec
Q 031151 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIFSQ 80 (165)
Q Consensus 16 ~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~-~S~~~I~vlS~ 80 (165)
.+||+|..-+.+. ...+..|...|.+.|++|-+|.++ ..+...+..|-. +.. .++|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~-~~iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGAD-FAVIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCS-EEEEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCC-EEEEECc
Confidence 4789866545443 567899999999999999998743 355555655543 444 4445543
No 23
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=50.08 E-value=22 Score=29.95 Aligned_cols=68 Identities=9% Similarity=-0.002 Sum_probs=39.6
Q ss_pred CCceecEEEecccCCCchhHHHHHHHHHhcCCcEEE--eeCC-CCCCCCcchHHHHHHHhcCCeEEEEEecCCcC
Q 031151 13 SSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTF--IDDE-ELRRGDEISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 13 ~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~--~d~~-~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
.+.+.-|.++-...|.-..+|..|++.|++.||+|. +|++ +-.+|. .+.++=..---.++++.++-++
T Consensus 347 AP~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGk----K~r~Ad~iGiPy~IiVG~kEle 417 (459)
T 3ikl_A 347 APIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQ----LYSKYDEMSILFTVLVTETTLE 417 (459)
T ss_dssp CSCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHH----HHHHHGGGTCSEEEEECTTSTT
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHH----HHHHHHHcCCCEEEEECchhhh
Confidence 344444544321123346789999999999999999 6664 334443 4444433333355666665443
No 24
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=49.33 E-value=52 Score=21.47 Aligned_cols=60 Identities=7% Similarity=0.053 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhcCCcEE-EeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHH
Q 031151 30 DNFTSHLYAALCRKKIKT-FIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECK 99 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v-~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~ 99 (165)
+.+|+.|.+.|+..|+.+ .++-.+.. ...+.+.+ .|++.+|-|..+.-...++..+++..
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~---------~~~l~~~d-~vi~g~p~y~~~~~~~~~~~~fl~~l 74 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTN---------VDDVASKD-VILLGCPAMGSEELEDSVVEPFFTDL 74 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCC---------HHHHHTCS-EEEEECCCBTTTBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCC---------HHHHhcCC-EEEEEccccCCCCCCHHHHHHHHHHh
Confidence 568999999998888765 33433221 12355665 56667888865432222355555543
No 25
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=46.19 E-value=54 Score=26.83 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=40.5
Q ss_pred CCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEE
Q 031151 13 SSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIF 78 (165)
Q Consensus 13 ~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vl 78 (165)
.....||+|...+.+. ...+-.|...|.++|+++-+|.. .+..+..++..|=..---.++|+
T Consensus 363 ~~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~vii 424 (464)
T 4g84_A 363 RTTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAII 424 (464)
T ss_dssp CSCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCCEEEEC
T ss_pred ccccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEE
Confidence 3456789998866653 45678999999999999977642 23355556665544323344444
No 26
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=45.38 E-value=34 Score=28.50 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=42.2
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
...||+|..-+++. ...+..|...|.++|++|-+|.++ ..+...+..|-..---.++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCEEEEECch
Confidence 45799986645442 467899999999999999998643 455556666655444455555543
No 27
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=44.61 E-value=50 Score=26.68 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=40.5
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEe
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS 79 (165)
..++|+|---+++ ....+..|+..|.+.|++|-+|.++ .++...+..|-..---.++|+.
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~~iiiG 356 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCG 356 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEEC
Confidence 3478887754443 3578899999999999999998743 4566666666443333444553
No 28
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=43.87 E-value=66 Score=26.95 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=41.0
Q ss_pred CCceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEe
Q 031151 13 SSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 13 ~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS 79 (165)
.....||||..-+.+. ...+-.|...|.++|+++-+|.. .+..+..++..|=..---.++|+.
T Consensus 416 ~~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG 478 (517)
T 4g85_A 416 RTTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIG 478 (517)
T ss_dssp CSCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCCEEEEEC
T ss_pred cCCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 3456899987755543 45788999999999999977642 233555666665443333445553
No 29
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=43.04 E-value=17 Score=30.19 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=37.4
Q ss_pred eecEEEeccc-C-CCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHh-cCCeEEEEEec
Q 031151 16 KYDVFLSFRG-E-DTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIFSQ 80 (165)
Q Consensus 16 ~~DVFISy~~-~-D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~-~S~~~I~vlS~ 80 (165)
.++|+|---. + +.....|..|+..|.+.|++|-+|.++- .+...+..|=. ... .++++.+
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~----~~g~k~~~ad~~g~p-~~iivG~ 427 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQ----RAGAKFATADLIGIP-WQIHVGP 427 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSC----CHHHHHHHHHHHTCS-EEEEECH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCC----CHHHHHHHHHhcCCC-EEEEECC
Confidence 3688776332 1 2235678999999999999999998643 44444444433 344 4444443
No 30
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=40.93 E-value=7.8 Score=24.92 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=15.4
Q ss_pred EecccCCCchhHHHHHHHHHhcCC
Q 031151 21 LSFRGEDTRDNFTSHLYAALCRKK 44 (165)
Q Consensus 21 ISy~~~D~~~~fv~~L~~~L~~~g 44 (165)
.|||+......|+..|.+.|++.+
T Consensus 22 ~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 22 VSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp CCCEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeEcCCCCCHHHHHHHHHHHHhC
Confidence 444444445668888888887643
No 31
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=38.99 E-value=47 Score=27.65 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=43.1
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEe
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS 79 (165)
...||+|..-+.+ ....+..+...|.++|++|-+|...-..+..+...+..|-+.---.++|+.
T Consensus 353 ~p~~V~Vip~~~~-~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG 416 (467)
T 4e51_A 353 EGVDVYVVHQGDA-AREQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFG 416 (467)
T ss_dssp CCCSEEEEECSHH-HHHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEcChH-HHHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEEC
Confidence 3468887654443 245788999999999999999863111256777777777655444555554
No 32
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=38.84 E-value=43 Score=27.15 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=39.6
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcC--CcEEEeeCCCCCCCCcchHHHHHHHh-cCCeEEEEEe
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRK--KIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIFS 79 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~--gi~v~~d~~~~~~G~~~~~~i~~~I~-~S~~~I~vlS 79 (165)
..+||+|..-+.+ ....+..|+..|.++ |++|-+|.++ .++...+..|-. ... .++++.
T Consensus 326 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p-~~iiiG 387 (423)
T 1htt_A 326 PVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKWGAR-VAVVLG 387 (423)
T ss_dssp CSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHHTCS-EEEEEC
T ss_pred CCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHcCCC-EEEEEC
Confidence 4578988775543 356789999999999 9999998743 355555555533 444 444443
No 33
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=38.48 E-value=24 Score=29.81 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=38.7
Q ss_pred ceecEEEecc-c-CC--CchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHh-cCCeEEEEEec
Q 031151 15 CKYDVFLSFR-G-ED--TRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIFSQ 80 (165)
Q Consensus 15 ~~~DVFISy~-~-~D--~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~-~S~~~I~vlS~ 80 (165)
..++|+|--- . .+ .-...|..|++.|++.|++|-+|.++- .+...+.++-. ... .++++.+
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~----s~g~k~~~a~~~G~p-~~iiiG~ 378 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDI----RAGRKYYEWEMRGVP-LRVEIGP 378 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSS----CHHHHHHHHHHEECS-EEEEECH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCC----CHHHHHHHHHhcCCC-EEEEECc
Confidence 3478877654 3 21 235688999999999999999998643 34444544433 344 4445544
No 34
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=37.87 E-value=36 Score=27.53 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=39.2
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEe
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS 79 (165)
..++|+|..-+.+ ....+..|...|.+.|++|-+|.++ ..+...+..+-..---.++++.
T Consensus 328 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iiig 387 (420)
T 1qe0_A 328 ENLDLFIVTMGDQ-ADRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQADRLGAKFTIVIG 387 (420)
T ss_dssp CCCSEEEEECHHH-HHHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCCEEEEEC
Confidence 3478887654433 2467889999999999999998743 3555556555443333455554
No 35
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=37.00 E-value=68 Score=26.67 Aligned_cols=60 Identities=12% Similarity=-0.032 Sum_probs=40.8
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEe
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS 79 (165)
...||||..-+++. ...+-.+...|.++|++|-++.. +.++..++..|-+.--..++++.
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEEC
Confidence 34788876655543 35678899999999999988752 23466666666655444566664
No 36
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=36.44 E-value=9 Score=24.94 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=16.7
Q ss_pred ceecEEEecccC---------CCchhHHHHHHHHHhcC
Q 031151 15 CKYDVFLSFRGE---------DTRDNFTSHLYAALCRK 43 (165)
Q Consensus 15 ~~~DVFISy~~~---------D~~~~fv~~L~~~L~~~ 43 (165)
..-|++++|+.. +.+..|+..|.+.|++.
T Consensus 9 ~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~ 46 (97)
T 2ql9_B 9 VEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEH 46 (97)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHh
Confidence 345777776643 33345666666666553
No 37
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=36.07 E-value=20 Score=27.52 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=44.6
Q ss_pred CCCCCCCCCCceecEEEecccCCCchhHHHHHHHHHhcCCcEE-EeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 5 SSTAYSSSSSCKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKT-FIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 5 ~s~~~~~~~~~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v-~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
.|++..+.+.+-||.|-+-.-.+ =+..|.++|+..|+.| |+.-++...+-+.. .+.+.+-+++|+ + ++.
T Consensus 11 esw~~~~~~~kg~~~~~~~~y~~----g~~~~~~aL~~~~~~V~~i~~~~~~~~fP~~---~~~L~~yDvIIl--~-d~~ 80 (248)
T 3soz_A 11 ESWHIHMIHSKGFDSFTSSKYEE----GADYLLSCLRQGNIDVDYMPAHIVQTRFPQT---AEALACYDAIVI--S-DIG 80 (248)
T ss_dssp CCCEEEEEEEETTEEEEEEEECC----CSHHHHHHHTTTTCEEEEEETTHHHHSCCCS---HHHHHTCSEEEE--E-SCC
T ss_pred CceeeeeeEeecccccccchhhh----hHHHHHHHHhcCCceeEEeCchhhhhhCCCC---hHHHhcCCEEEE--c-CCC
Confidence 56777788899999998653332 1456889999999986 44443322222222 155666665554 4 665
Q ss_pred Cchh
Q 031151 84 SSKW 87 (165)
Q Consensus 84 ~S~w 87 (165)
...+
T Consensus 81 ~~~~ 84 (248)
T 3soz_A 81 SNTF 84 (248)
T ss_dssp HHHH
T ss_pred cchh
Confidence 5443
No 38
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=36.00 E-value=24 Score=16.58 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHh
Q 031151 140 PEKVQKWRVALTQA 153 (165)
Q Consensus 140 ~~~~~~W~~al~~v 153 (165)
-+.+|+|++-|...
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 37799999988643
No 39
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=35.02 E-value=52 Score=23.75 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=25.4
Q ss_pred EEEecccCCC--chhHHHHHHHHHhcCCcEEEeeC
Q 031151 19 VFLSFRGEDT--RDNFTSHLYAALCRKKIKTFIDD 51 (165)
Q Consensus 19 VFISy~~~D~--~~~fv~~L~~~L~~~gi~v~~d~ 51 (165)
.||.+-|-|- +.+.+..|.+.|+++|+++..-.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3788877773 35678999999999999886643
No 40
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=34.91 E-value=47 Score=25.69 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHH
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKS 100 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~ 100 (165)
.++|.+|.+.|.+.|+.+-...+.+.-|--.. +...--+.++=|+-+|-+...+.--..+|..++...+
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vP--L~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lr 163 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALR 163 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHH--HHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhh--HHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 57999999999999997654444444343221 2222345566678888887667766678999986654
No 41
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=34.82 E-value=8.6 Score=25.03 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=16.8
Q ss_pred ceecEEEecccCC---------CchhHHHHHHHHHhc
Q 031151 15 CKYDVFLSFRGED---------TRDNFTSHLYAALCR 42 (165)
Q Consensus 15 ~~~DVFISy~~~D---------~~~~fv~~L~~~L~~ 42 (165)
..-|++++|+..+ .+..|+..|.+.|++
T Consensus 11 ~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~ 47 (95)
T 1qtn_B 11 DEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRE 47 (95)
T ss_dssp TTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHH
Confidence 3568888776443 234566666666654
No 42
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=34.68 E-value=24 Score=23.70 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031151 138 RTPEKVQKWRVALTQASNLS 157 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~~ 157 (165)
.+.+..++|.+||..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 45788999999999998753
No 43
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=32.95 E-value=11 Score=24.87 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=18.0
Q ss_pred CCceecEEEecccCC---------CchhHHHHHHHHHhc
Q 031151 13 SSCKYDVFLSFRGED---------TRDNFTSHLYAALCR 42 (165)
Q Consensus 13 ~~~~~DVFISy~~~D---------~~~~fv~~L~~~L~~ 42 (165)
-+..-|++++|+..+ ....|+..|.+.|++
T Consensus 13 iP~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~ 51 (103)
T 2dko_B 13 IPVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQ 51 (103)
T ss_dssp CCTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHH
Confidence 444578888877543 234466666666654
No 44
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=32.84 E-value=1.2e+02 Score=20.84 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=32.8
Q ss_pred CCC-cchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhh
Q 031151 56 RGD-EISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIR 119 (165)
Q Consensus 56 ~G~-~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~ 119 (165)
||. .+.......+..++.+|+|++..-..+ ..++...+.........-+|+++-....|+.
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQDS---FYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---HHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHHH---HHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 553 334444567889999999998654433 3333333333222222234555544566654
No 45
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=32.39 E-value=24 Score=23.12 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHhcCCcEEE
Q 031151 30 DNFTSHLYAALCRKKIKTF 48 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~ 48 (165)
..|+..|...|+++||+|=
T Consensus 9 q~fi~~lk~lLk~RgIkVk 27 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKVK 27 (94)
T ss_pred hHHHHHHHHHHHHcCeeec
Confidence 4799999999999999984
No 46
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=32.11 E-value=12 Score=24.85 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=16.3
Q ss_pred eecEEEecccCC---------CchhHHHHHHHHHhc
Q 031151 16 KYDVFLSFRGED---------TRDNFTSHLYAALCR 42 (165)
Q Consensus 16 ~~DVFISy~~~D---------~~~~fv~~L~~~L~~ 42 (165)
.-|++++|+..+ ....|+..|.+.|++
T Consensus 14 ~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~ 49 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSE 49 (105)
T ss_dssp SCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 567777776443 334566666666654
No 47
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.21 E-value=33 Score=22.12 Aligned_cols=19 Identities=26% Similarity=0.629 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031151 138 RTPEKVQKWRVALTQASNL 156 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~ 156 (165)
.+++..++|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4578899999999998764
No 48
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=30.34 E-value=34 Score=22.99 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.0
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031151 138 RTPEKVQKWRVALTQASNLS 157 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~~ 157 (165)
++++..++|..||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 45788999999999998764
No 49
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=29.77 E-value=37 Score=21.56 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031151 138 RTPEKVQKWRVALTQASNL 156 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~ 156 (165)
.+++..++|..||..++..
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 4578899999999988764
No 50
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=29.72 E-value=96 Score=26.98 Aligned_cols=63 Identities=10% Similarity=0.103 Sum_probs=41.7
Q ss_pred eecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 16 KYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 16 ~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
.++|+|---+.+ ....|..|++.|++.|++|-+|.++ ..+...+.++=..---.++|+.++-+
T Consensus 539 P~qv~vipi~~~-~~~~a~~v~~~L~~~Gi~v~~D~~~----~~~g~kir~a~~~g~p~~ivvG~~E~ 601 (642)
T 1qf6_A 539 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCGDKEV 601 (642)
T ss_dssp SSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEECTTTG
T ss_pred CceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECchhh
Confidence 367876543332 3578999999999999999999854 45555666554433335666665533
No 51
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=29.30 E-value=1.6e+02 Score=22.18 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=33.1
Q ss_pred HHhcCCcEEE-eeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcC-chhHHHHHHHHHHHH
Q 031151 39 ALCRKKIKTF-IDDEELRRGDEISPALLNAIQGSKISVVIFSQDYAS-SKWCLNELVEILECK 99 (165)
Q Consensus 39 ~L~~~gi~v~-~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~-S~wc~~El~~a~~~~ 99 (165)
.++..|.++. ++.. -..+-.+ +.+.+++.+ ...|++.+|+... ..+...++..+.+..
T Consensus 114 ~~~~~g~~~~~~~~~-~~~~~~~-~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~ 173 (361)
T 3ftb_A 114 NAKKHGVSVVFSYLD-ENMCIDY-EDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLA 173 (361)
T ss_dssp HHHHTTCEEEEEECC-TTSCCCH-HHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHH
T ss_pred HHHHcCCeEEEeecC-cccCCCH-HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHh
Confidence 3445677653 3321 1112222 678888888 6677788887643 344556666666543
No 52
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=28.71 E-value=87 Score=21.63 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHH---HHHHHHHhcCCceeeEEeecCCc
Q 031151 56 RGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELV---EILECKSKNGQIVVPVFHRVDPS 116 (165)
Q Consensus 56 ~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~---~a~~~~~~~~~~iiPV~~~v~p~ 116 (165)
-|..+.- ..++. +++|+.|--..+ ..||..++. .+.+..+..+..|..|+..++|.
T Consensus 21 ~G~~v~l---~d~~G-k~vll~F~~t~C-p~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 21 DGKPFGT---KDLKG-KVWVADFMFTNC-QTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp TSCEEEH---HHHTT-SCEEEEEECTTC-SSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCEEeH---HHhCC-CEEEEEEECCCC-CCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 4665542 23444 444444432222 237865544 44444444566677788777764
No 53
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=28.18 E-value=80 Score=26.79 Aligned_cols=61 Identities=8% Similarity=0.151 Sum_probs=39.9
Q ss_pred ecEEEeccc-C-CCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecC
Q 031151 17 YDVFLSFRG-E-DTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQD 81 (165)
Q Consensus 17 ~DVFISy~~-~-D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~ 81 (165)
++|+|---+ + +.....+..|+..|.+.|++|-+|.++ ..+...+..|-..---.++|+.++
T Consensus 471 ~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~----~~~g~k~~~a~~~g~p~~iivG~~ 533 (572)
T 2j3l_A 471 FDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRN----ERAGVKFADADLIGCPIRITVGKK 533 (572)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHCCSEEEEECGG
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCC----CCHhHHHHHHHhcCCCEEEEEccc
Confidence 788876543 2 112467899999999999999999753 355556665544333355555554
No 54
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=28.14 E-value=1.3e+02 Score=19.73 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCC-cchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhh
Q 031151 56 RGD-EISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIR 119 (165)
Q Consensus 56 ~G~-~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~ 119 (165)
||. .+.......+..++.+|+|++..-..+ ..++...++........-+||++-....|+.
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 63 AGLERFRALAPMYYRGSAAAIIVYDITKEET---FSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---HHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred CCchhhhcccHhhCcCCCEEEEEEECcCHHH---HHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 553 334444567889999999998654333 3333333333222333445666544555554
No 55
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=28.06 E-value=56 Score=27.36 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=37.8
Q ss_pred eecEEEecccC-C---CchhHHHHHHHHHhcCCcEEEeeCC-CCCCCCcchHHHHHHHh-cCCeEEEEEec
Q 031151 16 KYDVFLSFRGE-D---TRDNFTSHLYAALCRKKIKTFIDDE-ELRRGDEISPALLNAIQ-GSKISVVIFSQ 80 (165)
Q Consensus 16 ~~DVFISy~~~-D---~~~~fv~~L~~~L~~~gi~v~~d~~-~~~~G~~~~~~i~~~I~-~S~~~I~vlS~ 80 (165)
.++|+|---+. | .-...|..|.+.|++.|++|-+|.+ +-. +...+.++-. ... .++++.+
T Consensus 287 P~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s----~g~k~~~a~~~G~p-~~iiiG~ 352 (477)
T 1hc7_A 287 PIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHT----PGYKFHEWELKGVP-FRVELGP 352 (477)
T ss_dssp SCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSC----HHHHHHHHHHTTCS-EEEEECH
T ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCC----HHHHHHHHhhcCCC-EEEEECc
Confidence 47887765433 2 1246789999999999999999985 433 4444444433 344 4444443
No 56
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=27.93 E-value=1.7e+02 Score=22.03 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=50.3
Q ss_pred cEEEecccCCCchhHH-HHHHHHHhcCCcEEE-eeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHH
Q 031151 18 DVFLSFRGEDTRDNFT-SHLYAALCRKKIKTF-IDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEI 95 (165)
Q Consensus 18 DVFISy~~~D~~~~fv-~~L~~~L~~~gi~v~-~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a 95 (165)
-|.+.--..|. +.+- ..+...|+.+|+.|. +.. +. | .+++.+++.+.+.-++.+|-.-..+ +..+...
T Consensus 125 ~vlla~~~gd~-HdiG~~iva~~L~~~G~~Vi~LG~-~v-p----~e~l~~~~~~~~~d~V~lS~l~~~~---~~~~~~~ 194 (258)
T 2i2x_B 125 TVVCHVAEGDV-HDIGKNIVTALLRANGYNVVDLGR-DV-P----AEEVLAAVQKEKPIMLTGTALMTTT---MYAFKEV 194 (258)
T ss_dssp EEEEEECTTCC-CCHHHHHHHHHHHHTTCEEEEEEE-EC-C----SHHHHHHHHHHCCSEEEEECCCTTT---TTHHHHH
T ss_pred eEEEEeCCCCc-cHHHHHHHHHHHHHCCCEEEECCC-CC-C----HHHHHHHHHHcCCCEEEEEeeccCC---HHHHHHH
Confidence 35554444454 3454 556677899999985 443 22 2 2466677777777777777654443 2344444
Q ss_pred HHHHHhcCCceeeEEeecC
Q 031151 96 LECKSKNGQIVVPVFHRVD 114 (165)
Q Consensus 96 ~~~~~~~~~~iiPV~~~v~ 114 (165)
++..++.+.. +||+.+..
T Consensus 195 i~~l~~~~~~-~~v~vGG~ 212 (258)
T 2i2x_B 195 NDMLLENGIK-IPFACGGG 212 (258)
T ss_dssp HHHHHTTTCC-CCEEEEST
T ss_pred HHHHHhcCCC-CcEEEECc
Confidence 4444444445 89998754
No 57
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=27.68 E-value=17 Score=24.69 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=17.4
Q ss_pred ceecEEEecccCC---------CchhHHHHHHHHHhcC
Q 031151 15 CKYDVFLSFRGED---------TRDNFTSHLYAALCRK 43 (165)
Q Consensus 15 ~~~DVFISy~~~D---------~~~~fv~~L~~~L~~~ 43 (165)
..-|++++|+..+ ....|+..|.+.|++.
T Consensus 14 ~~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~ 51 (118)
T 2xzd_B 14 VEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQY 51 (118)
T ss_dssp TTTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHh
Confidence 3467777766432 3355777777777653
No 58
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=27.30 E-value=1.2e+02 Score=26.72 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=41.0
Q ss_pred eecEEEecccCC-CchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 16 KYDVFLSFRGED-TRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 16 ~~DVFISy~~~D-~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
.++|+|---+.+ .-...|..|...|++.|++|.+|.++ .++...+.++=..---.++++.+
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~----~sigkk~k~Ad~~G~p~~IiIG~ 620 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSS----GSIGRRYARTDEIGVAFGVTIDF 620 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCC----SCHHHHHHHHHHTTCCEEEEECH
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEEcc
Confidence 378887654443 23578999999999999999998743 35555666554443345555544
No 59
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.25 E-value=41 Score=22.23 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031151 138 RTPEKVQKWRVALTQASN 155 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~ 155 (165)
.+++..++|.+||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 558899999999998764
No 60
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=27.01 E-value=1.3e+02 Score=21.47 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=28.4
Q ss_pred CcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEE
Q 031151 44 KIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVF 110 (165)
Q Consensus 44 gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~ 110 (165)
|+..+.+..++.+|| .++|+|+...+.. ........+++|..+|-|-
T Consensus 65 ~~~~~~~~~~i~~~D---------------~vii~S~Sg~n~~-----~ie~A~~ake~G~~vIaIT 111 (170)
T 3jx9_A 65 RVTKIKDHKTLHAVD---------------RVLIFTPDTERSD-----LLASLARYDAWHTPYSIIT 111 (170)
T ss_dssp TEEECCTTCCCCTTC---------------EEEEEESCSCCHH-----HHHHHHHHHHHTCCEEEEE
T ss_pred chhhhhhcCCCCCCC---------------EEEEEeCCCCCHH-----HHHHHHHHHHCCCcEEEEe
Confidence 566666655666666 6778888887742 2222223345677777775
No 61
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=26.89 E-value=41 Score=21.06 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHHHhh
Q 031151 138 RTPEKVQKWRVALTQAS 154 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~ 154 (165)
.+++..++|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45788999999999875
No 62
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=26.86 E-value=39 Score=29.36 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=38.1
Q ss_pred ecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHh-cCCeEEEEEe
Q 031151 17 YDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQ-GSKISVVIFS 79 (165)
Q Consensus 17 ~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~-~S~~~I~vlS 79 (165)
++|+|---+.+.....|..|++.|++.|++|-+|.++ ..+...+.+|-. +.. .++|+.
T Consensus 546 ~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~----~~~g~k~~~a~~~g~p-~~iivG 604 (645)
T 1nyr_A 546 KQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRN----EKMGYKIREAQMQKIP-YQIVVG 604 (645)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSS----CCHHHHHHHHHHHTCS-EEEEEC
T ss_pred ceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECCC----CCHHHHHHHHHhcCCC-EEEEEc
Confidence 6777654331223578899999999999999999753 455556665533 444 444443
No 63
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=26.32 E-value=92 Score=26.24 Aligned_cols=60 Identities=13% Similarity=0.013 Sum_probs=39.7
Q ss_pred eecEEEecccC-C-CchhHHHHHHHHHhcCC-cEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 16 KYDVFLSFRGE-D-TRDNFTSHLYAALCRKK-IKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 16 ~~DVFISy~~~-D-~~~~fv~~L~~~L~~~g-i~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
.++|+|---+. + .-...|..|+..|++.| ++|-+|.+ .++...+.++=..---.++++.+
T Consensus 398 P~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~-----~sig~k~~~ad~~g~p~~iivG~ 460 (505)
T 1ati_A 398 PIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT-----GNIGKAYRRHDEVGTPFAVTVDY 460 (505)
T ss_dssp SCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC-----SCHHHHHHHHHHTTCSEEEEECH
T ss_pred CceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC-----CCHHHHHHHHHHCCCCEEEEECh
Confidence 47888765443 1 12567899999999999 99999863 35666666554443334555543
No 64
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=26.08 E-value=2.1e+02 Score=21.46 Aligned_cols=55 Identities=13% Similarity=-0.084 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhcCCcEEE-eeCCCCC--CCC----cchHHHHHHHhcCCeEEEEEecCCcCc
Q 031151 30 DNFTSHLYAALCRKKIKTF-IDDEELR--RGD----EISPALLNAIQGSKISVVIFSQDYASS 85 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~-~d~~~~~--~G~----~~~~~i~~~I~~S~~~I~vlS~~~~~S 85 (165)
..+++.+.+.|++.|+.+- +|-.++. ..+ .-...+.+.|.+++. |++.||-|..+
T Consensus 51 ~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~-iI~~sP~Yn~s 112 (247)
T 2q62_A 51 RLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEG-QVWVSPERHGA 112 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSE-EEEEEECSSSS
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCE-EEEEeCCCCCC
Confidence 3467778888887888654 3433332 111 113567788999994 55678888754
No 65
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=25.89 E-value=1.6e+02 Score=20.12 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhcCCcEEEe-eCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcC
Q 031151 30 DNFTSHLYAALCRKKIKTFI-DDEELRRGDEISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~-d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
+..|+.|.+.|...|+.+-+ |-.+ .-.+.+...+.+++ .|++-||.|..
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~~~~-----~~~~~~~~~~~~~d-~ii~Gspty~g 64 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVDLRA-----VDPQELIEAVSSAR-GIVLGTPPSQP 64 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTT-----CCHHHHHHHHHHCS-EEEEECCBSSC
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCC-----CCHHHHHHHHHhCC-EEEEEcCCcCC
Confidence 57899999999999986533 3221 12345555667777 56667888864
No 66
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=24.78 E-value=1.7e+02 Score=20.10 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=31.6
Q ss_pred CC-CcchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhh
Q 031151 56 RG-DEISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIR 119 (165)
Q Consensus 56 ~G-~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~ 119 (165)
|| +.+.......+..++.+|+|++..-.. ...++...++........-+||++-....|+.
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEK---SFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 55 445555667789999999999865333 23333332222221111224555544555553
No 67
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.66 E-value=67 Score=21.22 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=17.8
Q ss_pred CChHHHHHHHHHHHHhhcccCc
Q 031151 138 RTPEKVQKWRVALTQASNLSGW 159 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~~G~ 159 (165)
.+++..++|..||..+...+..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 4578899999999999876543
No 68
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=24.60 E-value=20 Score=30.69 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhcC-CcEEEeeCC-CCCCCCcchH
Q 031151 30 DNFTSHLYAALCRK-KIKTFIDDE-ELRRGDEISP 62 (165)
Q Consensus 30 ~~fv~~L~~~L~~~-gi~v~~d~~-~~~~G~~~~~ 62 (165)
...+..|++.|.+. |++|-+|.+ +-.+|..+.+
T Consensus 322 ~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ 356 (518)
T 3ial_A 322 LGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYY 356 (518)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHH
Confidence 46789999999999 999999987 6677766554
No 69
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=23.76 E-value=52 Score=28.06 Aligned_cols=33 Identities=12% Similarity=-0.022 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHhcCCcEEEeeCCCC-CCCCcchH
Q 031151 30 DNFTSHLYAALCRKKIKTFIDDEEL-RRGDEISP 62 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d~~~~-~~G~~~~~ 62 (165)
...|..|++.|.+.|++|-+|.++- .+|..+.+
T Consensus 331 ~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ 364 (519)
T 4hvc_A 331 IAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNH 364 (519)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
Confidence 4678999999999999999998763 56665543
No 70
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=23.52 E-value=1.8e+02 Score=23.25 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=36.9
Q ss_pred ceecEEEecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEec
Q 031151 15 CKYDVFLSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQ 80 (165)
Q Consensus 15 ~~~DVFISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~ 80 (165)
..+||+|..-+.+ ....+..|+..|.++ ++|-+|.++ ..+...+..|-..---.++++.+
T Consensus 327 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~-i~v~~d~~~----~~~~~~~~~a~~~g~p~~iivG~ 386 (421)
T 1h4v_B 327 KGPDLYLIPLTEE-AVAEAFYLAEALRPR-LRAEYALAP----RKPAKGLEEALKRGAAFAGFLGE 386 (421)
T ss_pred CCCeEEEEECChH-HHHHHHHHHHHHHhc-CEEEEecCC----CCHHHHHHHHHhCCCCEEEEECc
Confidence 4578887554443 246788899999988 999888643 34444555443332334445544
No 71
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=23.02 E-value=1.7e+02 Score=19.42 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=31.9
Q ss_pred CCC-cchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchh
Q 031151 56 RGD-EISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDI 118 (165)
Q Consensus 56 ~G~-~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v 118 (165)
||. .+.......++.++.+|+|++..- .....++...+.........-+|+++-....|+
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 129 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVTN---QASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcc
Confidence 564 334444567889999999998653 333344444443332222233455544445554
No 72
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=22.97 E-value=21 Score=24.24 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=17.9
Q ss_pred CceecEEEecccCC---------CchhHHHHHHHHHhcC
Q 031151 14 SCKYDVFLSFRGED---------TRDNFTSHLYAALCRK 43 (165)
Q Consensus 14 ~~~~DVFISy~~~D---------~~~~fv~~L~~~L~~~ 43 (165)
+..-|++++|+..+ ....|+..|.+.|++.
T Consensus 13 P~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~ 51 (117)
T 3rjm_B 13 PTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSER 51 (117)
T ss_dssp CSSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHh
Confidence 34578888876543 2345666666666543
No 73
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=22.64 E-value=40 Score=28.05 Aligned_cols=59 Identities=8% Similarity=0.068 Sum_probs=36.7
Q ss_pred eecEEEecccC-----CCchhHHHHHHHHHhcCCcEEEeeC-CCCCCCCcchHHHHHHH--hcCCeEEEEEe
Q 031151 16 KYDVFLSFRGE-----DTRDNFTSHLYAALCRKKIKTFIDD-EELRRGDEISPALLNAI--QGSKISVVIFS 79 (165)
Q Consensus 16 ~~DVFISy~~~-----D~~~~fv~~L~~~L~~~gi~v~~d~-~~~~~G~~~~~~i~~~I--~~S~~~I~vlS 79 (165)
.++|+|-.-+. +.....|..|+..|.+.|++|-+|. ++- .+...+..+- .... .++++.
T Consensus 338 p~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~----~~g~k~~~a~~~~gip-~~iiiG 404 (471)
T 3a32_A 338 PIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKT----GLSSDVRHIESTAKPA-VNVFIG 404 (471)
T ss_dssp SCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEETT----THHHHHHHHHHTTCCS-EEEEEC
T ss_pred CceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCCC----CHHHHHHHHHHhcCCC-EEEEEC
Confidence 36777665331 2225678999999999999999987 443 3444454444 3444 444444
No 74
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=22.57 E-value=86 Score=26.10 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=38.9
Q ss_pred eecEEEecccCCC--chhHHHHHHHHHhcC--------------CcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEe
Q 031151 16 KYDVFLSFRGEDT--RDNFTSHLYAALCRK--------------KIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 16 ~~DVFISy~~~D~--~~~fv~~L~~~L~~~--------------gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS 79 (165)
.++|+|---+.+. -...|..|.+.|++. |++|-+|.++ ..+...+.+|-..---.++|+.
T Consensus 345 P~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~----~~lg~k~r~Ad~~g~p~~ivvG 420 (460)
T 3uh0_A 345 PYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRN----EPVGYRIKSAILKNYSYLIIVG 420 (460)
T ss_dssp SCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCS----SCHHHHHHHHHHHTCSEEEEEC
T ss_pred CceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCC----CCHHHHHHHHHHcCCCEEEEEc
Confidence 4677765433321 246889999999988 9999999864 3445555555444334555554
Q ss_pred c
Q 031151 80 Q 80 (165)
Q Consensus 80 ~ 80 (165)
+
T Consensus 421 ~ 421 (460)
T 3uh0_A 421 D 421 (460)
T ss_dssp H
T ss_pred c
Confidence 3
No 75
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=22.32 E-value=54 Score=22.94 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=16.4
Q ss_pred CChHHHHHHHHHHHHhhccc
Q 031151 138 RTPEKVQKWRVALTQASNLS 157 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~~ 157 (165)
.++++.++|..||.++..-.
T Consensus 104 ~s~~e~~~Wi~aL~~~i~~n 123 (164)
T 2lul_A 104 PSPQSRDLWVKKLKEEIKNN 123 (164)
T ss_dssp SSHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHC
Confidence 45788999999999998643
No 76
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.24 E-value=55 Score=21.26 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031151 138 RTPEKVQKWRVALTQASNL 156 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~ 156 (165)
.+++..++|..||..++.-
T Consensus 107 ~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 107 SSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp SSHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4578899999999998753
No 77
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=22.24 E-value=57 Score=20.54 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=14.9
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031151 138 RTPEKVQKWRVALTQASN 155 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~ 155 (165)
.+++..++|..||..++.
T Consensus 86 ~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 86 DDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 457889999999998764
No 78
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=22.21 E-value=1.5e+02 Score=22.97 Aligned_cols=55 Identities=15% Similarity=-0.091 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHhcCCcEEE-eeCCCCC--CCC-----cchHHHHHHHhcCCeEEEEEecCCcCc
Q 031151 30 DNFTSHLYAALCRKKIKTF-IDDEELR--RGD-----EISPALLNAIQGSKISVVIFSQDYASS 85 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~-~d~~~~~--~G~-----~~~~~i~~~I~~S~~~I~vlS~~~~~S 85 (165)
..+++.+.+.|++.|..+- +|-.++. .++ .-...+.+.|..++. |++.||-|..+
T Consensus 75 ~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADg-iV~aSP~Yn~s 137 (279)
T 2fzv_A 75 RLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEG-QVWCSPERHGQ 137 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSE-EEEEEEEETTE
T ss_pred HHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCe-EEEEcCccccC
Confidence 3467777788887888653 4544432 111 113567788899994 55678888654
No 79
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=22.15 E-value=2.2e+02 Score=20.89 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCc
Q 031151 34 SHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYA 83 (165)
Q Consensus 34 ~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~ 83 (165)
......|++.|+++.+|+ +-.|.. -...+..-..-.+-+.+.++
T Consensus 142 ~~~l~~l~~~G~~ialDd--fG~g~s----sl~~L~~l~~d~iKiD~~~v 185 (259)
T 3s83_A 142 AVILKTLRDAGAGLALDD--FGTGFS----SLSYLTRLPFDTLKIDRYFV 185 (259)
T ss_dssp HHHHHHHHHHTCEEEEEC--C---CH----HHHHHHHSCCCEEEECHHHH
T ss_pred HHHHHHHHHCCCEEEEEC--CCCCch----hHHHHHhCCCCEEEECHHHH
Confidence 344466677788888886 445543 23455666677777777665
No 80
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=22.11 E-value=1.7e+02 Score=19.03 Aligned_cols=61 Identities=7% Similarity=0.123 Sum_probs=32.6
Q ss_pred CCC-cchHHHHHHHhcCCeEEEEEecCCcCchhHHHHHHHHHHHHHhcCCceeeEEeecCCchhh
Q 031151 56 RGD-EISPALLNAIQGSKISVVIFSQDYASSKWCLNELVEILECKSKNGQIVVPVFHRVDPSDIR 119 (165)
Q Consensus 56 ~G~-~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~ 119 (165)
||. .+.......+..++.+|+|++..-.. ...++...+.........-+||++-....|+.
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEE---SFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp CCSGGGGGGHHHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred CCcHHhhhhhHHhccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 554 33444556788999999999865433 33444433333222222335555434455553
No 81
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=22.06 E-value=50 Score=22.44 Aligned_cols=73 Identities=12% Similarity=0.184 Sum_probs=46.6
Q ss_pred EecccCCCchhHHHHHHHHHhcCCcEEEeeCCCCCCCCcchHHHHHHHhcCCeEEEEEecCCcCchhH-HHHHHHHHHH
Q 031151 21 LSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEELRRGDEISPALLNAIQGSKISVVIFSQDYASSKWC-LNELVEILEC 98 (165)
Q Consensus 21 ISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS~~~~~S~wc-~~El~~a~~~ 98 (165)
|.-.+. ....-...|..+.+.+|+-+|.|.+ .+|+.+...|.+.+..+. ...+.+.+..=.-+ .++|..|+..
T Consensus 30 I~t~Gs-i~~~~l~~I~~~~~~r~VIi~TD~D--~~GekIRk~i~~~lp~~~--hafi~r~~~gVE~a~~~~I~~aL~~ 103 (119)
T 2fcj_A 30 VCTNGT-ISDARLEELADELEGYDVYLLADAD--EAGEKLRRQFRRMFPEAE--HLYIDRAYREVAAAPIWHLAQVLLR 103 (119)
T ss_dssp EECCSC-CCHHHHHHHHHHTTTSEEEEECCSS--HHHHHHHHHHHHHCTTSE--EECCCTTTCSTTTSCHHHHHHHHHH
T ss_pred EEeCCc-cCHHHHHHHHHHhcCCCEEEEECCC--ccHHHHHHHHHHHCCCCc--EEeccCCccCcccCCHHHHHHHHHh
Confidence 333344 3344456777777888999998874 588888888888887774 45556655422222 3566666654
No 82
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=21.91 E-value=49 Score=27.58 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=37.1
Q ss_pred ecEEEe-ccc-CCCchhHHHHHHHHHhcCCcEEE--eeCCCCCCCCcchHHHHHHHhcCCeEEEEEe
Q 031151 17 YDVFLS-FRG-EDTRDNFTSHLYAALCRKKIKTF--IDDEELRRGDEISPALLNAIQGSKISVVIFS 79 (165)
Q Consensus 17 ~DVFIS-y~~-~D~~~~fv~~L~~~L~~~gi~v~--~d~~~~~~G~~~~~~i~~~I~~S~~~I~vlS 79 (165)
++|+|- ..+ .+.-...|..|++.|++.|++|. +|.+ .+..+...+.++=..---.++|+.
T Consensus 339 ~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~~~~Ddr---~~~sigkk~r~Ad~~GiP~~IiVG 402 (454)
T 1g5h_A 339 IKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSET---VHSSLEQLHSKYDEMSVLFSVLVT 402 (454)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSC---CCSCHHHHHHHHHHTTCSEEEEEC
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCC---CCCCHHHHHHHHHHcCCCEEEEEC
Confidence 788776 433 12235688999999999999996 6763 134555566555433333444443
No 83
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=21.75 E-value=59 Score=21.14 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031151 138 RTPEKVQKWRVALTQASNL 156 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~ 156 (165)
.+++..++|..||..++..
T Consensus 103 ~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 103 ATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp SSHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHc
Confidence 4578899999999998764
No 84
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.60 E-value=61 Score=20.48 Aligned_cols=19 Identities=26% Similarity=0.629 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031151 138 RTPEKVQKWRVALTQASNL 156 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~ 156 (165)
.+++..++|..||..+...
T Consensus 92 ~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 92 ESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp SSHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 4578899999999998764
No 85
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=21.59 E-value=58 Score=21.04 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031151 138 RTPEKVQKWRVALTQASNL 156 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~ 156 (165)
.+++..++|..||..++..
T Consensus 102 ~s~~e~~~Wi~al~~a~~~ 120 (128)
T 2dkp_A 102 DTGKEMELWMKAMLDAALV 120 (128)
T ss_dssp SSHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 4578899999999988764
No 86
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=21.39 E-value=61 Score=20.75 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHhhcccCc
Q 031151 138 RTPEKVQKWRVALTQASNLSGW 159 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~~G~ 159 (165)
.+++..++|..||..+..-.+-
T Consensus 92 ~s~~e~~~Wi~al~~a~~~~~~ 113 (123)
T 1upq_A 92 DTLEDLRGWLRALGRASRAEGD 113 (123)
T ss_dssp SSHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHHHhcccC
Confidence 4578899999999999876543
No 87
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=21.12 E-value=1.5e+02 Score=23.14 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCC----cEEEeeCCCCCCCCcchHHHHHHHhc---CCeEEEEEecCCcCc--hhHHHHHHHHH
Q 031151 31 NFTSHLYAALCRKK----IKTFIDDEELRRGDEISPALLNAIQG---SKISVVIFSQDYASS--KWCLNELVEIL 96 (165)
Q Consensus 31 ~fv~~L~~~L~~~g----i~v~~d~~~~~~G~~~~~~i~~~I~~---S~~~I~vlS~~~~~S--~wc~~El~~a~ 96 (165)
..+..|.+.|.++| +.|.+- +.-|.+...+..+.+.+ .+++++.+.|.|..+ .-..+++..++
T Consensus 62 ~q~~~L~~~L~~~~~~~~~~V~~a---mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l 133 (310)
T 2h1v_A 62 QQAHNLEQHLNEIQDEITFKAYIG---LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEA 133 (310)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEEE---ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCceEeeh---hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHH
Confidence 34667777776543 555554 45566665555555543 445677778877543 22344554444
No 88
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.07 E-value=57 Score=20.58 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 031151 138 RTPEKVQKWRVALTQASNL 156 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~~ 156 (165)
.+++..++|..||..+..-
T Consensus 95 ~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 95 SSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 4578899999999988753
No 89
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=20.89 E-value=2.1e+02 Score=19.57 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=20.5
Q ss_pred CCCc-chHHHHHHHhcCCeEEEEEecCCcC
Q 031151 56 RGDE-ISPALLNAIQGSKISVVIFSQDYAS 84 (165)
Q Consensus 56 ~G~~-~~~~i~~~I~~S~~~I~vlS~~~~~ 84 (165)
+|.. +.......++.++.+|+|++-.-..
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~~~ 112 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITKKE 112 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHH
Confidence 5644 4445567788999999999866443
No 90
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.88 E-value=57 Score=21.13 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHHhhc
Q 031151 138 RTPEKVQKWRVALTQASN 155 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~~ 155 (165)
.+++..++|..||..++.
T Consensus 100 ~s~~e~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 100 KDEAEMSSWLRVVNAAIA 117 (123)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 457889999999998765
No 91
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=20.75 E-value=42 Score=23.13 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhcCCcEEEee
Q 031151 30 DNFTSHLYAALCRKKIKTFID 50 (165)
Q Consensus 30 ~~fv~~L~~~L~~~gi~v~~d 50 (165)
..|+..|...|+++|++|=..
T Consensus 8 ~~fi~~Lk~~LK~rGvkV~~k 28 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKVKYA 28 (124)
T ss_dssp HHHHHHHHHHHHTTTCCCCHH
T ss_pred HHHHHHHHHHHHHCCeeecHH
Confidence 579999999999999987543
No 92
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=20.58 E-value=61 Score=26.89 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCCchhHHHHHHHHHhcCCcEEEeeCCCCC----CCCcchHHHHHHHhcCCeEE
Q 031151 26 EDTRDNFTSHLYAALCRKKIKTFIDDEELR----RGDEISPALLNAIQGSKISV 75 (165)
Q Consensus 26 ~D~~~~fv~~L~~~L~~~gi~v~~d~~~~~----~G~~~~~~i~~~I~~S~~~I 75 (165)
.|.|++=+-.|.+.|.++|..|.+.+-... .|..+.+.+.+++++++++|
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 456777788888999989988766432222 23333456778888888754
No 93
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=20.53 E-value=66 Score=20.27 Aligned_cols=17 Identities=12% Similarity=0.522 Sum_probs=14.1
Q ss_pred CChHHHHHHHHHHHHhh
Q 031151 138 RTPEKVQKWRVALTQAS 154 (165)
Q Consensus 138 ~~~~~~~~W~~al~~v~ 154 (165)
.+++..++|..||..+.
T Consensus 94 ~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 94 ESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 45788999999998874
No 94
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=20.24 E-value=71 Score=20.94 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=23.8
Q ss_pred EecccCCCchhHHHHHHHHHhcCCcEEEeeCCCC
Q 031151 21 LSFRGEDTRDNFTSHLYAALCRKKIKTFIDDEEL 54 (165)
Q Consensus 21 ISy~~~D~~~~fv~~L~~~L~~~gi~v~~d~~~~ 54 (165)
-=|+..| -..+..+...|+..||.+|+-+..+
T Consensus 25 eL~ra~d--~v~a~~~k~LLe~aGI~~fv~De~m 56 (97)
T 2hfv_A 25 ELLRTND--AVLLSAVGALLDGADIGHLVLDQNM 56 (97)
T ss_dssp EEEEECC--HHHHHHHHHHHHHTTCCEECCSCCC
T ss_pred eeeecCC--HHHHHHHHHHHHhCCCCEEEcCCcc
Confidence 3345666 4567888889999999999976544
Done!