BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031154
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A9VQK2|DEOC_BACWK Deoxyribose-phosphate aldolase OS=Bacillus weihenstephanensis
(strain KBAB4) GN=deoC PE=3 SV=1
Length = 223
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGD--FEEADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD F E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNEFVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|Q6HK62|DEOC_BACHK Deoxyribose-phosphate aldolase OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=deoC PE=3 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|Q63CR9|DEOC_BACCZ Deoxyribose-phosphate aldolase OS=Bacillus cereus (strain ZK /
E33L) GN=deoC PE=3 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|C1EQH0|DEOC_BACC3 Deoxyribose-phosphate aldolase OS=Bacillus cereus (strain 03BB102)
GN=deoC PE=3 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|B7JJK4|DEOC_BACC0 Deoxyribose-phosphate aldolase OS=Bacillus cereus (strain AH820)
GN=deoC PE=3 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|Q81RZ3|DEOC_BACAN Deoxyribose-phosphate aldolase OS=Bacillus anthracis GN=deoC PE=3
SV=1
Length = 223
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|C3L6K8|DEOC_BACAC Deoxyribose-phosphate aldolase OS=Bacillus anthracis (strain CDC
684 / NRRL 3495) GN=deoC PE=3 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|C3P786|DEOC_BACAA Deoxyribose-phosphate aldolase OS=Bacillus anthracis (strain A0248)
GN=deoC PE=3 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|B7IS80|DEOC_BACC2 Deoxyribose-phosphate aldolase OS=Bacillus cereus (strain G9842)
GN=deoC PE=3 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|B7HIT0|DEOC_BACC4 Deoxyribose-phosphate aldolase OS=Bacillus cereus (strain B4264)
GN=deoC PE=3 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|Q81EY8|DEOC_BACCR Deoxyribose-phosphate aldolase OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=deoC PE=3 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDNELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|Q73A11|DEOC_BACC1 Deoxyribose-phosphate aldolase OS=Bacillus cereus (strain ATCC
10987) GN=deoC PE=3 SV=1
Length = 223
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDDELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|B9IXA5|DEOC_BACCQ Deoxyribose-phosphate aldolase OS=Bacillus cereus (strain Q1)
GN=deoC PE=3 SV=1
Length = 223
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDDELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|B7HMQ9|DEOC_BACC7 Deoxyribose-phosphate aldolase OS=Bacillus cereus (strain AH187)
GN=deoC PE=3 SV=1
Length = 223
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 GSLRDGDFE--EADVWEVLKERKDSNYSKVVIEAPDLSFERNL 48
G+L+DGD E E D++EV++ K KV+IE L+ E +
Sbjct: 95 GALKDGDDELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKV 137
>sp|Q3V080|ZN583_MOUSE Zinc finger protein 583 OS=Mus musculus GN=Znf583 PE=2 SV=1
Length = 568
Score = 30.4 bits (67), Expect = 5.6, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 26/134 (19%)
Query: 21 WEVLKERKDSNYSKVVIEAPDLSFERNLNLTSAAAVMIPIRTSSNNNYRDKGNDAVLKQL 80
W+ L + + Y KV +E N S ++ IP+ + + ++G D + Q
Sbjct: 20 WQWLSDTQRDLYRKVTLE----------NYKSLVSLGIPVYKPAVISLLEQGKDPWMVQK 69
Query: 81 QSAPMKIPDWSKIGK-----------KKSKKKALEDDSDDGDSYDCK--VPPHE---YIA 124
+ A PDW + K K+S K S S DC HE +
Sbjct: 70 KGARDTCPDWQYVFKGTEFISKQDIYKESAKVLTMGRSHFSSSLDCPDLKEDHENEDWFK 129
Query: 125 QRLAKSQVSSFSVF 138
RL + +V S +F
Sbjct: 130 NRLGRQEVHSHQLF 143
>sp|A5FJF9|IF2_FLAJ1 Translation initiation factor IF-2 OS=Flavobacterium johnsoniae
(strain ATCC 17061 / DSM 2064 / UW101) GN=infB PE=3 SV=1
Length = 956
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 13/109 (11%)
Query: 34 KVVIEAPDLSFERNLNLTSAAAVMIPIRTSSNNNYRDKGNDAVLKQL-QSAPMKIPDWSK 92
KV++EA L + N N + V+ Y DKG V L Q +KI D+
Sbjct: 613 KVLLEAEILDLKSNPNKAAQGTVV--------EAYLDKGKGYVSTILVQHGTLKIGDYML 664
Query: 93 IGKKKSKKKALEDDSDDGDSYDCKVP--PHEYIAQRLAKSQVSSFSVFE 139
GK K KA+ D+ G + P P + A + F+VFE
Sbjct: 665 AGKHHGKVKAMHDER--GHTVLTAGPSTPVSVLGLDGAATAGDKFNVFE 711
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,855,399
Number of Sequences: 539616
Number of extensions: 2298525
Number of successful extensions: 6392
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 6373
Number of HSP's gapped (non-prelim): 53
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)