BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031156
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3
PE=1 SV=1
Length = 229
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 10/147 (6%)
Query: 16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS 75
L +T +N F + ++P MS+ +K KL GT+V+SM ++L+D + LTD +
Sbjct: 7 LEIT-TNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA 65
Query: 76 RPLGFYSPLQGYRLHVIDLDPSSVTSGGW-LEDTSLVEKYTISEEEYSKRDGTFRKFKEK 134
+ L GYR+H +D VT G +D S+VEKY +S++ Y KR + R +K+K
Sbjct: 66 KSLKDLGVRDGYRIHAVD-----VTGGNEDFKDESMVEKYEMSDDTYGKRTDSVRAWKKK 120
Query: 135 VLSQNPSA--VENKLSNNYMEDLCSNI 159
+ + SA +EN+ S+ E+ NI
Sbjct: 121 MQEEQGSAAPMENE-SDKLNEEAAKNI 146
>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb
PE=3 SV=1
Length = 270
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 13 SVLLRVTHSNLKSFSADVR----FPLQMSVESVKDKLWRKCGTSVNSMSLELYDD--TNT 66
+V L +THS L S F L + ++ K+KL+R GT M L L D+ N
Sbjct: 31 NVRLEITHSVLTGESLGTNNFKNFSLDLKIKDFKEKLYRFVGTEPKYMELILRDENKVND 90
Query: 67 KVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDG 126
D+ + LG Y P G +H+ID DP++ S L+D S K ISEE+Y+KR+G
Sbjct: 91 ICKIDDDDDKTLGSYEPKDGMNVHIIDKDPNNFVS--ELQDISKAPKPVISEEDYNKREG 148
Query: 127 TFRKFKEK 134
T++K+KE+
Sbjct: 149 TYKKWKEE 156
>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2
Length = 244
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
S+L +F ++ R+ +++ K KL G+ + M LELY + + L LG
Sbjct: 17 SSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGS 76
Query: 81 YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF 131
Y G R+HVID + + G ED S VEKYTIS+E Y +R T R F
Sbjct: 77 YPVDDGCRIHVIDHSGARL---GEYEDVSRVEKYTISQEAYDQRQDTVRSF 124
>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1
Length = 244
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
S+L SF + R+ ++V K KL G+ + M LELY + L + LG
Sbjct: 17 SSLNSFRSQKRYSRSLTVAEFKCKLQLVVGSPASCMELELYGPDDKFCCKLDQDDALLGS 76
Query: 81 YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKF 131
Y G R+HVID + + G ED S VEKY IS+E Y +R + R F
Sbjct: 77 YPVDDGCRIHVIDHSGARL---GEYEDISKVEKYEISQEAYEQRQDSIRSF 124
>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2
Length = 244
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80
S+L SF ++ R+ +++ K KL G+ + M LELY + + L LG
Sbjct: 17 SSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGS 76
Query: 81 YSPLQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEK 134
Y G R+HVID S G ED S VEKY IS E Y +R T R F ++
Sbjct: 77 YPVDDGCRIHVID---HSGVRLGEYEDVSKVEKYEISPEAYERRQNTVRSFMKR 127
>sp|A1KCL7|DNAE2_AZOSB Error-prone DNA polymerase OS=Azoarcus sp. (strain BH72) GN=dnaE2
PE=3 SV=1
Length = 1064
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW---LED 107
NS+P+GFY+P LQ R H +++ P VT+ W LED
Sbjct: 781 NSQPMGFYAPAQLLQDARRHGVEVRPVDVTASAWDATLED 820
>sp|A4XTN0|DNAE2_PSEMY Error-prone DNA polymerase OS=Pseudomonas mendocina (strain ymp)
GN=dnaE2 PE=3 SV=1
Length = 1026
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSL 110
NS P+GFYSP LQ R H I++ P+ V W D SL
Sbjct: 748 NSWPMGFYSPDQVLQDARRHGIEVRPADVRHSAW--DCSL 785
>sp|Q9I5Q2|DNAE2_PSEAE Error-prone DNA polymerase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dnaE2 PE=3
SV=1
Length = 1031
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSL 110
NS P+GFYSP LQ R H + P V GW D SL
Sbjct: 752 NSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGW--DCSL 789
>sp|A6VAU7|DNAE2_PSEA7 Error-prone DNA polymerase OS=Pseudomonas aeruginosa (strain PA7)
GN=dnaE2 PE=3 SV=1
Length = 1024
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDG--TF 128
NS P+GFYSP LQ R H I P V W D SL I +E+ + R G
Sbjct: 745 NSWPMGFYSPDQLLQDARRHAIQTRPVDVRHSRW--DCSL---EPIGQEQPAIRLGLRMI 799
Query: 129 RKFKEK 134
R F+E+
Sbjct: 800 RGFREE 805
>sp|Q47EP3|DNAE2_DECAR Error-prone DNA polymerase OS=Dechloromonas aromatica (strain RCB)
GN=dnaE2 PE=3 SV=1
Length = 1027
Score = 33.1 bits (74), Expect = 0.78, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSLVEK 113
NS+P+GFYSP +Q R H + + P V + W D+ L E+
Sbjct: 752 NSQPMGFYSPSMLIQDARRHGVRVLPPDVMTSDW--DSRLDER 792
>sp|Q7W9W1|DNAE2_BORPA Error-prone DNA polymerase OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=dnaE2 PE=3 SV=1
Length = 1052
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 68 VAALTDNSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW 104
+AAL NS+P+GFY+P +Q R H + + P+ V GW
Sbjct: 762 LAALL-NSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGW 800
>sp|Q7WHW8|DNAE2_BORBR Error-prone DNA polymerase OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=dnaE2 PE=3 SV=1
Length = 1052
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 68 VAALTDNSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW 104
+AAL NS+P+GFY+P +Q R H + + P+ V GW
Sbjct: 762 LAALL-NSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGW 800
>sp|Q4ZTG0|DNAE2_PSEU2 Error-prone DNA polymerase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=dnaE2 PE=3 SV=1
Length = 1031
Score = 33.1 bits (74), Expect = 0.91, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSL 110
NS P+GFYSP LQ R H I++ P V W D SL
Sbjct: 749 NSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDW--DCSL 786
>sp|Q48IB1|DNAE2_PSE14 Error-prone DNA polymerase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=dnaE2 PE=3 SV=1
Length = 1031
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSL 110
NS P+GFYSP LQ R H I++ P V W D SL
Sbjct: 749 NSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDW--DCSL 786
>sp|Q8C7H1|MMAA_MOUSE Methylmalonic aciduria type A homolog, mitochondrial OS=Mus
musculus GN=Mmaa PE=2 SV=1
Length = 415
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 85 QGYRLHVIDLDPSSVTSGGWL--EDTSLVE 112
QG+RL V+ +DPSS TSGG L + T ++E
Sbjct: 167 QGHRLSVLAVDPSSCTSGGSLLGDKTRMIE 196
>sp|Q3KBG7|DNAE2_PSEPF Error-prone DNA polymerase OS=Pseudomonas fluorescens (strain
Pf0-1) GN=dnaE2 PE=3 SV=1
Length = 1025
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGWLEDTSL 110
NS P+GFYSP LQ R H + + P V + W D SL
Sbjct: 746 NSWPMGFYSPDQILQDARRHHLQIRPVDVRASDW--DCSL 783
>sp|Q881T7|DNAE2_PSESM Error-prone DNA polymerase OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dnaE2 PE=3 SV=1
Length = 1031
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW 104
NS P+GFYSP LQ R H I++ P V W
Sbjct: 749 NSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHW 782
>sp|Q605W1|DNAE2_METCA Error-prone DNA polymerase OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=dnaE2 PE=3 SV=1
Length = 1047
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 74 NSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW---LEDTSLVEKYTISE 118
NS+P+GFY P +Q R H +++ P V W LE T + ++ E
Sbjct: 751 NSQPMGFYGPSQLIQDARRHGVEVRPIDVNHSDWDCTLEPTEIPNPLSLWE 801
>sp|C3M9Z5|DNAE2_RHISN Error-prone DNA polymerase OS=Rhizobium sp. (strain NGR234)
GN=dnaE2 PE=3 SV=1
Length = 1117
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 74 NSRPLGFYSPLQ---GYRLHVIDLDPSSVTSGGW---LEDTSLVEKYTISEEEYSKRD 125
NS+P+GFY+P Q R H + + P V W LE ++ K I RD
Sbjct: 759 NSQPMGFYAPAQLVRDAREHGVRILPVDVNHSDWDALLEGEAMFRKEAIDPRHGEMRD 816
>sp|Q63XR8|DNAE2_BURPS Error-prone DNA polymerase OS=Burkholderia pseudomallei (strain
K96243) GN=dnaE2 PE=3 SV=1
Length = 1072
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 68 VAALTDNSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW 104
+AAL NS+P+GFY P +Q + H + + P T GW
Sbjct: 783 LAALL-NSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGW 821
>sp|Q62F99|DNAE2_BURMA Error-prone DNA polymerase OS=Burkholderia mallei (strain ATCC
23344) GN=dnaE2 PE=3 SV=1
Length = 1063
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 68 VAALTDNSRPLGFYSP---LQGYRLHVIDLDPSSVTSGGW 104
+AAL NS+P+GFY P +Q + H + + P T GW
Sbjct: 783 LAALL-NSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGW 821
>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana
GN=SPL14 PE=2 SV=3
Length = 1035
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 32 FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91
FPLQ S E+++ K + + LEL+ +N A N + G S GY
Sbjct: 435 FPLQASPETMRSKNHKNSSPRTGCLPLELFGASNR--GAADPNFKGFGQQS---GYASSG 489
Query: 92 IDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPSAVE 144
D P S+ S +V + + +++ S+ GT R LS PS +E
Sbjct: 490 SDYSPPSLNSDAQDRTGKIV--FKLLDKDPSQLPGTLRSEIYNWLSNIPSEME 540
>sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1
Length = 5376
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 40 SVKDKLWRKCGTSVNS--------MSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91
S +D + KC NS MS + D T +LT S P G Y +GY LH
Sbjct: 38 SREDSILSKCDFEDNSRPFCDWSQMSADDGDWIRTTGPSLTGTSGPPGGYPNGEGYYLH- 96
Query: 92 IDLDPSSVTSGG 103
+DP + GG
Sbjct: 97 --MDPKTFPQGG 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,149,715
Number of Sequences: 539616
Number of extensions: 2160197
Number of successful extensions: 4388
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 4374
Number of HSP's gapped (non-prelim): 34
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)