Query 031154
Match_columns 165
No_of_seqs 131 out of 173
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 15:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031154.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031154hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t94a2 e.8.1.7 (A:75-407) DNA 6.6 60 0.0044 25.3 0.6 14 150-163 220-233 (333)
2 d2hlja1 d.38.1.1 (A:1-156) Hyp 6.4 1.6E+02 0.012 19.1 2.7 14 133-146 140-153 (156)
3 d2cyua1 a.9.1.1 (A:2-40) E3-bi 6.3 1.1E+02 0.0081 17.1 1.5 25 124-150 5-29 (39)
4 d2ba0a1 b.40.4.5 (A:53-135) S1 6.1 52 0.0038 20.1 -0.1 11 144-154 73-83 (83)
5 d1im4a_ e.8.1.7 (A:) DinB homo 5.5 78 0.0056 22.8 0.5 13 151-163 131-143 (209)
6 d1xzpa2 c.37.1.8 (A:212-371) T 5.4 93 0.0067 19.6 0.9 16 146-161 145-160 (160)
7 d1jiha2 e.8.1.7 (A:1-389) DNA 5.3 79 0.0058 25.3 0.5 13 151-163 246-258 (389)
8 d2fuka1 c.69.1.36 (A:3-220) XC 5.2 3E+02 0.022 19.3 3.8 42 115-157 165-206 (218)
9 d1cc5a_ a.3.1.1 (A:) Cytochrom 4.9 1.1E+02 0.008 18.1 0.9 12 13-24 66-77 (83)
10 d2ex2a1 e.3.1.3 (A:22-477) DD- 4.8 64 0.0046 25.6 -0.4 49 115-164 342-400 (456)
No 1
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.65 E-value=60 Score=25.30 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=12.3
Q ss_pred hhhhhhhhhhccCC
Q 031154 150 LSKVRDAVLTKTGF 163 (165)
Q Consensus 150 L~~vRnAVl~~TGF 163 (165)
..++|++|+.+|||
T Consensus 220 a~~IR~~I~~etG~ 233 (333)
T d1t94a2 220 VKEIRFRIEQKTTL 233 (333)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCC
Confidence 35799999999998
No 2
>d2hlja1 d.38.1.1 (A:1-156) Hypothetical protein PP0301 {Pseudomonas putida [TaxId: 303]}
Probab=6.44 E-value=1.6e+02 Score=19.13 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=11.8
Q ss_pred cccccccCCCCccC
Q 031154 133 SSFSVFEGVGRTLK 146 (165)
Q Consensus 133 ~sfSv~eG~GRTLK 146 (165)
.++.+-+|+||+++
T Consensus 140 ~~~~~p~~~~~~i~ 153 (156)
T d2hlja1 140 EGAQAPQYMGRTIK 153 (156)
T ss_dssp TTSCCCSSCSCCCC
T ss_pred cCCCChHHcCCcCc
Confidence 56788899999886
No 3
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=6.29 E-value=1.1e+02 Score=17.13 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=15.6
Q ss_pred HHHhhhccccccccccCCCCccCCcch
Q 031154 124 AQRLAKSQVSSFSVFEGVGRTLKGRDL 150 (165)
Q Consensus 124 arr~a~~~~~sfSv~eG~GRTLKGRDL 150 (165)
+|++++...-..+-..|-|+ +||=+
T Consensus 5 arkla~e~gidl~~i~GtG~--~GRI~ 29 (39)
T d2cyua1 5 IRRLLAEHNLDASAIKGTGV--GGRLT 29 (39)
T ss_dssp HHHHHHHHTCCGGGSCCCSS--SSCCC
T ss_pred HHHHHHHcCCCHHHCcCCCC--CCcEe
Confidence 56666544456777788875 56643
No 4
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.06 E-value=52 Score=20.09 Aligned_cols=11 Identities=36% Similarity=0.456 Sum_probs=8.2
Q ss_pred ccCCcchhhhh
Q 031154 144 TLKGRDLSKVR 154 (165)
Q Consensus 144 TLKGRDL~~vR 154 (165)
|||+++|+++|
T Consensus 73 S~k~~~~~k~r 83 (83)
T d2ba0a1 73 TMKDRICRPIR 83 (83)
T ss_dssp ECCSSSCEEES
T ss_pred EecCCCCCCCC
Confidence 67788777765
No 5
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=5.46 E-value=78 Score=22.78 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=11.4
Q ss_pred hhhhhhhhhccCC
Q 031154 151 SKVRDAVLTKTGF 163 (165)
Q Consensus 151 ~~vRnAVl~~TGF 163 (165)
+++|+.|+++||+
T Consensus 131 ~~ir~~I~~~~gl 143 (209)
T d1im4a_ 131 RKIKQEILEKEKI 143 (209)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCC
Confidence 4699999999997
No 6
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.45 E-value=93 Score=19.63 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=12.7
Q ss_pred CCcchhhhhhhhhhcc
Q 031154 146 KGRDLSKVRDAVLTKT 161 (165)
Q Consensus 146 KGRDL~~vRnAVl~~T 161 (165)
.|.-+..++++|+++|
T Consensus 145 ~g~gi~~L~~~I~ket 160 (160)
T d1xzpa2 145 KGEGLEKLEESIYRET 160 (160)
T ss_dssp GTCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhcC
Confidence 3445788999999987
No 7
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.26 E-value=79 Score=25.30 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=12.2
Q ss_pred hhhhhhhhhccCC
Q 031154 151 SKVRDAVLTKTGF 163 (165)
Q Consensus 151 ~~vRnAVl~~TGF 163 (165)
.++|+.|+++|||
T Consensus 246 ~~IR~~I~~etGl 258 (389)
T d1jiha2 246 KGIRDSIKDILGY 258 (389)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCC
Confidence 7899999999998
No 8
>d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]}
Probab=5.21 E-value=3e+02 Score=19.26 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=24.8
Q ss_pred CCCChHHHHHHHhhhccccccccccCCCCccCCcchhhhhhhh
Q 031154 115 CKVPPHEYIAQRLAKSQVSSFSVFEGVGRTLKGRDLSKVRDAV 157 (165)
Q Consensus 115 ~~vPPHe~~arr~a~~~~~sfSv~eG~GRTLKGRDL~~vRnAV 157 (165)
.+||+..+..--.+-.....+-+.+|.|....|+. ..++.+|
T Consensus 165 ~~vp~~~~~~l~~~~~~~~~l~~i~ga~H~f~~~~-~~l~~~~ 206 (218)
T d2fuka1 165 EIVDPQAVYDWLETLEQQPTLVRMPDTSHFFHRKL-IDLRGAL 206 (218)
T ss_dssp SSSCHHHHHHHHTTCSSCCEEEEETTCCTTCTTCH-HHHHHHH
T ss_pred cCcCHHHHHHHHHHccCCceEEEeCCCCCCCCCCH-HHHHHHH
Confidence 58999776542211122245778999999887742 3344443
No 9
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}
Probab=4.92 E-value=1.1e+02 Score=18.13 Aligned_cols=12 Identities=8% Similarity=0.305 Sum_probs=10.1
Q ss_pred CCCCchhhhhhh
Q 031154 13 GDFEEADVWEVL 24 (165)
Q Consensus 13 eeFdEeDVW~v~ 24 (165)
..+.++|||+|+
T Consensus 66 ~~Lsd~ei~~vv 77 (83)
T d1cc5a_ 66 ADCSDDELKAAI 77 (83)
T ss_dssp SSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 468899999986
No 10
>d2ex2a1 e.3.1.3 (A:22-477) DD-carboxypeptidase DacB {Escherichia coli [TaxId: 562]}
Probab=4.80 E-value=64 Score=25.60 Aligned_cols=49 Identities=27% Similarity=0.321 Sum_probs=29.6
Q ss_pred CCCChHHHHH--HHhhhc-----cccccccccCCCCccCCcch---hhhhhhhhhccCCC
Q 031154 115 CKVPPHEYIA--QRLAKS-----QVSSFSVFEGVGRTLKGRDL---SKVRDAVLTKTGFL 164 (165)
Q Consensus 115 ~~vPPHe~~a--rr~a~~-----~~~sfSv~eG~GRTLKGRDL---~~vRnAVl~~TGF~ 164 (165)
..|.|.-++. ....+. -..++.+ -|+--|||.|-. ...+.-|+-|||.|
T Consensus 342 n~isp~~l~~lL~~~~~~~~~~~~~~sLPi-aG~~GTL~~R~~~~~~~~~g~v~aKTGTL 400 (456)
T d2ex2a1 342 NLIAPATMMQVLQYIAQHDNELNFISMLPL-AGYDGSLQYRAGLHQAGVDGKVSAKTGSL 400 (456)
T ss_dssp CBBCHHHHHHHHHHHHHTHHHHCCGGGSCB-TTTSGGGTTCHHHHHTTCTTTEEEEEEEE
T ss_pred cccCHHHHHHHHHHHHhCcchHHHHHhCCc-cCCCCccccccccCCcCcCCeEEEEEeee
Confidence 4799986652 111111 1234444 466679999843 34566699999976
Done!