Query 031154
Match_columns 165
No_of_seqs 131 out of 173
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 10:00:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04520 Senescence_reg: Senes 100.0 2.3E-49 5E-54 314.5 8.6 145 12-165 2-152 (152)
2 PF09350 DUF1992: Domain of un 32.3 42 0.0009 23.8 2.3 32 133-164 13-51 (71)
3 PRK10203 hypothetical protein; 28.3 66 0.0014 25.4 3.0 43 122-164 7-56 (122)
4 PF11898 DUF3418: Domain of un 23.5 35 0.00077 32.8 0.8 37 110-156 248-285 (586)
5 PF10984 DUF2794: Protein of u 15.9 72 0.0016 24.0 0.8 21 133-153 63-84 (85)
6 PF09924 DUF2156: Uncharacteri 12.8 85 0.0018 26.3 0.6 15 144-158 110-124 (299)
7 KOG2602 Predicted cell surface 10.5 77 0.0017 30.3 -0.4 29 119-147 217-250 (457)
8 PF13308 YARHG: YARHG domain 9.4 1.5E+02 0.0033 21.1 0.8 18 147-164 23-40 (81)
9 PHA02126 hypothetical protein 9.2 1.5E+02 0.0033 24.3 0.8 16 149-164 106-121 (153)
10 KOG4631 NADH:ubiquinone oxidor 9.0 3.5E+02 0.0076 21.0 2.7 29 82-129 6-34 (100)
No 1
>PF04520 Senescence_reg: Senescence regulator; InterPro: IPR007608 This family contains several uncharacterised proteins.
Probab=100.00 E-value=2.3e-49 Score=314.52 Aligned_cols=145 Identities=42% Similarity=0.661 Sum_probs=98.9
Q ss_pred CCCCCchhhhhhhcccccCCC-ccc--cccCCCccccc-cccccccccccccccCCCCCCCCCCCCcchhcccCCcCcCC
Q 031154 12 DGDFEEADVWEVLKERKDSNY-SKV--VIEAPDLSFER-NLNLTSAAAVMIPIRTSSNNNYRDKGNDAVLKQLQSAPMKI 87 (165)
Q Consensus 12 ~eeFdEeDVW~v~~~~~~~~~-~~~--~~~~~~~s~s~-~~~~~~sa~R~IPr~~~~~~~~~~~~~~~~~~~~~SaPVnI 87 (165)
.+||+|+|||.++........ +.. +....+.++.. .....++++|+||..+.... ........+ |||||||
T Consensus 2 ~~El~E~DVw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~R~~~~~~~~~~----~~~~~~~~~-~SaPV~I 76 (152)
T PF04520_consen 2 AEELDEEDVWWVDDDSDPDSNSSDSQNSSSGSSSSFSRSSSARPPSSPRMIPRSPSSGR----SSSRSRKAA-SSAPVNI 76 (152)
T ss_pred ccccCHhhccccCCCCCcccccccccccccCCcccccccccCCCCCCCcccCCCCCCcC----CCCCCCccC-CCCcccC
Confidence 589999999998876554320 000 11111111111 01122688999998762211 112223344 8999999
Q ss_pred CCcccccccccccc--cccCCCCCCCCCCCCCChHHHHHHHhhhccccccccccCCCCccCCcchhhhhhhhhhccCCCC
Q 031154 88 PDWSKIGKKKSKKK--ALEDDSDDGDSYDCKVPPHEYIAQRLAKSQVSSFSVFEGVGRTLKGRDLSKVRDAVLTKTGFLE 165 (165)
Q Consensus 88 Pdwski~~~~~~~~--~~~~~~dddd~~~~~vPPHe~~arr~a~~~~~sfSv~eG~GRTLKGRDL~~vRnAVl~~TGF~e 165 (165)
|+|+|||+...... ..++++++++++.+||||||||||| ++++||||||+|||||||||+|||||||+||||||
T Consensus 77 P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~vPPHe~~ar~----~~~s~Sv~eG~GRTLKGRDL~rVRNAVl~~TGFle 152 (152)
T PF04520_consen 77 PDWSKILGSRRRRREEDDDDDDDEDDDGGEMVPPHELVARR----RAASFSVCEGVGRTLKGRDLRRVRNAVLRQTGFLE 152 (152)
T ss_pred cCccccccccccccccccccccccccCCccccCcHHHHhhh----cccCcccccCCCccchhhHHHHHHHHHHhhhccCC
Confidence 99999998643321 2233344556677899999999994 56789999999999999999999999999999997
No 2
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=32.27 E-value=42 Score=23.77 Aligned_cols=32 Identities=25% Similarity=0.550 Sum_probs=24.7
Q ss_pred cccccccCCCCccCCcch-------hhhhhhhhhccCCC
Q 031154 133 SSFSVFEGVGRTLKGRDL-------SKVRDAVLTKTGFL 164 (165)
Q Consensus 133 ~sfSv~eG~GRTLKGRDL-------~~vRnAVl~~TGF~ 164 (165)
..|-=+.|.|++|.=-|. .++.|-||+..||+
T Consensus 13 GeFdnLpG~GKPL~~~~~~~~~~~~~~~~~~iLk~~g~l 51 (71)
T PF09350_consen 13 GEFDNLPGAGKPLPLDDDNPYWPAEERMANRILKNAGYL 51 (71)
T ss_pred CCccCCCCCCCCCCCCCCCcCCCHHHHHHHHhhcccCCC
Confidence 468888899999884444 56888888888886
No 3
>PRK10203 hypothetical protein; Provisional
Probab=28.25 E-value=66 Score=25.44 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=29.5
Q ss_pred HHHHHhhh-ccccccccccCCCCccCCcchh------hhhhhhhhccCCC
Q 031154 122 YIAQRLAK-SQVSSFSVFEGVGRTLKGRDLS------KVRDAVLTKTGFL 164 (165)
Q Consensus 122 ~~arr~a~-~~~~sfSv~eG~GRTLKGRDL~------~vRnAVl~~TGF~ 164 (165)
++.++... .....|.=+.|.|++|...|.+ ++-+-|++..||+
T Consensus 7 ~~E~~I~eA~~~GefdnLpG~GKPL~~~d~~~~p~e~r~~~rilknag~l 56 (122)
T PRK10203 7 WAERHILEAQRKGEFDNLPGSGEPLILDDDSHVPPELRAGYRLLKNAGCL 56 (122)
T ss_pred HHHHHHHHHHHcCCccCCCCCCCCCCCccCCCCCHHHHHHHHHHhhCCCC
Confidence 44455432 2335799999999999988876 3445577778876
No 4
>PF11898 DUF3418: Domain of unknown function (DUF3418); InterPro: IPR024590 This entry represents the uncharacterised C-terminal domain of HrpA.
Probab=23.50 E-value=35 Score=32.85 Aligned_cols=37 Identities=32% Similarity=0.609 Sum_probs=28.7
Q ss_pred CCCCCCCCChHHHHHHHhhhccccccccccCCCCccC-Ccchhhhhhh
Q 031154 110 GDSYDCKVPPHEYIAQRLAKSQVSSFSVFEGVGRTLK-GRDLSKVRDA 156 (165)
Q Consensus 110 dd~~~~~vPPHe~~arr~a~~~~~sfSv~eG~GRTLK-GRDL~~vRnA 156 (165)
++.+..-||||-- ..|.|...-|++|. ||||..++.-
T Consensus 248 ~d~~~~~Lp~HLr----------m~f~VvD~~Gk~la~gRdL~~L~~~ 285 (586)
T PF11898_consen 248 DDWDEERLPPHLR----------MNFRVVDDKGKELASGRDLAALQQR 285 (586)
T ss_pred HhCCcccCCHhHE----------eEEEEEcCCCCeecCCCCHHHHHHH
Confidence 4445567999942 35999999999998 9999887654
No 5
>PF10984 DUF2794: Protein of unknown function (DUF2794); InterPro: IPR021252 This is a bacterial family of proteins with unknown function.
Probab=15.92 E-value=72 Score=24.04 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=18.5
Q ss_pred cccccccCCCCccC-Ccchhhh
Q 031154 133 SSFSVFEGVGRTLK-GRDLSKV 153 (165)
Q Consensus 133 ~sfSv~eG~GRTLK-GRDL~~v 153 (165)
..|+|..--|.-|| |.||.+|
T Consensus 63 g~y~v~~~~G~iLkrG~~L~~v 84 (85)
T PF10984_consen 63 GAYAVIGEGGQILKRGHDLEQV 84 (85)
T ss_pred CceeeecCCCeEeeCCcchhhc
Confidence 57999988899999 9999876
No 6
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=12.81 E-value=85 Score=26.32 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=11.7
Q ss_pred ccCCcchhhhhhhhh
Q 031154 144 TLKGRDLSKVRDAVL 158 (165)
Q Consensus 144 TLKGRDL~~vRnAVl 158 (165)
||+|+-++++||+|=
T Consensus 110 ~l~Gkk~~~~Rn~in 124 (299)
T PF09924_consen 110 TLSGKKFRKKRNHIN 124 (299)
T ss_dssp H--SGGGHHHHHHHH
T ss_pred ccCCchhhhHHHHHH
Confidence 789999999999983
No 7
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=10.49 E-value=77 Score=30.31 Aligned_cols=29 Identities=41% Similarity=0.397 Sum_probs=22.3
Q ss_pred hHHHH----HHHhh-hccccccccccCCCCccCC
Q 031154 119 PHEYI----AQRLA-KSQVSSFSVFEGVGRTLKG 147 (165)
Q Consensus 119 PHe~~----arr~a-~~~~~sfSv~eG~GRTLKG 147 (165)
-||+. .|..- -++.|+|||..-+|++||+
T Consensus 217 ~H~l~~~~~WR~l~~~sq~as~svR~qaG~~L~s 250 (457)
T KOG2602|consen 217 FHELKYEIAWRNLGDLSQGASFSVRRQAGHSLKS 250 (457)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHhhHHHHH
Confidence 46654 55543 4688999999999999984
No 8
>PF13308 YARHG: YARHG domain
Probab=9.36 E-value=1.5e+02 Score=21.08 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=15.4
Q ss_pred CcchhhhhhhhhhccCCC
Q 031154 147 GRDLSKVRDAVLTKTGFL 164 (165)
Q Consensus 147 GRDL~~vRnAVl~~TGF~ 164 (165)
-.+|+=+||.|+-+-|+.
T Consensus 23 ~~~L~~~RNeiyAr~Gy~ 40 (81)
T PF13308_consen 23 CEELRIARNEIYARHGYC 40 (81)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 468889999999999974
No 9
>PHA02126 hypothetical protein
Probab=9.17 E-value=1.5e+02 Score=24.31 Aligned_cols=16 Identities=44% Similarity=0.671 Sum_probs=13.9
Q ss_pred chhhhhhhhhhccCCC
Q 031154 149 DLSKVRDAVLTKTGFL 164 (165)
Q Consensus 149 DL~~vRnAVl~~TGF~ 164 (165)
-|.-+|-|.+.||||.
T Consensus 106 ~~~~ir~alysktgfs 121 (153)
T PHA02126 106 PLTDIRIALYSKTGFS 121 (153)
T ss_pred chHHHHHHHHhccCCC
Confidence 4667999999999995
No 10
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=9.01 E-value=3.5e+02 Score=21.05 Aligned_cols=29 Identities=38% Similarity=0.615 Sum_probs=20.3
Q ss_pred CcCcCCCCcccccccccccccccCCCCCCCCCCCCCChHHHHHHHhhh
Q 031154 82 SAPMKIPDWSKIGKKKSKKKALEDDSDDGDSYDCKVPPHEYIAQRLAK 129 (165)
Q Consensus 82 SaPVnIPdwski~~~~~~~~~~~~~~dddd~~~~~vPPHe~~arr~a~ 129 (165)
--|+.||+.|.- . . .-+|+.+-+..++++
T Consensus 6 hep~~~P~ys~y-k--f----------------~~~pqL~~~~k~La~ 34 (100)
T KOG4631|consen 6 HEPMELPDYSQY-K--F----------------IEGPQLETIQKKLAA 34 (100)
T ss_pred CCcccCCCccee-e--e----------------ccCccHHHHHHHHHH
Confidence 369999998852 1 0 127888888888764
Done!