Query 031156
Match_columns 165
No_of_seqs 170 out of 536
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 10:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3206 Alpha-tubulin folding 100.0 5E-36 1.1E-40 237.7 12.6 148 13-164 1-154 (234)
2 PF14560 Ubiquitin_2: Ubiquiti 99.9 2.1E-25 4.6E-30 156.5 10.7 86 13-98 1-87 (87)
3 cd01789 Alp11_N Ubiquitin-like 99.9 3.3E-24 7.2E-29 150.0 10.8 84 13-97 1-84 (84)
4 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 8.8E-14 1.9E-18 94.9 8.1 70 14-92 2-71 (73)
5 cd01809 Scythe_N Ubiquitin-lik 99.5 1.1E-13 2.5E-18 92.4 7.9 71 14-93 1-71 (72)
6 cd01812 BAG1_N Ubiquitin-like 99.5 1.2E-13 2.5E-18 92.3 7.3 69 14-92 1-69 (71)
7 PTZ00044 ubiquitin; Provisiona 99.5 2E-13 4.3E-18 92.7 7.7 71 15-94 2-72 (76)
8 cd01799 Hoil1_N Ubiquitin-like 99.5 1.9E-13 4.1E-18 93.7 7.3 71 15-92 2-73 (75)
9 cd01806 Nedd8 Nebb8-like ubiq 99.5 2.9E-13 6.3E-18 91.3 7.9 72 15-95 2-73 (76)
10 cd01800 SF3a120_C Ubiquitin-li 99.5 1.4E-13 3E-18 94.1 6.1 66 23-95 5-70 (76)
11 cd01807 GDX_N ubiquitin-like d 99.4 4.4E-13 9.6E-18 91.0 7.6 71 15-94 2-72 (74)
12 cd01793 Fubi Fubi ubiquitin-li 99.4 6E-13 1.3E-17 90.4 7.3 68 15-93 2-69 (74)
13 cd01803 Ubiquitin Ubiquitin. U 99.4 1.2E-12 2.6E-17 88.3 7.4 71 15-94 2-72 (76)
14 cd01813 UBP_N UBP ubiquitin pr 99.4 1.3E-12 2.8E-17 89.2 7.5 73 14-93 1-73 (74)
15 cd01798 parkin_N amino-termina 99.4 1.7E-12 3.6E-17 87.1 7.1 64 23-93 6-69 (70)
16 cd01794 DC_UbP_C dendritic cel 99.4 1.3E-12 2.8E-17 88.3 6.6 64 23-93 6-69 (70)
17 cd01796 DDI1_N DNA damage indu 99.4 1.6E-12 3.5E-17 87.8 6.9 63 24-92 8-70 (71)
18 cd01790 Herp_N Homocysteine-re 99.4 1.2E-12 2.6E-17 90.6 6.2 73 14-93 2-78 (79)
19 cd01804 midnolin_N Ubiquitin-l 99.4 3.5E-12 7.5E-17 87.8 8.0 71 14-94 2-72 (78)
20 cd01797 NIRF_N amino-terminal 99.4 2.7E-12 5.9E-17 88.5 7.2 71 15-94 2-74 (78)
21 cd01808 hPLIC_N Ubiquitin-like 99.4 2.8E-12 6E-17 86.4 7.0 70 14-93 1-70 (71)
22 PF00240 ubiquitin: Ubiquitin 99.3 3.6E-12 7.9E-17 84.7 7.1 65 23-94 3-67 (69)
23 cd01802 AN1_N ubiquitin-like d 99.3 4.6E-12 1E-16 91.8 8.2 74 12-94 26-99 (103)
24 cd01792 ISG15_repeat1 ISG15 ub 99.3 4.7E-12 1E-16 87.3 7.6 75 14-95 3-77 (80)
25 cd01805 RAD23_N Ubiquitin-like 99.3 6.8E-12 1.5E-16 85.2 8.2 73 15-96 2-76 (77)
26 cd01810 ISG15_repeat2 ISG15 ub 99.3 3.6E-12 7.7E-17 86.5 6.8 69 17-94 2-70 (74)
27 KOG0005 Ubiquitin-like protein 99.2 1.4E-11 3E-16 80.6 3.3 68 18-92 3-70 (70)
28 cd01795 USP48_C USP ubiquitin- 99.2 4E-11 8.7E-16 86.0 5.2 83 28-121 17-99 (107)
29 smart00213 UBQ Ubiquitin homol 99.1 1.3E-10 2.8E-15 75.2 6.0 64 14-87 1-64 (64)
30 cd01769 UBL Ubiquitin-like dom 99.1 4.1E-10 8.9E-15 73.8 7.4 64 24-94 6-69 (69)
31 cd01815 BMSC_UbP_N Ubiquitin-l 99.1 1.2E-10 2.5E-15 79.9 4.7 54 33-93 18-74 (75)
32 cd01763 Sumo Small ubiquitin-r 99.0 2.5E-09 5.3E-14 75.0 9.1 75 10-93 8-82 (87)
33 TIGR00601 rad23 UV excision re 98.9 2.8E-09 6.2E-14 92.9 7.8 74 14-96 1-77 (378)
34 PLN02560 enoyl-CoA reductase 98.9 7E-09 1.5E-13 88.3 9.0 81 15-97 2-86 (308)
35 KOG0010 Ubiquitin-like protein 98.9 3.3E-09 7.2E-14 94.1 6.9 76 12-97 14-89 (493)
36 KOG0004 Ubiquitin/40S ribosoma 98.9 1.5E-09 3.4E-14 83.3 3.5 70 16-94 3-72 (156)
37 KOG0003 Ubiquitin/60s ribosoma 98.9 5.8E-10 1.2E-14 81.0 0.8 65 23-94 8-72 (128)
38 cd01814 NTGP5 Ubiquitin-like N 98.7 3.1E-08 6.7E-13 72.6 5.8 80 12-99 3-95 (113)
39 PF11976 Rad60-SLD: Ubiquitin- 98.6 1.8E-07 3.9E-12 62.5 6.9 70 14-92 1-71 (72)
40 cd01801 Tsc13_N Ubiquitin-like 98.4 6.7E-07 1.5E-11 61.1 6.3 57 33-94 20-77 (77)
41 KOG0011 Nucleotide excision re 98.4 6.8E-07 1.5E-11 76.2 6.7 74 15-97 2-77 (340)
42 cd01811 OASL_repeat1 2'-5' oli 98.2 9E-06 2E-10 55.6 7.8 68 27-97 12-79 (80)
43 PF11543 UN_NPL4: Nuclear pore 98.1 4.9E-06 1.1E-10 57.7 5.1 74 13-92 4-78 (80)
44 cd01788 ElonginB Ubiquitin-lik 98.1 2E-05 4.3E-10 58.0 7.4 60 28-94 14-80 (119)
45 cd00196 UBQ Ubiquitin-like pro 98.0 2.6E-05 5.5E-10 47.6 6.5 61 26-93 8-68 (69)
46 KOG0001 Ubiquitin and ubiquiti 98.0 4.3E-05 9.3E-10 49.2 7.0 65 23-94 7-71 (75)
47 KOG4248 Ubiquitin-like protein 97.9 1.5E-05 3.3E-10 76.2 6.2 71 16-96 5-75 (1143)
48 PF13881 Rad60-SLD_2: Ubiquiti 97.6 0.00039 8.5E-09 51.0 7.9 73 14-95 3-89 (111)
49 KOG2982 Uncharacterized conser 97.6 0.00011 2.4E-09 63.0 5.2 82 9-93 334-416 (418)
50 KOG1872 Ubiquitin-specific pro 97.2 0.0012 2.7E-08 58.8 7.1 72 14-95 4-76 (473)
51 PF08817 YukD: WXG100 protein 97.2 0.00086 1.9E-08 45.9 4.8 73 13-91 2-78 (79)
52 KOG4495 RNA polymerase II tran 97.2 0.00032 6.9E-09 50.3 2.6 59 28-91 14-79 (110)
53 KOG3493 Ubiquitin-like protein 97.1 0.00023 5E-09 47.4 1.7 64 21-91 7-70 (73)
54 cd06406 PB1_P67 A PB1 domain i 96.8 0.0054 1.2E-07 42.6 6.0 47 13-65 4-50 (80)
55 PF00789 UBX: UBX domain; Int 96.7 0.058 1.3E-06 36.6 10.8 77 10-92 3-81 (82)
56 PF14836 Ubiquitin_3: Ubiquiti 96.5 0.04 8.6E-07 38.9 8.8 67 27-95 15-81 (88)
57 smart00666 PB1 PB1 domain. Pho 95.6 0.084 1.8E-06 35.6 7.1 53 14-69 2-54 (81)
58 PF13019 Telomere_Sde2: Telome 95.6 0.079 1.7E-06 41.4 7.6 66 14-84 1-70 (162)
59 KOG1639 Steroid reductase requ 95.4 0.049 1.1E-06 45.5 6.3 67 27-97 14-82 (297)
60 cd01774 Faf1_like2_UBX Faf1 ik 95.4 0.15 3.1E-06 35.6 7.8 79 12-94 3-85 (85)
61 cd06407 PB1_NLP A PB1 domain i 95.0 0.18 3.9E-06 35.0 7.2 42 27-68 11-53 (82)
62 COG5417 Uncharacterized small 94.6 0.069 1.5E-06 36.7 4.2 69 14-91 7-80 (81)
63 PF00564 PB1: PB1 domain; Int 94.6 0.17 3.6E-06 34.1 6.2 54 14-69 2-55 (84)
64 smart00166 UBX Domain present 94.5 0.56 1.2E-05 31.8 8.6 75 12-92 3-79 (80)
65 cd01771 Faf1_UBX Faf1 UBX doma 93.4 1.3 2.9E-05 30.3 9.0 78 11-93 2-79 (80)
66 cd06398 PB1_Joka2 The PB1 doma 93.3 0.21 4.6E-06 35.3 4.9 47 27-74 11-63 (91)
67 KOG0006 E3 ubiquitin-protein l 93.3 0.28 6.2E-06 42.4 6.4 63 27-96 15-77 (446)
68 cd01772 SAKS1_UBX SAKS1-like U 93.1 1.1 2.4E-05 30.4 8.2 75 12-92 3-78 (79)
69 cd01770 p47_UBX p47-like ubiqu 92.8 0.92 2E-05 31.0 7.4 71 12-88 3-74 (79)
70 cd01767 UBX UBX (ubiquitin reg 92.8 1.4 3.1E-05 29.4 8.3 73 13-92 2-75 (77)
71 cd05992 PB1 The PB1 domain is 92.7 0.68 1.5E-05 30.8 6.6 43 27-69 11-54 (81)
72 cd06396 PB1_NBR1 The PB1 domai 91.9 1.1 2.4E-05 31.1 6.9 50 14-68 1-52 (81)
73 KOG1769 Ubiquitin-like protein 91.7 2.6 5.7E-05 30.3 8.8 75 11-94 18-92 (99)
74 cd06397 PB1_UP1 Uncharacterize 91.4 1 2.3E-05 31.3 6.2 43 27-69 11-53 (82)
75 cd06411 PB1_p51 The PB1 domain 90.4 1.1 2.3E-05 31.0 5.5 40 26-65 7-46 (78)
76 cd06408 PB1_NoxR The PB1 domai 90.3 1.6 3.5E-05 30.7 6.5 40 27-68 13-52 (86)
77 cd01773 Faf1_like1_UBX Faf1 ik 89.9 5 0.00011 27.9 9.0 78 12-94 4-81 (82)
78 PF10302 DUF2407: DUF2407 ubiq 89.6 1.1 2.4E-05 32.0 5.4 58 14-79 3-62 (97)
79 KOG4583 Membrane-associated ER 88.8 0.21 4.7E-06 43.3 1.4 80 8-94 4-87 (391)
80 PF08337 Plexin_cytopl: Plexin 88.6 2.9 6.4E-05 38.5 8.6 85 10-95 186-290 (539)
81 cd06409 PB1_MUG70 The MUG70 pr 87.5 2.8 6.2E-05 29.4 6.2 46 23-68 8-56 (86)
82 KOG0013 Uncharacterized conser 85.6 1.5 3.2E-05 35.8 4.4 60 30-96 161-222 (231)
83 PF14732 UAE_UbL: Ubiquitin/SU 82.6 1.3 2.7E-05 31.0 2.5 60 34-95 7-70 (87)
84 cd06404 PB1_aPKC PB1 domain is 79.8 7.7 0.00017 27.1 5.6 66 26-92 10-81 (83)
85 TIGR02958 sec_mycoba_snm4 secr 78.2 26 0.00056 31.6 10.0 74 13-93 2-79 (452)
86 cd06410 PB1_UP2 Uncharacterize 77.8 12 0.00026 26.6 6.4 37 26-63 23-59 (97)
87 PF00788 RA: Ras association ( 76.2 13 0.00027 24.9 6.0 44 13-56 4-47 (93)
88 cd00754 MoaD Ubiquitin domain 75.7 15 0.00033 24.1 6.1 54 28-93 18-75 (80)
89 PF14533 USP7_C2: Ubiquitin-sp 75.6 13 0.00029 29.8 6.8 78 13-93 20-100 (213)
90 PRK06437 hypothetical protein; 73.6 19 0.00041 23.6 6.1 51 27-93 12-62 (67)
91 PF10209 DUF2340: Uncharacteri 68.5 14 0.00031 27.6 5.0 60 32-92 22-106 (122)
92 PF14451 Ub-Mut7C: Mut7-C ubiq 68.0 23 0.0005 24.3 5.7 53 27-94 24-76 (81)
93 PF11470 TUG-UBL1: GLUT4 regul 67.6 13 0.00028 24.6 4.2 59 25-90 6-64 (65)
94 PF08825 E2_bind: E2 binding d 65.7 5.5 0.00012 27.7 2.2 63 30-95 1-72 (84)
95 KOG4250 TANK binding protein k 64.7 12 0.00027 35.6 4.9 37 25-61 324-360 (732)
96 COG3462 Predicted membrane pro 63.0 2.4 5.3E-05 31.1 0.0 17 113-129 100-116 (117)
97 PF11834 DUF3354: Domain of un 62.5 31 0.00068 23.1 5.3 51 14-68 4-54 (69)
98 cd01775 CYR1_RA Ubiquitin doma 62.4 55 0.0012 23.5 7.5 35 27-61 14-49 (97)
99 PF12436 USP7_ICP0_bdg: ICP0-b 59.6 38 0.00082 27.9 6.5 49 13-61 176-225 (249)
100 PRK08364 sulfur carrier protei 53.7 60 0.0013 21.2 7.9 51 27-93 15-65 (70)
101 smart00295 B41 Band 4.1 homolo 52.1 1E+02 0.0022 23.4 9.6 39 13-53 3-41 (207)
102 cd00565 ThiS ThiaminS ubiquiti 51.5 61 0.0013 20.6 5.8 54 28-93 7-60 (65)
103 cd06402 PB1_p62 The PB1 domain 50.7 64 0.0014 22.6 5.6 36 34-69 25-61 (87)
104 PF14533 USP7_C2: Ubiquitin-sp 50.2 19 0.00042 28.9 3.3 51 12-62 116-172 (213)
105 PF09851 SHOCT: Short C-termin 49.8 7.9 0.00017 21.7 0.7 15 115-129 16-30 (31)
106 PF10016 DUF2259: Predicted se 46.2 14 0.0003 29.6 1.9 27 79-105 3-34 (198)
107 TIGR01683 thiS thiamine biosyn 43.9 83 0.0018 20.0 5.7 54 28-93 6-59 (64)
108 PF12436 USP7_ICP0_bdg: ICP0-b 43.4 25 0.00054 28.9 3.0 85 10-96 65-154 (249)
109 cd01760 RBD Ubiquitin-like dom 42.8 77 0.0017 21.2 4.8 35 27-61 11-45 (72)
110 PRK07440 hypothetical protein; 42.6 97 0.0021 20.3 7.0 54 28-93 12-65 (70)
111 KOG4031 Vesicle coat protein c 41.4 14 0.00031 30.0 1.2 33 123-155 103-137 (216)
112 PF10790 DUF2604: Protein of U 40.9 36 0.00079 22.8 2.9 62 27-94 7-71 (76)
113 PF00276 Ribosomal_L23: Riboso 40.4 65 0.0014 22.4 4.3 35 27-61 22-56 (91)
114 TIGR01682 moaD molybdopterin c 40.1 88 0.0019 20.6 4.9 54 28-93 18-75 (80)
115 cd01787 GRB7_RA RA (RAS-associ 39.2 1.3E+02 0.0027 21.1 5.5 31 27-57 14-44 (85)
116 smart00455 RBD Raf-like Ras-bi 38.9 1.1E+02 0.0025 20.1 5.3 36 26-61 10-45 (70)
117 cd01776 Rin1_RA Ubiquitin doma 38.2 1.4E+02 0.003 20.9 7.1 36 27-62 15-51 (87)
118 cd01817 RGS12_RBD Ubiquitin do 37.6 1.3E+02 0.0028 20.4 5.8 50 27-78 11-60 (73)
119 PF15044 CLU_N: Mitochondrial 37.3 69 0.0015 21.5 3.9 55 32-93 1-57 (76)
120 smart00314 RA Ras association 36.5 1.3E+02 0.0028 20.1 7.2 42 12-54 3-44 (90)
121 PRK05659 sulfur carrier protei 35.6 1.2E+02 0.0025 19.2 5.7 53 29-93 9-61 (66)
122 COG5100 NPL4 Nuclear pore prot 35.6 2.1E+02 0.0047 26.0 7.6 69 27-96 11-81 (571)
123 PLN02799 Molybdopterin synthas 35.3 1E+02 0.0022 20.4 4.6 56 27-93 20-77 (82)
124 PF09379 FERM_N: FERM N-termin 35.2 1.3E+02 0.0027 19.5 7.6 65 25-91 6-74 (80)
125 PF10500 SR-25: Nuclear RNA-sp 35.1 15 0.00032 30.2 0.4 22 114-141 158-179 (225)
126 cd01778 RASSF1_RA Ubiquitin-li 34.8 1.2E+02 0.0025 21.8 4.9 52 27-78 18-73 (96)
127 PF10407 Cytokin_check_N: Cdc1 34.3 1.2E+02 0.0025 20.6 4.6 19 32-50 9-27 (73)
128 cd02413 40S_S3_KH K homology R 33.8 1.5E+02 0.0033 20.1 6.3 27 33-59 47-73 (81)
129 COG5227 SMT3 Ubiquitin-like pr 32.9 1.8E+02 0.004 20.8 6.4 71 13-92 24-94 (103)
130 PTZ00380 microtubule-associate 32.0 58 0.0013 24.3 3.1 49 11-61 25-74 (121)
131 PRK06488 sulfur carrier protei 31.3 1.4E+02 0.003 18.9 5.5 51 30-93 10-60 (65)
132 PF11620 GABP-alpha: GA-bindin 31.3 1.4E+02 0.003 21.1 4.7 53 30-89 7-59 (88)
133 cd06403 PB1_Par6 The PB1 domai 30.7 1.8E+02 0.004 20.1 6.3 35 35-69 21-55 (80)
134 PF07929 PRiA4_ORF3: Plasmid p 30.2 2E+02 0.0044 22.0 6.1 46 13-58 4-50 (179)
135 PRK01777 hypothetical protein; 30.0 2E+02 0.0043 20.2 6.8 68 13-93 3-75 (95)
136 PF02991 Atg8: Autophagy prote 29.3 88 0.0019 22.5 3.6 50 12-62 15-68 (104)
137 PF08783 DWNN: DWNN domain; I 29.1 86 0.0019 21.2 3.3 38 27-64 11-50 (74)
138 cd05124 AFK Actin-Fragmin Kina 28.7 2.3E+02 0.005 23.6 6.3 35 27-61 24-58 (238)
139 KOG4598 Putative ubiquitin-spe 28.4 1.4E+02 0.003 29.2 5.5 64 27-94 878-942 (1203)
140 PF02209 VHP: Villin headpiece 27.6 42 0.00091 19.6 1.4 20 113-136 10-29 (36)
141 PF05120 GvpG: Gas vesicle pro 27.5 31 0.00067 23.8 0.9 23 114-136 47-69 (79)
142 PF12949 HeH: HeH/LEM domain; 27.0 47 0.001 19.3 1.5 16 33-48 1-16 (35)
143 PF07423 DUF1510: Protein of u 26.9 73 0.0016 26.0 3.1 37 30-66 143-180 (217)
144 PRK06944 sulfur carrier protei 26.2 1.7E+02 0.0037 18.2 6.1 53 28-93 8-60 (65)
145 PRK05738 rplW 50S ribosomal pr 26.1 1.3E+02 0.0029 20.9 4.0 35 27-61 22-56 (92)
146 KOG4239 Ras GTPase effector RA 26.0 1.3E+02 0.0028 26.2 4.6 82 28-119 216-305 (348)
147 PF02017 CIDE-N: CIDE-N domain 25.1 1.4E+02 0.0031 20.4 3.9 32 35-67 20-51 (78)
148 PTZ00397 macrophage migration 24.6 1.2E+02 0.0026 21.5 3.7 24 39-62 79-102 (116)
149 smart00143 PI3K_p85B PI3-kinas 24.6 1.1E+02 0.0023 21.1 3.1 23 28-50 2-24 (78)
150 PF02192 PI3K_p85B: PI3-kinase 24.5 1.1E+02 0.0025 20.8 3.3 23 28-50 2-24 (78)
151 cd01764 Urm1 Urm1-like ubuitin 24.3 2.5E+02 0.0054 19.5 5.5 56 34-93 27-89 (94)
152 PRK05863 sulfur carrier protei 23.8 2E+02 0.0044 18.3 5.4 53 28-93 8-60 (65)
153 cd01768 RA RA (Ras-associating 23.7 2.2E+02 0.0049 18.7 8.7 53 27-79 14-68 (87)
154 cd06539 CIDE_N_A CIDE_N domain 23.6 2.1E+02 0.0045 19.7 4.4 33 34-67 19-51 (78)
155 smart00266 CAD Domains present 22.9 2.2E+02 0.0047 19.4 4.4 33 34-67 17-49 (74)
156 PF06372 Gemin6: Gemin6 protei 22.5 29 0.00063 27.2 0.0 25 116-140 93-118 (166)
157 PRK07696 sulfur carrier protei 22.2 2.3E+02 0.005 18.3 5.6 53 29-93 9-62 (67)
158 TIGR01687 moaD_arch MoaD famil 22.2 2.5E+02 0.0053 18.6 7.1 21 28-49 18-38 (88)
159 PF07076 DUF1344: Protein of u 21.7 1.5E+02 0.0033 19.4 3.3 42 48-95 9-50 (61)
160 cd01611 GABARAP Ubiquitin doma 21.4 2E+02 0.0043 20.9 4.2 50 12-62 23-76 (112)
161 cd01615 CIDE_N CIDE_N domain, 21.2 2.4E+02 0.0052 19.3 4.4 33 34-67 19-51 (78)
162 TIGR03636 L23_arch archaeal ri 21.1 1.9E+02 0.0042 19.6 3.9 35 27-61 16-50 (77)
163 PF02677 DUF208: Uncharacteriz 21.1 58 0.0013 25.8 1.5 25 117-141 36-66 (176)
164 cd01612 APG12_C Ubiquitin-like 21.1 2E+02 0.0044 19.8 4.1 34 28-62 18-51 (87)
165 KOG2086 Protein tyrosine phosp 20.7 3.2E+02 0.007 24.3 6.1 69 12-86 304-373 (380)
166 PF09192 Act-Frag_cataly: Acti 20.4 1.8E+02 0.0039 24.7 4.3 35 27-61 55-89 (275)
167 PRK06083 sulfur carrier protei 20.4 3E+02 0.0064 18.9 7.5 54 28-93 26-79 (84)
No 1
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-36 Score=237.71 Aligned_cols=148 Identities=36% Similarity=0.541 Sum_probs=128.9
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
+|+|+|+|+. ..+..|+++++++||.+||.||+.+||+++++|+|.+|+.++++...|+++++.|++|++.||.+|||+
T Consensus 1 ~v~v~Iss~~-~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 1 MVRVVISSSL-NDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred CeEEEEeccc-ccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 5899999665 445899999999999999999999999999999999998888888889999999999999999999999
Q ss_pred eCCCCcccCCCccccCCcceeeecCHHHhhcccchHHHHHHHHh--ccCch---hhhhhcchhhHHhhccc-cCCCCC
Q 031156 93 DLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEKVL--SQNPS---AVENKLSNNYMEDLCSN-ITETDV 164 (165)
Q Consensus 93 D~~p~s~~~~~~l~d~s~veky~lsee~Y~kr~dtv~~~kk~~k--~f~p~---~~~~~~~~~~~~~~a~~-~~v~~~ 164 (165)
|.++.++.+ ++|+|.|+||+||+|+|.+|+||||+||++++ |||.+ +++.+.+..+.++.++. |.||+.
T Consensus 80 D~~~~~~~~---~~d~s~veky~iSee~Y~qRtdSvr~~kk~~~~gryn~~~~~q~ea~~~~~~~e~~~~~~i~vG~r 154 (234)
T KOG3206|consen 80 DSNAQSISN---TEDESIVEKYEISEEDYLQRTDSVRRFKKKHGYGRYNAEEQAQAEAEAKQDLAEERAQATIAVGRR 154 (234)
T ss_pred ecCcccccc---ccccccceeeecCHHHHhhhhHHHHHHHHHhcccccchhhhhHHHHHhHHHHHHHHHhhccccCCe
Confidence 999988843 89999999999999999999999999999999 99988 44444434444444443 999973
No 2
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.93 E-value=2.1e-25 Score=156.46 Aligned_cols=86 Identities=38% Similarity=0.574 Sum_probs=74.6
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE-cCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY-DDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~-~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
+|+|.|+|+....++.|+||++++||++||.||+.+||+||+.|+|.++ +.++..+..+++|.++|++||+++|++|||
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 5899999988877899999999999999999999999999999999999 466677777899999999999999999999
Q ss_pred EeCCCCc
Q 031156 92 IDLDPSS 98 (165)
Q Consensus 92 ~D~~p~s 98 (165)
+|++|+|
T Consensus 81 ~D~~p~s 87 (87)
T PF14560_consen 81 VDTNPSS 87 (87)
T ss_dssp EE-T---
T ss_pred EeCCCCC
Confidence 9999976
No 3
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.91 E-value=3.3e-24 Score=149.97 Aligned_cols=84 Identities=33% Similarity=0.536 Sum_probs=76.2
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
+|+|.|+++. +.++.|+||+++|||++||+||+.+||+||+.|+|.+++..+..++.|++|.++|++||+++|++|||+
T Consensus 1 ~v~v~i~~~~-~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 1 TVTVNITSSA-DSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred CEEEEEEeCC-CceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 4789999765 578999999999999999999999999999999999897666666668899999999999999999999
Q ss_pred eCCCC
Q 031156 93 DLDPS 97 (165)
Q Consensus 93 D~~p~ 97 (165)
|++|.
T Consensus 80 D~~p~ 84 (84)
T cd01789 80 DVSGT 84 (84)
T ss_pred eCCCC
Confidence 99984
No 4
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.51 E-value=8.8e-14 Score=94.89 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=60.6
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
+.|.|.+ +.+....++++++.||++||++|+...|+||+.|||++ .|+ +.+|+.+|++|||++|++||+-
T Consensus 2 ~~i~vkt--~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~---~Gk----~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCND--RLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKK---WYT----IFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEEC--CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEe---CCc----CCCCCCCHHHcCCCCCCEEEEE
Confidence 5677764 56678889999999999999999999999999999975 365 3567889999999999999984
No 5
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.50 E-value=1.1e-13 Score=92.41 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=61.0
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++|.|+. +.+....++++++.||++||++|+..+|+||+.|+|.+ +|+. .+|+.+|++||+++|++|||+.
T Consensus 1 i~i~vk~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~----L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKT--LDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY---SGRV----LKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCEE----CCCcCcHHHCCCCCCCEEEEEe
Confidence 4677775 44567889999999999999999999999999999975 4653 4678899999999999999975
No 6
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.49 E-value=1.2e-13 Score=92.35 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=59.9
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
|+|.|+++ +...++++++++||++||++|+..+|+||+.|+|.+. |+. | +|+.+|++||+++|++|||+
T Consensus 1 i~i~vk~~---g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~---l-~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG---GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK---GKE---R-DDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC---CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC---Ccc---c-CccCcHHHcCCCCCCEEEEe
Confidence 57888874 4578999999999999999999999999999999753 653 3 56789999999999999986
No 7
>PTZ00044 ubiquitin; Provisional
Probab=99.47 E-value=2e-13 Score=92.67 Aligned_cols=71 Identities=21% Similarity=0.319 Sum_probs=61.4
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|+|+. +.+....+++++++||++||++|+..+|+|++.|+|. | +|+. | +|+.+|++|++++|++|||+-.
T Consensus 2 ~i~vk~--~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~--~g~~---L-~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 2 QILIKT--LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-Y--SGKQ---M-SDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred EEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-E--CCEE---c-cCCCcHHHcCCCCCCEEEEEEE
Confidence 466765 5566888999999999999999999999999999997 4 4764 3 5888999999999999999874
No 8
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.47 E-value=1.9e-13 Score=93.70 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=58.4
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCC-CCcEEEEE
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL-QGYRLHVI 92 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~-dg~~IhV~ 92 (165)
+|.|.-....+....+++++++||++||.+|+..+||||++|+| + .|+. |.+|.++|++||++ +|.++|+-
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~---~G~~---L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V---IGQR---LARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E---cCCe---eCCCcCCHHHcCCCCCCCEEEEE
Confidence 34444344445578899999999999999999999999999999 5 3553 56788999999999 88999985
No 9
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.46 E-value=2.9e-13 Score=91.33 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=61.4
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|.|.. +.+...+++++++.||++||++|+..+|+||+.|+|. + +|+. .+|+.+|++|++++|++||++-.
T Consensus 2 ~i~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~--~g~~----L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 2 LIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-Y--SGKQ----MNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred EEEEEe--CCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-E--CCeE----ccCCCCHHHcCCCCCCEEEEEEE
Confidence 466664 4566888999999999999999999999999999997 5 4664 35778999999999999999875
Q ss_pred C
Q 031156 95 D 95 (165)
Q Consensus 95 ~ 95 (165)
.
T Consensus 73 ~ 73 (76)
T cd01806 73 L 73 (76)
T ss_pred c
Confidence 3
No 10
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.46 E-value=1.4e-13 Score=94.13 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=58.3
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeCC
Q 031156 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 95 (165)
Q Consensus 23 l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~ 95 (165)
+++...++++++++||++||++|+..+|||++.|+|.+. |+ .++|+.+|++|+|++|++|||+-..
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~---G~----~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE---GI----FIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC---CE----EcCCCCcHHHcCCCCCCEEEEEEec
Confidence 566788999999999999999999999999999999763 65 3467799999999999999999864
No 11
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.44 E-value=4.4e-13 Score=90.96 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=61.2
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|+|+. +.+....++++++.||++||++|+..+|+|+++|+|++ +|+. .+|+.+|++|||++|++||++-.
T Consensus 2 ~i~vk~--~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~---~G~~----L~d~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 2 FLTVKL--LQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF---KGKA----LADDKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred EEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEE----CCCCCCHHHCCCCCCCEEEEEEc
Confidence 466664 45668889999999999999999999999999999964 4774 46779999999999999999864
No 12
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.42 E-value=6e-13 Score=90.39 Aligned_cols=68 Identities=19% Similarity=0.130 Sum_probs=58.9
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+|+|+. . ....++++++.||++||++|+..+|||+++|+|++ +|+. .+|+.+|++||++++++||++-
T Consensus 2 qi~vk~--~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~---~Gk~----L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 2 QLFVRA--Q--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL---AGVP----LEDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred EEEEEC--C--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE---CCeE----CCCCCCHHHcCCCCCCEEEEEE
Confidence 567774 2 36788999999999999999999999999999975 5774 4677999999999999999986
No 13
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.40 E-value=1.2e-12 Score=88.32 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=60.3
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|.|.. +.++...+.+++++||++||++|+..+|+|++.|+|. + +|+. .+|+.+|++||+++|++|||+-.
T Consensus 2 ~i~v~~--~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~--~g~~----L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 2 QIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-F--AGKQ----LEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred EEEEEc--CCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-E--CCEE----CCCCCcHHHcCCCCCCEEEEEEE
Confidence 456664 4566788999999999999999999999999999997 4 4653 46778999999999999999874
No 14
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.39 E-value=1.3e-12 Score=89.21 Aligned_cols=73 Identities=10% Similarity=-0.003 Sum_probs=60.6
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
|+|.|+++ +...+++++++.||++||++|+..+|+||+.|+|.+..-.|+ +..|+.+|++|++++|+.|+|+-
T Consensus 1 ~~i~vk~~---g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk----~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKWG---GQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGK----PAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEEC---CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCC----cCCCCcCHHHcCCCCCCEEEEEe
Confidence 46788864 356889999999999999999999999999999975111355 35678999999999999999873
No 15
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.38 E-value=1.7e-12 Score=87.13 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=56.8
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 23 l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+.+....+.++++.||++||++|+..+|+|+..|+|++ +|+. .+|+.+|++|||++|++|||+-
T Consensus 6 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~---~G~~----L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 6 NTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIF---AGKE----LRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEE---CCeE----CCCCCcHHHcCCCCCCEEEEEe
Confidence 45668889999999999999999999999999999964 5775 3678999999999999999973
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.38 E-value=1.3e-12 Score=88.31 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=57.1
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 23 l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+.|....+.++++.||++||++|+...|+|+..|+|++ .|+. ++|+.+|++|++++|++|||+-
T Consensus 6 ~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~---~G~~----L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 6 STGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF---SGKL----LTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeE----CCCCCCHHHcCCCCCCEEEEEe
Confidence 45668889999999999999999999999999999974 5774 5788999999999999999974
No 17
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.38 E-value=1.6e-12 Score=87.83 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=55.2
Q ss_pred CCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 24 KSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 24 ~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
.+....+++++++||++||++|+..+|+|++.|+|++ +|+. |.|+..+|.+||+++|+.||+.
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~---~Gk~---L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY---NGRE---LVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE---CCeE---ccCCcccHHHcCCCCCCEEEEe
Confidence 4557889999999999999999999999999999975 4775 5556689999999999999974
No 18
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.37 E-value=1.2e-12 Score=90.65 Aligned_cols=73 Identities=18% Similarity=0.047 Sum_probs=61.6
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHC--CCCCceEEEEEcCCCCeeeccCCCCCccCCCC--CCCCcEE
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG--TSVNSMSLELYDDTNTKVAALTDNSRPLGFYS--PLQGYRL 89 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tG--ip~~~q~L~l~~~~g~~i~~l~dD~~~L~~yg--v~dg~~I 89 (165)
|+|+|++++...+..++++++++||++||++|+...| .||+.|||+| .|+. +.|+.+|++|+ +.+|.+|
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy---~GKi----LkD~~tL~~~~~~~~~~~ti 74 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY---SGKL----LPDHLKLRDVLRKQDEYHMV 74 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEE---cCee----ccchhhHHHHhhcccCCceE
Confidence 7899998776644577888999999999999999885 5579999986 4874 46889999996 9999999
Q ss_pred EEEe
Q 031156 90 HVID 93 (165)
Q Consensus 90 hV~D 93 (165)
|++-
T Consensus 75 HLV~ 78 (79)
T cd01790 75 HLVC 78 (79)
T ss_pred EEEe
Confidence 9974
No 19
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.36 E-value=3.5e-12 Score=87.77 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=60.1
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++|.|+. ++++..+++++++.||++||++|+..+|+|++.|+|++ .|+. | +|+ +|++|||++|++|||+-
T Consensus 2 m~I~Vk~--~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~---~Gk~---L-~d~-~L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 2 MNLNIHS--TTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLH---RETR---L-SSG-KLQDLGLGDGSKLTLVP 71 (78)
T ss_pred eEEEEEE--CCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEE---CCcC---C-CCC-cHHHcCCCCCCEEEEEe
Confidence 4567764 45667889999999999999999999999999999975 3663 4 455 89999999999999987
Q ss_pred C
Q 031156 94 L 94 (165)
Q Consensus 94 ~ 94 (165)
+
T Consensus 72 ~ 72 (78)
T cd01804 72 T 72 (78)
T ss_pred e
Confidence 5
No 20
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.36 E-value=2.7e-12 Score=88.48 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=59.6
Q ss_pred EEEEEecCCCCce-EEEE-ecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 15 LLRVTHSNLKSFS-ADVR-FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 15 ~v~It~s~l~~~~-~e~r-~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
+|+|+. +++.. ..+. ++++.||++||++|+..+|+|++.|+|++ +|+. .+|+.+|++|||++|++||+.
T Consensus 2 ~I~vk~--~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~---~Gk~----L~D~~tL~~y~i~~~~~i~l~ 72 (78)
T cd01797 2 WIQVRT--MDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFY---RGKQ----MEDGHTLFDYNVGLNDIIQLL 72 (78)
T ss_pred EEEEEc--CCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe---CCEE----CCCCCCHHHcCCCCCCEEEEE
Confidence 456664 56665 5775 78999999999999999999999999975 4774 478899999999999999998
Q ss_pred eC
Q 031156 93 DL 94 (165)
Q Consensus 93 D~ 94 (165)
-.
T Consensus 73 ~~ 74 (78)
T cd01797 73 VR 74 (78)
T ss_pred Ee
Confidence 64
No 21
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.35 E-value=2.8e-12 Score=86.36 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=58.8
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
|+|.|+. +++. ..+.+++++||++||++|+..+|+|+++|+|.+ +|+. ..|+.+|.+||+++|++|||+-
T Consensus 1 ~~i~vk~--~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~---~Gk~----L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKT--PKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF---AGKI----LKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEc--CCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE---CCeE----cCCCCcHHHcCCCCCCEEEEEE
Confidence 4677774 3444 489999999999999999999999999999964 5764 3577899999999999999974
No 22
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.35 E-value=3.6e-12 Score=84.71 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=58.0
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 23 l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+.+...++.++++.||.+||++|+..+|+|+..|+|.+ .|+. | +|+.+|++||+++|++|||.-.
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~---~G~~---L-~d~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY---NGKE---L-DDDKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE---TTEE---E-STTSBTGGGTTSTTEEEEEEES
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeee---eeec---c-cCcCcHHHcCCCCCCEEEEEEe
Confidence 45668899999999999999999999999999999975 5774 3 8999999999999999998753
No 23
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.35 E-value=4.6e-12 Score=91.80 Aligned_cols=74 Identities=23% Similarity=0.235 Sum_probs=64.0
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
+..+|+|+. +.+....++++++.||++||++|+...|+|++.|+|++ +|+. .+|+.+|++|+|++|++|||
T Consensus 26 ~~M~I~Vk~--l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~---~Gk~----L~D~~tL~dy~I~~~stL~l 96 (103)
T cd01802 26 DTMELFIET--LTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIW---NNME----LEDEYCLNDYNISEGCTLKL 96 (103)
T ss_pred CCEEEEEEc--CCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE---CCEE----CCCCCcHHHcCCCCCCEEEE
Confidence 457788875 56667889999999999999999999999999999964 5774 46779999999999999999
Q ss_pred EeC
Q 031156 92 IDL 94 (165)
Q Consensus 92 ~D~ 94 (165)
.-.
T Consensus 97 ~~~ 99 (103)
T cd01802 97 VLA 99 (103)
T ss_pred EEe
Confidence 864
No 24
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.34 E-value=4.7e-12 Score=87.31 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=62.7
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++|.|+. +.++...+.++++.||++||++|+..+|+|++.|+|.+. -+|+. .+|+.+|++||+++|++|||+-
T Consensus 3 ~~i~Vk~--~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~-~~G~~----L~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 3 WDLKVKM--LGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHL-DSREV----LQDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred eEEEEEe--CCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEec-cCCCC----CCCCCCHHHcCCCCCCEEEEEE
Confidence 6777775 566788899999999999999999999999999999532 15663 4677899999999999999987
Q ss_pred CC
Q 031156 94 LD 95 (165)
Q Consensus 94 ~~ 95 (165)
.+
T Consensus 76 ~~ 77 (80)
T cd01792 76 QN 77 (80)
T ss_pred Ec
Confidence 53
No 25
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.34 E-value=6.8e-12 Score=85.19 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=62.2
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCC--CCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGT--SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGi--p~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
+|+|+. +.+....+.++++.||++||++|+..+|+ |+..|+|.+ +|+. | +|+.+|++||+++|++|+|.
T Consensus 2 ~i~vk~--~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~---~G~~---L-~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 2 KITFKT--LKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY---SGKI---L-KDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred EEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE---CCEE---c-cCCCCHHHcCCCCCCEEEEE
Confidence 566765 45567889999999999999999999999 999999975 4764 3 57789999999999999998
Q ss_pred eCCC
Q 031156 93 DLDP 96 (165)
Q Consensus 93 D~~p 96 (165)
-..|
T Consensus 73 ~~~~ 76 (77)
T cd01805 73 VSKP 76 (77)
T ss_pred EecC
Confidence 7765
No 26
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.34 E-value=3.6e-12 Score=86.55 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=59.1
Q ss_pred EEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 17 RVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 17 ~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|++ +.+....+.++++.||++||++|+..+|+|++.|+|.+ .|+. | .|+.+|.+|||++|++||+.-.
T Consensus 2 ~vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~G~~---L-~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 2 LVRN--DKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSF---EGRP---M-EDEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred EEEC--CCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEEE
Confidence 4553 55668889999999999999999999999999999964 5774 3 5779999999999999999863
No 27
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.4e-11 Score=80.58 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=60.2
Q ss_pred EEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 18 VTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 18 It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
|+...|+++..++.+.|..+|..+|++++...||||.+|||+| .|+. ++|+.+-.+|++.-|+.||++
T Consensus 3 iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~---~gkq----m~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---AGKQ----MNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred eeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhh---cccc----ccccccHHHhhhccceeEeeC
Confidence 4445588889999999999999999999999999999999976 4763 578899999999999999974
No 28
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.17 E-value=4e-11 Score=85.99 Aligned_cols=83 Identities=12% Similarity=0.191 Sum_probs=66.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeCCCCcccCCCcccc
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPSSVTSGGWLED 107 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~p~s~~~~~~l~d 107 (165)
....++++.||++||.+|..++|+||..|+|.+. |. .|.||.++|++|||.+|++|++.-++|-.--.. .+|
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d---G~---~L~DDsrTLssyGv~sgSvl~LlideP~~d~~~--~~~ 88 (107)
T cd01795 17 KALLVSANQTLKELKIQIMHAFSVAPFDQNLSID---GK---ILSDDCATLGTLGVIPESVILLKADEPIADYAA--MDD 88 (107)
T ss_pred ceEEeCccccHHHHHHHHHHHhcCCcccceeeec---Cc---eeccCCccHHhcCCCCCCEEEEEecCCcccHHH--HHH
Confidence 3456899999999999999999999999999753 76 478999999999999999999999888543322 455
Q ss_pred CCcceeeecCHHHh
Q 031156 108 TSLVEKYTISEEEY 121 (165)
Q Consensus 108 ~s~veky~lsee~Y 121 (165)
+-+ --|+||-+
T Consensus 89 ~~~---~~~~~~~~ 99 (107)
T cd01795 89 VMQ---VCMPEEGF 99 (107)
T ss_pred HHH---hcCccccc
Confidence 443 35666643
No 29
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.14 E-value=1.3e-10 Score=75.22 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=53.7
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCc
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~ 87 (165)
++|.|++.. ...+++++++.||++||++|+..+|+|+..|+|.+ +|+. ..|+.+|.+||+++|+
T Consensus 1 ~~i~vk~~~---~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~---~g~~----L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD---GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY---KGKV----LEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC---ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEE----CCCCCCHHHcCCcCCC
Confidence 367788654 36789999999999999999999999999999975 3654 3567999999999985
No 30
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.10 E-value=4.1e-10 Score=73.79 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=55.6
Q ss_pred CCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 24 KSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 24 ~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
++....++++++.||++||.+|+..+|+|++.|+|. + +|+. .+|+.+|.+|++.+|++|+|.+.
T Consensus 6 ~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~-~--~g~~----l~d~~~l~~~~v~~~~~i~v~~~ 69 (69)
T cd01769 6 TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLI-Y--AGKI----LKDDKTLSDYGIQDGSTLHLVLR 69 (69)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-E--CCcC----CCCcCCHHHCCCCCCCEEEEEEC
Confidence 455788999999999999999999999999999995 4 4653 36788999999999999999863
No 31
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.10 E-value=1.2e-10 Score=79.93 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=46.4
Q ss_pred cCCCCHHHHHHHHHHHH--CCC-CCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 33 PLQMSVESVKDKLWRKC--GTS-VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 33 ~~~~TV~~LK~KLe~~t--Gip-~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+.+.||.+||++|+..+ |++ +++|||++ .|+. ++|+.+|++|||++|++||++-
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy---~GKi----L~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIH---CGRK----LKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEe---CCcC----CCCCCcHHHcCCCCCCEEEEEe
Confidence 45799999999999996 475 88999975 4773 5788999999999999999974
No 32
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.03 E-value=2.5e-09 Score=74.96 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=64.3
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
.+..|.|.|.+ ..+....+++.++.|+..||++++...|+|+++|+|.| +|+. .+++.|+.+|++++|++|
T Consensus 8 ~~~~i~I~v~~--~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f---~G~~----L~~~~T~~~l~m~d~d~I 78 (87)
T cd01763 8 ISEHINLKVKG--QDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF---DGQR----IRDNQTPDDLGMEDGDEI 78 (87)
T ss_pred CCCeEEEEEEC--CCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE---CCeE----CCCCCCHHHcCCCCCCEE
Confidence 34577888875 35668889999999999999999999999999999965 5764 367789999999999999
Q ss_pred EEEe
Q 031156 90 HVID 93 (165)
Q Consensus 90 hV~D 93 (165)
||+-
T Consensus 79 ~v~l 82 (87)
T cd01763 79 EVML 82 (87)
T ss_pred EEEE
Confidence 9985
No 33
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=2.8e-09 Score=92.91 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=63.9
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHC---CCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG---TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tG---ip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
++|+|++ +.+..+.+++++++||.+||++|+..+| +|+..|+|+| .|+. +.|+.+|.+|+|++|+.|+
T Consensus 1 MkItVKt--l~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy---~Gki----L~Dd~tL~dy~I~e~~~Iv 71 (378)
T TIGR00601 1 MTLTFKT--LQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIY---SGKI----LSDDKTVREYKIKEKDFVV 71 (378)
T ss_pred CEEEEEe--CCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEE---CCEE----CCCCCcHHHcCCCCCCEEE
Confidence 3567775 6777899999999999999999999999 9999999975 4774 4677899999999999999
Q ss_pred EEeCCC
Q 031156 91 VIDLDP 96 (165)
Q Consensus 91 V~D~~p 96 (165)
|+-+.|
T Consensus 72 vmv~k~ 77 (378)
T TIGR00601 72 VMVSKP 77 (378)
T ss_pred EEeccC
Confidence 988765
No 34
>PLN02560 enoyl-CoA reductase
Probab=98.90 E-value=7e-09 Score=88.29 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=63.2
Q ss_pred EEEEEecCCCCceE---EEEecCCCCHHHHHHHHHHHHCC-CCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 15 LLRVTHSNLKSFSA---DVRFPLQMSVESVKDKLWRKCGT-SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 15 ~v~It~s~l~~~~~---e~r~~~~~TV~~LK~KLe~~tGi-p~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
+|.|+. .+++.. +++++++.||++||.+|+...|+ +++.|||.+.+..|+......+|+++|.+||+++|++|+
T Consensus 2 ~I~Vk~--~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 2 KVTVVS--RSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV 79 (308)
T ss_pred EEEEEc--CCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE
Confidence 455653 234443 78999999999999999999997 899999987643443211234677899999999999999
Q ss_pred EEeCCCC
Q 031156 91 VIDLDPS 97 (165)
Q Consensus 91 V~D~~p~ 97 (165)
|.|..|+
T Consensus 80 ~kDLGpQ 86 (308)
T PLN02560 80 FKDLGPQ 86 (308)
T ss_pred EEeCCCc
Confidence 9999985
No 35
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.89 E-value=3.3e-09 Score=94.07 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=66.5
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
..|+|+|++... ..++.++.+.||.+||++|...+++++++++|+| .|+. +.|+.+|..|||+||.|||+
T Consensus 14 ~~irV~Vkt~~d---k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIf---aGrI----LKD~dTL~~~gI~Dg~TvHL 83 (493)
T KOG0010|consen 14 SLIRVTVKTPKD---KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIY---AGRI----LKDDDTLKQYGIQDGHTVHL 83 (493)
T ss_pred ceeEEEEecCCc---ceeEecccchHHHHHHHHHHHhcCCChhHeeeee---cCcc----ccChhhHHHcCCCCCcEEEE
Confidence 468999997654 5788999999999999999999999999999987 4874 45889999999999999999
Q ss_pred EeCCCC
Q 031156 92 IDLDPS 97 (165)
Q Consensus 92 ~D~~p~ 97 (165)
+-+.++
T Consensus 84 Vik~~~ 89 (493)
T KOG0010|consen 84 VIKSQP 89 (493)
T ss_pred EeccCC
Confidence 997653
No 36
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.5e-09 Score=83.26 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=60.7
Q ss_pred EEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 16 v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
|+|.+ ++++...+.+.++.||..+|+||+..+||||++|||++ .|+. +.|..+|++|+|+.-++||++..
T Consensus 3 ifVk~--l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlif---ag~q----LedgrtlSDY~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 3 IFVKT--LTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVLR 72 (156)
T ss_pred cchhh--ccccceeeeecccccHHHHHHhhhcccCCCchhhhhhh---hhcc----cccCCccccccccccceEEEEEE
Confidence 55664 67777889999999999999999999999999999976 4764 35679999999999999999984
No 37
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=5.8e-10 Score=80.99 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 23 l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
++++.+.+.+.|+.||..||++|....||||+.|+|++ +|+ ..+|..||+.||++..++||.+..
T Consensus 8 ~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~---~~k----~LED~~Tla~Y~i~~~~Tl~~~~r 72 (128)
T KOG0003|consen 8 LTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK----QLEDGRTLADYNIQKESTLHLVLR 72 (128)
T ss_pred eeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHh---ccc----ccccCCcccccCccchhhhhhhHH
Confidence 78889999999999999999999999999999999986 466 368999999999999999998874
No 38
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.71 E-value=3.1e-08 Score=72.65 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=62.1
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHH-----HHHCCC--CCceEEEEEcCCCCeeeccCCCCCccCCCC--
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLW-----RKCGTS--VNSMSLELYDDTNTKVAALTDNSRPLGFYS-- 82 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe-----~~tGip--~~~q~L~l~~~~g~~i~~l~dD~~~L~~yg-- 82 (165)
..|.|.++.++.+. .--.+|+++.||++||+||+ ...|+| +++|+|++ .|+. +.|+.+|++|+
T Consensus 3 ~~~e~kfrl~dg~d-igp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy---sGKi----LeD~~TL~d~~~p 74 (113)
T cd01814 3 EQIEIKFRLYDGSD-IGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS---AGKI----LENSKTVGECRSP 74 (113)
T ss_pred ccEEEEEEccCCCc-cCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe---CCee----cCCCCcHHHhCCc
Confidence 35667777655432 34578999999999999999 566777 99999976 5874 57889999999
Q ss_pred ----CCCCcEEEEEeCCCCcc
Q 031156 83 ----PLQGYRLHVIDLDPSSV 99 (165)
Q Consensus 83 ----v~dg~~IhV~D~~p~s~ 99 (165)
+..+.++||+.-.|.+-
T Consensus 75 ~g~~~~~~~TmHvvlr~~~~~ 95 (113)
T cd01814 75 VGDIAGGVITMHVVVQPPLAD 95 (113)
T ss_pred ccccCCCceEEEEEecCCCCC
Confidence 77779999999655433
No 39
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.61 E-value=1.8e-07 Score=62.54 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=58.5
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCC-CceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~-~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
++|.|.+.+ +....+++.++.|++.|.+++....|+|+ ..++|.| +|.. .+++.|+.+||+++|++|+|.
T Consensus 1 I~i~v~~~~--~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f---dG~~----L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQD--GKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF---DGKR----LDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETT--SEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE---TTEE----E-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCC--CCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE---CCEE----cCCCCCHHHCCCCCCCEEEEE
Confidence 577888643 44788999999999999999999999999 9999965 5765 366789999999999999986
No 40
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.44 E-value=6.7e-07 Score=61.06 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=47.4
Q ss_pred cCCCCHHHHHHHHHHHHCC-CCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 33 PLQMSVESVKDKLWRKCGT-SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 33 ~~~~TV~~LK~KLe~~tGi-p~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+++.||.+||..|+...+. ++..|+|.+- ..|+. | .|+.+|.+||+.+|++|||-|.
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~-~~g~~---L-~d~~tL~~~gv~~g~~lyvKDL 77 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLE-PKGKS---L-KDDDTLVDLGVGAGATLYVRDL 77 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeC-CCCcc---c-CCcccHhhcCCCCCCEEEEeeC
Confidence 7889999999999999875 7999999743 35654 3 4666899999999999999884
No 41
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.40 E-value=6.8e-07 Score=76.16 Aligned_cols=74 Identities=18% Similarity=0.145 Sum_probs=64.5
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHC--CCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCG--TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tG--ip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
+|+|+ +|.+.++++++.|+.||.+||.+|+...| .|+..|+|++ +|+. +.|+.+++.|+|.++.-|.|.
T Consensus 2 ~lt~K--tL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy---~Gki----L~D~~tv~Eykv~E~~fiVvM 72 (340)
T KOG0011|consen 2 KLTVK--TLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIY---SGKI----LKDETTVGEYKVKEKKFIVVM 72 (340)
T ss_pred eeEee--eccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeee---ccee----ccCCcchhhhccccCceEEEE
Confidence 45555 48888999999999999999999999999 9999999975 5873 589999999999999988888
Q ss_pred eCCCC
Q 031156 93 DLDPS 97 (165)
Q Consensus 93 D~~p~ 97 (165)
.+.+.
T Consensus 73 lsK~k 77 (340)
T KOG0011|consen 73 LSKDK 77 (340)
T ss_pred EecCc
Confidence 87653
No 42
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.23 E-value=9e-06 Score=55.56 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=60.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeCCCC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS 97 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~p~ 97 (165)
...++++|..+|..||+||..--|++- .|||.|..++|+- .+..+..+|++|||=..-.|.|.+|.|+
T Consensus 12 dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~r--qlL~s~~sLA~yGiFs~~~i~lleT~p~ 79 (80)
T cd01811 12 DWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGER--QLLSSRKSLADYGIFSKTNICLLETFPP 79 (80)
T ss_pred ceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCccc--ccccccccHhhhcceeccEEEEEecCCC
Confidence 567899999999999999999999986 9999998877753 2568899999999999999999999874
No 43
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.13 E-value=4.9e-06 Score=57.66 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=42.3
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeecc-CCCCCccCCCCCCCCcEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAAL-TDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l-~dD~~~L~~ygv~dg~~IhV 91 (165)
.+-|.|.+.+. ...++++++.|+++|++||...+++|+..|.|. .+.++.. .+ .++.++|+++|++.|+-|++
T Consensus 4 ~milRvrS~dG---~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~-~~~~~~~--~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 4 SMILRVRSKDG---MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLS-KDRNNKE--ELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp --EEEEE-SSE---EEEEEE-TTSBHHHHHHHHHHHS---TTT---B-SSGGGGG--CSSS-TT-CCCCT---TT-EEE-
T ss_pred cEEEEEECCCC---CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEE-ecCCCCc--ccccCCcCCHHHcCCCCccEEEE
Confidence 34567775554 466789999999999999999999999999884 3322221 12 35789999999999998876
Q ss_pred E
Q 031156 92 I 92 (165)
Q Consensus 92 ~ 92 (165)
.
T Consensus 78 ~ 78 (80)
T PF11543_consen 78 K 78 (80)
T ss_dssp -
T ss_pred e
Confidence 4
No 44
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.07 E-value=2e-05 Score=57.99 Aligned_cols=60 Identities=12% Similarity=-0.058 Sum_probs=49.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCC-------CCCcEEEEEeC
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-------LQGYRLHVIDL 94 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv-------~dg~~IhV~D~ 94 (165)
.=....++.||.+||.+|+-++..||..|+|+ . ++. +++|+++|++||+ +.-++|-+.-.
T Consensus 14 iF~dakes~tVlelK~~iegI~k~pp~dQrL~-k--d~q----vLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 14 IFTDAKESTTVYELKRIVEGILKRPPEDQRLY-K--DDQ----LLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred EEeecCCcccHHHHHHHHHHHhcCChhHheee-c--Cce----eecccccHHHcCccccccccCCCCeEEEEEe
Confidence 44567899999999999999999999999996 3 443 5699999999999 55666655554
No 45
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.04 E-value=2.6e-05 Score=47.55 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=50.1
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
....+.+++..|+.+||.+|...+|+++..|.|.+ .|.. ..+...+.+|++.+|.+|++..
T Consensus 8 ~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~---~~~~----~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 8 KTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV---NGKI----LPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE---CCeE----CCCCCcHHHcCCCCCCEEEEEe
Confidence 36778889999999999999999999999999964 3432 2445555789999999999875
No 46
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.97 E-value=4.3e-05 Score=49.18 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=55.5
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 23 l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+.++.....+.+..+|..+|.+|+...|+|+..|+|.+ .|+. ..|+.+|.+|+|..++++|+...
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~---~~~~----l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF---GGKP----LEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE---CCEE----CcCCCcHHHhCCCCCCEEEEEEe
Confidence 56677888999999999999999999999999999864 2443 35669999999999999998764
No 47
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=1.5e-05 Score=76.20 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=62.3
Q ss_pred EEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeCC
Q 031156 16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 95 (165)
Q Consensus 16 v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~ 95 (165)
|.|++ |..+..++-+...+||.+||..|...+.|+...|||++ .|+. +.|++++..|+| ||-+|||++--
T Consensus 5 v~vkt--ld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~---~grv----l~~~k~vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 5 VLVKT--LDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIY---QGRV----LQDDKKVQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred eeeee--cccceeEEEechHHHHHHHHHHHHHhcccccccceeee---ccee----eccchhhhhccC-CCeEEEeeccC
Confidence 55554 77778899999999999999999999999999999986 4875 478899999999 99999999964
Q ss_pred C
Q 031156 96 P 96 (165)
Q Consensus 96 p 96 (165)
|
T Consensus 75 p 75 (1143)
T KOG4248|consen 75 P 75 (1143)
T ss_pred C
Confidence 4
No 48
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.61 E-value=0.00039 Score=51.03 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=50.1
Q ss_pred EEEEEEecCCCCc-eEEEEecCCCCHHHHHHHHHHH-------HCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCC
Q 031156 14 VLLRVTHSNLKSF-SADVRFPLQMSVESVKDKLWRK-------CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQ 85 (165)
Q Consensus 14 V~v~It~s~l~~~-~~e~r~~~~~TV~~LK~KLe~~-------tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~d 85 (165)
|.|...- ..|. ..+.+|++++||++||+.|... .-..++.+||++ .|+. ++|..+|+++.+..
T Consensus 3 i~lkf~l--~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~---~Gri----L~d~~tL~~~~~~~ 73 (111)
T PF13881_consen 3 IELKFRL--ADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY---AGRI----LEDNKTLSDCRLPS 73 (111)
T ss_dssp EEEEEEE--TTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE---TTEE----E-SSSBTGGGT--T
T ss_pred EEEEEEE--eCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEe---CCee----cCCcCcHHHhCCCC
Confidence 4555543 3455 6889999999999999999842 234578899976 4884 47999999998876
Q ss_pred Cc------EEEEEeCC
Q 031156 86 GY------RLHVIDLD 95 (165)
Q Consensus 86 g~------~IhV~D~~ 95 (165)
|. ++||+-..
T Consensus 74 ~~~~~~~~vmHlvvrp 89 (111)
T PF13881_consen 74 GETPGGPTVMHLVVRP 89 (111)
T ss_dssp TSETT--EEEEEEE-S
T ss_pred CCCCCCCEEEEEEecC
Confidence 65 78888854
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00011 Score=63.02 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=64.5
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeee-ccCCCCCccCCCCCCCCc
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA-ALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~-~l~dD~~~L~~ygv~dg~ 87 (165)
.++..|++..+.... ..++-+....||.+++.+|++.+|+.+..|+|.+.+.+|+.-. .-.+-+..|.+|+|++|.
T Consensus 334 ~pdkrvk~l~~~~~v---~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGD 410 (418)
T KOG2982|consen 334 IPDKRVKALNSGPKV---IASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGD 410 (418)
T ss_pred CchheeeeeccCCcc---ccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCC
Confidence 455566666664332 5677888899999999999999999999999999888887421 123568899999999999
Q ss_pred EEEEEe
Q 031156 88 RLHVID 93 (165)
Q Consensus 88 ~IhV~D 93 (165)
.+.|..
T Consensus 411 s~lvqe 416 (418)
T KOG2982|consen 411 SFLVQE 416 (418)
T ss_pred Eeeeec
Confidence 987753
No 50
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0012 Score=58.82 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=56.8
Q ss_pred EEEEEEecCCCCceEEEE-ecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 14 VLLRVTHSNLKSFSADVR-FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r-~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
..|.|.++ +.-.... ++.+.|...||++|+..||+||..|++.+. +| +..|+-.++..+|++|++|+|.
T Consensus 4 ~~v~VKW~---gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vK--Gg-----~a~dd~~~~al~iKpn~~lmMm 73 (473)
T KOG1872|consen 4 DTVIVKWG---GKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVK--GG-----LAKDDVDWGALQIKPNETLMMM 73 (473)
T ss_pred ceEeeeec---CccccceeccCCCchHHHHHHHHHhcCCCccceeEEEe--cc-----cccccccccccccCCCCEEEee
Confidence 45666643 2234445 889999999999999999999999998876 34 3456667889999999999999
Q ss_pred eCC
Q 031156 93 DLD 95 (165)
Q Consensus 93 D~~ 95 (165)
=+.
T Consensus 74 Gt~ 76 (473)
T KOG1872|consen 74 GTA 76 (473)
T ss_pred ccc
Confidence 863
No 51
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.17 E-value=0.00086 Score=45.86 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=47.5
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCce----EEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSM----SLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q----~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
.++|.|...+ +...++.+|.+.+|++|-.-|-...|.+.... .+.+....|.. .+++.+|.++||.+|..
T Consensus 2 ~~rVtv~~~~--~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~----L~~~~tL~~~gV~dGd~ 75 (79)
T PF08817_consen 2 LCRVTVDAGN--GRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRP----LDPDQTLADAGVRDGDV 75 (79)
T ss_dssp EEEEEEE-TT----EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEE----EETTSBCGGGT--TT-E
T ss_pred EEEEEEEcCC--CcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcc----cCCcCcHhHcCCCCCCE
Confidence 4677777543 35899999999999999999999999754432 24444344543 47889999999999999
Q ss_pred EEE
Q 031156 89 LHV 91 (165)
Q Consensus 89 IhV 91 (165)
|++
T Consensus 76 L~L 78 (79)
T PF08817_consen 76 LVL 78 (79)
T ss_dssp EEE
T ss_pred EEe
Confidence 876
No 52
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.16 E-value=0.00032 Score=50.25 Aligned_cols=59 Identities=22% Similarity=0.133 Sum_probs=46.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCC-------CCCCcEEEE
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYS-------PLQGYRLHV 91 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~yg-------v~dg~~IhV 91 (165)
.=....++.||-+||.+|+.++.-|++.|+|+..+.+ .+.+|.++|+++| ++.-.++-+
T Consensus 14 if~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e-----qlL~D~ktL~d~gfts~~ak~q~pA~vgL 79 (110)
T KOG4495|consen 14 IFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE-----QLLDDGKTLGDCGFTSQTAKPQAPATVGL 79 (110)
T ss_pred EEeecCccccHHHHHHHHHHHHhCCCcchheeecCHH-----HHhhccchhhhccccccccccCCCceeee
Confidence 3456678999999999999999999999999765432 2678999999995 444455555
No 53
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00023 Score=47.44 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=51.6
Q ss_pred cCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 21 SNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 21 s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
.+.-|+-..+...++.||+++|.-|...||+.|....|. + ...+..|.-+|.+|-+.+|+.+.+
T Consensus 7 nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~------k-~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 7 NDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLK------K-WYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred hhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHH------h-hhhhhhcccceeeEEeccCccEEE
Confidence 334456677888999999999999999999999987764 1 112568899999999999997754
No 54
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=96.76 E-value=0.0054 Score=42.58 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=41.3
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCC
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTN 65 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g 65 (165)
+|+|+.+. ..-+|++++++..+|.+||....++|++..+|.|.+.++
T Consensus 4 vvKV~f~~------tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s 50 (80)
T cd06406 4 VVKVHFKY------TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEAS 50 (80)
T ss_pred EEEEEEEE------EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCC
Confidence 67787773 578999999999999999999999999999999987543
No 55
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.69 E-value=0.058 Score=36.56 Aligned_cols=77 Identities=19% Similarity=0.132 Sum_probs=58.7
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCc-eEEEEEcCCCCeeeccCCC-CCccCCCCCCCCc
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNS-MSLELYDDTNTKVAALTDN-SRPLGFYSPLQGY 87 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~-q~L~l~~~~g~~i~~l~dD-~~~L~~ygv~dg~ 87 (165)
....++|.|.-.+. ....++|.++.||.+|..-|....+.+... -.|.- .-..+.+ ..+ +.+|.+.|+.+..
T Consensus 3 ~~~~~~I~vRlpdG--~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~-~~Pr~~l---~~~~~~tl~e~~l~p~~ 76 (82)
T PF00789_consen 3 ESDVVRIQVRLPDG--SRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELIT-AFPRREL---TDEDSKTLEEAGLLPSA 76 (82)
T ss_dssp TSSEEEEEEEETTS--TEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEE-SSSTEEC---CSTTTSBTCCCTTSSCE
T ss_pred CCCEEEEEEECCCC--CEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEe-CCCCcCC---CccccccHHHhcCCCCe
Confidence 45678899997664 489999999999999999999998888764 45532 1112332 333 5999999999999
Q ss_pred EEEEE
Q 031156 88 RLHVI 92 (165)
Q Consensus 88 ~IhV~ 92 (165)
.|+|.
T Consensus 77 ~l~v~ 81 (82)
T PF00789_consen 77 TLIVE 81 (82)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 56
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=96.47 E-value=0.04 Score=38.92 Aligned_cols=67 Identities=9% Similarity=0.020 Sum_probs=48.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeCC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 95 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~ 95 (165)
...+.|+...||+.+...+...+.| +...||.-+...+ ....|.+...||.+.|+.+|..|.+.-.|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~-~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSEN-SYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTT-CEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCc-chhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 5678999999999999999999999 7778998875444 33447788899999999999988777655
No 57
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=95.59 E-value=0.084 Score=35.55 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=42.4
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeee
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~ 69 (165)
++|.+.. .+....+.++++.|..+|+.+|...++++....+|.+.+.+|..+.
T Consensus 2 ~~vK~~~---~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~ 54 (81)
T smart00666 2 VDVKLRY---GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVS 54 (81)
T ss_pred ccEEEEE---CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEE
Confidence 3455554 2346678889999999999999999999988899999988787553
No 58
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.58 E-value=0.079 Score=41.42 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=44.9
Q ss_pred EEEEEEecCCCCc----eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCC
Q 031156 14 VLLRVTHSNLKSF----SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL 84 (165)
Q Consensus 14 V~v~It~s~l~~~----~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~ 84 (165)
|+|.|++ +.++ +..+.++++.||.+|+.+|...+++|+..| ++|+...+..+. ..++..+..+...
T Consensus 1 i~Vlvss--~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~-~~L~~~~n~~l~--~~~~~~~s~l~~~ 70 (162)
T PF13019_consen 1 INVLVSS--FDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQ-LYLTTNSNGQLS--PSSDIPLSSLLSS 70 (162)
T ss_pred CeEEEec--CCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccce-eEEEEeCCCeeC--CCccccHHhhccC
Confidence 4677775 4442 577888999999999999999999999987 444443343321 2445555555433
No 59
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.41 E-value=0.049 Score=45.49 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=51.9
Q ss_pred eEEEEecCCCCHHHHHHH-HHHHHCCCCCceEEEEEc-CCCCeeeccCCCCCccCCCCCCCCcEEEEEeCCCC
Q 031156 27 SADVRFPLQMSVESVKDK-LWRKCGTSVNSMSLELYD-DTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDPS 97 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~K-Le~~tGip~~~q~L~l~~-~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~p~ 97 (165)
..++..+...||.+|+.+ +.....+.|..+|+.++- +.|++ + -|+.+|.+||..+|.+|.|.|..|+
T Consensus 14 ~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkp---l-~~~s~l~e~~~~s~~~i~vKDLGpQ 82 (297)
T KOG1639|consen 14 IKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKP---L-IDNSKLQEYGDGSGATIYVKDLGPQ 82 (297)
T ss_pred eeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcc---c-cchhHHHHhccCCCCEEEEeccCCc
Confidence 345778889999999954 556678888777777764 34655 2 3556799999999999999999985
No 60
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.40 E-value=0.15 Score=35.57 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=56.3
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeecc----CCCCCccCCCCCCCCc
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAAL----TDNSRPLGFYSPLQGY 87 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l----~dD~~~L~~ygv~dg~ 87 (165)
..++|.|+-++.+ ..++||..+.||..|-.=+... |-.|..-.|..-.+ -+.+..+ .+.+.||.+-|+.+..
T Consensus 3 ~~~~I~iRlp~G~--Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FP-rr~~~~~~~~~~~~~~TL~eaGL~~s~ 78 (85)
T cd01774 3 DTVKIVFKLPNGT--RVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFP-RRVLPCLPSEGDPPPPTLLEAGLSNSE 78 (85)
T ss_pred ceEEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCC-CccccccccccCcCCCCHHHcCCCCcc
Confidence 4788899875544 8899999999999999999654 44555556643111 1232222 2457899999999999
Q ss_pred EEEEEeC
Q 031156 88 RLHVIDL 94 (165)
Q Consensus 88 ~IhV~D~ 94 (165)
.|.|.|.
T Consensus 79 ~L~V~d~ 85 (85)
T cd01774 79 VLFVQDL 85 (85)
T ss_pred EEEEecC
Confidence 9999873
No 61
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=94.98 E-value=0.18 Score=34.96 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=36.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCC-CceEEEEEcCCCCee
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKV 68 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~-~~q~L~l~~~~g~~i 68 (165)
...+++++++++.+|+++|..++++.. +...|.+.|.+|.++
T Consensus 11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v 53 (82)
T cd06407 11 KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWV 53 (82)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeE
Confidence 677899999999999999999999986 788899888777654
No 62
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.59 E-value=0.069 Score=36.66 Aligned_cols=69 Identities=22% Similarity=0.404 Sum_probs=46.6
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeee-----ccCCCCCccCCCCCCCCcE
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA-----ALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~-----~l~dD~~~L~~ygv~dg~~ 88 (165)
|+|..+| ..+.....|+|...+|..|=.-+.. .+++.+++.+|.+|. .+..++..|.+|+|.+|.+
T Consensus 7 VTvD~t~--y~g~~yDLrl~d~~pikklIdivwe-------~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~ 77 (81)
T COG5417 7 VTVDFTN--YNGGTYDLRLPDYLPIKKLIDIVWE-------SLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDI 77 (81)
T ss_pred EEEEeEe--cCCceEEEeccccchHHHHHHHHHH-------HhhccccccCCCEEEEeccceEecCCceEEeccccCCCE
Confidence 3444554 4566889999999999877555444 444555554554332 2456777899999999998
Q ss_pred EEE
Q 031156 89 LHV 91 (165)
Q Consensus 89 IhV 91 (165)
+.+
T Consensus 78 Lei 80 (81)
T COG5417 78 LEI 80 (81)
T ss_pred EEe
Confidence 865
No 63
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=94.56 E-value=0.17 Score=34.11 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=42.4
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeee
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~ 69 (165)
|.|.+....-. ...+.++.+.|..+|+.+|...+|.++...+|.+.|.+|..+.
T Consensus 2 ~~vK~~~~~~~--~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~ 55 (84)
T PF00564_consen 2 VRVKVRYGGDI--RRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVT 55 (84)
T ss_dssp EEEEEEETTEE--EEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEE
T ss_pred EEEEEEECCee--EEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEE
Confidence 55666654321 2236788999999999999999999999999999988887554
No 64
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=94.47 E-value=0.56 Score=31.75 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=52.8
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCC-C-CCccCCCCCCCCcEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTD-N-SRPLGFYSPLQGYRL 89 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~d-D-~~~L~~ygv~dg~~I 89 (165)
+..+|.|+-.+. ...+++|+++.||.+|.+-+....|.....-.| ...--+. .+.+ | +.+|.+.|+-+...|
T Consensus 3 ~~~~I~iRlPdG--~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L--~t~~Prk--~l~~~d~~~tL~e~gL~p~~~l 76 (80)
T smart00166 3 DQCRLQIRLPDG--SRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTL--NSPFPRR--TFTKDDYSKTLLELALLPSSTL 76 (80)
T ss_pred CeEEEEEEcCCC--CEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEE--EeCCCCc--CCccccccCCHHHCCCCCceEE
Confidence 467788886554 478999999999999999997666665544454 3222221 1233 3 689999999988888
Q ss_pred EEE
Q 031156 90 HVI 92 (165)
Q Consensus 90 hV~ 92 (165)
.|.
T Consensus 77 ~v~ 79 (80)
T smart00166 77 VLE 79 (80)
T ss_pred EEe
Confidence 764
No 65
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.44 E-value=1.3 Score=30.33 Aligned_cols=78 Identities=14% Similarity=0.013 Sum_probs=56.6
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
.+.++|.|.-.+. ...++||..+.|+..|-.=+... |.++..-+|.---+ -+.+. -.+.+.+|.+.|+.+..+|.
T Consensus 2 ~~~~~i~iRlP~G--~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fP-Rk~~~-~~d~~~TL~e~gL~p~~~L~ 76 (80)
T cd01771 2 EPISKLRVRTPSG--DFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWP-RRDLT-QLDPNFTLLELKLYPQETLI 76 (80)
T ss_pred CCeEEEEEECCCC--CEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCC-CCCCc-CCCCCCcHHHcCCCCCcEEE
Confidence 5678999996554 48899999999999999999875 87777666632111 12322 12446799999999999888
Q ss_pred EEe
Q 031156 91 VID 93 (165)
Q Consensus 91 V~D 93 (165)
|..
T Consensus 77 Vee 79 (80)
T cd01771 77 LEE 79 (80)
T ss_pred EEc
Confidence 853
No 66
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=93.34 E-value=0.21 Score=35.32 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=36.5
Q ss_pred eEEEEecC-----CCCHHHHHHHHHHHHCCCC-CceEEEEEcCCCCeeeccCCC
Q 031156 27 SADVRFPL-----QMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVAALTDN 74 (165)
Q Consensus 27 ~~e~r~~~-----~~TV~~LK~KLe~~tGip~-~~q~L~l~~~~g~~i~~l~dD 74 (165)
...++++. +++..+|++||...+.+++ ....|.+.|.+|..+. +..|
T Consensus 11 ~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~-l~~D 63 (91)
T cd06398 11 LRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVT-LVDD 63 (91)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEE-EccH
Confidence 44556664 6999999999999999998 6778888888887654 4444
No 67
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.28 Score=42.40 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=50.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeCCC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 96 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~p 96 (165)
...+.++.+.+|.+||+-+++.+|+|+++.+++|- |+. | .++.++..+.+.--+.+|++..+|
T Consensus 15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFa---GKe---L-s~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFA---GKE---L-SNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred ceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEe---ccc---c-ccCceeecccccccchhhhhccCc
Confidence 45677888889999999999999999999999764 774 3 456677766666667788887777
No 68
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.10 E-value=1.1 Score=30.40 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=51.2
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCC-CCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDT-NTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~-g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
..++|.|+-.+. .....+|+.+.||.+|.+-+....+.+ ..-.| ...- .+.+. ..+.+.+|.+.|+.+...|+
T Consensus 3 ~~~~i~iRlp~G--~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L--~t~fPrk~~~-~~d~~~TL~elgL~Psa~L~ 76 (79)
T cd01772 3 TETRIQIRLLDG--TTLKQTFKAREQLAAVRLFVELNTGNG-GPFTL--MTPFPRKVFT-EDDMEKPLQELGLVPSAVLI 76 (79)
T ss_pred cEEEEEEECCCC--CEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEE--EeCCCCeECC-cccccCCHHHCCCCCceEEE
Confidence 356778885443 478899999999999999998776544 22333 2211 22221 11337899999999999988
Q ss_pred EE
Q 031156 91 VI 92 (165)
Q Consensus 91 V~ 92 (165)
|.
T Consensus 77 v~ 78 (79)
T cd01772 77 VT 78 (79)
T ss_pred Ee
Confidence 74
No 69
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.81 E-value=0.92 Score=31.01 Aligned_cols=71 Identities=14% Similarity=0.045 Sum_probs=48.7
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCC-CceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~-~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
+..+|.|+-.+. ....++|+.+.||++|.+=+....+.+. ..-.|..-.+ .+. +.+++.+|.+.|+.+.+.
T Consensus 3 p~t~iqiRlpdG--~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP-~k~---l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 3 PTTSIQIRLADG--KRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFP-VKE---LSDESLTLKEANLLNAVI 74 (79)
T ss_pred CeeEEEEECCCC--CEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCC-Ccc---cCCCCCcHHHCCCcCcEE
Confidence 357788886544 4788999999999999999998765432 2233421112 233 456689999999987553
No 70
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=92.81 E-value=1.4 Score=29.41 Aligned_cols=73 Identities=10% Similarity=0.039 Sum_probs=47.8
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcC-CCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDD-TNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~-~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
..+|.|+-++. ...+++|+.+.||.+|.+=|....+- +..-.| ... ..+.+. ..+.+.+|.+.|+.+ +.+.|
T Consensus 2 ~t~i~iRlpdG--~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L--~t~~Pr~~~~-~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDG--KRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTL--MTSFPRRVLT-DLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCC--CEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEE--EeCCCCccCC-CCCccCcHHHcCCcc-ceEEE
Confidence 46777886554 47899999999999999999876554 333344 221 122221 113688999999995 44544
Q ss_pred E
Q 031156 92 I 92 (165)
Q Consensus 92 ~ 92 (165)
.
T Consensus 75 ~ 75 (77)
T cd01767 75 R 75 (77)
T ss_pred E
Confidence 3
No 71
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=92.68 E-value=0.68 Score=30.82 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=35.9
Q ss_pred eEEEEec-CCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeee
Q 031156 27 SADVRFP-LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 27 ~~e~r~~-~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~ 69 (165)
...+.++ ...|..+|+.+|...+|++...-+|.+.+.+|..+.
T Consensus 11 ~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~ 54 (81)
T cd05992 11 IRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVT 54 (81)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEE
Confidence 5667788 999999999999999999876778888887776543
No 72
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=91.95 E-value=1.1 Score=31.14 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=37.2
Q ss_pred EEEEEEecCCCCceEEEEecC--CCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCee
Q 031156 14 VLLRVTHSNLKSFSADVRFPL--QMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV 68 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~--~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i 68 (165)
|+|.++... -....++++ .+|+.+|++.+..++|++ .-.|.+.|.+|..+
T Consensus 1 V~vKaty~~---d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~v 52 (81)
T cd06396 1 VNLKVTYNG---ESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEEV 52 (81)
T ss_pred CEEEEEECC---eEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCEE
Confidence 455566433 356678888 889999999999999999 55666777666543
No 73
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=2.6 Score=30.32 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=59.6
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
+..|+|.|..-. +-....++..+.++.-|..--....|++.++-|+ +| +|+.| .+..|=.+.+.++|..|-
T Consensus 18 ~~hi~LKV~gqd--~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RF-lF--dG~rI----~~~~TP~~L~mEd~D~Ie 88 (99)
T KOG1769|consen 18 SEHINLKVKGQD--GSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRF-LF--DGQRI----RETHTPADLEMEDGDEIE 88 (99)
T ss_pred cceEEEEEecCC--CCEEEEEeecCChHHHHHHHHHHHcCCccceEEE-EE--CCcCc----CCCCChhhhCCcCCcEEE
Confidence 468889888422 2245788899999999999999999999999998 45 57653 455677889999999998
Q ss_pred EEeC
Q 031156 91 VIDL 94 (165)
Q Consensus 91 V~D~ 94 (165)
|.-.
T Consensus 89 v~~~ 92 (99)
T KOG1769|consen 89 VVQE 92 (99)
T ss_pred EEee
Confidence 8763
No 74
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=91.40 E-value=1 Score=31.27 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=35.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeee
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~ 69 (165)
...+.|+...|+..|++||+..+.+|+..--|.+.|.+|..|.
T Consensus 11 ~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~IT 53 (82)
T cd06397 11 TRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEIT 53 (82)
T ss_pred eEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEE
Confidence 3455678899999999999999999998888888877776553
No 75
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=90.43 E-value=1.1 Score=31.03 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=36.0
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCC
Q 031156 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTN 65 (165)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g 65 (165)
+..-+++++..+.++|..+|....+.+++..+|.|...++
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~ 46 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGE 46 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCC
Confidence 3677899999999999999999999999999999886544
No 76
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=90.34 E-value=1.6 Score=30.65 Aligned_cols=40 Identities=15% Similarity=0.286 Sum_probs=33.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCee
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV 68 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i 68 (165)
..-++++++++..+|.+||...+|+. +..+|.+.|. |.++
T Consensus 13 v~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE-GD~i 52 (86)
T cd06408 13 TRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD-GDMI 52 (86)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC-CCCc
Confidence 57789999999999999999999996 5667777776 6543
No 77
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.91 E-value=5 Score=27.86 Aligned_cols=78 Identities=12% Similarity=0.003 Sum_probs=57.3
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
+.-+|.|+-.+. ...+++|..+.|+..|-.=+.. -|.++..-.|.---+ -+.+.. .+-+.+|.+.|+.+-.+|.|
T Consensus 4 ~~t~i~vRlP~G--~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FP-Rr~~~~-~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 4 PKARLMLRYPDG--KREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFP-RRKLSH-LDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred CeeEEEEECCCC--CEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCC-CcccCC-cccCCCHHHcCCCCCcEEEE
Confidence 456788886554 4899999999999999988887 477877777642112 233322 23468999999999999999
Q ss_pred EeC
Q 031156 92 IDL 94 (165)
Q Consensus 92 ~D~ 94 (165)
.|-
T Consensus 79 q~r 81 (82)
T cd01773 79 QER 81 (82)
T ss_pred ecC
Confidence 874
No 78
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=89.63 E-value=1.1 Score=31.99 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=36.5
Q ss_pred EEEEEEecCCCCceEEEEec--CCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccC
Q 031156 14 VLLRVTHSNLKSFSADVRFP--LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLG 79 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~--~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~ 79 (165)
+.|.++. .+.. ....++ ...||..||..|....+-.++..+|-|- -.|+. +.|...|.
T Consensus 3 l~IRFs~-sipD--l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI-~~Gr~----L~d~t~l~ 62 (97)
T PF10302_consen 3 LTIRFSD-SIPD--LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLI-YAGRL----LNDHTDLS 62 (97)
T ss_pred EEEEECC-CCCC--ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEee-ecCcc----cCccchhh
Confidence 4555553 3443 445555 8899999999999999666666555432 15774 34554443
No 79
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=0.21 Score=43.28 Aligned_cols=80 Identities=14% Similarity=0.020 Sum_probs=56.4
Q ss_pred ccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCC--CCceEEEEEcCCCCeeeccCCCCCccCCCCCC-
Q 031156 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTS--VNSMSLELYDDTNTKVAALTDNSRPLGFYSPL- 84 (165)
Q Consensus 8 ~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip--~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~- 84 (165)
...+.-|++.|++++-.-+-.++..+..|||+.||..|+.+.--. +.+|||++ +|+ |+.|...|.+.-.+
T Consensus 4 ~~~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliY---sgk----llld~qcl~d~lrkq 76 (391)
T KOG4583|consen 4 TIFEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIY---SGK----LLLDHQCLTDWLRKQ 76 (391)
T ss_pred ccCCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHh---hcc----ccccchhHHHHHHHH
Confidence 345668999999877665567888899999999999999886544 35789975 476 56677777665433
Q ss_pred -CCcEEEEEeC
Q 031156 85 -QGYRLHVIDL 94 (165)
Q Consensus 85 -dg~~IhV~D~ 94 (165)
.....|++-.
T Consensus 77 ~k~Hv~hlvcn 87 (391)
T KOG4583|consen 77 VKEHVKHLVCN 87 (391)
T ss_pred HHHHHHHHhcC
Confidence 2234455544
No 80
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=88.61 E-value=2.9 Score=38.52 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHH--CCC------CCceEEEEEcCCCCeeeccCCCC------
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDTNTKVAALTDNS------ 75 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------~~~q~L~l~~~~g~~i~~l~dD~------ 75 (165)
.-..++|.|.......-...+++=.-+||.|+|+||-... |+| +..+.|..+.+.+..+. |.|++
T Consensus 186 d~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~i-L~D~D~ts~~~ 264 (539)
T PF08337_consen 186 DYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLI-LQDEDSTSKVE 264 (539)
T ss_dssp -S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEE-ESSSSTTSEEE
T ss_pred ceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCccc-ccCCCCCcccC
Confidence 3346777766444333457788888889999999975542 332 46678887754432211 22221
Q ss_pred ------CccCCCCCCCCcEEEEEeCC
Q 031156 76 ------RPLGFYSPLQGYRLHVIDLD 95 (165)
Q Consensus 76 ------~~L~~ygv~dg~~IhV~D~~ 95 (165)
-||..|+|.+|++|-++...
T Consensus 265 ~~wkrLNTL~HY~V~dga~vaLv~k~ 290 (539)
T PF08337_consen 265 GGWKRLNTLAHYKVPDGATVALVPKQ 290 (539)
T ss_dssp TTEEE--BHHHHT--TTEEEEEEES-
T ss_pred CCceEeccHhhcCCCCCceEEEeecc
Confidence 27899999999999999864
No 81
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=87.52 E-value=2.8 Score=29.36 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=38.8
Q ss_pred CCCceEEEEecCCCCHHHHHHHHHHHHCCCC---CceEEEEEcCCCCee
Q 031156 23 LKSFSADVRFPLQMSVESVKDKLWRKCGTSV---NSMSLELYDDTNTKV 68 (165)
Q Consensus 23 l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~---~~q~L~l~~~~g~~i 68 (165)
..|+.+..++.|++.+.+|++-|...+|+.. ..-.|.|.|.+|..+
T Consensus 8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~V 56 (86)
T cd06409 8 PKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIV 56 (86)
T ss_pred CCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEE
Confidence 3677888899999999999999999999997 577788877777644
No 82
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.57 E-value=1.5 Score=35.85 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=47.7
Q ss_pred EEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCC--cEEEEEeCCC
Q 031156 30 VRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG--YRLHVIDLDP 96 (165)
Q Consensus 30 ~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg--~~IhV~D~~p 96 (165)
...+.-.|+.++|.+|+...|+.+..|++. + +|.+ .-|...|..++++.| ..|.|+-..+
T Consensus 161 lta~~~Dtv~eik~~L~Aaeg~D~~sQrif-~--Sg~~----l~dkt~LeEc~iekg~rYvlqviVlq~ 222 (231)
T KOG0013|consen 161 LTAPHYDTVGEIKRALRAAEGVDPLSQRIF-F--SGGV----LVDKTDLEECKIEKGQRYVLQVIVLQE 222 (231)
T ss_pred ecccCcCcHHHHHHHHHHhhccchhhheee-c--cCCc----eeccccceeeeecCCCEEEEEEEeccC
Confidence 445678899999999999999999999974 4 4554 356778999999999 6676666543
No 83
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=82.60 E-value=1.3 Score=30.96 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHH-HHHHCCCCCceEE---EEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeCC
Q 031156 34 LQMSVESVKDKL-WRKCGTSVNSMSL---ELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 95 (165)
Q Consensus 34 ~~~TV~~LK~KL-e~~tGip~~~q~L---~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~ 95 (165)
..+|+++|-+++ ....|.......+ .+|+++.... -..-.++|.++||.+|+.|.|.|-.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~--~~~l~k~L~elgi~~gs~L~v~D~~ 70 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEY--DDNLPKKLSELGIVNGSILTVDDFD 70 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSS--TTCTTSBGGGGT--TT-EEEEEETT
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchh--hhcccCChhHcCCCCCCEEEEEEcC
Confidence 468999999985 4467776633322 1233221000 1234789999999999999999964
No 84
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=79.75 E-value=7.7 Score=27.08 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=44.2
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHCCCCC-ceEEEEEcCCCCeeeccCCC-----CCccCCCCCCCCcEEEEE
Q 031156 26 FSADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDN-----SRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGip~~-~q~L~l~~~~g~~i~~l~dD-----~~~L~~ygv~dg~~IhV~ 92 (165)
-..-..++++.|..+|++++..++..+.. .-++...|..|.++. +..+ .-.|..-+=..+-.|||.
T Consensus 10 di~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~t-iSS~~EL~EA~rl~~~n~~~~l~ihvf 81 (83)
T cd06404 10 DIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCT-ISSQMELEEAFRLYELNKDSELNIHVF 81 (83)
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCcee-ecCHHHHHHHHHHHHhcCcccEEEEec
Confidence 35667889999999999999999999864 557777888787543 1111 112233333445577774
No 85
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=78.18 E-value=26 Score=31.57 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=57.2
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCC----CCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGT----SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGi----p~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
..+|.|.... +..+.-+|.+..|.+|=--|-.+.|= +.....-.+...+|.. .+.+++|.+.||.||..
T Consensus 2 l~RVtV~~~~---~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~p----L~~~~sL~~~gV~DG~~ 74 (452)
T TIGR02958 2 LCRVTVLAGR---RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSP----LDPDASLAEAGVRDGEL 74 (452)
T ss_pred eEEEEEeeCC---eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCC----CCCCCCHHHcCCCCCCe
Confidence 4567777432 36788899999999999999999975 3334455555566754 36789999999999999
Q ss_pred EEEEe
Q 031156 89 LHVID 93 (165)
Q Consensus 89 IhV~D 93 (165)
+++.-
T Consensus 75 L~L~p 79 (452)
T TIGR02958 75 LVLVP 79 (452)
T ss_pred EEEee
Confidence 99987
No 86
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=77.80 E-value=12 Score=26.62 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=30.9
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcC
Q 031156 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDD 63 (165)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~ 63 (165)
...-+.++.++|..+|+.||..++|++.. +.|.+.-+
T Consensus 23 ~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp 59 (97)
T cd06410 23 ETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQLP 59 (97)
T ss_pred ceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcC
Confidence 35567889999999999999999999987 77776543
No 87
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=76.18 E-value=13 Score=24.94 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=30.6
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCce
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSM 56 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q 56 (165)
+|+|+............+.++++.|..+|-..+-..+|++.+..
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~ 47 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPS 47 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGG
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCC
Confidence 55666542211112567899999999999999999999943333
No 88
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=75.69 E-value=15 Score=24.05 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=35.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCC----CCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGT----SVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGi----p~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.++.++...||.+|.+.|....+- ......+. . +|+.+. .++.+.+|++|.+.-
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~-v--Ng~~v~---------~~~~l~~gD~v~i~p 75 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIA-V--NGEYVR---------LDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEE-E--CCeEcC---------CCcccCCCCEEEEeC
Confidence 566777789999999999877542 22233332 2 454321 456799999998875
No 89
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=75.58 E-value=13 Score=29.80 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=39.1
Q ss_pred cEEEEEEecCCCCc-eEEEEecCCCCHHHHHHHHHHHHCCCCC-ceEEEEEc-CCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 13 SVLLRVTHSNLKSF-SADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYD-DTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 13 ~V~v~It~s~l~~~-~~e~r~~~~~TV~~LK~KLe~~tGip~~-~q~L~l~~-~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
.++|....+.+... ..++.++++-||++|.++|....|++.. ..+|-++. .+++....+ ..+.+|... .+...+
T Consensus 20 ~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~-~~d~~i~~l--~~~~~~ 96 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKIL-SEDEPISSL--NDYITL 96 (213)
T ss_dssp -EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS----TTEE
T ss_pred EEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeec-CCCCchhhc--cCccee
Confidence 46777765544433 4788899999999999999999999876 33444443 245543333 345555555 333345
Q ss_pred EEEe
Q 031156 90 HVID 93 (165)
Q Consensus 90 hV~D 93 (165)
.+..
T Consensus 97 r~E~ 100 (213)
T PF14533_consen 97 RIEE 100 (213)
T ss_dssp EEEE
T ss_pred eeec
Confidence 5543
No 90
>PRK06437 hypothetical protein; Provisional
Probab=73.57 E-value=19 Score=23.57 Aligned_cols=51 Identities=6% Similarity=0.101 Sum_probs=36.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
..++.++...||.+|=+. .|+++....+. . +|..+. .++.+++|++|-++-
T Consensus 12 ~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~-v--Ng~iv~---------~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 12 NKTIEIDHELTVNDIIKD----LGLDEEEYVVI-V--NGSPVL---------EDHNVKKEDDVLILE 62 (67)
T ss_pred ceEEEcCCCCcHHHHHHH----cCCCCccEEEE-E--CCEECC---------CceEcCCCCEEEEEe
Confidence 466788899999988666 48987666554 3 565431 567889999998765
No 91
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=68.53 E-value=14 Score=27.57 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=35.0
Q ss_pred ecC-CCCHHHHHHHHHH----HHCCCC------CceEEEEEcCCCC----eeeccC----------CCCCccCCCCCCCC
Q 031156 32 FPL-QMSVESVKDKLWR----KCGTSV------NSMSLELYDDTNT----KVAALT----------DNSRPLGFYSPLQG 86 (165)
Q Consensus 32 ~~~-~~TV~~LK~KLe~----~tGip~------~~q~L~l~~~~g~----~i~~l~----------dD~~~L~~ygv~dg 86 (165)
++. +.|+.+|++.+.. ..|++| +.|+|+.. +.|. .+..++ +++.+|.++||...
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~-AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTK-AHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEec-CCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 776 8999998876554 456655 34555332 2332 222222 44566777777777
Q ss_pred cEEEEE
Q 031156 87 YRLHVI 92 (165)
Q Consensus 87 ~~IhV~ 92 (165)
.+|-+.
T Consensus 101 TEiSfF 106 (122)
T PF10209_consen 101 TEISFF 106 (122)
T ss_pred ceeeee
Confidence 766543
No 92
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=68.00 E-value=23 Score=24.34 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=40.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
.....++...||+++=+. .|+|...-.+++. +|+... -+|-+++|.+|.|.-.
T Consensus 24 ~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~v--NG~~v~---------~~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 24 PFTHPFDGGATVKDVIES----LGVPHTEVGLILV--NGRPVD---------FDYRLKDGDRVAVYPV 76 (81)
T ss_pred ceEEecCCCCcHHHHHHH----cCCChHHeEEEEE--CCEECC---------CcccCCCCCEEEEEec
Confidence 456788999999887655 8999999998887 576432 1488999999998754
No 93
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=67.58 E-value=13 Score=24.57 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=35.7
Q ss_pred CceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 25 SFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 25 ~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
++...+.+.|+.|+.++=+.--.++|++++.=.|.. .++. .|-+.+...-|+-.|+.+.
T Consensus 6 ~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h---~~k~----ldlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 6 FRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKH---NNKP----LDLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp S-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEE---TTEE----ESSS-BHHHH---SS-EEE
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEE---CCEE----eccccceeecCCCCCCEEe
Confidence 347888999999999999999999999999777754 2443 2445667777888887764
No 94
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=65.73 E-value=5.5 Score=27.68 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=39.4
Q ss_pred EEecCCCCHHHHHHHHHHHH--CC-----CCCceEEEEEcCCCCeeecc--CCCCCccCCCCCCCCcEEEEEeCC
Q 031156 30 VRFPLQMSVESVKDKLWRKC--GT-----SVNSMSLELYDDTNTKVAAL--TDNSRPLGFYSPLQGYRLHVIDLD 95 (165)
Q Consensus 30 ~r~~~~~TV~~LK~KLe~~t--Gi-----p~~~q~L~l~~~~g~~i~~l--~dD~~~L~~ygv~dg~~IhV~D~~ 95 (165)
+.+++++|+.+|=+.|...- .+ ....-.|++..+ ..+... .+=+++|.+. +.+|..|+|.|..
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~p--p~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~~ 72 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSP--PSLEEATRPNLSKKLKEL-LSDGEEITVTDPT 72 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSS--HHHHHHTGGGGSSBTTTT-HHSSEEEEEEETT
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCC--HHHHHHhhhhhhhhHHHH-hcCCCEEEEECCC
Confidence 47899999999999987762 22 223334433211 011111 1226789999 9999999999964
No 95
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=64.73 E-value=12 Score=35.57 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=33.4
Q ss_pred CceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 25 SFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 25 ~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
..+++.-++++.|+..|..+|+.-||||...|.|.+-
T Consensus 324 ~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e 360 (732)
T KOG4250|consen 324 ATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFE 360 (732)
T ss_pred ceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeee
Confidence 3478899999999999999999999999999999653
No 96
>COG3462 Predicted membrane protein [Function unknown]
Probab=63.00 E-value=2.4 Score=31.11 Aligned_cols=17 Identities=47% Similarity=0.524 Sum_probs=15.3
Q ss_pred eeecCHHHhhcccchHH
Q 031156 113 KYTISEEEYSKRDGTFR 129 (165)
Q Consensus 113 ky~lsee~Y~kr~dtv~ 129 (165)
|=++|||||.++-+|++
T Consensus 100 kGEItEEEY~r~~~~ir 116 (117)
T COG3462 100 KGEITEEEYRRIIRTIR 116 (117)
T ss_pred cCCCCHHHHHHHHHHhc
Confidence 67999999999999876
No 97
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=62.46 E-value=31 Score=23.06 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=30.3
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCee
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKV 68 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i 68 (165)
|+|+..|....+...-+=+..-.|+.+|..--...+|+++ . ++ ++.+|-.|
T Consensus 4 VtI~~~~~~~~~~~~GKvi~lP~SleeLl~ia~~kfg~~~-~-~v--~~~dgaeI 54 (69)
T PF11834_consen 4 VTIFPNHPPEKGRRAGKVIWLPDSLEELLKIASEKFGFSA-T-KV--LNEDGAEI 54 (69)
T ss_pred EEEecCCCCcccCcCCEEEEcCccHHHHHHHHHHHhCCCc-e-EE--EcCCCCEE
Confidence 4444444433322223344555799999999999999973 3 22 34456543
No 98
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=62.40 E-value=55 Score=23.47 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=31.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCC-CceEEEEE
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSV-NSMSLELY 61 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~-~~q~L~l~ 61 (165)
...+..+++.|+++|=..|...+.+++ ...+|.++
T Consensus 14 f~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~ 49 (97)
T cd01775 14 FTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLK 49 (97)
T ss_pred EEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEE
Confidence 678899999999999999999999998 67788776
No 99
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=59.62 E-value=38 Score=27.85 Aligned_cols=49 Identities=6% Similarity=0.057 Sum_probs=33.2
Q ss_pred cEEEEEEecCCCC-ceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 13 SVLLRVTHSNLKS-FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 13 ~V~v~It~s~l~~-~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
.|.|.+....... ...+..++..+|..+|-+++....|++|...||.-.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~ 225 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTV 225 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE--
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEe
Confidence 4556666432222 268899999999999999999999999998887543
No 100
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=53.72 E-value=60 Score=21.18 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=35.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
..++.++...||.+|-+.| |+++..-.+. . +|..+ . .++.+++|++|-++-
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~-v--Ng~iv---~------~~~~l~~gD~Veii~ 65 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAK-V--NGKVA---L------EDDPVKDGDYVEVIP 65 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEE-E--CCEEC---C------CCcCcCCCCEEEEEc
Confidence 3567788999999998775 8887664443 3 45542 1 356689999988764
No 101
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=52.08 E-value=1e+02 Score=23.37 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=30.7
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCC
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV 53 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~ 53 (165)
.+.+.|.-.+. ...++.+++.+|+.+|...+....|++.
T Consensus 3 ~~~~~V~l~dg--~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 3 PRVLKVYLLDG--TTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred cEEEEEEecCC--CEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 34555554333 3778999999999999999999999964
No 102
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=51.46 E-value=61 Score=20.62 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=35.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
....++...||.+|...| |+++....+.+ +|..+... .-.++.+++|++|-++-
T Consensus 7 ~~~~~~~~~tv~~ll~~l----~~~~~~i~V~v---Ng~~v~~~-----~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 7 EPREVEEGATLAELLEEL----GLDPRGVAVAL---NGEIVPRS-----EWASTPLQDGDRIEIVT 60 (65)
T ss_pred eEEEcCCCCCHHHHHHHc----CCCCCcEEEEE---CCEEcCHH-----HcCceecCCCCEEEEEE
Confidence 456788899999998875 67777766543 46543211 12235689999988765
No 103
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=50.72 E-value=64 Score=22.55 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHH-CCCCCceEEEEEcCCCCeee
Q 031156 34 LQMSVESVKDKLWRKC-GTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 34 ~~~TV~~LK~KLe~~t-Gip~~~q~L~l~~~~g~~i~ 69 (165)
...|..+|++++..++ ++....-.|.+.|.+|..+.
T Consensus 25 ~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvt 61 (87)
T cd06402 25 VSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVA 61 (87)
T ss_pred CCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEe
Confidence 4567799999999998 55556778888898888654
No 104
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=50.21 E-value=19 Score=28.86 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=30.3
Q ss_pred ccEEEEEEecCCC---CceEEEEecCCCCHHHHHHHHHHHHCCCC---CceEEEEEc
Q 031156 12 ESVLLRVTHSNLK---SFSADVRFPLQMSVESVKDKLWRKCGTSV---NSMSLELYD 62 (165)
Q Consensus 12 ~~V~v~It~s~l~---~~~~e~r~~~~~TV~~LK~KLe~~tGip~---~~q~L~l~~ 62 (165)
..|.|.--+.... |.+.-+.+.++.|.+++|+||...+|++- +..++.+..
T Consensus 116 ~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~ 172 (213)
T PF14533_consen 116 KLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQ 172 (213)
T ss_dssp EEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEE
T ss_pred eEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEe
Confidence 3455544444333 22466888999999999999999999995 445676643
No 105
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=49.83 E-value=7.9 Score=21.67 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=11.8
Q ss_pred ecCHHHhhcccchHH
Q 031156 115 TISEEEYSKRDGTFR 129 (165)
Q Consensus 115 ~lsee~Y~kr~dtv~ 129 (165)
.||+|+|+++..-++
T Consensus 16 ~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 16 EISEEEYEQKKARLL 30 (31)
T ss_pred CCCHHHHHHHHHHHh
Confidence 589999998876554
No 106
>PF10016 DUF2259: Predicted secreted protein (DUF2259); InterPro: IPR018725 Members of this family of hypothetical bacterial proteins have no known function.
Probab=46.18 E-value=14 Score=29.57 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCCCCCCCc-----EEEEEeCCCCcccCCCcc
Q 031156 79 GFYSPLQGY-----RLHVIDLDPSSVTSGGWL 105 (165)
Q Consensus 79 ~~ygv~dg~-----~IhV~D~~p~s~~~~~~l 105 (165)
+.||++||+ .|+|+|+.-++.+..|-+
T Consensus 3 ~qyGvqDgSgfPyA~i~vvDv~~n~fv~~~~~ 34 (198)
T PF10016_consen 3 EQYGVQDGSGFPYAEIYVVDVATNRFVPGGPF 34 (198)
T ss_pred ceeeeecCCCCeeEEEEEEECCCCCCcCCceE
Confidence 578999885 899999998777766555
No 107
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=43.94 E-value=83 Score=19.96 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=34.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.++.++...||.+|...| |+++..-.+. . +|..+... .-..+-+++|++|-++-
T Consensus 6 ~~~~~~~~~tv~~ll~~l----~~~~~~v~v~-v--N~~iv~~~-----~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 6 EPVEVEDGLTLAALLESL----GLDPRRVAVA-V--NGEIVPRS-----EWDDTILKEGDRIEIVT 59 (64)
T ss_pred eEEEcCCCCcHHHHHHHc----CCCCCeEEEE-E--CCEEcCHH-----HcCceecCCCCEEEEEE
Confidence 356788889999998874 6777554443 3 45543211 12345789999887764
No 108
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=43.39 E-value=25 Score=28.93 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=51.4
Q ss_pred CCccEEEEEEecCCCCc----eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCC-CCeeeccCCCCCccCCCCCC
Q 031156 10 GDESVLLRVTHSNLKSF----SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDT-NTKVAALTDNSRPLGFYSPL 84 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~----~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~-g~~i~~l~dD~~~L~~ygv~ 84 (165)
....|-|++++=+.... ...+-++.+.+|++|-..|-.+.|.|++..-+ +|-.- -..+..+ +...++....++
T Consensus 65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~-lyEEi~~~~ie~i-~~~~t~~~~el~ 142 (249)
T PF12436_consen 65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLL-LYEEIKPNMIEPI-DPNQTFEKAELQ 142 (249)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EE-EEEEEETTEEEE---SSSBHHHTT--
T ss_pred CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceE-EEEEeccceeeEc-CCCCchhhcccC
Confidence 34567777775333221 13456899999999999999999999987544 55311 1234434 778899999999
Q ss_pred CCcEEEEEeCCC
Q 031156 85 QGYRLHVIDLDP 96 (165)
Q Consensus 85 dg~~IhV~D~~p 96 (165)
+|+.|-+.-..+
T Consensus 143 ~GdIi~fQ~~~~ 154 (249)
T PF12436_consen 143 DGDIICFQRAPS 154 (249)
T ss_dssp TTEEEEEEE--G
T ss_pred CCCEEEEEeccc
Confidence 999888777543
No 109
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=42.84 E-value=77 Score=21.22 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=31.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
...+.+-|++||.++=.++-..-|+.|+.=.|.+.
T Consensus 11 ~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 11 RTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLL 45 (72)
T ss_pred eEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 67789999999999999999999999999888765
No 110
>PRK07440 hypothetical protein; Provisional
Probab=42.56 E-value=97 Score=20.34 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=36.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
-.+.++...||.+|=.. .|+++...-+.+ +|..+. ...-.++-+++|++|.|+-
T Consensus 12 ~~~~~~~~~tl~~lL~~----l~~~~~~vav~~---N~~iv~-----r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 12 ETRTCSSGTSLPDLLQQ----LGFNPRLVAVEY---NGEILH-----RQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred EEEEcCCCCCHHHHHHH----cCCCCCeEEEEE---CCEEeC-----HHHcCceecCCCCEEEEEE
Confidence 35788889999987654 578877766665 455432 1223456689999998764
No 111
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.37 E-value=14 Score=30.03 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=18.7
Q ss_pred cccchHHHHHHHHh-ccCch-hhhhhcchhhHHhh
Q 031156 123 KRDGTFRKFKEKVL-SQNPS-AVENKLSNNYMEDL 155 (165)
Q Consensus 123 kr~dtv~~~kk~~k-~f~p~-~~~~~~~~~~~~~~ 155 (165)
.++..||.||.++. |-..- .+..+.+.+.++.+
T Consensus 103 ~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekA 137 (216)
T KOG4031|consen 103 DEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKA 137 (216)
T ss_pred cChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35789999999776 43332 33333344444443
No 112
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=40.87 E-value=36 Score=22.82 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=41.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHH---HCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 27 SADVRFPLQMSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~---tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
...++-++...+--+.+|--.- .|-|+..-. |+|.+|.. .|-++.+++||+..|.++.+...
T Consensus 7 Pv~VEANvnaPLh~v~akALe~sgNvgQP~ENWE--lkDe~G~v----lD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 7 PVQVEANVNAPLHPVRAKALEQSGNVGQPPENWE--LKDESGQV----LDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred ceeeecCCCCcchHHHHHHHhhccccCCCcccce--eeccCCcE----eeccchhhhccccccceEEEEee
Confidence 3445555555555555553333 456666654 57878873 46678999999999999988764
No 113
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=40.39 E-value=65 Score=22.38 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=31.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
....++++..|=.++|+-|+.++|+++...+-..+
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 47789999999999999999999999988886655
No 114
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=40.10 E-value=88 Score=20.64 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=33.3
Q ss_pred EEEEecCC-CCHHHHHHHHHHHHC-CCC--CceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 28 ADVRFPLQ-MSVESVKDKLWRKCG-TSV--NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 28 ~e~r~~~~-~TV~~LK~KLe~~tG-ip~--~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.++.++.. .||.+|...|....+ +-. ....+ +. +++.+ -.+..+++|++|.+.-
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v-~v--n~~~v---------~~~~~l~dgDevai~P 75 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMV-AV--NEEYV---------TDDALLNEGDEVAFIP 75 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEE-EE--CCEEc---------CCCcCcCCCCEEEEeC
Confidence 46778876 899999999988764 000 00111 11 23321 1357899999998764
No 115
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=39.18 E-value=1.3e+02 Score=21.09 Aligned_cols=31 Identities=19% Similarity=0.071 Sum_probs=27.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceE
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMS 57 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~ 57 (165)
+-.+.++..+|++++...|....++.++.=.
T Consensus 14 sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W 44 (85)
T cd01787 14 SKSLEVDERMTARDVCQLLVDKNHCQDDSSW 44 (85)
T ss_pred eeEEEEcCCCcHHHHHHHHHHHhCCCCCCCe
Confidence 6678999999999999999999999876644
No 116
>smart00455 RBD Raf-like Ras-binding domain.
Probab=38.92 E-value=1.1e+02 Score=20.10 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=32.0
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
....+.+-|+.||.++=.++-..-|+.|..-.|.+.
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~ 45 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLR 45 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc
Confidence 467788999999999999999999999999888654
No 117
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=38.15 E-value=1.4e+02 Score=20.93 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=30.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCC-CCceEEEEEc
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTS-VNSMSLELYD 62 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip-~~~q~L~l~~ 62 (165)
+-++-+.|.+|+.+|+..+...++|. |+.-.|.++-
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~v 51 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFV 51 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEE
Confidence 45678899999999999999999997 7777887774
No 118
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=37.60 E-value=1.3e+02 Score=20.41 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=36.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCcc
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPL 78 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L 78 (165)
...+.+-|++||.++=.|+-..=|+.+..=.+.+. +++....++-|..+|
T Consensus 11 ~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~--g~~k~l~~~qD~~~L 60 (73)
T cd01817 11 TTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLV--GGDKPLVLDQDSSVL 60 (73)
T ss_pred eEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEe--cCCcccccCCcccee
Confidence 56688889999999999999999999999887665 333222244454444
No 119
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=37.33 E-value=69 Score=21.53 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=35.3
Q ss_pred ecCCCCHHHHHHHHHHHHCCC-CCceEEEEEcCCCCeeeccCCCCCccCCC-CCCCCcEEEEEe
Q 031156 32 FPLQMSVESVKDKLWRKCGTS-VNSMSLELYDDTNTKVAALTDNSRPLGFY-SPLQGYRLHVID 93 (165)
Q Consensus 32 ~~~~~TV~~LK~KLe~~tGip-~~~q~L~l~~~~g~~i~~l~dD~~~L~~y-gv~dg~~IhV~D 93 (165)
++++.+|.+|++-|....-+- -.+-.|.+ .|.. | ++...|+++ |+++|+.|.|+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~---~g~~---L-~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEH---NGQR---L-DDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEE---CCCc---c-CCchhhhhhhCCCCCcEEEEEe
Confidence 467889999999877664422 22334433 3543 3 555566665 588888888885
No 120
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=36.54 E-value=1.3e+02 Score=20.10 Aligned_cols=42 Identities=12% Similarity=0.036 Sum_probs=31.7
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCC
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN 54 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~ 54 (165)
.+++|+... .-.+....+.+++++|..++-..+-..+|++.+
T Consensus 3 ~~lrV~~~~-~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 3 FVLRVYVDD-LPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred eEEEEeccc-CCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 356666652 112236789999999999999999999999864
No 121
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=35.60 E-value=1.2e+02 Score=19.19 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=35.6
Q ss_pred EEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.+.++...||.+|=.. .|+++....+.+ +|..+..- .-.+..+++|++|-++-
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~v---Ng~iv~r~-----~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEV---NGEIVPRS-----QHASTALREGDVVEIVH 61 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEE---CCeEeCHH-----HcCcccCCCCCEEEEEE
Confidence 4678888999888665 588887777654 45433211 12345689999998764
No 122
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=35.58 E-value=2.1e+02 Score=25.96 Aligned_cols=69 Identities=10% Similarity=0.001 Sum_probs=48.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEc-CCCC-eeeccCCCCCccCCCCCCCCcEEEEEeCCC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD-DTNT-KVAALTDNSRPLGFYSPLQGYRLHVIDLDP 96 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~-~~g~-~i~~l~dD~~~L~~ygv~dg~~IhV~D~~p 96 (165)
...+++.++.+++-|-.||-..+-...+--.+.++. ++|+ .+..+ ..++++.+.|++.|.-+.+.-++-
T Consensus 11 ~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~-l~dqt~~dlGL~hGqmLyl~ysd~ 81 (571)
T COG5100 11 QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSL-LKDQTPDDLGLRHGQMLYLEYSDI 81 (571)
T ss_pred ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeec-ccccChhhhccccCcEEEEEeccc
Confidence 456788999999999999877655443333444554 4444 22223 356789999999999999887553
No 123
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=35.27 E-value=1e+02 Score=20.40 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=33.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHH-CCCCC-ceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 27 SADVRFPLQMSVESVKDKLWRKC-GTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~t-Gip~~-~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
..++.++...|+.+|.+.|.... +.... ....... +|+.+ + .++.+++|++|-++-
T Consensus 20 ~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vav--N~~~v----~-----~~~~l~dgDeVai~P 77 (82)
T PLN02799 20 DMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLAL--NEEYT----T-----ESAALKDGDELAIIP 77 (82)
T ss_pred eEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEE--CCEEc----C-----CCcCcCCCCEEEEeC
Confidence 45677888999999999886543 11100 0011122 34321 1 446789999998875
No 124
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=35.23 E-value=1.3e+02 Score=19.51 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=43.5
Q ss_pred CceEEEEecCCCCHHHHHHHHHHHHCCCCCce-EEEE-EcCCCCeeeccCCCCCccCCCCCC--CCcEEEE
Q 031156 25 SFSADVRFPLQMSVESVKDKLWRKCGTSVNSM-SLEL-YDDTNTKVAALTDNSRPLGFYSPL--QGYRLHV 91 (165)
Q Consensus 25 ~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q-~L~l-~~~~g~~i~~l~dD~~~L~~ygv~--dg~~IhV 91 (165)
+...++.++++.|+.+|=+.|....|+.-... -|.+ .+.+|.. .+| +.+++|..+... ...+++.
T Consensus 6 ~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~-~wL-~~~k~l~~q~~~~~~~~~l~f 74 (80)
T PF09379_consen 6 GTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEH-HWL-DLDKKLKKQLKKNNPPFTLYF 74 (80)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSE-EEE--SSSBGGGSTBTSSSSEEEEE
T ss_pred CCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcc-eec-cCcccHHHHcCCCCCCEEEEE
Confidence 34678899999999999999999999985444 4655 3444432 123 566777777666 3334443
No 125
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=35.14 E-value=15 Score=30.25 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=18.7
Q ss_pred eecCHHHhhcccchHHHHHHHHhccCch
Q 031156 114 YTISEEEYSKRDGTFRKFKEKVLSQNPS 141 (165)
Q Consensus 114 y~lsee~Y~kr~dtv~~~kk~~k~f~p~ 141 (165)
==|+.|||++|+.+||. -+||+
T Consensus 158 ~PmTkEEyearQSvIRr------VvDpE 179 (225)
T PF10500_consen 158 APMTKEEYEARQSVIRR------VVDPE 179 (225)
T ss_pred CCCCHHHHHHHHhhhee------eecCC
Confidence 35999999999998874 68998
No 126
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=34.84 E-value=1.2e+02 Score=21.79 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=39.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEc---CCCC-eeeccCCCCCcc
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD---DTNT-KVAALTDNSRPL 78 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~---~~g~-~i~~l~dD~~~L 78 (165)
.--++++..+|..++-+-|-..+.|.-+-+++.||- ..|. ....|.+++.+|
T Consensus 18 ~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kFALYe~~h~~ge~~~rkL~d~E~PL 73 (96)
T cd01778 18 AKHLHISSKTTVREVIEALLKKFLVVDNPRKFALFEREHRTGQVYLRKLSDDECPL 73 (96)
T ss_pred eeEEEEecCCcHHHHHHHHHHhheeccCCcceEEEEEEecCCcEEEEECCCCCCCe
Confidence 456889999999999999999999998888887772 3454 234577777765
No 127
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=34.31 E-value=1.2e+02 Score=20.56 Aligned_cols=19 Identities=5% Similarity=0.101 Sum_probs=16.3
Q ss_pred ecCCCCHHHHHHHHHHHHC
Q 031156 32 FPLQMSVESVKDKLWRKCG 50 (165)
Q Consensus 32 ~~~~~TV~~LK~KLe~~tG 50 (165)
.++++||++|+..|...+-
T Consensus 9 t~~~~tl~~L~~eI~~~f~ 27 (73)
T PF10407_consen 9 TDPNNTLSQLKEEIEERFK 27 (73)
T ss_pred eCCCCcHHHHHHHHHHHHH
Confidence 5789999999999888765
No 128
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=33.77 E-value=1.5e+02 Score=20.08 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=23.3
Q ss_pred cCCCCHHHHHHHHHHHHCCCCCceEEE
Q 031156 33 PLQMSVESVKDKLWRKCGTSVNSMSLE 59 (165)
Q Consensus 33 ~~~~TV~~LK~KLe~~tGip~~~q~L~ 59 (165)
....++.+|++.|+.++|++..+-.++
T Consensus 47 ~~G~~i~~L~~~L~k~~~~~~~~i~v~ 73 (81)
T cd02413 47 EKGRRIRELTSLVQKRFNFPEGSVELY 73 (81)
T ss_pred CCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 467899999999999999988887764
No 129
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=32.93 E-value=1.8e+02 Score=20.75 Aligned_cols=71 Identities=13% Similarity=0.242 Sum_probs=51.6
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
.|.+.|..-..+ ..-..+-.+.|..-|=.-.....|-..+.-|+ |+ +|.-| +-+++-++++..++..|.++
T Consensus 24 hinLkvv~qd~t--elfFkiKktT~f~klm~af~~rqGK~m~slRf-L~--dG~rI----~~dqTP~dldmEdnd~iEav 94 (103)
T COG5227 24 HINLKVVDQDGT--ELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRF-LF--DGKRI----DLDQTPGDLDMEDNDEIEAV 94 (103)
T ss_pred ccceEEecCCCC--EEEEEEeccchHHHHHHHHHHHhCcCcceeEE-EE--cceec----CCCCChhhcCCccchHHHHH
Confidence 566666633322 45567778889988888889999999999998 55 57542 44677788888888877554
No 130
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=31.98 E-value=58 Score=24.26 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=33.4
Q ss_pred CccEEEEEEecCCCCceEEE-EecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 11 DESVLLRVTHSNLKSFSADV-RFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~-r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
...|.|.|-...-+....-. =+|.++||+++..-|....+++|.. +.|+
T Consensus 25 PdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k--~flf 74 (121)
T PTZ00380 25 PGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKK--VTLA 74 (121)
T ss_pred CCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhH--EEEE
Confidence 34677777543222211122 2799999999999999999999987 4444
No 131
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=31.34 E-value=1.4e+02 Score=18.88 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=31.7
Q ss_pred EEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 30 VRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 30 ~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+.++ ..|+.+|-..| |+++....+.+ ++..+. .....+..+++|++|-++-
T Consensus 10 ~~~~-~~tl~~Ll~~l----~~~~~~vavav---N~~iv~-----~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 10 LQTE-ATTLALLLAEL----DYEGNWLATAV---NGELVH-----KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EEcC-cCcHHHHHHHc----CCCCCeEEEEE---CCEEcC-----HHHcCccccCCCCEEEEEE
Confidence 4453 46999888765 77775444443 354322 1233466789999998765
No 132
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=31.25 E-value=1.4e+02 Score=21.06 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=33.0
Q ss_pred EEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 30 VRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 30 ~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
..++-..+++.||..|+++.|++-+.-.+.|. +.. .+++++|-+-+|+-.-.+
T Consensus 7 q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQ---D~~----L~~~k~L~dQcVqgeGlV 59 (88)
T PF11620_consen 7 QHMDIREPLSTLKKLLERRLGISLSDYEFWLQ---DIQ----LEPHKSLVDQCVQGEGLV 59 (88)
T ss_dssp EEEESSSBGGGHHHHSHHHH-S--SS-EEEET---TEE------TTSBTTTSS----SEE
T ss_pred EEEecCCcHHHHHHHHHHhhCCCcCCCeEEec---cce----ecCCccHHHhhccccCEE
Confidence 45667788999999999999999988888774 221 477888988888844333
No 133
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=30.75 E-value=1.8e+02 Score=20.08 Aligned_cols=35 Identities=9% Similarity=-0.072 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeee
Q 031156 35 QMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 35 ~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~ 69 (165)
..+-.++...|+.+..++.-.-.|-+.|.+|..+.
T Consensus 21 ~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gDLLP 55 (80)
T cd06403 21 PGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGDLLP 55 (80)
T ss_pred CcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCCEec
Confidence 36788999999999999988888888888887554
No 134
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=30.18 E-value=2e+02 Score=21.98 Aligned_cols=46 Identities=9% Similarity=0.152 Sum_probs=29.1
Q ss_pred cEEEEEEecCC-CCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEE
Q 031156 13 SVLLRVTHSNL-KSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSL 58 (165)
Q Consensus 13 ~V~v~It~s~l-~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L 58 (165)
.++|.|+=... ...+..+.++.++|+.+|-.-|...+|-....+--
T Consensus 4 ~y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~~~HL~~ 50 (179)
T PF07929_consen 4 VYQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWDDDHLYE 50 (179)
T ss_dssp EEEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT----S-EE
T ss_pred EEEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcCCCEeEE
Confidence 45555553322 23478899999999999999999999998766643
No 135
>PRK01777 hypothetical protein; Validated
Probab=29.97 E-value=2e+02 Score=20.24 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=42.2
Q ss_pred cEEEEEEecCCCC-ceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE----cCCCCeeeccCCCCCccCCCCCCCCc
Q 031156 13 SVLLRVTHSNLKS-FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY----DDTNTKVAALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 13 ~V~v~It~s~l~~-~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~----~~~g~~i~~l~dD~~~L~~ygv~dg~ 87 (165)
.++|.|..+.-.. ...++.++.+.||.++=.. .||+...-.|.+. .-.|+.. -.+..+++|.
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v---------~~d~~L~dGD 69 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPA---------KLTDVLRDGD 69 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeEC---------CCCCcCCCCC
Confidence 5677777653332 2577889999999987666 5887773322110 0024421 1245789999
Q ss_pred EEEEEe
Q 031156 88 RLHVID 93 (165)
Q Consensus 88 ~IhV~D 93 (165)
+|-+.-
T Consensus 70 RVeIyr 75 (95)
T PRK01777 70 RVEIYR 75 (95)
T ss_pred EEEEec
Confidence 998765
No 136
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=29.31 E-value=88 Score=22.48 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=31.8
Q ss_pred ccEEEEEEecCCCCc----eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEc
Q 031156 12 ESVLLRVTHSNLKSF----SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 12 ~~V~v~It~s~l~~~----~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
..|.|.|--..-+.. ..-.=++.++||+++..-|.....+++. +.|.++-
T Consensus 15 ~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~-~alfl~V 68 (104)
T PF02991_consen 15 DKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPE-QALFLFV 68 (104)
T ss_dssp TEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TT-S-EEEEB
T ss_pred CccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCC-ceEEEEE
Confidence 466676653322211 1123479999999999999999999986 6887774
No 137
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=29.05 E-value=86 Score=21.23 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=26.0
Q ss_pred eEEEEec-CCCCHHHHHHHHHHHHCC-CCCceEEEEEcCC
Q 031156 27 SADVRFP-LQMSVESVKDKLWRKCGT-SVNSMSLELYDDT 64 (165)
Q Consensus 27 ~~e~r~~-~~~TV~~LK~KLe~~tGi-p~~~q~L~l~~~~ 64 (165)
...+.|+ .+++|.+||..|-...++ ....-.|.+++..
T Consensus 11 ~~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na~ 50 (74)
T PF08783_consen 11 YDTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNAQ 50 (74)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEESS
T ss_pred ccEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECCC
Confidence 3455665 589999999999777766 4445577777643
No 138
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=28.70 E-value=2.3e+02 Score=23.57 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=31.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
..-++++++...+-+-.+|..+.|+|..+||+..+
T Consensus 24 a~ViK~s~ti~~E~~~~~La~~LgVpiPq~rvi~~ 58 (238)
T cd05124 24 AIVVKSSPNIASEYFLSKLAKILGLPIPQMRVLEW 58 (238)
T ss_pred EEEEEcCccHHHHHHHHHHHHHhCCCCCceeeeec
Confidence 67889998888888999999999999999999655
No 139
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=28.36 E-value=1.4e+02 Score=29.25 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=42.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE-cCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY-DDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~-~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+.-+.++..++++.+|+.||+..|++.+.-+|.=. +.+|.... ..++.+|.. .-+|++|.|...
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S--~~~NetLs~--~~~~~~iTI~LG 942 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEAS--FMDNETLSG--AFQSCFITIKLG 942 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhh--hccchhhhh--hcccceEEEEec
Confidence 56678899999999999999999999999987432 23333322 123445543 334455555443
No 140
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=27.60 E-value=42 Score=19.63 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=14.5
Q ss_pred eeecCHHHhhcccchHHHHHHHHh
Q 031156 113 KYTISEEEYSKRDGTFRKFKEKVL 136 (165)
Q Consensus 113 ky~lsee~Y~kr~dtv~~~kk~~k 136 (165)
-|.||-++|.+.+ .||+.+.
T Consensus 10 vFgm~~~eF~~lP----~WKq~~l 29 (36)
T PF02209_consen 10 VFGMSREEFYKLP----KWKQNNL 29 (36)
T ss_dssp HHSS-HHHHHHS-----HHHHHHH
T ss_pred HHCCCHHHHHHCh----HHHHHHH
Confidence 5889999998765 7988664
No 141
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=27.51 E-value=31 Score=23.75 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=18.6
Q ss_pred eecCHHHhhcccchHHHHHHHHh
Q 031156 114 YTISEEEYSKRDGTFRKFKEKVL 136 (165)
Q Consensus 114 y~lsee~Y~kr~dtv~~~kk~~k 136 (165)
=+||+|+|+.+.+-++.=....+
T Consensus 47 GEIseeEf~~~E~eLL~rL~~~~ 69 (79)
T PF05120_consen 47 GEISEEEFERREDELLDRLEEAR 69 (79)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999988665443
No 142
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=26.95 E-value=47 Score=19.29 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=11.0
Q ss_pred cCCCCHHHHHHHHHHH
Q 031156 33 PLQMSVESVKDKLWRK 48 (165)
Q Consensus 33 ~~~~TV~~LK~KLe~~ 48 (165)
+.++||.+||..|...
T Consensus 1 p~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEH 16 (35)
T ss_dssp STT--SHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHc
Confidence 3578999999988764
No 143
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.93 E-value=73 Score=26.03 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=29.0
Q ss_pred EEec-CCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCC
Q 031156 30 VRFP-LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT 66 (165)
Q Consensus 30 ~r~~-~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~ 66 (165)
-.|+ -+.-+.+.+..|...||||.++|.+.+...+|.
T Consensus 143 ~~y~~~S~DW~Em~~Ais~atgi~~~~mi~w~ign~G~ 180 (217)
T PF07423_consen 143 MTYDSGSVDWNEMLKAISYATGISEDNMIVWFIGNNGS 180 (217)
T ss_pred ccccCCCcCHHHHHHHHHHhhCCChhheEEEhhhcCCc
Confidence 3444 356789999999999999999999987655554
No 144
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=26.15 E-value=1.7e+02 Score=18.24 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=31.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.++.++...||.+|-+.| |+++ ...+. . +|..+..- .-.+.-+++|++|.|+-
T Consensus 8 ~~~~~~~~~tl~~ll~~l----~~~~-~~~v~-v--N~~~v~~~-----~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 8 QTLSLPDGATVADALAAY----GARP-PFAVA-V--NGDFVART-----QHAARALAAGDRLDLVQ 60 (65)
T ss_pred EEEECCCCCcHHHHHHhh----CCCC-CeEEE-E--CCEEcCch-----hcccccCCCCCEEEEEe
Confidence 456788899999998875 5543 23332 2 45433211 11234588999998874
No 145
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=26.06 E-value=1.3e+02 Score=20.93 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=30.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
.....+++..|=.++|+-|+.++|+++...+-...
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 56788999999999999999999999988875443
No 146
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=26.02 E-value=1.3e+02 Score=26.20 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=55.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEc---CCCC-eeeccCCCCCccCC---CCCCCC-cEEEEEeCCCCcc
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD---DTNT-KVAALTDNSRPLGF---YSPLQG-YRLHVIDLDPSSV 99 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~---~~g~-~i~~l~dD~~~L~~---ygv~dg-~~IhV~D~~p~s~ 99 (165)
..++++.++|..++=..|-..+-|.-+-|++.||- .+|+ .+..|.+++.+|-. -|...+ ..|.+.+.+.
T Consensus 216 k~vrInStttt~eVI~~LLkKF~Ved~P~kFALy~~~~~geqv~~~kLkd~d~PL~~RLLqGP~ek~~~~vLmEnD~--- 292 (348)
T KOG4239|consen 216 KNVRINSTTTTREVIKLLLKKFRVEDNPQKFALYERHESGEQVKLTKLKDDDYPLILRLLQGPSEKILSFVLMENDT--- 292 (348)
T ss_pred eeEEecccccHHHHHHHHHHHHeecCCHhheeeeEEeecCchhhheecccccccHHHHHHhCcchhhhheeEeccCc---
Confidence 46899999999999999999999998888877663 2333 23346666655422 233333 5666666551
Q ss_pred cCCCccccCCcceeeecCHH
Q 031156 100 TSGGWLEDTSLVEKYTISEE 119 (165)
Q Consensus 100 ~~~~~l~d~s~veky~lsee 119 (165)
|+. + +.+|+|++=
T Consensus 293 ---gEV---~-wdaFemPeL 305 (348)
T KOG4239|consen 293 ---GEV---L-WDAFEMPEL 305 (348)
T ss_pred ---cee---e-eeeeccHHH
Confidence 333 2 669999986
No 147
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=25.08 E-value=1.4e+02 Score=20.39 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCe
Q 031156 35 QMSVESVKDKLWRKCGTSVNSMSLELYDDTNTK 67 (165)
Q Consensus 35 ~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~ 67 (165)
..++.+|+.|--..++++...-+|.|. .+|..
T Consensus 20 A~sL~eL~~K~~~~l~~~~~~~~lvL~-eDGT~ 51 (78)
T PF02017_consen 20 ASSLEELLEKACDKLQLPEEPVRLVLE-EDGTE 51 (78)
T ss_dssp ESSHHHHHHHHHHHHT-SSSTCEEEET-TTTCB
T ss_pred cCCHHHHHHHHHHHhCCCCcCcEEEEe-CCCcE
Confidence 369999999999999999888888765 57764
No 148
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=24.65 E-value=1.2e+02 Score=21.51 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCCCceEEEEEc
Q 031156 39 ESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 39 ~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
..|.+.|+..+||||+..-+.+.+
T Consensus 79 ~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 79 AAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHhCcCcccEEEEEEE
Confidence 467888999999999999887764
No 149
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=24.56 E-value=1.1e+02 Score=21.08 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=18.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHHC
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCG 50 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tG 50 (165)
...+++.+.||.++|+.|-....
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHH
Confidence 35688899999999999876644
No 150
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=24.54 E-value=1.1e+02 Score=20.82 Aligned_cols=23 Identities=17% Similarity=0.531 Sum_probs=17.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHHC
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCG 50 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tG 50 (165)
..++++.+.|+.++|+.|-....
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 35788999999999998876544
No 151
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=24.29 E-value=2.5e+02 Score=19.49 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCC---eeeccCC--CCCcc--CCCCCCCCcEEEEEe
Q 031156 34 LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT---KVAALTD--NSRPL--GFYSPLQGYRLHVID 93 (165)
Q Consensus 34 ~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~---~i~~l~d--D~~~L--~~ygv~dg~~IhV~D 93 (165)
...||.+|=..|.... |+...+| +..+|. .+..+-+ |-+.| .++.+++|++|.+.-
T Consensus 27 ~~~tV~dll~~L~~~~--~~~~~~l--f~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 27 KPVTVGDLLDYVASNL--LEERPDL--FIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred CCCcHHHHHHHHHHhC--chhhhhh--EecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 5679999988887766 3444444 222332 1212223 33445 468899999998875
No 152
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=23.82 E-value=2e+02 Score=18.28 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=34.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
..+.++...||.+|=.. .|+++..-.+.+ ++..+. . .....+ +++|++|-++-
T Consensus 8 ~~~~~~~~~tl~~ll~~----l~~~~~~vav~~---N~~iv~---r--~~~~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 8 EQVEVDEQTTVAALLDS----LGFPEKGIAVAV---DWSVLP---R--SDWATK-LRDGARLEVVT 60 (65)
T ss_pred EEEEcCCCCcHHHHHHH----cCCCCCcEEEEE---CCcCcC---h--hHhhhh-cCCCCEEEEEe
Confidence 35678888998877555 588887777765 344321 1 112234 89999998764
No 153
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=23.66 E-value=2.2e+02 Score=18.71 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=34.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCce--EEEEEcCCCCeeeccCCCCCccC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSM--SLELYDDTNTKVAALTDNSRPLG 79 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q--~L~l~~~~g~~i~~l~dD~~~L~ 79 (165)
...+.++++.|..++-..+-..+|+..+.. .|.-.-.++..-..|.+++..|.
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~ 68 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQ 68 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHH
Confidence 567899999999999999999999993333 34322222112122455555543
No 154
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=23.63 E-value=2.1e+02 Score=19.68 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCe
Q 031156 34 LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTK 67 (165)
Q Consensus 34 ~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~ 67 (165)
...++.+|+.|.-..++++...-+|.|+ .+|..
T Consensus 19 ~A~sL~EL~~K~~~~l~~~~~~~~lvL~-eDGT~ 51 (78)
T cd06539 19 MASSLQELISKTLDALVITSGLVTLVLE-EDGTV 51 (78)
T ss_pred EecCHHHHHHHHHHHhCCCCCCcEEEEe-CCCCE
Confidence 4568999999999999998877788766 56764
No 155
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=22.86 E-value=2.2e+02 Score=19.36 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCe
Q 031156 34 LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTK 67 (165)
Q Consensus 34 ~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~ 67 (165)
...++.+|+.|.-..++++...-+|.|. .+|..
T Consensus 17 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~-eDGT~ 49 (74)
T smart00266 17 AASSLEELLSKVCDKLALPDSPVTLVLE-EDGTI 49 (74)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEe-cCCcE
Confidence 4569999999999999999877788665 46764
No 156
>PF06372 Gemin6: Gemin6 protein; InterPro: IPR009422 This family consists of several mammalian Gemin6 proteins. The exact function of Gemin6 is unknown but it has been found to form part of the Survival of motor neuron complex. The SMN complex plays a key role in the biogenesis of spliceosomal small nuclear ribonucleoproteins (snRNPs) and other ribonucleoprotein particles [].; GO: 0000245 spliceosome assembly, 0005634 nucleus; PDB: 1Y96_A.
Probab=22.45 E-value=29 Score=27.24 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=0.0
Q ss_pred cCHHHhhcccchHHHHHHHHh-ccCc
Q 031156 116 ISEEEYSKRDGTFRKFKEKVL-SQNP 140 (165)
Q Consensus 116 lsee~Y~kr~dtv~~~kk~~k-~f~p 140 (165)
.|.|+-.+|.+.|+.|.++|. .+.+
T Consensus 93 ~s~edl~~RK~~l~~wL~~N~ipV~E 118 (166)
T PF06372_consen 93 YSPEDLEKRKESLKQWLEKNRIPVTE 118 (166)
T ss_dssp --------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHCCCceEe
Confidence 467899999999999999997 4444
No 157
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=22.25 E-value=2.3e+02 Score=18.27 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=34.2
Q ss_pred EEEecCC-CCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 29 DVRFPLQ-MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 29 e~r~~~~-~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.+.++.. .||.+|=.. .|+++...-+.+ +|..+.. ..-..+-+++|++|.++-
T Consensus 9 ~~~~~~~~~tv~~lL~~----l~~~~~~vav~v---N~~iv~r-----~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 9 QIEVPESVKTVAELLTH----LELDNKIVVVER---NKDILQK-----DDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEEcCCCcccHHHHHHH----cCCCCCeEEEEE---CCEEeCH-----HHcCceecCCCCEEEEEE
Confidence 4567766 688877654 688887766654 4554321 123455689999988764
No 158
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=22.22 E-value=2.5e+02 Score=18.64 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=16.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHH
Q 031156 28 ADVRFPLQMSVESVKDKLWRKC 49 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~t 49 (165)
.++.++ ..||.+|.+.|....
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~~~ 38 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMARY 38 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHHHC
Confidence 456666 899999999997665
No 159
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=21.66 E-value=1.5e+02 Score=19.45 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeCC
Q 031156 48 KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 95 (165)
Q Consensus 48 ~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~ 95 (165)
+..|.+..+.|.|- +|+.+. |..+ ...=++++|+.++|.-..
T Consensus 9 I~~id~~~~titLd--DGksy~-lp~e---f~~~~L~~G~kV~V~yd~ 50 (61)
T PF07076_consen 9 IKSIDPETMTITLD--DGKSYK-LPEE---FDFDGLKPGMKVVVFYDE 50 (61)
T ss_pred EEEEcCCceEEEec--CCCEEE-CCCc---ccccccCCCCEEEEEEEc
Confidence 45678888898875 677443 2111 123479999998887643
No 160
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=21.38 E-value=2e+02 Score=20.89 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=33.8
Q ss_pred ccEEEEEEecCCCCc----eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEc
Q 031156 12 ESVLLRVTHSNLKSF----SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 12 ~~V~v~It~s~l~~~----~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
..|.|.|....-+.. ..-.-++.++||+++..-|....+++++. .|.|+-
T Consensus 23 ~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~-slfl~V 76 (112)
T cd01611 23 DRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEK-ALFLFV 76 (112)
T ss_pred CceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccc-eEEEEE
Confidence 466666653221111 12234899999999999999999988764 676764
No 161
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=21.21 E-value=2.4e+02 Score=19.34 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCe
Q 031156 34 LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTK 67 (165)
Q Consensus 34 ~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~ 67 (165)
...++.+|+.|.-..+++|...-+|.|. .+|..
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~lvL~-eDGTe 51 (78)
T cd01615 19 AASSLEELLSKACEKLKLPSAPVTLVLE-EDGTE 51 (78)
T ss_pred EcCCHHHHHHHHHHHcCCCCCCeEEEEe-CCCcE
Confidence 4569999999999999998767677665 46764
No 162
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.12 E-value=1.9e+02 Score=19.58 Aligned_cols=35 Identities=6% Similarity=0.011 Sum_probs=30.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
.....+++..|=.++|.-+|.++|+.+...+-...
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~ 50 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLIT 50 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEc
Confidence 46788999999999999999999999998875433
No 163
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=21.10 E-value=58 Score=25.78 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.7
Q ss_pred CHHHhhcccchHHHHHHHHh------ccCch
Q 031156 117 SEEEYSKRDGTFRKFKEKVL------SQNPS 141 (165)
Q Consensus 117 see~Y~kr~dtv~~~kk~~k------~f~p~ 141 (165)
+.+||.+|-++++.|-++.. .++|+
T Consensus 36 P~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~ 66 (176)
T PF02677_consen 36 PYEEYERRLEELKRFAEKLGIPLIEGDYDPE 66 (176)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEecCCCHH
Confidence 56899999999999988776 66776
No 164
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=21.07 E-value=2e+02 Score=19.79 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=27.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEc
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
.-..++.+.|++++..-|....++++. +.|.++-
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~-~slflyv 51 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKAS-DSLFLYI 51 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCcc-CeEEEEE
Confidence 345689999999999999999999876 4666664
No 165
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=20.66 E-value=3.2e+02 Score=24.29 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=47.3
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCC-ceEEEEEcCCCCeeeccCCCCCccCCCCCCCC
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~-~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg 86 (165)
+.-.|.|.-.+.+ .....|+.+-||.+++.-|...-.-.+. .+.|.. +=+...|.|++.||..-|+.+-
T Consensus 304 PtTsIQIRLanG~--RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~----~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 304 PTTSIQIRLANGT--RLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMM----AFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred CcceEEEEecCCc--eeeeeccCcccHHHHHHHHHhcCCCCcCCceeeee----cCCCcccCCcchhHHhccchhh
Confidence 3556777755443 6778899999999999998876544433 566643 2122236789999998888654
No 166
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=20.44 E-value=1.8e+02 Score=24.68 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=23.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
..-+++++++.-+-+...|+.+.|+|+.+||+.=+
T Consensus 55 avViK~s~t~~~E~~~s~La~~Lgv~~P~~Rii~~ 89 (275)
T PF09192_consen 55 AVVIKFSSTIQQEVFASELARWLGVPTPQMRIIES 89 (275)
T ss_dssp EEEEE--TTHHHHHHHHHHHHHCT-----EEEEES
T ss_pred EEEEecCCchHHHHHHHHHHHHhCCCCCceeeeec
Confidence 56788888877888999999999999999999633
No 167
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=20.41 E-value=3e+02 Score=18.87 Aligned_cols=54 Identities=7% Similarity=0.076 Sum_probs=36.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
-.+.++...||.+|=.. .|+++..--+.+ +|..+. ...-..+-+++|++|.|+-
T Consensus 26 ~~~~~~~~~tl~~LL~~----l~~~~~~vAVev---Ng~iVp-----r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 26 QSIQVDISSSLAQIIAQ----LSLPELGCVFAI---NNQVVP-----RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred eEEEcCCCCcHHHHHHH----cCCCCceEEEEE---CCEEeC-----HHHcCcccCCCCCEEEEEE
Confidence 35678889999887665 488876666654 465442 1233456689999998874
Done!