BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031154
         (165 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AMK|A Chain A, Leishmania Mexicana Triose Phosphate Isomerase
          Length = 251

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 25/41 (60%)

Query: 121 EYIAQRLAKSQVSSFSVFEGVGRTLKGRDLSKVRDAVLTKT 161
           E +AQ+++++    F V   +G TL+ R+ ++    VL++T
Sbjct: 108 EIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQT 148


>pdb|1QDS|A Chain A, Superstable E65q Mutant Of Leishmania Mexicana
           Triosephosphate Isomerase (Tim)
 pdb|1IF2|A Chain A, X-Ray Structure Of Leishmania Mexicana Triosephosphate
           Isomerase Complexed With Ipp
 pdb|1N55|A Chain A, 0.83a Resolution Structure Of The E65q Mutant Of
           Leishmania Mexicana Triosephosphate Isomerase Complexed
           With 2-Phosphoglycolate
 pdb|2VXN|A Chain A, E65q-Tim Complexed With Phosphoglycolohydroxamate At 0.82
           A Resolution
 pdb|2Y61|A Chain A, Crystal Structure Of Leishmanial E65q-Tim Complexed With
           S-Glycidol Phosphate
 pdb|2Y62|A Chain A, Crystal Structure Of Leishmanial E65q-Tim Complexed With
           R-Glycidol Phosphate
 pdb|2Y63|A Chain A, Crystal Structure Of Leishmanial E65q-Tim Complexed With
           Bromohydroxyacetone Phosphate
          Length = 251

 Score = 28.5 bits (62), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 25/41 (60%)

Query: 121 EYIAQRLAKSQVSSFSVFEGVGRTLKGRDLSKVRDAVLTKT 161
           E +AQ+++++    F V   +G TL+ R+ ++    VL++T
Sbjct: 108 EIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQT 148


>pdb|2V5B|A Chain A, The Monomerization Of Triosephosphate Isomerase From
           Trypanosoma Cruzi
          Length = 244

 Score = 26.6 bits (57), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 120 HEYIAQRLAKSQVSSFSVFEGVGRTLKGRDLSKVRDAVLTK 160
           +E +A+++A++  + F V   VG T + R+  +    VLT+
Sbjct: 100 NEIVAEKVAQAXAAGFHVIVCVGETNEEREAGRTAAVVLTQ 140


>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
           D-Alanine Adenylate
          Length = 512

 Score = 26.6 bits (57), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 1   MESTDLSGSLRDGDFEEADVWEVLKERKDSNYSKVVIEAPDLSFERNLNLTSA 53
           ME  ++   LR   + E  V   +K+ +  +Y   V+   + SFE+   LTSA
Sbjct: 409 MELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSA 461


>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
           Magnesium
 pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
           Protein Ligase Dlta In Complex With Atp: Implications
           For Adenylation Mechanism
          Length = 512

 Score = 26.2 bits (56), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 1   MESTDLSGSLRDGDFEEADVWEVLKERKDSNYSKVVIEAPDLSFERNLNLTSA 53
           ME  ++   LR   + E  V   +K+ +  +Y   V+   + SFE+   LTSA
Sbjct: 409 MELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSA 461


>pdb|2OMA|A Chain A, Crystallographic Analysis Of A Chemically Modified
           Triosephosphate Isomerase From Trypanosoma Cruzi With
           Dithiobenzylamine (dtba)
 pdb|2OMA|B Chain B, Crystallographic Analysis Of A Chemically Modified
           Triosephosphate Isomerase From Trypanosoma Cruzi With
           Dithiobenzylamine (dtba)
          Length = 250

 Score = 26.2 bits (56), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 120 HEYIAQRLAKSQVSSFSVFEGVGRTLKGRDLSKVRDAVLTK 160
           +E +A+++A++  + F V   VG T + R+  +    VLT+
Sbjct: 106 NEIVAEKVAQAXAAGFHVIVCVGETNEEREAGRTAAVVLTQ 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,728,018
Number of Sequences: 62578
Number of extensions: 108975
Number of successful extensions: 324
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 24
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)