BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031152
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 172 bits (436), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 81/133 (60%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
Query: 24 IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
GE G G SGKPLHFKG FHRI+ F+IQGGD RG+G G +SIYG FPDENFK KH
Sbjct: 40 CTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKH 99
Query: 84 SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
+ GV+SM N+GP++NGSQFF+ TVK WLDG+HVVFG+V++G+D V A+E G+ SGK
Sbjct: 100 TGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGK 158
Query: 144 PRKKVTIADSGEI 156
P K IAD G++
Sbjct: 159 PVKDCMIADCGQL 171
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 92/131 (70%), Gaps = 1/131 (0%)
Query: 24 IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
GEKG G SGKPL + G FHRI+ F+IQGGD RGDG G +SIYG F DENF H
Sbjct: 56 CTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTH 115
Query: 84 SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
++SM N+GP++NGSQFFITTV WLDG+HVVFGKV++GM+ V +IE G+ +GK
Sbjct: 116 DAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIE-KCGSQNGK 174
Query: 144 PRKKVTIADSG 154
P K V I SG
Sbjct: 175 PTKSVCITASG 185
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 153 bits (386), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 97/140 (69%), Gaps = 4/140 (2%)
Query: 24 IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK- 82
GEKG G SGKPLH+K FHR++ F+IQGGD RG+G G +SIYG TF DE+F K
Sbjct: 44 CTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKA 103
Query: 83 --HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTY 140
H+ G +SM N+GP++NGSQFFI T WLDG+HVVFG+VI G+D V +E G+
Sbjct: 104 GRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHVVFGRVIDGLDVVKKVE-RLGSS 162
Query: 141 SGKPRKKVTIADSGEIPKNK 160
SGK R ++ ++D GE+ +K
Sbjct: 163 SGKTRSRIVVSDCGEVAADK 182
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 91/135 (67%), Gaps = 7/135 (5%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +K FHR++ F+IQGGD RGDG G SIYG FPDENFK+KH
Sbjct: 51 GEKGFG-------YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 103
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G VSM N+G D+NGSQFFITTVK +WLDG+HVVFGKV++GM+ V +E KP
Sbjct: 104 PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPL 163
Query: 146 KKVTIADSGEIPKNK 160
K VTIAD G+I K
Sbjct: 164 KDVTIADCGKIEVEK 178
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 147 bits (370), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 91/135 (67%), Gaps = 7/135 (5%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +K FHR++ F+IQGGD RGDG G SIYG FPDENFK+KH
Sbjct: 51 GEKGFG-------YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 103
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G VSM N+G D+NGSQFFITTVK +WLDG+HVVFGKV++GM+ V +E KP
Sbjct: 104 PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPL 163
Query: 146 KKVTIADSGEIPKNK 160
K VTIAD G+I K
Sbjct: 164 KDVTIADCGKIEVEK 178
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 146 bits (368), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 90/135 (66%), Gaps = 7/135 (5%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +K FHR++ F+IQGGD RGDG G SIYG FPDENFK+KH
Sbjct: 44 GEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 96
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G VSM N+G D+NGSQFFITTVK +WLDG+HVVFGKV++GM+ V +E KP
Sbjct: 97 PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPL 156
Query: 146 KKVTIADSGEIPKNK 160
K V IAD G+I K
Sbjct: 157 KDVIIADCGKIEVEK 171
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 146 bits (368), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 90/135 (66%), Gaps = 7/135 (5%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +K FHR++ F+IQGGD RGDG G SIYG FPDENFK+KH
Sbjct: 54 GEKGFG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYG 106
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G VSM N+G D+NGSQFFITTVK +WLDG+HVVFGKV++GM+ V +E KP
Sbjct: 107 PGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPL 166
Query: 146 KKVTIADSGEIPKNK 160
K V IAD G+I K
Sbjct: 167 KDVIIADCGKIEVEK 181
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 2/131 (1%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEK G+ GK LH+K FHRI+ F+ QGGDI G+G G +SIYG +F DENF +KH
Sbjct: 42 GEK-IGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQ 100
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++N SQFFIT V WLDG+HVVFGKVI+GM+ V +E G SG +
Sbjct: 101 PGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVK 159
Query: 146 KKVTIADSGEI 156
+ V I D GE+
Sbjct: 160 RSVVITDCGEL 170
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 90/131 (68%), Gaps = 7/131 (5%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHR++ F+IQGGDI GDG G SIYG TFPDENFK+KH
Sbjct: 54 GEKGYG-------YKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYG 106
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G VSM N+GPD+NGSQFFIT K +WLDG+HVVFGKVI GM V++IE A +P
Sbjct: 107 IGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPL 166
Query: 146 KKVTIADSGEI 156
+I +SG+I
Sbjct: 167 TNCSIINSGKI 177
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 61 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 113
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 114 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 172
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 173 KKITIADCGQL 183
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 89/130 (68%), Gaps = 2/130 (1%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEK G+ GK LH+K FHRI+ F+ QGGDI G+G G +SIYG +F DENF +KH
Sbjct: 42 GEK-IGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQ 100
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++N SQF IT V WLDG+HVVFGKVI+GM+ V +E G SG +
Sbjct: 101 PGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVK 159
Query: 146 KKVTIADSGE 155
+ V I D GE
Sbjct: 160 RSVVITDCGE 169
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 42 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 95 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 41 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 93
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 94 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 152
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 153 KKITIADCGQL 163
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 24 IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
GEKG G + G FHR++ F++QGGD G+G G SIYG F DENF++KH
Sbjct: 38 CTGEKGFG-------YAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKH 90
Query: 84 SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
+ G++SM N+GP++NGSQFFITTV SWLDG+HVVFG+VI GM+ V AIE G+ SGK
Sbjct: 91 NKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIE-AEGSGSGK 149
Query: 144 PRKKVTIADSG 154
PR ++ IA G
Sbjct: 150 PRSRIEIAKCG 160
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 42 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 95 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 42 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 95 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 50 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 102
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 103 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 161
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 162 KKITIADCGQL 172
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 42 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 95 PGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 42 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G+++M N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 95 PGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 42 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 95 PGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 46 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 98
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 99 PGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTS 157
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 158 KKITIADCGQL 168
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 139 bits (351), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 92/131 (70%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FH+I+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 42 GEKGFG-------YKGSCFHKIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 95 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 139 bits (351), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 83/118 (70%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
+ G FHR+++ F+IQGGD RGDG G SIYG F DENFK+KH AG +SM N+G D+
Sbjct: 51 YPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADT 110
Query: 99 NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156
NGSQFFITTVK WLDG HVVFGK+++GMD V IE +P++ V IA SG I
Sbjct: 111 NGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 139 bits (350), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 24 IIGEKGTG-ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82
GEKG G +GKPLHFKG PFHRI+ F+IQGGD +G G +SIYG F DENF K
Sbjct: 52 CTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK 111
Query: 83 HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSG 142
H G++SM N+G ++NGSQFFITTV LDG+HVVFG+VI+GM +E
Sbjct: 112 HDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILE-NVEVKGE 170
Query: 143 KPRKKVTIADSGEI 156
KP K IA+ GE+
Sbjct: 171 KPAKLCVIAECGEL 184
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 139 bits (350), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+
Sbjct: 41 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 93
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFG V +GM+ V A+E G+ +GK
Sbjct: 94 PGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAME-RFGSRNGKTS 152
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 153 KKITIADCGQL 163
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 24 IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
GEKG G +KG FHR++ F+ Q GD +G G SIYG FPDENF +KH
Sbjct: 40 CTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKH 92
Query: 84 SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
GV+SM N+GP++NGSQFFI T+K WLDG+HVVFG VI+GMD V IE G+ SG+
Sbjct: 93 VGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGR 151
Query: 144 PRKKVTIADSGEI 156
KK+ I D G++
Sbjct: 152 TSKKIVITDCGQL 164
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 24 IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
GEKG G +KG FHR++ F+ Q GD +G G SIYG FPDENF +KH
Sbjct: 41 CTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKH 93
Query: 84 SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
GV+SM N+GP++NGSQFFI T+K WLDG+HVVFG VI+GMD V IE G+ SG+
Sbjct: 94 VGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGR 152
Query: 144 PRKKVTIADSGEI 156
KK+ I D G++
Sbjct: 153 TSKKIVITDCGQL 165
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 20 WYFPIIGEKGTGA-SGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDEN 78
+ G GTG SGKPLH+KG FHR++ F+IQGGD +GDG G +SIYGG F DE
Sbjct: 39 FLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEE 98
Query: 79 FKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAG 138
F +KH VVSM N GP++NGSQFFITT A L+ HVVFGKV+ G + V IE
Sbjct: 99 FVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKT 158
Query: 139 TYSGKPRKKVTIADSGEI 156
+P V I + GE+
Sbjct: 159 NSKNRPLADVVILNCGEL 176
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 24 IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
GEKG G +KG FHR++ F+ Q GD +G G SIYG FPDENF +KH
Sbjct: 40 CTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKH 92
Query: 84 SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
GV+SM N+GP++NGSQFFI T+K WLDG+HVVFG VI+GMD V IE G+ SG+
Sbjct: 93 VGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGR 151
Query: 144 PRKKVTIADSGEI 156
KK+ I D G++
Sbjct: 152 TSKKIVITDCGQL 164
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 89/133 (66%), Gaps = 8/133 (6%)
Query: 24 IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
GEKG G + G PFHR++ F++QGGD G+G G SIYGG FPDENFK H
Sbjct: 38 CTGEKGFG-------YAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHH 90
Query: 84 SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
G++SM N+GP++NGSQFFITTV WLDG+HVVFG+V+ G D V +E G+ SG
Sbjct: 91 DRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVE-SLGSPSGA 149
Query: 144 PRKKVTIADSGEI 156
+ ++ +A SGE+
Sbjct: 150 TKARIVVAKSGEL 162
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 138 bits (348), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 24 IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
GEKG G +KG FHR++ F+ Q GD +G G SIYG FPDENF +KH
Sbjct: 39 CTGEKGFG-------YKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKH 91
Query: 84 SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
GV+SM N+GP++NGSQFFI T+K WLDG+HVVFG VI+GMD V IE G+ SG+
Sbjct: 92 VGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGR 150
Query: 144 PRKKVTIADSGEI 156
KK+ I D G++
Sbjct: 151 TSKKIVITDCGQL 163
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGG+ +G G SIYG F DENF +KH+
Sbjct: 42 GEKGFG-------YKGSCFHRIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 95 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 88/131 (67%), Gaps = 7/131 (5%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHR++ F+IQGGD DG G SIYG TFPDENFK+KH
Sbjct: 46 GEKGYG-------YKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYG 98
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G VSM N+GPD+NGSQFFIT K +WLDG+HVVFGKV+ GM V++IE A +P
Sbjct: 99 IGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPL 158
Query: 146 KKVTIADSGEI 156
TI +SG+I
Sbjct: 159 TDCTIVNSGKI 169
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 83/123 (67%)
Query: 34 GKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVN 93
G P+ +KG FHR++ F+IQGGD V GDG G SIY G F DENFK++HS G++SM N
Sbjct: 55 GVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMAN 114
Query: 94 SGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADS 153
SGP +NG QFFIT K WLDG+HVVFGK+I G+ + IE + KP+ V I+
Sbjct: 115 SGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQC 174
Query: 154 GEI 156
GE+
Sbjct: 175 GEM 177
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 24 IIGEKGTGASG-KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82
GEKGTG S KPLH+K FHR+V F++QGGD G+G+G +SIYGG F DE+F +K
Sbjct: 63 CTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 122
Query: 83 HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSG 142
H+ A ++SM N G D+NGSQFFITT LDG HVVFG+VI G + V IE +
Sbjct: 123 HNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAAS 182
Query: 143 KPRKKVTIADSGEI 156
KP +V I GE+
Sbjct: 183 KPFAEVRILSCGEL 196
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGG+ +G G SIYG F DENF +KH+
Sbjct: 42 GEKGFG-------YKGSCFHRIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTG 94
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK
Sbjct: 95 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTS 153
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 154 KKITIADCGQL 164
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF+ QGGD +G G SIYG F DENF +KH+
Sbjct: 41 GEKGFG-------YKGSCFHRIIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTG 93
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N+GP++NGSQFFI T K WLDG+HVVFGKV +GM+ V A++ G+ +GK
Sbjct: 94 PGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMK-RFGSRNGKTS 152
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 153 KKITIADCGQL 163
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
FKG FHRI+ F+ QGGD +G G SIYG F DENF +KH+ G++SM NSGP++
Sbjct: 48 FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNT 107
Query: 99 NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 155
NGSQFF+T K WLDG+HVVFG+V +G+D + IE G+ GKP++KV IAD GE
Sbjct: 108 NGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 163
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
FKG FHRI+ F+ QGGD +G G SIYG F DENF +KH+ G++SM NSGP++
Sbjct: 56 FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNT 115
Query: 99 NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 155
NGSQFF+T K WLDG+HVVFG+V +G+D + IE G+ GKP++KV IAD GE
Sbjct: 116 NGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 171
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 24 IIGEKGTGASG-KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82
GEKGTG S KPLH+K FHR+V F++QGGD G+G+G +SIYGG F DE+F +K
Sbjct: 46 CTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 105
Query: 83 HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSG 142
H+ ++SM N G D+NGSQFFITT LDG HVVFG+VI G + V IE +
Sbjct: 106 HNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAAS 165
Query: 143 KPRKKVTIADSGEI 156
KP +V I GE+
Sbjct: 166 KPFAEVRILSCGEL 179
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
Query: 24 IIGEKGTGASG-KPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82
GEKGTG S KPLH+K FHR+V F++QGGD G+G+G +SIYGG F DE+F +K
Sbjct: 46 CTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVK 105
Query: 83 HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSG 142
H+ ++SM N G D+NGSQFFITT LDG HVVFG+VI G + V IE +
Sbjct: 106 HNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAAS 165
Query: 143 KPRKKVTIADSGEI 156
KP +V I GE+
Sbjct: 166 KPFAEVRILSCGEL 179
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 88/131 (67%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G +KG FHRI+ GF QGGD R +G G SIYG F DENF +KH+
Sbjct: 41 GEKGFG-------YKGSCFHRIIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTG 93
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++S N+GP++NGSQFFI T K WLDG+HVVFGKV +G + V A E G+ +GK
Sbjct: 94 PGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVEAXE-RFGSRNGKTS 152
Query: 146 KKVTIADSGEI 156
KK+TIAD G++
Sbjct: 153 KKITIADCGQL 163
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 132 bits (333), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 81/117 (69%), Gaps = 1/117 (0%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
FKG FHRI+ F QGGD +G G SIYG F DENF +KH+ G++S NSGP++
Sbjct: 57 FKGSSFHRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNT 116
Query: 99 NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 155
NGSQFF+T K WLDG+HVVFG+V +G+D + IE G+ GKP++KV IAD GE
Sbjct: 117 NGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 172
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 132 bits (333), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 88/130 (67%), Gaps = 3/130 (2%)
Query: 27 EKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHA 86
E TG G +K FHR++ F++QGGD R +G G SIYG F DENF++KH+
Sbjct: 37 ELATGQHG--FGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKP 94
Query: 87 GVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK 146
G++SM N+G ++NGSQFFITTV SWLDG+HVVFG+VI+G+D V +E G G+ SGK
Sbjct: 95 GLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE-GKGSASGKTNA 153
Query: 147 KVTIADSGEI 156
+ I D G +
Sbjct: 154 TIKITDCGTV 163
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 132 bits (332), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 88/130 (67%), Gaps = 3/130 (2%)
Query: 27 EKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHA 86
E TG G +K FHR++ F++QGGD R +G G SIYG F DENF++KH+
Sbjct: 38 ELATGQHG--FGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKP 95
Query: 87 GVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK 146
G++SM N+G ++NGSQFFITTV SWLDG+HVVFG+VI+G+D V +E G G+ SGK
Sbjct: 96 GLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE-GKGSASGKTNA 154
Query: 147 KVTIADSGEI 156
+ I D G +
Sbjct: 155 TIKITDCGTV 164
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/118 (55%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
+KG FHR++ F+IQGGD DG G SIYG F DEN KIKH G VSM N+GP+S
Sbjct: 50 YKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH-FVGAVSMANAGPNS 108
Query: 99 NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156
NGSQFF+TT WLDG HVVFGKV++GMD V +E + KP+K V I D G +
Sbjct: 109 NGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 87/133 (65%), Gaps = 8/133 (6%)
Query: 24 IIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKH 83
GE+G G + FHR++ F+ QGGD V+GDG G SIYG F DENF+++H
Sbjct: 47 CTGERGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRH 99
Query: 84 SHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 143
GV+SM NSGP++NGSQFFI T K WLDG+HVVFG+V+ G + V +E G+ SGK
Sbjct: 100 EGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKME-SVGSKSGK 158
Query: 144 PRKKVTIADSGEI 156
++ V I+ GE+
Sbjct: 159 VKEPVIISRCGEL 171
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 129 bits (324), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 26 GEKGTG-ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHS 84
GEKG G +GK L +KG FHR+V F+IQGGD G+GKG +SIYGG F DENF +KH
Sbjct: 58 GEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHD 117
Query: 85 HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 144
A ++SM N G +NGSQFFITT A LDG HVVFG VI G + + IE + +P
Sbjct: 118 RAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRP 177
Query: 145 RKKVTIADSG 154
V + D G
Sbjct: 178 YADVRVIDCG 187
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 126 bits (316), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 84/123 (68%), Gaps = 3/123 (2%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
+KG FHRI+ GF++QGGD +G G SIYG FPDENF++KH+ G++SM N G +
Sbjct: 72 YKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHT 131
Query: 99 NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK--KVTIADSGEI 156
NGSQFFIT K WLD +HVVFG+V++GMD V+ I G+ SG+ +K ++ I D G +
Sbjct: 132 NGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI-AKYGSESGQVKKGYRIEIRDCGVL 190
Query: 157 PKN 159
N
Sbjct: 191 GSN 193
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
+K FHR++ F+IQGGD DG G SIYG F DEN +KH G +SM N+GP++
Sbjct: 56 YKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNT 114
Query: 99 NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156
NGSQFFITT WLDG HVVFGKV+ GMD V IE +P K V I SGE+
Sbjct: 115 NGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
+K FHR++ F+IQGGD DG G SIYG F DEN +KH G +SM N+GP++
Sbjct: 56 YKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNT 114
Query: 99 NGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156
NGSQFFITT WLDG HVVFGKV+ GMD V IE +P K V I SGE+
Sbjct: 115 NGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 83/128 (64%), Gaps = 3/128 (2%)
Query: 32 ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSM 91
+ P+ +K FHR++ F+IQGGD + +G GS SIYG F DENF IKH G++SM
Sbjct: 102 VNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSM 161
Query: 92 VNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQG--MDTVYAIEGGAGT-YSGKPRKKV 148
NSGP++NG QFFITT K WLDG++VVFG++I + + IE + T Y KP+ +
Sbjct: 162 ANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPI 221
Query: 149 TIADSGEI 156
+ + GE+
Sbjct: 222 NVVECGEL 229
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 81/131 (61%), Gaps = 8/131 (6%)
Query: 26 GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85
GEKG G FK FHR++ FV QGGDI + DG G SIYG F DENF +KH+
Sbjct: 45 GEKGFG-------FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTG 97
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 145
G++SM N G ++N SQF IT KA LD +HVVFG V GMDTV IE G+ G
Sbjct: 98 PGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIE-SFGSPKGSVC 156
Query: 146 KKVTIADSGEI 156
+++TI + G+I
Sbjct: 157 RRITITECGQI 167
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 78/121 (64%), Gaps = 3/121 (2%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDS 98
++ FHRI+ F+IQGGD RG+G G SIYG F DENF KH G++SM N+GP++
Sbjct: 52 YRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNT 111
Query: 99 NGSQFFITTVKASWLDGEHVVFGKVI--QGMDTVYAIEG-GAGTYSGKPRKKVTIADSGE 155
NGSQFFITT SWLDG+HVVFG+V + V IE G+ + S + + I + GE
Sbjct: 112 NGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGE 171
Query: 156 I 156
+
Sbjct: 172 L 172
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 44 FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK-IKHSHAGVVSMVNSGPDSNGSQ 102
FHR++ F++Q GD GDG G +SI+G F DE F + HS +VSM N GP++NGSQ
Sbjct: 47 FHRVIKHFMVQTGD-PSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQ 105
Query: 103 FFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
FFITTV WLD +H VFGKV QG V IE KP + + I +
Sbjct: 106 FFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 2/94 (2%)
Query: 38 HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
++ G FHRI+ F+IQGGD G G+G SIYG F DE + +K + AG+++M N+GP
Sbjct: 47 YYNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGP 105
Query: 97 DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTV 130
D+NGSQFF+T WLDG+H +FG+V QG+ V
Sbjct: 106 DTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMV 139
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 2/94 (2%)
Query: 38 HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
++ G FHRI+ F+IQGGD G G+G SIYG F DE + +K + AG+++M N+GP
Sbjct: 47 YYNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGP 105
Query: 97 DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTV 130
D+NGSQFF+T WLDG+H +FG+V QG+ V
Sbjct: 106 DTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMV 139
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 2/94 (2%)
Query: 38 HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
++ G FHRI+ F+IQGGD G G+G SIYG F DE + +K + AG+++M N+GP
Sbjct: 47 YYNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGP 105
Query: 97 DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTV 130
D+NGSQFF+T WLDG+H +FG+V QG+ V
Sbjct: 106 DTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMV 139
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 38 HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGP 96
++ G FHRI+ GF+IQ GD G G G +SI+GG F DE + ++H +SM N+G
Sbjct: 57 YYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGS 115
Query: 97 DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEG-GAGTYSGKPRKKVTIAD 152
++NGSQFFIT V WLD +H VFG+V +GM+ V I + KP + V+I +
Sbjct: 116 NTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 44 FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQ 102
FHR++ FVIQGGD G GKG SIYG F DE N ++KH+ AG++SM N+GP++N SQ
Sbjct: 80 FHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQ 138
Query: 103 FFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 144
FFIT LDG+H +F +V + M + I T + KP
Sbjct: 139 FFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP 180
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 6/120 (5%)
Query: 38 HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KIKHSHAGVVSMVNSG- 95
++K FH+ + GF+IQGGD G GKG +SIYG F DE + ++K+ G++SM + G
Sbjct: 52 YYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGA 110
Query: 96 ---PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152
P++NGSQFFIT L+GE+V+FGK+I G +T+ +E S KP ++ I D
Sbjct: 111 SKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 7/119 (5%)
Query: 38 HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK-IKHSHAGVVSMVNSGP 96
++ G FHR + GF++Q GD G G+G +SI+G F DE + +KH+ GVVSM N+GP
Sbjct: 36 YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGP 94
Query: 97 DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEG---GAGTYSGKPRKKVTIAD 152
++NGSQFFIT K LD ++ VFGKVI G++T+ +E TY +P V I D
Sbjct: 95 NTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTY--RPLNDVHIKD 151
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 7/119 (5%)
Query: 38 HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK-IKHSHAGVVSMVNSGP 96
++ G FHR + GF++Q GD G G+G +SI+G F DE + +KH+ GVVSM N+GP
Sbjct: 42 YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGP 100
Query: 97 DSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEG---GAGTYSGKPRKKVTIAD 152
++NGSQFFIT K LD ++ VFGKVI G++T+ +E TY +P V I D
Sbjct: 101 NTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTY--RPLNDVHIKD 157
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 44 FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQ 102
FHR+V GF++QGGD G G G +SIYG F DE + +++ + G+V+M N+G NGSQ
Sbjct: 66 FHRVVPGFIVQGGDPT-GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQ 124
Query: 103 FFITTVKASWLDGEHVVFGKVIQGMDTVYAI 133
FF T +A L+ +H +FGKV DTVY +
Sbjct: 125 FFFTLGRADELNNKHTIFGKVTG--DTVYNM 153
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 38 HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAG--VVSMVNSG 95
++ G FHR + FVIQGGD G G +S +G F DE F+ SH G ++SM NSG
Sbjct: 55 YYDGTIFHRSIRNFVIQGGDPTGT-GTGGESYWGKPFKDE-FRPNLSHTGRGILSMANSG 112
Query: 96 PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEG-GAGTYSGKPRKKVTI 150
P+SN SQFFIT ++LD +H +FG+V+ G D + A+E + + +P++++ I
Sbjct: 113 PNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 32 ASGKPL--HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTF-PDENFKIKHSHAGV 88
ASG P + G FHR++ GF+IQGGD G + F P+ F + +
Sbjct: 66 ASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGPGYKFADEFHPELQFDKPY----L 121
Query: 89 VSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI--QGMDTVYAIEGGAGTYSGKPRK 146
++M N+GP +NGSQFFIT K L+ H +FG+VI + V AI A + +P
Sbjct: 122 LAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTD 181
Query: 147 KVTI 150
V I
Sbjct: 182 PVVI 185
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 12/105 (11%)
Query: 38 HFKGKPFHRIVSGFVIQGGDI-VRGDGKGSD------SIYG----GTFPDE-NFKIKHSH 85
+F FHR + F+IQGG +R K + SI G F DE + ++ H
Sbjct: 42 YFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQG 101
Query: 86 AGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTV 130
GV+SM N G SN S+FFIT L+ +H +FG+V+ G+D +
Sbjct: 102 IGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVL 146
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 18/97 (18%)
Query: 44 FHRIVSGFVIQGGDIVRGDGKG-SDSIYGGTFPD--ENFKIKHSHAGVVSMVNSGPDS-- 98
FHR+V F++QGGD G G+G +D+ + G D + ++K + G+V + N G S
Sbjct: 63 FHRVVKDFIVQGGDPT-GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKD 121
Query: 99 ------------NGSQFFITTVKASWLDGEHVVFGKV 123
NG+QFFIT +A L+ + +FGKV
Sbjct: 122 AENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKV 158
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSG-PD 97
+ FHR++ GF+IQGG + + D + + G ++M + D
Sbjct: 41 YNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLR---NTRGTIAMARTADKD 97
Query: 98 SNGSQFFITTVKASWLD-GE----HVVFGKVIQGMDTVYAIEG----GAGTYSGKPRKKV 148
S SQFFI ++LD G+ + VFGKV++GMD I G Y P K V
Sbjct: 98 SATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV 157
Query: 149 TIADSGEIP 157
I + +P
Sbjct: 158 VILSAKVLP 166
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 39 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSG-PD 97
+ FHR++ GF+IQGG + + D + + G ++M + D
Sbjct: 41 YNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLR---NTRGTIAMARTADKD 97
Query: 98 SNGSQFFITTVKASWLD-GE----HVVFGKVIQGMDTVYAIEG----GAGTYSGKPRKKV 148
S SQFFI ++LD G+ + VFGKV++GMD I G Y P K V
Sbjct: 98 SATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV 157
Query: 149 TIADSGEIP 157
I + +P
Sbjct: 158 VILSATVLP 166
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 38 HFKGKPFHRIVSGFVIQGGDIVRG-DGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGP 96
H+ G FHR+++GF+IQGG G K +D+ + N +K+ + + P
Sbjct: 39 HYDGTIFHRVINGFMIQGGGFEPGLKQKPTDAPIAN---EANNGLKNDTYTIAMARTNDP 95
Query: 97 DSNGSQFFITTVKASWLDGE--------HVVFGKVIQGMDTVYAIE----GGAGTYSGKP 144
S +QFFI +L+ + VFGKV++G D V I+ G G + P
Sbjct: 96 HSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVP 155
Query: 145 RKKVTI 150
V I
Sbjct: 156 NDDVVI 161
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 44 FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQF 103
FHR+++GF+IQGG G + + N +K++ + P S +QF
Sbjct: 41 FHRVINGFMIQGGGF--EPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQF 98
Query: 104 FITTVKASWLD--GE------HVVFGKVIQGMDTVYAIEGGA----GTYSGKPRKKVTI 150
FI V +L+ GE + VF +V+ GMD V I+G A G + P++ V I
Sbjct: 99 FINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 44 FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQF 103
FHR+++GF+IQGG G + + N +K++ + P S +QF
Sbjct: 41 FHRVINGFMIQGGGF--EPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQF 98
Query: 104 FITTVKASWLD--GE------HVVFGKVIQGMDTVYAIEGGA----GTYSGKPRKKVTI 150
FI V +L+ GE + VF +V+ GMD V I+G A G + P++ V I
Sbjct: 99 FINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 38 HFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPD 97
H+ G FHR++ GF+IQGG G S + N + + + P
Sbjct: 35 HYDGTIFHRVIDGFMIQGGGF--EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPH 92
Query: 98 SNGSQFFITTVKASWLDGE--------HVVFGKVIQGMDTVYAIEGGA 137
S +QFFI ++LD + VFG+V++G D V I+ A
Sbjct: 93 SASAQFFINVKDNAFLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVA 140
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 25 IGEKGTGASGKPLH----FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE--- 77
+ GTG H ++G FH ++ I GDI +G + ++Y DE
Sbjct: 58 VNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYC----DEPIP 113
Query: 78 ----NFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASW-----------LDGEHVVFGK 122
++ H G++S+V D +G++++ +T + LD + VV G+
Sbjct: 114 PVFGDYFYPHESKGLLSLV-PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQ 172
Query: 123 VIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 154
V G+D + I Y+G+ +I G
Sbjct: 173 VYGGLDVLDKINSMIKPYAGRKYPTFSIGKCG 204
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 74 FPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGE 116
PD+N + + GV+S+V +G D + V+A+ L GE
Sbjct: 157 LPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADLQGE 199
>pdb|1H14|A Chain A, Structure Of A Cold-Adapted Family 8 Xylanase
Length = 405
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 79 FKIKHSHAGVVSMVNSGPDSNGSQFF---ITTVKASWLD-GEHVVFGKVIQGMDTV 130
+K+K + G V V+ GP NG ++F + A W + GE + I ++T+
Sbjct: 124 WKLKLNQNGFVYKVDEGPAPNGEEYFAFALLNASARWGNSGEFNYYNDAITMLNTI 179
>pdb|2PRX|A Chain A, Crystal Structure Of Thioesterase Superfamily Protein
(Zp_00837258.1) From Shewanella Loihica Pv-4 At 1.65 A
Resolution
pdb|2PRX|B Chain B, Crystal Structure Of Thioesterase Superfamily Protein
(Zp_00837258.1) From Shewanella Loihica Pv-4 At 1.65 A
Resolution
Length = 160
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 38 HFKGKPFHRIVSGFVIQG--GDIVRGDGKGSDS 68
HF KPFH + GFV G ++ G GS S
Sbjct: 43 HFXPKPFHTAIPGFVYGGLIASLIDCHGTGSAS 75
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 18 YIWYFPIIGEKGTGASGKPLHFKGK---PFHRIVSGFVIQGGDIVRGDGK 64
Y++ + IIG+ G G S L F K P H + G V G +V DGK
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-VEFGARMVNIDGK 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,216,550
Number of Sequences: 62578
Number of extensions: 305015
Number of successful extensions: 773
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 88
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)