Query 031154
Match_columns 165
No_of_seqs 131 out of 173
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:51:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bzw_B BCL2-antagonist of cell 22.2 29 0.001 20.4 0.8 10 118-127 2-11 (27)
2 3tj3_C Nuclear pore complex pr 14.3 1.1E+02 0.0037 23.2 2.6 25 102-126 19-43 (114)
3 3g63_A Pfluding; subatomic res 11.9 64 0.0022 28.0 0.8 15 132-146 358-372 (381)
4 4gnt_B Carbohydrate-responsive 11.9 64 0.0022 18.7 0.5 13 148-160 1-13 (26)
5 2eqo_A TNF receptor-associated 8.6 1E+02 0.0035 24.0 0.8 17 149-165 41-57 (140)
6 3ici_C Calnexin, PP90; protein 8.5 2.5E+02 0.0085 17.4 2.4 11 82-92 5-15 (38)
7 1un0_C Nucleoporin NUP2; nucle 7.1 2.1E+02 0.007 18.7 1.6 12 115-126 28-39 (51)
8 2w2s_A Matrix protein; viral a 7.1 63 0.0022 26.3 -1.1 11 114-124 30-40 (202)
9 1wh9_A 40S ribosomal protein S 6.9 89 0.0031 22.0 -0.2 20 142-163 51-70 (92)
10 3uky_C Nuclear CAP-binding pro 6.9 1.3E+02 0.0043 18.2 0.5 18 8-25 5-22 (32)
No 1
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=22.18 E-value=29 Score=20.37 Aligned_cols=10 Identities=50% Similarity=0.889 Sum_probs=7.3
Q ss_pred ChHHHHHHHh
Q 031154 118 PPHEYIAQRL 127 (165)
Q Consensus 118 PPHe~~arr~ 127 (165)
||.-++|+|+
T Consensus 2 p~~~~~A~rY 11 (27)
T 2bzw_B 2 PPNLWAAQRY 11 (27)
T ss_dssp CGGGHHHHHH
T ss_pred chhHHHHHHH
Confidence 7777887764
No 2
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=14.26 E-value=1.1e+02 Score=23.22 Aligned_cols=25 Identities=8% Similarity=0.234 Sum_probs=13.5
Q ss_pred cccCCCCCCCCCCCCCChHHHHHHH
Q 031154 102 ALEDDSDDGDSYDCKVPPHEYIAQR 126 (165)
Q Consensus 102 ~~~~~~dddd~~~~~vPPHe~~arr 126 (165)
.|++++|+++...-.+-..|.|++|
T Consensus 19 Nwd~eed~ee~GtF~~AS~eVLs~R 43 (114)
T 3tj3_C 19 NWDQEDEAEEVGTFSMASEEVLKNR 43 (114)
T ss_dssp TSSSCCCCCCCCCCCBCCHHHHHHS
T ss_pred cccccccccccCCcccCCHHHHhcc
Confidence 3544333223333357788888776
No 3
>3g63_A Pfluding; subatomic resolution, phosphate binding, DING protein, hydrogen ATOM, phosphate binding protein; 0.88A {Pseudomonas fluorescens SBW25} SCOP: c.94.1.1 PDB: 3g62_A 4f1v_A 4f18_A 4f1u_A 4f19_A 2q9t_A 2v3q_A 2cap_A
Probab=11.88 E-value=64 Score=28.03 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=11.8
Q ss_pred ccccccccCCCCccC
Q 031154 132 VSSFSVFEGVGRTLK 146 (165)
Q Consensus 132 ~~sfSv~eG~GRTLK 146 (165)
+.--|||.|+||.|-
T Consensus 358 ~~~~~~~~~~~~~~~ 372 (381)
T 3g63_A 358 IGNTNVCNGIGRPLL 372 (381)
T ss_dssp TTCTTTTTTCSBCCC
T ss_pred CCChhhhcccCchhh
Confidence 344689999999874
No 4
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=11.86 E-value=64 Score=18.67 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=9.5
Q ss_pred cchhhhhhhhhhc
Q 031154 148 RDLSKVRDAVLTK 160 (165)
Q Consensus 148 RDL~~vRnAVl~~ 160 (165)
||--|+-|||||-
T Consensus 1 rdkirlnnaiwra 13 (26)
T 4gnt_B 1 RDKIRLNNAIWRA 13 (26)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHH
Confidence 4556788999983
No 5
>2eqo_A TNF receptor-associated factor 3-interacting protein 1; STN_TRAF3IP1_ND domain, interleukin 13 receptor alpha 1-binding protein-1 [HOMO sapiens]; NMR {Homo sapiens}
Probab=8.56 E-value=1e+02 Score=23.98 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=12.9
Q ss_pred chhhhhhhhhhccCCCC
Q 031154 149 DLSKVRDAVLTKTGFLE 165 (165)
Q Consensus 149 DL~~vRnAVl~~TGF~e 165 (165)
=|-.+-.+|.++|||.+
T Consensus 41 FLhDIv~~v~~~TGf~~ 57 (140)
T 2eqo_A 41 YLHDIITEVIRMTGFMK 57 (140)
T ss_dssp HHHHHHHHHHHHTCSST
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 34457789999999974
No 6
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}
Probab=8.55 E-value=2.5e+02 Score=17.38 Aligned_cols=11 Identities=36% Similarity=0.461 Sum_probs=7.3
Q ss_pred CcCcCCCCccc
Q 031154 82 SAPMKIPDWSK 92 (165)
Q Consensus 82 SaPVnIPdwsk 92 (165)
.-|--|||-..
T Consensus 5 dep~~IpDP~a 15 (38)
T 3ici_C 5 DEPKFIPDPNA 15 (38)
T ss_pred cccccccCCCC
Confidence 45777888553
No 7
>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C
Probab=7.14 E-value=2.1e+02 Score=18.74 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=7.5
Q ss_pred CCCChHHHHHHH
Q 031154 115 CKVPPHEYIAQR 126 (165)
Q Consensus 115 ~~vPPHe~~arr 126 (165)
..+-..+.|+.|
T Consensus 28 ~~~AS~eVl~~R 39 (51)
T 1un0_C 28 TKVASSAVMNRR 39 (51)
T ss_pred cccCCHHHHhcC
Confidence 355667777665
No 8
>2w2s_A Matrix protein; viral assembly, viral morphogenesis, polymer, viral protein, VSV; 2.75A {Lagos bat virus}
Probab=7.08 E-value=63 Score=26.29 Aligned_cols=11 Identities=45% Similarity=0.915 Sum_probs=6.6
Q ss_pred CCCCChHHHHH
Q 031154 114 DCKVPPHEYIA 124 (165)
Q Consensus 114 ~~~vPPHe~~a 124 (165)
+-|+||-||+-
T Consensus 30 dlwlpppeyvp 40 (202)
T 2w2s_A 30 DLWMPPPEYVP 40 (202)
T ss_dssp CCEECCCC---
T ss_pred cccCCCccccc
Confidence 46899999984
No 9
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=6.91 E-value=89 Score=21.97 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=17.8
Q ss_pred CCccCCcchhhhhhhhhhccCC
Q 031154 142 GRTLKGRDLSKVRDAVLTKTGF 163 (165)
Q Consensus 142 GRTLKGRDL~~vRnAVl~~TGF 163 (165)
|+ ||.++.++|..+=++|||
T Consensus 51 Gk--kG~~Ie~L~~~l~k~~~~ 70 (92)
T 1wh9_A 51 GE--KGRRIRELTAVVQKRFGF 70 (92)
T ss_dssp CG--GGHHHHHHHHHHHHHHCC
T ss_pred cC--CcHHHHHHHHHHHHHhCC
Confidence 76 899999999999888887
No 10
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=6.88 E-value=1.3e+02 Score=18.23 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=12.0
Q ss_pred cCCCCCCCCchhhhhhhc
Q 031154 8 GSLRDGDFEEADVWEVLK 25 (165)
Q Consensus 8 ~s~r~eeFdEeDVW~v~~ 25 (165)
+--|-.||||+|=.--|.
T Consensus 5 ~~KRr~dfd~ddgYrDfr 22 (32)
T 3uky_C 5 NRKRRGDFDEDENYRDFR 22 (32)
T ss_pred cccccccCcccccccccc
Confidence 334778999998654443
Done!