Query 031152
Match_columns 165
No_of_seqs 130 out of 1171
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 1.3E-53 2.8E-58 345.3 11.9 152 8-159 23-181 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 2.7E-50 5.8E-55 302.3 12.5 148 7-161 53-207 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 6.4E-46 1.4E-50 264.0 9.0 148 7-156 24-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 2.4E-43 5.2E-48 278.2 17.0 152 8-163 67-226 (249)
5 PTZ00060 cyclophilin; Provisio 100.0 3.3E-43 7.1E-48 268.0 16.0 148 8-157 30-183 (183)
6 cd01926 cyclophilin_ABH_like c 100.0 3.9E-43 8.4E-48 263.5 15.7 144 8-154 15-164 (164)
7 cd01923 cyclophilin_RING cyclo 100.0 7.2E-43 1.6E-47 260.8 16.6 143 9-162 10-159 (159)
8 PLN03149 peptidyl-prolyl isome 100.0 3.7E-43 8E-48 268.2 15.1 147 8-156 33-186 (186)
9 cd01921 cyclophilin_RRM cyclop 100.0 1.2E-42 2.6E-47 261.3 16.5 144 9-163 8-166 (166)
10 KOG0111 Cyclophilin-type pepti 100.0 7.2E-44 1.6E-48 272.1 9.7 143 7-157 150-298 (298)
11 cd01927 cyclophilin_WD40 cyclo 100.0 1.2E-41 2.5E-46 251.5 15.2 133 9-152 8-147 (148)
12 KOG0881 Cyclophilin type pepti 100.0 2.4E-43 5.3E-48 248.2 5.2 143 9-156 20-163 (164)
13 COG0652 PpiB Peptidyl-prolyl c 100.0 1.1E-41 2.3E-46 252.2 13.9 135 9-156 10-157 (158)
14 cd01928 Cyclophilin_PPIL3_like 100.0 1.8E-41 4E-46 251.8 15.0 135 9-154 11-152 (153)
15 cd01922 cyclophilin_SpCYP2_lik 100.0 8E-41 1.7E-45 246.6 14.6 132 9-152 8-146 (146)
16 KOG0883 Cyclophilin type, U bo 100.0 2.2E-41 4.8E-46 275.5 7.7 141 10-161 289-436 (518)
17 cd01925 cyclophilin_CeCYP16-li 100.0 1.4E-39 3E-44 245.7 15.3 144 8-162 15-166 (171)
18 KOG0882 Cyclophilin-related pe 100.0 2.8E-39 6.1E-44 267.4 10.7 139 9-155 415-557 (558)
19 PRK10903 peptidyl-prolyl cis-t 100.0 3.9E-38 8.4E-43 241.2 15.2 136 9-157 39-190 (190)
20 PRK10791 peptidyl-prolyl cis-t 100.0 1.7E-37 3.6E-42 232.8 15.1 135 9-156 10-163 (164)
21 cd01920 cyclophilin_EcCYP_like 100.0 5.9E-37 1.3E-41 228.1 14.5 133 8-153 7-155 (155)
22 cd00317 cyclophilin cyclophili 100.0 1.2E-35 2.6E-40 218.4 14.7 133 8-152 7-146 (146)
23 KOG0884 Similar to cyclophilin 100.0 1.4E-36 2.9E-41 212.9 9.0 140 9-159 11-158 (161)
24 KOG0865 Cyclophilin type pepti 100.0 8E-36 1.7E-40 222.5 7.5 141 8-156 18-167 (167)
25 PF00160 Pro_isomerase: Cyclop 100.0 9.9E-35 2.1E-39 215.4 12.1 136 7-155 9-155 (155)
26 KOG0415 Predicted peptidyl pro 100.0 1.1E-34 2.4E-39 234.2 10.6 144 9-163 11-169 (479)
27 cd01924 cyclophilin_TLP40_like 100.0 9.4E-34 2E-38 214.7 12.8 119 7-135 6-164 (176)
28 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.1E-33 4.6E-38 227.8 8.7 143 9-162 23-173 (439)
29 KOG0882 Cyclophilin-related pe 97.7 0.00011 2.4E-09 62.5 6.4 143 9-156 113-262 (558)
30 TIGR03268 methan_mark_3 putati 93.0 1 2.2E-05 39.3 9.5 116 6-135 373-495 (503)
31 TIGR03268 methan_mark_3 putati 90.2 0.52 1.1E-05 41.1 4.7 57 73-134 246-302 (503)
32 PRK00969 hypothetical protein; 89.9 3.3 7.1E-05 36.3 9.3 115 6-135 376-497 (508)
33 PRK00969 hypothetical protein; 89.7 0.54 1.2E-05 41.1 4.4 59 71-134 247-305 (508)
34 PF12903 DUF3830: Protein of u 89.7 0.46 1E-05 35.0 3.5 101 6-134 6-129 (147)
35 COG4070 Predicted peptidyl-pro 88.9 1.3 2.7E-05 37.8 5.9 19 117-135 480-498 (512)
36 COG4070 Predicted peptidyl-pro 81.9 1 2.2E-05 38.3 2.2 59 71-134 246-304 (512)
37 PF04126 Cyclophil_like: Cyclo 62.6 10 0.00022 26.8 3.1 46 84-134 60-112 (120)
38 PF12396 DUF3659: Protein of u 47.7 60 0.0013 20.4 4.5 43 113-157 16-60 (64)
39 PF05913 DUF871: Bacterial pro 33.5 29 0.00062 29.3 1.9 49 85-134 299-348 (357)
40 PF08415 NRPS: Nonribosomal pe 23.4 80 0.0017 18.9 2.1 27 124-152 4-30 (58)
41 cd01271 Fe65_C Fe65 C-terminal 20.6 79 0.0017 22.6 1.9 31 126-156 19-52 (124)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-53 Score=345.33 Aligned_cols=152 Identities=47% Similarity=0.787 Sum_probs=147.2
Q ss_pred EEEEEEEcCCccc------cceeeeccCC-CCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152 8 LLKISGLYAQYIW------YFPIIGEKGT-GASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK 80 (165)
Q Consensus 8 ~rivieL~~d~aP------~~l~~g~~g~-~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~ 80 (165)
=|||||||.|.|| ++||+|++|. ...++.++|+|+.|||||++|||||||++.++|+||.||||..|+||++.
T Consensus 23 GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~FdDEnF~ 102 (372)
T KOG0546|consen 23 GRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEKFDDENFE 102 (372)
T ss_pred ceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccccccccccce
Confidence 3999999999999 8999999995 35789999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCC
Q 031152 81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKN 159 (165)
Q Consensus 81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~ 159 (165)
++|+++++|||||.|||+||||||||+.++|||||+|+|||+||+|++|++.|+.+.++..++|..+|+|.+||+|...
T Consensus 103 lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 103 LKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKK 181 (372)
T ss_pred eccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEeccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999866
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-50 Score=302.27 Aligned_cols=148 Identities=52% Similarity=0.904 Sum_probs=141.7
Q ss_pred eEEEEEEEcCCccc------cceee-eccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc
Q 031152 7 KLLKISGLYAQYIW------YFPII-GEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF 79 (165)
Q Consensus 7 ~~rivieL~~d~aP------~~l~~-g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~ 79 (165)
.-||||+||++.+| ..||+ +++|++ |.+++||||+|||+|||||.+.+++.++.|+||..|+||++
T Consensus 53 ~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DENf 125 (217)
T KOG0880|consen 53 VGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDENF 125 (217)
T ss_pred ccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCccc
Confidence 35999999999999 77898 888876 99999999999999999999999999999999999999999
Q ss_pred cccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCC
Q 031152 80 KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKN 159 (165)
Q Consensus 80 ~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~ 159 (165)
.++|+++|.||||+.||++||||||||+...+|||++|+|||+|++||++|.+|+.+.++..++|.++++|.+||.|+.+
T Consensus 126 ~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~~ 205 (217)
T KOG0880|consen 126 KLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELPVE 205 (217)
T ss_pred eeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CC
Q 031152 160 KW 161 (165)
Q Consensus 160 ~~ 161 (165)
..
T Consensus 206 ~~ 207 (217)
T KOG0880|consen 206 YL 207 (217)
T ss_pred ch
Confidence 43
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-46 Score=264.02 Aligned_cols=148 Identities=45% Similarity=0.753 Sum_probs=140.6
Q ss_pred eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152 7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK 80 (165)
Q Consensus 7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~ 80 (165)
.-||.||||.|.+| +.+|+|+.- ..+++.-|+++.|||+|++|+|||||..+++|+|..|+|+..++||++.
T Consensus 24 ~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~DENFt 101 (177)
T KOG0879|consen 24 IGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPDENFT 101 (177)
T ss_pred cceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCCCccee
Confidence 34999999999999 789999864 3456677999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152 81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156 (165)
Q Consensus 81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l 156 (165)
++|+.+|+||||++++++||+|||||..++.+||++|+|||||++|+.++++|+.+++-.+++|+-+|+|+.||++
T Consensus 102 lkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGem 177 (177)
T KOG0879|consen 102 LKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGEM 177 (177)
T ss_pred eecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999974
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.4e-43 Score=278.17 Aligned_cols=152 Identities=25% Similarity=0.345 Sum_probs=137.1
Q ss_pred EEEEEEEcCCccc------cceeeeccCCC-CCCCCcccCCCeEEEEeCC-cEEEeeeCCCCCCCCCCcccCCCCCCCCc
Q 031152 8 LLKISGLYAQYIW------YFPIIGEKGTG-ASGKPLHFKGKPFHRIVSG-FVIQGGDIVRGDGKGSDSIYGGTFPDENF 79 (165)
Q Consensus 8 ~rivieL~~d~aP------~~l~~g~~g~~-~~~~~~~Y~g~~f~rii~~-~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~ 79 (165)
=||+||||.|.|| +.||+|+.+.+ ..+++.+|+++.||||+++ ++||+||+.. .+.+++|..+++|++
T Consensus 67 GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~----~g~s~~G~~f~dE~~ 142 (249)
T PTZ00221 67 GRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS----FNVSSTGTPIADEGY 142 (249)
T ss_pred ceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC----CCccCCCCcccCccc
Confidence 3899999999999 88999887653 2345567999999999986 8999999863 244677899999999
Q ss_pred cccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCC
Q 031152 80 KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKN 159 (165)
Q Consensus 80 ~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~ 159 (165)
.++|+++|+|||++.++++++||||||+.++|+||++|+|||||++||+||++|++.+++.+++|..+|+|.+||+|..+
T Consensus 143 ~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~~ 222 (249)
T PTZ00221 143 RHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGE 222 (249)
T ss_pred cccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 031152 160 KWDE 163 (165)
Q Consensus 160 ~~~~ 163 (165)
++.+
T Consensus 223 ~p~~ 226 (249)
T PTZ00221 223 KPPG 226 (249)
T ss_pred CCCc
Confidence 7754
No 5
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=3.3e-43 Score=268.01 Aligned_cols=148 Identities=51% Similarity=0.868 Sum_probs=134.7
Q ss_pred EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152 8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI 81 (165)
Q Consensus 8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~ 81 (165)
=||+||||.+.|| +.||++..... .++..||+++.||||+|+++||+||+...++.++.++|+..+++|...+
T Consensus 30 G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e~~~~ 108 (183)
T PTZ00060 30 GRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDENFKL 108 (183)
T ss_pred ceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCccccc
Confidence 3899999999999 78998765432 4467799999999999999999999987788888899999999998889
Q ss_pred cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152 82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP 157 (165)
Q Consensus 82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~ 157 (165)
.|+.+|+|||++.++++++||||||+.++|+||++|+|||||++|||||++|++..+ .+++|.++|+|.+||+|.
T Consensus 109 ~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~-~~~~P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 109 KHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGT-QSGYPKKPVVVTDCGELQ 183 (183)
T ss_pred cCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCC-CCCCCcCCeEEEEeEEcC
Confidence 999999999999999999999999999999999999999999999999999997665 578999999999999984
No 6
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=3.9e-43 Score=263.51 Aligned_cols=144 Identities=56% Similarity=0.986 Sum_probs=132.6
Q ss_pred EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152 8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI 81 (165)
Q Consensus 8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~ 81 (165)
=+|+||||.+.|| +.||++.+|.+. +..||+++.||||+|+|+||+||+...++.++.++|+..+++|...+
T Consensus 15 G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e~~~~ 92 (164)
T cd01926 15 GRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKL 92 (164)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCCCccc
Confidence 3899999999999 789987666322 44579999999999999999999877788888899999999998889
Q ss_pred cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeee
Q 031152 82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 154 (165)
Q Consensus 82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg 154 (165)
.|+.+|+|||++.++++++|||||+++++|+||++|+|||||++|||||++|++.+++ +++|..+|+|.+||
T Consensus 93 ~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I~~cG 164 (164)
T cd01926 93 KHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164 (164)
T ss_pred cCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence 9989999999999999999999999999999999999999999999999999999988 99999999999997
No 7
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=7.2e-43 Score=260.82 Aligned_cols=143 Identities=36% Similarity=0.571 Sum_probs=131.9
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI 81 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~ 81 (165)
||+||||.+.|| +.||+ .+||+++.||||+|+|+||+||+. .++.++.++|+..+++|.. .+
T Consensus 10 ~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~ 78 (159)
T cd01923 10 DLNLELHCDKAPKACENFIKLCK----------KGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNL 78 (159)
T ss_pred cEEEEEeCCCChHHHHHHHHHHh----------cCccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCc
Confidence 799999999999 66773 336999999999999999999985 6778888999999999954 67
Q ss_pred cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCCCC
Q 031152 82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKW 161 (165)
Q Consensus 82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~~ 161 (165)
.|+.+|+|||+++++++++||||||++++|+||++|+|||||++|||+|++|++.+++++++|+.+|+|.+|+++.+|+.
T Consensus 79 ~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf~ 158 (159)
T cd01923 79 SHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPFE 158 (159)
T ss_pred CcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCCC
Confidence 89899999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 031152 162 D 162 (165)
Q Consensus 162 ~ 162 (165)
+
T Consensus 159 ~ 159 (159)
T cd01923 159 E 159 (159)
T ss_pred C
Confidence 4
No 8
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=3.7e-43 Score=268.22 Aligned_cols=147 Identities=44% Similarity=0.744 Sum_probs=133.8
Q ss_pred EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152 8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI 81 (165)
Q Consensus 8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~ 81 (165)
=||+||||.+.+| +.||+++.. ..+....|+++.||||+|+|+|||||+..++++++.++|+..+++|...+
T Consensus 33 G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~~~~ 110 (186)
T PLN03149 33 GRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENFIA 110 (186)
T ss_pred ccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCccccc
Confidence 3899999999999 789977642 11223349999999999999999999977888888899999999998888
Q ss_pred cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEE-cCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152 82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI-QGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156 (165)
Q Consensus 82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi-~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l 156 (165)
.|+.+|+|||++.++++++||||||+.++|+||++|+|||||+ +||+||++|+++.++++++|..+|+|.+||++
T Consensus 111 ~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 111 KHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred ccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 9999999999999999999999999999999999999999999 79999999999999999999999999999985
No 9
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.2e-42 Score=261.33 Aligned_cols=144 Identities=33% Similarity=0.472 Sum_probs=128.5
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccC-------CCCC
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYG-------GTFP 75 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g-------~~~~ 75 (165)
||+||||.+.|| +.||+ ..||+++.||||+|+|+|||||+. .++.++.++++ ..++
T Consensus 8 ~i~ieL~~~~aP~t~~nF~~L~~----------~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~ 76 (166)
T cd01921 8 DLVIDLFTDECPLACLNFLKLCK----------LKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFE 76 (166)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHh----------cCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccC
Confidence 799999999999 67883 346999999999999999999996 56666666654 3466
Q ss_pred CCCc-cccCCcceEEEEecCCCCCCCceEEEEcCC-CCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeee
Q 031152 76 DENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVK-ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADS 153 (165)
Q Consensus 76 ~e~~-~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~-~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~c 153 (165)
+|.. .++|+.+|+||||+.++++++||||||+.+ +|+||++|+|||||++|||||++|++.+++++++|..+|+|.+|
T Consensus 77 ~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~ 156 (166)
T cd01921 77 PEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHT 156 (166)
T ss_pred cccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEE
Confidence 6654 678989999999999999999999999975 89999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 031152 154 GEIPKNKWDE 163 (165)
Q Consensus 154 g~l~~~~~~~ 163 (165)
++|.+|+.|+
T Consensus 157 ~i~~~pf~~~ 166 (166)
T cd01921 157 HILDDPFPDP 166 (166)
T ss_pred EEECCCCCCC
Confidence 9999999885
No 10
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-44 Score=272.14 Aligned_cols=143 Identities=49% Similarity=0.847 Sum_probs=138.5
Q ss_pred eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcc
Q 031152 7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK 80 (165)
Q Consensus 7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~ 80 (165)
.-||++.|..|..| ++||+++.|++ |+|++||||||.|++||||.++++|+|+.|+||..|.+|++.
T Consensus 150 ~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ngtggksiygkkfddenf~ 222 (298)
T KOG0111|consen 150 AGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDENFT 222 (298)
T ss_pred cceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCCCCCccccccccccccee
Confidence 45999999999999 89999999998 999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeec
Q 031152 81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIP 157 (165)
Q Consensus 81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~ 157 (165)
++|..+|+||||++|+|+||||||||+....|||++|+|||.|++||+|+++++ ...++.++|...|.|.+||.+.
T Consensus 223 lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e-~qgsksgkp~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 223 LKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVE-QQGSKSGKPQQKVKIVECGEIE 298 (298)
T ss_pred eecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHH-hccCCCCCcceEEEEEeccccC
Confidence 999999999999999999999999999999999999999999999999999999 6778899999999999999873
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.2e-41 Score=251.55 Aligned_cols=133 Identities=40% Similarity=0.662 Sum_probs=123.3
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI 81 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~ 81 (165)
||+||||.+.|| +.||+ ..||+++.||||+|+|+||+||+. +++.++.++|+..+++|.. .+
T Consensus 8 ~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~ 76 (148)
T cd01927 8 DIHIRLFPEEAPKTVENFTTHAR----------NGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSL 76 (148)
T ss_pred cEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccccccc
Confidence 799999999999 66773 346999999999999999999985 6778888899999999976 78
Q ss_pred cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEee
Q 031152 82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152 (165)
Q Consensus 82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~ 152 (165)
+|+++|+|||++.++++++|||||++.++|+||++|+|||||++|||||++|++.+++++++|.++|+|.+
T Consensus 77 ~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 77 KHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred CcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 89989999999999999999999999999999999999999999999999999999999999999999986
No 12
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-43 Score=248.15 Aligned_cols=143 Identities=38% Similarity=0.621 Sum_probs=127.1
Q ss_pred EEEEEEcCCccccceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cccCCcce
Q 031152 9 LKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KIKHSHAG 87 (165)
Q Consensus 9 rivieL~~d~aP~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~~h~~~G 87 (165)
-|++|||-+.|| ..|......+ +.+||+|+.||||+++|+||||||+ ++|.|+.|+||..|++|-. .++|..+|
T Consensus 20 ~i~~ElY~kHaP-~TC~NF~eLa---rrgYYn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF~DEi~~dLkhTGAG 94 (164)
T KOG0881|consen 20 KITLELYWKHAP-RTCQNFAELA---RRGYYNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKFEDEIHSDLKHTGAG 94 (164)
T ss_pred ceehhhhhhcCc-HHHHHHHHHH---hcccccceeeeehhhhheeecCCCC-CCCCCccccccchhhhhhhhhhcccchh
Confidence 478999999999 2222211111 3347999999999999999999996 8999999999999999954 89999999
Q ss_pred EEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152 88 VVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156 (165)
Q Consensus 88 ~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l 156 (165)
.||||+.+||+|+|||||||.+.+|||++|++||||..||+|+.+|..+.++.+++|+.+++|.++-.+
T Consensus 95 ILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~~ 163 (164)
T KOG0881|consen 95 ILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYPS 163 (164)
T ss_pred hhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999887543
No 13
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=252.23 Aligned_cols=135 Identities=41% Similarity=0.680 Sum_probs=119.4
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcccc
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~ 82 (165)
||+|+||++.|| ..|| +.+||+|+.||||+|+|+|||||+....+.++. +.++++|+....
T Consensus 10 ~I~ieL~~~~aP~Tv~NF~~l~----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~~ 76 (158)
T COG0652 10 DITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFALN 76 (158)
T ss_pred CEEEEECCCcCcHHHHHHHHHH----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccccc
Confidence 699999999999 5666 344799999999999999999999877788877 588999988777
Q ss_pred CCc--ceEEEEecCC-CCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC----CCCCcceEEeeeee
Q 031152 83 HSH--AGVVSMVNSG-PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYS----GKPRKKVTIADSGE 155 (165)
Q Consensus 83 h~~--~G~lsm~~~~-~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~----~~P~~~i~I~~cg~ 155 (165)
|++ +|+||||+.+ |++++|||||++.++|+||++|+|||+|++|||+|++|++..+... ..|..+++|.+..+
T Consensus 77 ~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~ 156 (158)
T COG0652 77 GDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI 156 (158)
T ss_pred cccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence 776 9999999998 9999999999999999999999999999999999999998777654 45667888888766
Q ss_pred e
Q 031152 156 I 156 (165)
Q Consensus 156 l 156 (165)
+
T Consensus 157 ~ 157 (158)
T COG0652 157 V 157 (158)
T ss_pred e
Confidence 4
No 14
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=1.8e-41 Score=251.76 Aligned_cols=135 Identities=40% Similarity=0.595 Sum_probs=124.8
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI 81 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~ 81 (165)
||+||||++.|| +.||+ ..||+++.|||++|+|++|+||+. +++.++.++|+..+++|.. .+
T Consensus 11 ~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~ 79 (153)
T cd01928 11 DIKIELFCDDCPKACENFLALCA----------SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETL 79 (153)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHh----------cCccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCC
Confidence 799999999999 77884 236999999999999999999985 6677788889999999976 67
Q ss_pred cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeee
Q 031152 82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 154 (165)
Q Consensus 82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg 154 (165)
.|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|++.+++++++|..+|+|.+|.
T Consensus 80 ~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 80 KHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred CcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999984
No 15
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=8e-41 Score=246.57 Aligned_cols=132 Identities=40% Similarity=0.692 Sum_probs=120.6
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCC-ccc
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDEN-FKI 81 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~-~~~ 81 (165)
||+||||.+.|| +.||+ .+||+++.|||++|+|+|||||+. +++.++.++|+..+++|. ..+
T Consensus 8 ~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~ 76 (146)
T cd01922 8 EITLELYWNHAPKTCKNFYELAK----------RGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPEL 76 (146)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCc
Confidence 799999999999 66773 346999999999999999999985 567778888999999985 478
Q ss_pred cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEee
Q 031152 82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152 (165)
Q Consensus 82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~ 152 (165)
+|+++|+|||++.++++++|||||+++++|+||++|+|||||++|||||++|++.+++ +++|..+|+|.+
T Consensus 77 ~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 77 KHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 8999999999999999999999999999999999999999999999999999998888 889999999963
No 16
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=275.55 Aligned_cols=141 Identities=37% Similarity=0.587 Sum_probs=133.5
Q ss_pred EEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-ccc
Q 031152 10 KISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KIK 82 (165)
Q Consensus 10 ivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~~ 82 (165)
+-|||++|.+| ..|| +.+||+|+.|||.|.+||||||||+ ++|.||.|+||.+|.||.. .+.
T Consensus 289 lNlELhcd~~P~aceNFI~lc----------~~gYYnnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDEf~~~l~ 357 (518)
T KOG0883|consen 289 LNLELHCDYAPRACENFITLC----------KNGYYNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFCSNLS 357 (518)
T ss_pred eeeEeecCcchHHHHHHHHHH----------hcccccchHHHHHHHHHeeeCCCCC-CCCCCCccccCCccccccCCCCC
Confidence 56999999999 6788 5568999999999999999999996 9999999999999999965 899
Q ss_pred CCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCCCC
Q 031152 83 HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNKW 161 (165)
Q Consensus 83 h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~~ 161 (165)
|+.+|+||||++|||+|||||||+..++.+||++|+||||||.|+++|.+|+.+++++.++|+.+|+|.+.-|..+|+-
T Consensus 358 H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFVdPfe 436 (518)
T KOG0883|consen 358 HDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFVDPFE 436 (518)
T ss_pred cCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEeeCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887753
No 17
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.4e-39 Score=245.70 Aligned_cols=144 Identities=33% Similarity=0.470 Sum_probs=131.1
Q ss_pred EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-c
Q 031152 8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-K 80 (165)
Q Consensus 8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~ 80 (165)
=+|+||||.+.+| +.||+ ..||+++.|||++|+|+|||||+. +++.++.++|+..+++|.. .
T Consensus 15 G~i~ieL~~~~~P~t~~nF~~L~~----------~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g~~~~~E~~~~ 83 (171)
T cd01925 15 GDIDIELWSKEAPKACRNFIQLCL----------EGYYDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYGEPFKDEFHSR 83 (171)
T ss_pred ccEEEEEeCCCChHHHHHHHHHHh----------cCCCCCCEEEEEcCCcEEEccccC-CCCccCcccCCCccCcccccC
Confidence 3799999999999 66773 336999999999999999999986 6778888999999999965 5
Q ss_pred ccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEc-CHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCC
Q 031152 81 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQ-GMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKN 159 (165)
Q Consensus 81 ~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~-G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~ 159 (165)
+.|+++|+|+|++.++++++|||||+++++|+||++|+|||||++ +++++++|++..++++++|..+|+|.+|+++.++
T Consensus 84 ~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~p 163 (171)
T cd01925 84 LRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLENP 163 (171)
T ss_pred cCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcCC
Confidence 778899999999999999999999999999999999999999994 6899999999999999999999999999999988
Q ss_pred CCC
Q 031152 160 KWD 162 (165)
Q Consensus 160 ~~~ 162 (165)
+.|
T Consensus 164 f~~ 166 (171)
T cd01925 164 FDD 166 (171)
T ss_pred chh
Confidence 765
No 18
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-39 Score=267.38 Aligned_cols=139 Identities=41% Similarity=0.643 Sum_probs=128.5
Q ss_pred EEEEEEcCCccc---cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cccCC
Q 031152 9 LKISGLYAQYIW---YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KIKHS 84 (165)
Q Consensus 9 rivieL~~d~aP---~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~~h~ 84 (165)
-|.|.||+++|| ..+|+.. +.+||+|..|||||++||||+|||+ ++|+||.|+||..|+||.. .++|+
T Consensus 415 di~~kl~p~ecpktvenf~th~-------rngyy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfedefh~~lrhd 486 (558)
T KOG0882|consen 415 DIHIKLYPEECPKTVENFTTHS-------RNGYYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDEFHPNLRHD 486 (558)
T ss_pred ceEEEecccccchhhhhhhccc-------cCccccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhhcCcccccC
Confidence 378999999999 5556433 3447999999999999999999996 9999999999999999976 89999
Q ss_pred cceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeee
Q 031152 85 HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 155 (165)
Q Consensus 85 ~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~ 155 (165)
++-+|||||.|+|+||||||||..+.||||++|+|||||+.||||+++|+++.+++.++|.+++.|.+.-+
T Consensus 487 rpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 487 RPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred CCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999988643
No 19
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=3.9e-38 Score=241.21 Aligned_cols=136 Identities=27% Similarity=0.364 Sum_probs=115.9
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcccc
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~ 82 (165)
||+||||.+.|| +.|| +.+||+|+.|||++|+|+|||||+....+ ...++.++.+|.....
T Consensus 39 ~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e~~~~l 105 (190)
T PRK10903 39 NIELELNSQKAPVSVKNFVDYV----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEADNGL 105 (190)
T ss_pred cEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCcccCcccccC
Confidence 699999999999 6677 33479999999999999999999864322 1234667888865555
Q ss_pred CCcceEEEEecCC-CCCCCceEEEEcCCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCC----CCCCCcceEEee
Q 031152 83 HSHAGVVSMVNSG-PDSNGSQFFITTVKASWLDG-----EHVVFGKVIQGMDTVYAIEGGAGTY----SGKPRKKVTIAD 152 (165)
Q Consensus 83 h~~~G~lsm~~~~-~~~~~sqF~Itl~~~~~ld~-----~~~vFGrVi~G~evl~~I~~~~~~~----~~~P~~~i~I~~ 152 (165)
|+.+|+|||++.+ +++++|||||++.++++||+ +|+|||+|++|||||++|++.++++ +++|..+|+|.+
T Consensus 106 ~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~ 185 (190)
T PRK10903 106 RNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS 185 (190)
T ss_pred cCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEE
Confidence 6679999999865 99999999999999999984 8999999999999999999988876 579999999999
Q ss_pred eeeec
Q 031152 153 SGEIP 157 (165)
Q Consensus 153 cg~l~ 157 (165)
|++++
T Consensus 186 ~~v~~ 190 (190)
T PRK10903 186 AKVLP 190 (190)
T ss_pred EEEeC
Confidence 99874
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.7e-37 Score=232.80 Aligned_cols=135 Identities=26% Similarity=0.377 Sum_probs=112.6
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCcccc
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 82 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~ 82 (165)
+|+|+||.+.|| +.||+ ..||+++.||||+|+|+|||||+..+.+. ..++..+++|.....
T Consensus 10 ~i~ieL~~~~aP~t~~nF~~L~~----------~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~~ 76 (164)
T PRK10791 10 DIVIKTFDDKAPETVKNFLDYCR----------EGFYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGL 76 (164)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcccccc
Confidence 799999999999 67773 34799999999999999999997544322 223567777854333
Q ss_pred CCcceEEEEecCC-CCCCCceEEEEcCCCCCCC-------C-CCcEEEEEEcCHHHHHHHhcCCCCC----CCCCCcceE
Q 031152 83 HSHAGVVSMVNSG-PDSNGSQFFITTVKASWLD-------G-EHVVFGKVIQGMDTVYAIEGGAGTY----SGKPRKKVT 149 (165)
Q Consensus 83 h~~~G~lsm~~~~-~~~~~sqF~Itl~~~~~ld-------~-~~~vFGrVi~G~evl~~I~~~~~~~----~~~P~~~i~ 149 (165)
|+.+|+||||+.+ +++++|||||++.++++|| + +|+|||||++|||||++|++.+++. +++|..+|+
T Consensus 77 ~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~ 156 (164)
T PRK10791 77 KNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVI 156 (164)
T ss_pred cCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeE
Confidence 4479999999875 9999999999999988876 2 7999999999999999999988876 379999999
Q ss_pred Eeeeeee
Q 031152 150 IADSGEI 156 (165)
Q Consensus 150 I~~cg~l 156 (165)
|.+|.+.
T Consensus 157 I~~~~i~ 163 (164)
T PRK10791 157 IESVTVS 163 (164)
T ss_pred EEEEEEe
Confidence 9999764
No 21
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=5.9e-37 Score=228.06 Aligned_cols=133 Identities=29% Similarity=0.348 Sum_probs=112.5
Q ss_pred EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152 8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI 81 (165)
Q Consensus 8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~ 81 (165)
=+|+|+||.+.|| +.||+ .+||+++.||||+|+|+|||||+....+. ..++.++++|....
T Consensus 7 G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~ 73 (155)
T cd01920 7 GDIVVELYDDKAPITVENFLAYVR----------KGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNG 73 (155)
T ss_pred eeEEEEEeCCCCcHHHHHHHHHHh----------cCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCccccc
Confidence 3899999999999 67773 34799999999999999999998644322 23356777786655
Q ss_pred cCCcceEEEEecCC-CCCCCceEEEEcCCCCCCCC-----CCcEEEEEEcCHHHHHHHhcCCCCCC----CCCCcceEEe
Q 031152 82 KHSHAGVVSMVNSG-PDSNGSQFFITTVKASWLDG-----EHVVFGKVIQGMDTVYAIEGGAGTYS----GKPRKKVTIA 151 (165)
Q Consensus 82 ~h~~~G~lsm~~~~-~~~~~sqF~Itl~~~~~ld~-----~~~vFGrVi~G~evl~~I~~~~~~~~----~~P~~~i~I~ 151 (165)
.|+.+|+||||+.+ +++++|||||++.++|+||. +|+|||+|++|||||++|++++++.. ++|..+|+|.
T Consensus 74 ~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~ 153 (155)
T cd01920 74 LSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIE 153 (155)
T ss_pred ccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEE
Confidence 56779999999875 89999999999999999995 79999999999999999999998774 6999999998
Q ss_pred ee
Q 031152 152 DS 153 (165)
Q Consensus 152 ~c 153 (165)
++
T Consensus 154 ~~ 155 (155)
T cd01920 154 SA 155 (155)
T ss_pred EC
Confidence 63
No 22
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.2e-35 Score=218.43 Aligned_cols=133 Identities=48% Similarity=0.756 Sum_probs=117.6
Q ss_pred EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccc
Q 031152 8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI 81 (165)
Q Consensus 8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~ 81 (165)
=+|+|+||.+.|| +.||+. .||+++.|||++|+++||+||+......+ +.++..+++|....
T Consensus 7 G~i~IeL~~~~~P~~~~nF~~l~~~----------~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~ 74 (146)
T cd00317 7 GRIVIELYGDEAPKTVENFLSLARG----------GFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPL 74 (146)
T ss_pred CcEEEEEcCCCChHHHHHHHHHHhc----------CCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccC
Confidence 4799999999999 677742 36999999999999999999986544322 45577889997765
Q ss_pred c-CCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEee
Q 031152 82 K-HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152 (165)
Q Consensus 82 ~-h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~ 152 (165)
. |+.+|+|+|++.++++++|||||++.++++||++|+|||||++||++|++|++.+++++++|..+|+|.+
T Consensus 75 ~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 75 KYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred cCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 5 8889999999999999999999999999999999999999999999999999999999999999999974
No 23
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=212.95 Aligned_cols=140 Identities=36% Similarity=0.505 Sum_probs=128.0
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI 81 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~ 81 (165)
-|-||||.+.+| +.+| ...||+++.|||-+|+|++|+||++ .+|.|+.|+||..|++|.. -+
T Consensus 11 dikiev~~e~tpktce~~l~~~----------~~~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~l 79 (161)
T KOG0884|consen 11 DIKIEVFCERTPKTCENFLALC----------ASDYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYL 79 (161)
T ss_pred cEEEEEEecCChhHHHHHHHHh----------hhhhccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHH
Confidence 378999999999 4455 2237999999999999999999996 8899999999999999976 78
Q ss_pred cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCCCcceEEeeeeeecCC
Q 031152 82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYS-GKPRKKVTIADSGEIPKN 159 (165)
Q Consensus 82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~-~~P~~~i~I~~cg~l~~~ 159 (165)
+|+.+|.||||++||++|+||||||.+.+|+||-+|+|||+||+|+|+|+.|+..++++. .+|..++.|.+..+-..|
T Consensus 80 kh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itihanp 158 (161)
T KOG0884|consen 80 KHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANP 158 (161)
T ss_pred hhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEecCc
Confidence 999999999999999999999999999999999999999999999999999999999876 899999999998775544
No 24
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-36 Score=222.49 Aligned_cols=141 Identities=52% Similarity=0.879 Sum_probs=133.6
Q ss_pred EEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEE---eCCcEEEeeeCCCCCCCCCCcccCCCCCCCC
Q 031152 8 LLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRI---VSGFVIQGGDIVRGDGKGSDSIYGGTFPDEN 78 (165)
Q Consensus 8 ~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~ri---i~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~ 78 (165)
-|++++||.|..| +.||+|++|.+ |++++|||+ +++|++||||.+..+++++.|+|++.|+||+
T Consensus 18 gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~Den 90 (167)
T KOG0865|consen 18 GRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDEN 90 (167)
T ss_pred cccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccCCccceEecccccCCcC
Confidence 4689999999999 77999999987 999999993 3479999999999999999999999999999
Q ss_pred ccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152 79 FKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156 (165)
Q Consensus 79 ~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l 156 (165)
+.++|..+|.||||+.+||+++||||||+....|||++|+|||+|.+||+++++|+ .....++++..+|.|.+||.|
T Consensus 91 FilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e-~~gs~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 91 FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAME-RFGSRNGKTSKKITIADCGQL 167 (167)
T ss_pred cEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhh-ccCCcCCcccccEEEecCCcC
Confidence 99999999999999999999999999999999999999999999999999999999 588899999999999999975
No 25
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=9.9e-35 Score=215.41 Aligned_cols=136 Identities=43% Similarity=0.648 Sum_probs=115.1
Q ss_pred eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCC-CcccCCCCCCCCc
Q 031152 7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGS-DSIYGGTFPDENF 79 (165)
Q Consensus 7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~-~s~~g~~~~~e~~ 79 (165)
.=||+||||++.|| +.||+ . .+|+++.|||++|+++||+|++......+. ....+..+++|..
T Consensus 9 ~G~i~ieL~~~~aP~~~~nF~~l~~--~--------~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~ 78 (155)
T PF00160_consen 9 LGRIVIELFGDEAPKTVENFLRLCT--S--------GFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFN 78 (155)
T ss_dssp EEEEEEEEETTTSHHHHHHHHHHHH--T--------TSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGB
T ss_pred ccCEEEEEeCCCCcHHHHhhehhhc--c--------cccCCceeecccccceeeeeeccCCCCcccccccCccccccccc
Confidence 46999999999999 67774 2 259999999999999999999865443111 1223556888874
Q ss_pred --cccCCcceEEEEecCC--CCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeee
Q 031152 80 --KIKHSHAGVVSMVNSG--PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 155 (165)
Q Consensus 80 --~~~h~~~G~lsm~~~~--~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~ 155 (165)
.+.| ++|+|+|++.+ +++++|||||+|.+.++||++|+|||+|++||++|++|++..++. +|.++|+|.+|||
T Consensus 79 ~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 79 PSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp TTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred cccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 4556 79999999975 889999999999999999999999999999999999999877776 9999999999997
No 26
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=234.24 Aligned_cols=144 Identities=35% Similarity=0.487 Sum_probs=133.6
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCC-------CC
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGT-------FP 75 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~-------~~ 75 (165)
-|||.||.+.+| ++|| |..||+.+.||.|..+|.+|+|||+ ++|.||.|+|+.. |+
T Consensus 11 DlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffe 79 (479)
T KOG0415|consen 11 DLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFE 79 (479)
T ss_pred cEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhh
Confidence 379999999999 8899 6778999999999999999999997 6999999998543 56
Q ss_pred CCCc-cccCCcceEEEEecCCCCCCCceEEEEcCC-CCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeee
Q 031152 76 DENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVK-ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADS 153 (165)
Q Consensus 76 ~e~~-~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~-~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~c 153 (165)
.|.. .++|...|+|||++.|.|.+||||||||+. +.+||++|+|||+|.+|||+|.+|+.+.++.+++|+++|+|.+.
T Consensus 80 aE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HT 159 (479)
T KOG0415|consen 80 AEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHT 159 (479)
T ss_pred hhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeee
Confidence 6654 789999999999999999999999999987 58999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 031152 154 GEIPKNKWDE 163 (165)
Q Consensus 154 g~l~~~~~~~ 163 (165)
-+|.+||.++
T Consensus 160 iiLdDPFddp 169 (479)
T KOG0415|consen 160 IILDDPFDDP 169 (479)
T ss_pred EEecCCCCCc
Confidence 9999999886
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=9.4e-34 Score=214.67 Aligned_cols=119 Identities=28% Similarity=0.400 Sum_probs=97.3
Q ss_pred eEEEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCC-----------------
Q 031152 7 KLLKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDG----------------- 63 (165)
Q Consensus 7 ~~rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~----------------- 63 (165)
.=+|+|+||++.|| +.|| +..||+++.||||+|+|+|||||+.....
T Consensus 6 ~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~ 75 (176)
T cd01924 6 NGTITIVLDGYNAPVTAGNFVDLV----------ERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEI 75 (176)
T ss_pred cceEEEEEcCCCCCHHHHHHHHHH----------HhCCcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccccee
Confidence 34899999999999 7788 34479999999999999999999864321
Q ss_pred ---CCCCcccCCCCC-----CCCccccCCcceEEEEecCC--CCCCCceEEEEcC-------CCCCCCCCCcEEEEEEcC
Q 031152 64 ---KGSDSIYGGTFP-----DENFKIKHSHAGVVSMVNSG--PDSNGSQFFITTV-------KASWLDGEHVVFGKVIQG 126 (165)
Q Consensus 64 ---~~~~s~~g~~~~-----~e~~~~~h~~~G~lsm~~~~--~~~~~sqF~Itl~-------~~~~ld~~~~vFGrVi~G 126 (165)
..+.+.|+..+. +++....|+.+|+||||+.+ +++++|||||+++ ++|+||++|+|||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG 155 (176)
T cd01924 76 KPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDG 155 (176)
T ss_pred cccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecC
Confidence 112244554432 34455677789999999987 6999999999998 799999999999999999
Q ss_pred HHHHHHHhc
Q 031152 127 MDTVYAIEG 135 (165)
Q Consensus 127 ~evl~~I~~ 135 (165)
||||++|+.
T Consensus 156 ~dvl~~I~~ 164 (176)
T cd01924 156 LDILRELKV 164 (176)
T ss_pred HHHHHhhcC
Confidence 999999983
No 28
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=227.82 Aligned_cols=143 Identities=31% Similarity=0.469 Sum_probs=132.9
Q ss_pred EEEEEEcCCccc------cceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCc-cc
Q 031152 9 LKISGLYAQYIW------YFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENF-KI 81 (165)
Q Consensus 9 rivieL~~d~aP------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~-~~ 81 (165)
-|.||||+..|| ..||. .+||+|+.|||++|+|++|||||+ ++|+||.|+||.+|.+|.. ++
T Consensus 23 ~I~iELW~kE~P~acrnFiqKOG----------egyy~nt~fhrlvp~f~~Qggdp~-~~gtGgesiyg~~fadE~h~Rl 91 (439)
T KOG0885|consen 23 DIDIELWAKECPKACRNFIQLCL----------EGYYDNTEFHRLVPGFLVQGGDPT-GTGTGGESIYGRPFADEFHPRL 91 (439)
T ss_pred ceeeeehhhhhhHHHHHHHHHHH----------hccccCceeeeeccchhcccCCCC-CCCCCccccccccchhhcCcce
Confidence 378999999999 67883 347999999999999999999995 9999999999999999966 88
Q ss_pred cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEc-CHHHHHHHhcCCCCCCCCCCcceEEeeeeeecCCC
Q 031152 82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQ-GMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNK 160 (165)
Q Consensus 82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~-G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~ 160 (165)
++.++|+|+||+.+.+.||||||+||+++|+|+++|++||+|+. -+-.+-+|..+.++.+.||..+-+|.+|.|+-.+|
T Consensus 92 rf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~npF 171 (439)
T KOG0885|consen 92 RFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLINPF 171 (439)
T ss_pred eeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeecCch
Confidence 99999999999999999999999999999999999999999995 77888899989999999999999999999999887
Q ss_pred CC
Q 031152 161 WD 162 (165)
Q Consensus 161 ~~ 162 (165)
.|
T Consensus 172 dD 173 (439)
T KOG0885|consen 172 DD 173 (439)
T ss_pred hh
Confidence 66
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00011 Score=62.46 Aligned_cols=143 Identities=18% Similarity=0.141 Sum_probs=103.1
Q ss_pred EEEEEEcCCccccceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCccc--CC---CCCC--CCccc
Q 031152 9 LKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIY--GG---TFPD--ENFKI 81 (165)
Q Consensus 9 rivieL~~d~aP~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~--g~---~~~~--e~~~~ 81 (165)
-|.++|+.+-.|...- + .+..-...|+++..|.+|...+++|.||.......+|.--| +. .+++ .+..+
T Consensus 113 ~IAVs~~~sg~i~VvD-~---~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVD-G---FGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred eEEeecccCCCcEEEC-C---cCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence 5677777777771111 0 00111455799999999999999999987544333332111 11 1222 24467
Q ss_pred cCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 031152 82 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 156 (165)
Q Consensus 82 ~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~i~I~~cg~l 156 (165)
+|. .-++..........+-+|++.-...+.+..+..|||++..|-++++.|.+..++....|..++.|.+....
T Consensus 189 K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Velg 262 (558)
T KOG0882|consen 189 KHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELG 262 (558)
T ss_pred ccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehh
Confidence 775 66666666666667889999999999999999999999999999999999999999999999999887653
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=93.04 E-value=1 Score=39.32 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=61.9
Q ss_pred eeEEEEEEEcCCccccceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccccCCc
Q 031152 6 QKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85 (165)
Q Consensus 6 ~~~rivieL~~d~aP~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~h~~ 85 (165)
+..-|.|+||.|.||+.+-...+-.+...+. -=-..+|-..++.++-=|+. .+...+.+||.+-.-..
T Consensus 373 ~~~vi~IeLydd~AP~s~~yFRk~tGL~~~~--VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~~~V~ 440 (503)
T TIGR03268 373 KDKVIEIELYDDNAPRSVWYFRKFTGLKTKP--VGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPEDKVE 440 (503)
T ss_pred hHhEEEEEEcccCCchHHHHHHHhcCCcccc--cceeEEEEEeCCeeEeccCc----------hhccccCCCCCCCCccc
Confidence 3445899999999993322111111100000 01235556667754443322 22445666766555666
Q ss_pred ceEEEEecCCCCCCCceEEEEc------CCC-CCCCCCCcEEEEEEcCHHHHHHHhc
Q 031152 86 AGVVSMVNSGPDSNGSQFFITT------VKA-SWLDGEHVVFGKVIQGMDTVYAIEG 135 (165)
Q Consensus 86 ~G~lsm~~~~~~~~~sqF~Itl------~~~-~~ld~~~~vFGrVi~G~evl~~I~~ 135 (165)
+|.++|-|......| -.=|-+ +|. ..+++.+ ++|+|++++|.|.++.+
T Consensus 441 ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~Ke 495 (503)
T TIGR03268 441 AGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKE 495 (503)
T ss_pred cceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCcc-eEEEecCChhHhccccc
Confidence 888888765322111 111222 232 2355545 55999999999998874
No 31
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=90.16 E-value=0.52 Score=41.07 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=39.2
Q ss_pred CCCCCCccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 031152 73 TFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE 134 (165)
Q Consensus 73 ~~~~e~~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~ 134 (165)
..+.|+.. .-.+|+|.+.+.|.+ ....||--.+-+ ..-.|+|+|+|+.|||+++--+
T Consensus 246 ~~p~En~~--~R~rGtVTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 246 DKPEENIE--KRRRGAVTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred cCCccccC--cccceeEEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence 34444433 234999999998754 245777765544 2346999999999999987554
No 32
>PRK00969 hypothetical protein; Provisional
Probab=89.88 E-value=3.3 Score=36.35 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=62.4
Q ss_pred eeEEEEEEEcCCccccceeeeccCCCCCCCCcccCCCeEEEEeCCcEEEeeeCCCCCCCCCCcccCCCCCCCCccccCCc
Q 031152 6 QKLLKISGLYAQYIWYFPIIGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSH 85 (165)
Q Consensus 6 ~~~rivieL~~d~aP~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~~~iq~Gd~~~~~~~~~~s~~g~~~~~e~~~~~h~~ 85 (165)
+..-|.|+||.|.||+.+-...+-.+...+. -=-.++|-..++.++-=|+. .+...+.+||.+-.-..
T Consensus 376 ~~~vi~IeLydd~AP~s~~yFR~~tGL~~~~--VG~L~v~F~~~d~~lFk~~~----------~~~k~liPEN~P~~~V~ 443 (508)
T PRK00969 376 KDKLIEIELYDDKAPRTVWYFRKVTGLKTKP--VGKLPVYFKYEDTYLFKGNI----------EYAKGLLPENTPEDKVK 443 (508)
T ss_pred HHHEEEEEEcCcCCchHHHHHHHhcCCcccc--cceeEEEEEeCCeEEEccCh----------hhccccCCCCCCCCccc
Confidence 3445899999999993322111111100000 00235666677765553332 22445667777666667
Q ss_pred ceEEEEecCCCCCCCceEEEEc------CCC-CCCCCCCcEEEEEEcCHHHHHHHhc
Q 031152 86 AGVVSMVNSGPDSNGSQFFITT------VKA-SWLDGEHVVFGKVIQGMDTVYAIEG 135 (165)
Q Consensus 86 ~G~lsm~~~~~~~~~sqF~Itl------~~~-~~ld~~~~vFGrVi~G~evl~~I~~ 135 (165)
+|.+++-|......| -.=|-+ +|. ..+++.+ ++|+|+ ++|-|.++.+
T Consensus 444 ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~gTN-IIGrVv-~~e~Lk~lKe 497 (508)
T PRK00969 444 AGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEGTN-IIGRVV-NLEKLKKLKE 497 (508)
T ss_pred cceEeeechhhhcCc-eEEEEccCCcccCCCCCCccCce-eEEEec-ChHHhccccc
Confidence 888888765322111 111222 332 2345544 569999 9999998874
No 33
>PRK00969 hypothetical protein; Provisional
Probab=89.70 E-value=0.54 Score=41.06 Aligned_cols=59 Identities=24% Similarity=0.428 Sum_probs=40.2
Q ss_pred CCCCCCCCccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 031152 71 GGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE 134 (165)
Q Consensus 71 g~~~~~e~~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~ 134 (165)
|...+.|+.. .-.+|+|++.+.|.+ ....||--.+-+ ..-.|+|+|+|+.|||+++--+
T Consensus 247 g~~~p~En~~--~R~~GtVTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 247 GLKIPEENFE--PRRRGTVTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred CccCCccccC--ccccceEEEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeeccc
Confidence 3334444433 234999999998754 345777765544 2346999999999999987554
No 34
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=89.69 E-value=0.46 Score=35.00 Aligned_cols=101 Identities=20% Similarity=0.109 Sum_probs=49.5
Q ss_pred eeEEEEEEEcCCccc-------cceeeeccCCCCCCCCcccCCCeEEEEeCC--cEEEeeeCCCCCCCCCCcccCCCCCC
Q 031152 6 QKLLKISGLYAQYIW-------YFPIIGEKGTGASGKPLHFKGKPFHRIVSG--FVIQGGDIVRGDGKGSDSIYGGTFPD 76 (165)
Q Consensus 6 ~~~rivieL~~d~aP-------~~l~~g~~g~~~~~~~~~Y~g~~f~rii~~--~~iq~Gd~~~~~~~~~~s~~g~~~~~ 76 (165)
+...++.+|..|.|| ..|- |.+..+|-...+ .++.-++.. ....+.
T Consensus 6 ~g~~~~A~l~~d~AP~Tcaa~~~~LP--------------~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~ 60 (147)
T PF12903_consen 6 RGVSFTARLLDDKAPKTCAAFWEALP--------------LKGKVIHARWSGEEIWIPLPDFD-----------PFEPGR 60 (147)
T ss_dssp TTEEEEEEE-TTTSHHHHHHHHHH----------------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S
T ss_pred CCeEEEEEEcccCChHHHHHHHHhCC--------------CCCcEEEEEEECcEEEEECCCcC-----------cCCCCC
Confidence 456789999999999 2332 556666666555 355555542 112344
Q ss_pred CCccccCCcceEEEEec---CCCC--CC-CceEEEEcCCC--------CCCCCCCcEEEEEEcCHHHHHHHh
Q 031152 77 ENFKIKHSHAGVVSMVN---SGPD--SN-GSQFFITTVKA--------SWLDGEHVVFGKVIQGMDTVYAIE 134 (165)
Q Consensus 77 e~~~~~h~~~G~lsm~~---~~~~--~~-~sqF~Itl~~~--------~~ld~~~~vFGrVi~G~evl~~I~ 134 (165)
||..... .+|-|.+.= ...+ .. -++.-|..+.. -++-+ .+|++|++|+|-|.++-
T Consensus 61 EN~T~~P-~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~ 129 (147)
T PF12903_consen 61 ENHTVTP-IPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEAC 129 (147)
T ss_dssp -SEESS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHH
T ss_pred CcCcccC-CCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHH
Confidence 5554333 478877761 1111 11 13333333332 22333 56999999999988775
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=88.87 E-value=1.3 Score=37.82 Aligned_cols=19 Identities=16% Similarity=0.553 Sum_probs=16.3
Q ss_pred CcEEEEEEcCHHHHHHHhc
Q 031152 117 HVVFGKVIQGMDTVYAIEG 135 (165)
Q Consensus 117 ~~vFGrVi~G~evl~~I~~ 135 (165)
.-++|+|++|.+-|..|.+
T Consensus 480 TNiIGrIveg~e~l~~ike 498 (512)
T COG4070 480 TNIIGRIVEGPERLIGIKE 498 (512)
T ss_pred ceeehhhccChHHhccccc
Confidence 4577999999999999984
No 36
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=81.91 E-value=1 Score=38.34 Aligned_cols=59 Identities=25% Similarity=0.483 Sum_probs=40.2
Q ss_pred CCCCCCCCccccCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHHHh
Q 031152 71 GGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE 134 (165)
Q Consensus 71 g~~~~~e~~~~~h~~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~G~evl~~I~ 134 (165)
...++.|+..++ .+|.+++.+.|-+ ...-||--.+-+. .-.|.|.|||++|||+++--.
T Consensus 246 ~~~~~~en~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~ 304 (512)
T COG4070 246 EEKVPEENFDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAE 304 (512)
T ss_pred cccCChhhhhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEecc
Confidence 334555555444 4899999987644 3456776644332 236999999999999997654
No 37
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=62.60 E-value=10 Score=26.80 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=30.2
Q ss_pred CcceEEEEecCCCCCCCceEEEEcCCCCC-------CCCCCcEEEEEEcCHHHHHHHh
Q 031152 84 SHAGVVSMVNSGPDSNGSQFFITTVKASW-------LDGEHVVFGKVIQGMDTVYAIE 134 (165)
Q Consensus 84 ~~~G~lsm~~~~~~~~~sqF~Itl~~~~~-------ld~~~~vFGrVi~G~evl~~I~ 134 (165)
...|.|+.-..+.+ |.|-.++.|. +.....++||+++|.+.+..+.
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~ 112 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVK 112 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCC
Confidence 35888888765543 7777777753 4455789999999999998886
No 38
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=47.73 E-value=60 Score=20.38 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=27.7
Q ss_pred CCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCCCcc--eEEeeeeeec
Q 031152 113 LDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKK--VTIADSGEIP 157 (165)
Q Consensus 113 ld~~~~vFGrVi~G~evl~~I~~~~~~~~~~P~~~--i~I~~cg~l~ 157 (165)
+|.+-.++|+|++| -+.+|.-..+++++.-..+ =.|-++-.++
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G~I~d~~G~viGkae~~~ 60 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDGDILDKDGNVIGKAEPIE 60 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCCCEECCCCCEEEEEEeCC
Confidence 45667889999999 5566665667776654332 3455555554
No 39
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=33.52 E-value=29 Score=29.31 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=33.7
Q ss_pred cceEEEEecCCCCCCCceEEEEcCCCCCCCCCCcEEEEEEc-CHHHHHHHh
Q 031152 85 HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQ-GMDTVYAIE 134 (165)
Q Consensus 85 ~~G~lsm~~~~~~~~~sqF~Itl~~~~~ld~~~~vFGrVi~-G~evl~~I~ 134 (165)
.+|.|.+.|..-..-..+.-|++.+.|. |++.-|.|+|.+ -+..|+-|.
T Consensus 299 ~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~ 348 (357)
T PF05913_consen 299 KRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIK 348 (357)
T ss_dssp -TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--
T ss_pred cCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcC
Confidence 4999999998766666789999999985 888889999996 688888887
No 40
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=23.37 E-value=80 Score=18.94 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=19.9
Q ss_pred EcCHHHHHHHhcCCCCCCCCCCcceEEee
Q 031152 124 IQGMDTVYAIEGGAGTYSGKPRKKVTIAD 152 (165)
Q Consensus 124 i~G~evl~~I~~~~~~~~~~P~~~i~I~~ 152 (165)
+.|.+||..+.+. .......-+|+.++
T Consensus 4 ~sGv~vlRel~r~--~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 4 FSGVEVLRELARR--GGGRAAVMPVVFTS 30 (58)
T ss_pred ccHHHHHHHHHHh--cCCCCCcCCEEEeC
Confidence 4699999999976 44556666777665
No 41
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.65 E-value=79 Score=22.64 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=19.4
Q ss_pred CHHHH-HHHhcCCC--CCCCCCCcceEEeeeeee
Q 031152 126 GMDTV-YAIEGGAG--TYSGKPRKKVTIADSGEI 156 (165)
Q Consensus 126 G~evl-~~I~~~~~--~~~~~P~~~i~I~~cg~l 156 (165)
||||| ++|++... ..+..+...+.|...++.
T Consensus 19 Gmdvln~AI~~l~~~~~~~~w~~V~vsvaps~v~ 52 (124)
T cd01271 19 GMEILNSAIDNLMSSSNKEDWLSVNVNVAPSTIT 52 (124)
T ss_pred cHHHHHHHHHHHHhcCCcccCceEEEEeCCceEE
Confidence 99999 78875432 233445556666666654
Done!