Query 031156
Match_columns 165
No_of_seqs 170 out of 536
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:54:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t0y_A Tubulin folding cofacto 100.0 8.7E-38 3E-42 231.1 13.0 118 12-134 5-122 (122)
2 4b6w_A Tubulin-specific chaper 99.9 4.1E-27 1.4E-31 164.4 10.9 86 12-97 1-86 (86)
3 2kj6_A Tubulin folding cofacto 99.9 3.2E-24 1.1E-28 152.9 10.7 90 7-96 8-97 (97)
4 2kjr_A CG11242; UBL, ubiquitin 99.9 7.2E-22 2.5E-26 140.1 10.5 86 7-93 9-94 (95)
5 1v6e_A Cytoskeleton-associated 99.9 1.9E-21 6.6E-26 137.2 11.8 90 11-101 5-94 (95)
6 1wjn_A Tubulin-folding protein 99.9 2.3E-21 7.8E-26 137.2 11.3 91 8-98 4-96 (97)
7 3plu_A Ubiquitin-like modifier 99.6 6.9E-15 2.4E-19 103.7 9.5 75 9-92 17-91 (93)
8 2wyq_A HHR23A, UV excision rep 99.6 1.7E-14 5.9E-19 98.2 9.9 77 12-97 4-83 (85)
9 3phx_B Ubiquitin-like protein 99.6 1.9E-14 6.6E-19 97.0 9.5 73 12-93 3-75 (79)
10 2bwf_A Ubiquitin-like protein 99.6 2.7E-14 9.2E-19 95.3 10.1 73 13-95 4-76 (77)
11 1wxv_A BAG-family molecular ch 99.6 1.3E-14 4.4E-19 101.0 8.3 79 10-97 4-87 (92)
12 2kk8_A Uncharacterized protein 99.5 1.1E-14 3.9E-19 100.3 7.2 74 12-93 9-82 (84)
13 4dwf_A HLA-B-associated transc 99.5 6E-14 2E-18 96.8 10.5 80 10-99 2-81 (90)
14 3m63_B Ubiquitin domain-contai 99.5 1.1E-14 3.9E-19 103.6 6.1 77 10-96 25-101 (101)
15 2klc_A Ubiquilin-1; ubiquitin- 99.5 6.6E-14 2.2E-18 99.5 9.9 81 6-96 18-98 (101)
16 1uel_A HHR23B, UV excision rep 99.5 9E-14 3.1E-18 97.4 10.3 77 15-100 2-81 (95)
17 3v6c_B Ubiquitin; structural g 99.5 7.5E-14 2.6E-18 96.8 9.8 76 9-93 13-88 (91)
18 2dzi_A Ubiquitin-like protein 99.5 6.2E-14 2.1E-18 94.4 9.0 77 9-94 3-79 (81)
19 2faz_A Ubiquitin-like containi 99.5 1.6E-13 5.4E-18 92.1 10.7 73 13-94 2-76 (78)
20 1v5o_A 1700011N24RIK protein; 99.5 5.3E-14 1.8E-18 100.0 8.7 79 11-95 5-85 (102)
21 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 6.4E-14 2.2E-18 95.9 8.8 77 9-94 3-79 (87)
22 4a20_A Ubiquitin-like protein 99.5 6.7E-14 2.3E-18 99.5 9.1 82 8-96 14-97 (98)
23 4eew_A Large proline-rich prot 99.5 9.5E-14 3.2E-18 95.4 9.6 73 11-93 15-87 (88)
24 3dbh_I NEDD8; cell cycle, acti 99.5 8.2E-14 2.8E-18 95.3 9.1 77 9-94 8-84 (88)
25 1wju_A NEDD8 ultimate buster-1 99.5 7.6E-14 2.6E-18 99.7 9.0 79 12-97 14-94 (100)
26 4dbg_A Ranbp-type and C3HC4-ty 99.5 9.9E-14 3.4E-18 99.9 9.7 81 9-96 18-101 (105)
27 2kan_A Uncharacterized protein 99.5 7.9E-14 2.7E-18 98.0 8.8 78 8-95 10-88 (94)
28 1we7_A SF3A1 protein; structur 99.5 3.6E-14 1.2E-18 102.9 7.3 79 9-94 21-107 (115)
29 2hj8_A Interferon-induced 17 k 99.5 4.4E-14 1.5E-18 97.7 7.3 75 12-95 3-77 (88)
30 4fbj_B NEDD8; effector-HOST ta 99.5 1.4E-13 4.9E-18 95.2 9.5 71 15-94 2-72 (88)
31 1v86_A DNA segment, CHR 7, way 99.5 3.6E-14 1.2E-18 99.8 6.6 77 8-95 12-88 (95)
32 3u30_A Ubiquitin, linear DI-ub 99.5 2.5E-13 8.5E-18 104.3 11.7 111 9-136 16-127 (172)
33 1ttn_A DC-UBP, dendritic cell- 99.5 9.4E-14 3.2E-18 99.3 8.6 78 10-96 20-97 (106)
34 3m62_B UV excision repair prot 99.5 6.7E-14 2.3E-18 100.3 7.4 75 14-97 2-76 (106)
35 1uh6_A Ubiquitin-like 5; beta- 99.5 8.7E-14 3E-18 99.4 7.9 73 11-92 26-98 (100)
36 4hcn_B Polyubiquitin, ubiquiti 99.5 2E-13 6.7E-18 96.2 8.9 77 9-94 18-94 (98)
37 1ndd_A NEDD8, protein (ubiquit 99.5 2.4E-13 8.2E-18 90.0 8.8 71 15-94 2-72 (76)
38 2kd0_A LRR repeats and ubiquit 99.5 4.4E-13 1.5E-17 92.3 10.2 74 11-94 10-83 (85)
39 3mtn_B UBA80, ubcep1, ubiquiti 99.5 3.1E-13 1E-17 91.6 9.3 73 13-94 3-75 (85)
40 3n3k_B Ubiquitin; hydrolase, p 99.5 2.2E-13 7.7E-18 92.4 8.5 73 13-94 3-75 (85)
41 1we6_A Splicing factor, putati 99.5 2.7E-13 9.2E-18 97.6 9.1 78 10-94 24-103 (111)
42 3rt3_B Ubiquitin-like protein 99.5 5E-13 1.7E-17 101.0 11.0 108 14-136 3-112 (159)
43 1wy8_A NP95-like ring finger p 99.5 2.7E-13 9.3E-18 93.2 8.7 76 10-94 4-81 (89)
44 2l7r_A Ubiquitin-like protein 99.5 1.1E-13 3.8E-18 96.8 6.8 79 4-93 10-88 (93)
45 3b08_A Polyubiquitin-C, ubiqui 99.4 6.3E-13 2.2E-17 98.9 10.8 105 15-136 2-107 (152)
46 1wx8_A Riken cDNA 4931431F19; 99.4 1.3E-13 4.5E-18 96.4 6.6 76 10-95 14-89 (96)
47 3a9j_A Ubiquitin; protein comp 99.4 5.1E-13 1.7E-17 88.4 9.1 71 15-94 2-72 (76)
48 3vdz_A Ubiquitin-40S ribosomal 99.4 4.7E-13 1.6E-17 96.6 9.3 74 12-94 34-107 (111)
49 1j8c_A Ubiquitin-like protein 99.4 5.6E-13 1.9E-17 98.4 9.6 75 11-95 30-104 (125)
50 3k9o_B Ubiquitin, UBB+1; E2-25 99.4 5.5E-13 1.9E-17 92.9 9.1 72 14-94 2-73 (96)
51 1sif_A Ubiquitin; hydrophobic 99.4 6.1E-13 2.1E-17 91.9 9.0 72 14-94 10-81 (88)
52 1yqb_A Ubiquilin 3; structural 99.4 5.1E-13 1.7E-17 94.8 8.8 78 8-95 17-94 (100)
53 1wgd_A Homocysteine-responsive 99.4 3.6E-13 1.2E-17 93.8 7.7 78 10-94 4-85 (93)
54 2ojr_A Ubiquitin; lanthide-bin 99.4 1.6E-12 5.5E-17 93.6 11.2 76 10-94 32-107 (111)
55 1wf9_A NPL4 family protein; be 99.4 3.4E-13 1.2E-17 96.8 6.9 81 13-96 7-96 (107)
56 1yx5_B Ubiquitin; proteasome, 99.4 1.6E-12 5.4E-17 91.3 9.7 73 15-96 2-74 (98)
57 2lxa_A Ubiquitin-like protein 99.4 2.8E-13 9.5E-18 94.3 5.5 74 14-94 2-77 (87)
58 1wx7_A Ubiquilin 3; ubiquitin- 99.4 1.2E-12 4.1E-17 93.4 8.9 75 11-95 15-89 (106)
59 2kdi_A Ubiquitin, vacuolar pro 99.4 2.1E-12 7.4E-17 93.6 10.3 75 13-96 9-83 (114)
60 1wia_A Hypothetical ubiquitin- 99.4 1.3E-12 4.6E-17 91.1 8.9 78 11-99 5-82 (95)
61 1x1m_A Ubiquitin-like protein 99.4 8E-13 2.7E-17 94.7 7.4 83 8-97 7-102 (107)
62 2uyz_B Small ubiquitin-related 99.4 1.3E-12 4.3E-17 87.9 7.6 73 13-94 3-75 (79)
63 1wyw_B Ubiquitin-like protein 99.4 1.4E-12 4.7E-17 91.9 7.6 76 10-94 18-93 (97)
64 4ajy_B Transcription elongatio 99.4 3.7E-12 1.3E-16 93.3 10.2 87 16-119 5-98 (118)
65 1wgg_A Ubiquitin carboxyl-term 99.4 1.4E-12 4.7E-17 91.9 7.5 75 10-95 4-79 (96)
66 2kdb_A Homocysteine-responsive 99.4 9.6E-13 3.3E-17 93.6 6.1 77 9-92 19-99 (99)
67 1v5t_A 8430435I17RIK protein; 99.3 1.1E-12 3.8E-17 91.1 5.9 75 11-95 5-83 (90)
68 3rt3_B Ubiquitin-like protein 99.3 5.2E-12 1.8E-16 95.4 9.8 74 12-94 80-153 (159)
69 2dzm_A FAS-associated factor 1 99.3 1.9E-12 6.5E-17 92.3 6.9 74 13-95 9-82 (100)
70 1v2y_A 3300001G02RIK protein; 99.3 1.3E-12 4.4E-17 94.0 5.7 74 13-94 7-95 (105)
71 3l0w_B Monoubiquitinated proli 99.3 5.8E-12 2E-16 97.3 9.5 71 15-94 2-72 (169)
72 2dzj_A Synaptic glycoprotein S 99.3 5E-12 1.7E-16 87.9 8.2 75 13-94 10-88 (88)
73 3b1l_X E3 ubiquitin-protein li 99.0 1.3E-13 4.4E-18 92.0 0.0 70 15-93 2-71 (76)
74 2daf_A FLJ35834 protein; hypot 99.3 4.1E-12 1.4E-16 92.9 7.9 85 4-96 6-90 (118)
75 2fnj_B Transcription elongatio 99.3 7.1E-12 2.4E-16 91.9 8.4 71 14-94 3-80 (118)
76 3u30_A Ubiquitin, linear DI-ub 99.3 9.7E-12 3.3E-16 95.3 8.9 71 14-93 97-167 (172)
77 3q3f_A Ribonuclease/ubiquitin 99.3 1E-11 3.6E-16 97.7 9.0 72 14-94 106-177 (189)
78 3b08_A Polyubiquitin-C, ubiqui 99.2 3.6E-11 1.2E-15 89.3 9.7 72 14-94 77-148 (152)
79 1wgh_A Ubiquitin-like 3, HCG-1 99.2 5.7E-11 1.9E-15 86.8 10.3 78 9-95 12-99 (116)
80 3u5e_m 60S ribosomal protein L 99.2 7.1E-13 2.4E-17 97.8 0.0 72 15-95 2-73 (128)
81 2kzr_A Ubiquitin thioesterase 99.2 2.9E-11 9.8E-16 83.2 7.5 77 15-96 2-79 (86)
82 3ai5_A Yeast enhanced green fl 99.2 3.8E-11 1.3E-15 100.8 9.5 78 7-93 227-304 (307)
83 3shq_A UBLCP1; phosphatase, hy 99.2 4.6E-11 1.6E-15 100.8 9.9 120 10-141 2-131 (320)
84 2gow_A HCG-1 protein, ubiquiti 99.2 2.7E-11 9.1E-16 89.6 7.3 80 7-95 11-100 (125)
85 1se9_A Ubiquitin family; ubiqu 99.2 8.3E-11 2.8E-15 87.1 8.5 74 12-94 15-102 (126)
86 3u5c_f 40S ribosomal protein S 99.2 2.6E-12 9E-17 97.9 0.0 71 15-94 2-72 (152)
87 1oqy_A HHR23A, UV excision rep 99.0 3.9E-10 1.3E-14 96.8 6.7 76 9-93 3-82 (368)
88 2io1_B Small ubiquitin-related 98.9 1.7E-08 5.8E-13 70.8 9.6 76 10-94 4-79 (94)
89 1wm3_A Ubiquitin-like protein 98.8 9.2E-08 3.1E-12 63.5 10.0 70 14-92 2-71 (72)
90 2io0_B Small ubiquitin-related 98.8 8.1E-08 2.8E-12 67.0 10.0 77 10-95 2-78 (91)
91 3a4r_A Nfatc2-interacting prot 98.7 6.1E-08 2.1E-12 65.7 8.7 76 8-92 2-78 (79)
92 2xzm_9 RPS31E; ribosome, trans 98.7 1.8E-09 6.1E-14 85.0 0.0 65 15-93 2-66 (189)
93 2d07_B Ubiquitin-like protein 98.7 2.3E-07 8E-12 64.7 10.2 75 11-94 15-89 (93)
94 1wz0_A Ubiquitin-like protein 98.6 3.5E-07 1.2E-11 65.3 9.4 75 11-94 22-96 (104)
95 2eke_C Ubiquitin-like protein 98.5 1.2E-06 4E-11 62.8 9.9 74 11-94 29-102 (106)
96 2k8h_A Small ubiquitin protein 98.4 4.7E-07 1.6E-11 65.3 6.8 75 12-95 25-99 (110)
97 3kyd_D Small ubiquitin-related 98.0 6.7E-05 2.3E-09 54.4 10.2 74 12-94 39-112 (115)
98 2pjh_A Protein NPL4, nuclear p 98.0 3.5E-06 1.2E-10 57.2 2.7 75 14-93 5-79 (80)
99 4efo_A Serine/threonine-protei 97.9 4.1E-05 1.4E-09 53.7 7.8 73 15-93 14-87 (94)
100 3pge_A SUMO-modified prolifera 97.9 9.3E-05 3.2E-09 58.4 10.2 75 10-94 26-100 (200)
101 3tix_A Ubiquitin-like protein 97.7 0.0002 6.9E-09 56.4 8.8 74 11-94 55-128 (207)
102 2bps_A YUKD protein; ubiquitin 97.6 0.00015 5E-09 49.5 6.1 75 12-91 3-80 (81)
103 3jyu_A Ubiquitin carboxyl-term 97.4 0.0017 5.7E-08 51.9 10.8 69 27-96 153-222 (231)
104 3goe_A DNA repair protein RAD6 97.3 0.0042 1.4E-07 42.1 10.1 73 12-93 8-81 (82)
105 4a3p_A Ubiquitin carboxyl-term 97.2 0.0015 5.1E-08 51.7 8.5 68 27-95 141-209 (217)
106 3qx1_A FAS-associated factor 1 97.2 0.0077 2.6E-07 40.5 10.7 81 8-93 2-82 (84)
107 3uf8_A Ubiquitin-like protein 96.6 0.014 5E-07 45.7 9.8 77 8-94 16-92 (209)
108 3v7o_A Minor nucleoprotein VP3 96.6 0.00032 1.1E-08 55.9 0.0 75 10-94 18-92 (227)
109 1oey_A P67-PHOX, neutrophil cy 96.6 0.0098 3.3E-07 40.6 7.4 50 13-66 5-54 (83)
110 1wj4_A KIAA0794 protein; UBX d 96.4 0.045 1.5E-06 39.7 10.5 83 11-98 41-123 (124)
111 2jxx_A Nfatc2-interacting prot 96.4 0.027 9.1E-07 39.3 8.8 75 10-92 22-96 (97)
112 1vd2_A Protein kinase C, IOTA 96.4 0.013 4.6E-07 40.3 7.0 79 11-93 4-88 (89)
113 2dzk_A UBX domain-containing p 96.2 0.067 2.3E-06 37.8 10.2 80 11-95 11-91 (109)
114 2r2o_A Plexin-B1; effector dom 96.0 0.053 1.8E-06 40.2 9.2 86 9-95 20-129 (138)
115 4e71_A Plexin-B2, MM1; transme 95.7 0.066 2.2E-06 38.3 8.4 80 11-93 9-109 (111)
116 2kc2_A Talin-1, F1; FERM, adhe 95.7 0.022 7.6E-07 41.8 5.9 77 15-94 13-122 (128)
117 3h6n_A Plexin-D1; structural g 95.4 0.13 4.5E-06 37.6 9.2 66 27-94 18-104 (127)
118 2cr5_A Reproduction 8; UBX dom 95.3 0.13 4.3E-06 36.2 8.5 80 11-96 21-100 (109)
119 1q1o_A Cell division control p 95.3 0.038 1.3E-06 38.7 5.7 59 11-69 3-71 (98)
120 3ix6_A TS, tsase, thymidylate 95.1 0.0038 1.3E-07 53.2 0.0 76 9-94 17-92 (360)
121 4e74_A Plexin-A4; RBD, structu 95.0 0.16 5.3E-06 36.7 8.4 83 11-94 11-114 (117)
122 4da1_A Protein phosphatase 1K, 94.3 0.0077 2.6E-07 51.1 0.0 75 10-94 27-101 (389)
123 3ivf_A Talin-1; FERM domain, c 94.2 0.16 5.5E-06 42.4 8.1 66 26-92 13-82 (371)
124 3kuz_A Plexin-C1; structural g 93.7 1.2 4E-05 32.5 10.7 79 13-92 19-124 (126)
125 2kvr_A Ubiquitin carboxyl-term 93.4 0.1 3.5E-06 38.1 4.7 35 28-62 58-92 (130)
126 2l76_A Nfatc2-interacting prot 93.3 0.61 2.1E-05 32.4 8.3 75 11-95 19-93 (95)
127 1pqs_A Cell division control p 92.9 0.11 3.7E-06 34.8 3.8 43 27-69 3-50 (77)
128 2daj_A KIAA0977 protein, COBL- 92.5 0.83 2.8E-05 31.2 7.8 81 7-96 4-84 (91)
129 1s3s_G P47 protein; AAA ATPase 90.9 0.71 2.4E-05 33.3 6.6 74 11-90 50-124 (127)
130 3ig3_A Plxna3 protein; plexin 90.2 3.6 0.00012 37.2 11.7 84 10-94 230-334 (627)
131 3hm6_X Plexin-B1; structural g 89.3 3 0.0001 37.9 10.4 84 10-94 254-361 (644)
132 3onh_A Ubiquitin-activating en 87.0 2.5 8.6E-05 30.7 7.0 58 35-95 19-80 (127)
133 1ip9_A BEM1 protein; ubiquitin 86.7 3.7 0.00013 27.8 7.3 45 12-61 11-55 (85)
134 2ylm_A Ubiquitin carboxyl-term 85.8 0.94 3.2E-05 40.1 5.2 35 28-62 38-72 (530)
135 2al3_A TUG long isoform; TUG U 82.8 3.3 0.00011 28.3 5.7 72 15-95 11-82 (90)
136 2bkf_A Zinc-finger protein NBR 75.4 16 0.00055 24.7 7.9 54 11-69 4-59 (87)
137 2ktr_A Sequestosome-1; autopha 71.8 2.7 9.1E-05 30.1 2.8 34 36-69 57-91 (117)
138 4eut_A Serine/threonine-protei 71.4 30 0.001 28.1 9.7 63 27-94 323-386 (396)
139 1wj6_A KIAA0049 protein, RSGI 71.0 20 0.00067 25.0 7.0 53 12-69 13-67 (101)
140 1y8x_B Ubiquitin-activating en 69.9 4.1 0.00014 28.2 3.3 67 27-95 6-85 (98)
141 2kkc_A Sequestosome-1; P62, PB 67.5 3 0.0001 29.1 2.3 34 36-69 42-76 (102)
142 1f0z_A THis protein; ubiquitin 65.4 15 0.00051 22.7 5.2 53 29-93 9-61 (66)
143 1tyg_B YJBS; alpha beta barrel 64.9 18 0.00062 24.1 5.8 54 28-93 28-82 (87)
144 1ryj_A Unknown; beta/alpha pro 64.8 23 0.00079 22.2 7.0 51 27-93 15-65 (70)
145 2ylm_A Ubiquitin carboxyl-term 64.5 22 0.00077 31.2 7.8 66 13-80 339-407 (530)
146 1wmh_B Partitioning defective- 61.5 26 0.00087 23.6 6.0 36 34-69 26-61 (86)
147 2l32_A Small archaeal modifier 61.3 29 0.001 22.2 6.4 50 27-93 12-61 (74)
148 3qa8_A MGC80376 protein; kinas 60.1 5.8 0.0002 36.1 3.3 34 27-60 323-356 (676)
149 2hj1_A Hypothetical protein; s 54.7 47 0.0016 22.5 7.1 70 12-93 11-84 (97)
150 2cu3_A Unknown function protei 54.2 34 0.0012 20.8 6.3 52 29-93 8-59 (64)
151 2nvu_B Maltose binding protein 46.0 40 0.0014 30.6 6.5 68 27-95 713-792 (805)
152 2juo_A GA-binding protein alph 42.3 57 0.0019 22.0 5.1 50 30-86 7-56 (89)
153 2kl0_A Putative thiamin biosyn 42.1 63 0.0022 20.4 5.3 52 29-93 9-60 (73)
154 3rpf_C Molybdopterin convertin 40.3 65 0.0022 20.0 5.5 53 29-93 15-69 (74)
155 2c7h_A RBBP6, retinoblastoma-b 36.7 47 0.0016 22.3 4.1 37 27-63 19-56 (86)
156 2v1y_A Phosphatidylinositol-4, 35.9 1.1E+02 0.0037 21.3 8.5 73 10-86 16-97 (108)
157 1wgy_A RAP guanine nucleotide 34.0 1.2E+02 0.0039 21.0 7.3 79 13-95 9-87 (104)
158 1wgr_A Growth factor receptor- 33.6 55 0.0019 22.4 4.1 30 27-56 21-50 (100)
159 1wy3_A Villin; structural prot 32.4 22 0.00075 19.9 1.6 20 113-136 9-28 (35)
160 3ro3_B Minsc, peptide of prote 32.2 23 0.0008 17.6 1.4 11 126-136 8-18 (22)
161 1vjk_A Molybdopterin convertin 32.0 1.1E+02 0.0037 20.1 7.5 23 27-49 28-50 (98)
162 3po0_A Small archaeal modifier 31.1 1E+02 0.0035 19.6 6.8 23 27-49 19-41 (89)
163 2k5p_A THis protein, thiamine- 29.5 35 0.0012 22.0 2.4 53 29-93 9-64 (78)
164 1und_A Advillin, P92; actin bi 28.1 28 0.00097 19.6 1.6 21 112-136 10-30 (37)
165 1rws_A Hypothetical protein PF 26.2 20 0.00068 22.9 0.7 48 29-92 24-71 (77)
166 1wgk_A Riken cDNA 2900073H19 p 25.7 49 0.0017 23.0 2.8 64 27-94 31-104 (114)
167 1fm0_D Molybdopterin convertin 25.5 1.2E+02 0.0042 18.7 4.7 49 33-93 23-76 (81)
168 2i1j_A Moesin; FERM, coiled-co 25.5 3.4E+02 0.012 23.8 9.6 69 13-86 4-73 (575)
169 3s57_A Alpha-ketoglutarate-dep 23.9 1.9E+02 0.0065 21.7 6.1 31 35-65 81-111 (204)
170 3b64_A Macrophage migration in 23.1 91 0.0031 20.7 3.8 25 38-62 77-101 (112)
171 3tca_A Amyloid beta A4 precurs 23.0 1.9E+02 0.0067 22.0 6.2 31 25-55 44-74 (291)
172 3abf_A 4-oxalocrotonate tautom 22.8 91 0.0031 18.1 3.4 25 38-62 21-45 (64)
173 1hfo_A Migration inhibitory fa 22.7 86 0.003 20.8 3.6 24 39-62 77-100 (113)
174 1dd4_C 50S ribosomal protein L 22.6 66 0.0023 18.4 2.5 20 35-54 12-34 (40)
175 1uiz_A MIF, macrophage migrati 22.2 90 0.0031 20.8 3.6 24 39-62 78-101 (115)
176 2kmc_A Fermitin family homolog 22.0 2E+02 0.0068 19.8 7.4 77 13-93 19-98 (102)
177 2wkb_A Macrophage migration in 21.6 99 0.0034 21.1 3.8 25 38-62 77-101 (125)
178 4gmv_A RAS-associated and plec 21.6 1.6E+02 0.0056 23.6 5.6 66 26-93 42-113 (281)
179 4dh4_A MIF; trimer, isomerase; 21.5 94 0.0032 20.8 3.6 24 39-62 78-101 (114)
180 3djh_A Macrophage migration in 20.6 1E+02 0.0036 20.6 3.7 27 39-65 77-103 (114)
181 2opa_A Probable tautomerase YW 20.5 1.2E+02 0.004 17.4 3.5 24 39-62 21-44 (61)
182 2q5w_D Molybdopterin convertin 20.4 1.2E+02 0.0042 18.5 3.8 53 28-93 18-72 (77)
183 1ujs_A Actin-binding LIM prote 20.3 35 0.0012 23.0 1.1 28 105-136 48-75 (88)
184 2xcz_A Possible ATLS1-like lig 20.3 1E+02 0.0035 20.5 3.6 25 38-62 77-101 (115)
185 2os5_A Acemif; macrophage migr 20.1 1E+02 0.0035 20.7 3.6 24 39-62 78-101 (119)
186 1ef1_A Moesin; membrane, FERM 20.1 3E+02 0.01 21.2 9.2 68 14-86 2-70 (294)
No 1
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=100.00 E-value=8.7e-38 Score=231.14 Aligned_cols=118 Identities=33% Similarity=0.580 Sum_probs=77.8
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
+.|+|.|+|+... +..+++|++++||++||+||+.++||||++|||++.+.+|+.+..|++|+++|++|||++|++|||
T Consensus 5 ~~v~l~V~~~~~~-~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 5 EVYDLEITTNATD-FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CEEEEEEEESSCC-SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CEEEEEEEECCCC-ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 3899999987654 679999999999999999999999999999999987555666555778999999999999999999
Q ss_pred EeCCCCcccCCCccccCCcceeeecCHHHhhcccchHHHHHHH
Q 031156 92 IDLDPSSVTSGGWLEDTSLVEKYTISEEEYSKRDGTFRKFKEK 134 (165)
Q Consensus 92 ~D~~p~s~~~~~~l~d~s~veky~lsee~Y~kr~dtv~~~kk~ 134 (165)
+|++|++ .+ |+|+|.|+||+||+|+|+||+||||+||++
T Consensus 84 vd~~p~~--~~--~~d~s~v~ky~~~~e~Y~~r~~tv~~~k~~ 122 (122)
T 1t0y_A 84 VDVTGGN--ED--FKDESMVEKYEMSDDTYGKRTDSVRAWKKK 122 (122)
T ss_dssp EECTTCC--CC--------------------------------
T ss_pred EeCCCCC--CC--ccccccceeeecCHHHHhcchhHHHHHhhC
Confidence 9999988 33 999999999999999999999999999985
No 2
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.94 E-value=4.1e-27 Score=164.40 Aligned_cols=86 Identities=29% Similarity=0.512 Sum_probs=81.3
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
++|+|.||||.+..++.|+||++++||++||+||+.++||||++|+|+|++.+|.+...+++|+++|++|||++|++|||
T Consensus 1 s~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 1 SVVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp CEEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred CEEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 47999999999988899999999999999999999999999999999999877777777899999999999999999999
Q ss_pred EeCCCC
Q 031156 92 IDLDPS 97 (165)
Q Consensus 92 ~D~~p~ 97 (165)
+|++|+
T Consensus 81 vd~~P~ 86 (86)
T 4b6w_A 81 VDLQPS 86 (86)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999985
No 3
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.91 E-value=3.2e-24 Score=152.90 Aligned_cols=90 Identities=71% Similarity=1.198 Sum_probs=81.3
Q ss_pred cccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCC
Q 031156 7 QIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (165)
Q Consensus 7 ~~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg 86 (165)
-+..+++|+|.|+++++..+..+++|++++||++||+||+.++||||++|||+|++.+|+.+..|++|+++|++|||++|
T Consensus 8 ~~~~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g 87 (97)
T 2kj6_A 8 HSHGDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDG 87 (97)
T ss_dssp CCCCCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSC
T ss_pred ccCCCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCC
Confidence 35678899999999888778899999999999999999999999999999999886556655557789999999999999
Q ss_pred cEEEEEeCCC
Q 031156 87 YRLHVIDLDP 96 (165)
Q Consensus 87 ~~IhV~D~~p 96 (165)
++|||+|++|
T Consensus 88 ~~Ihlvd~~p 97 (97)
T 2kj6_A 88 FRLHIIDLDP 97 (97)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEeCCC
Confidence 9999999987
No 4
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.87 E-value=7.2e-22 Score=140.09 Aligned_cols=86 Identities=24% Similarity=0.465 Sum_probs=77.1
Q ss_pred cccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCC
Q 031156 7 QIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (165)
Q Consensus 7 ~~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg 86 (165)
.-.+++.|+|.|+++...++..+++|++++||++||+||+.++||||++|||+|.+ +|+.+..|++|+++|++|||++|
T Consensus 9 ~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~g 87 (95)
T 2kjr_A 9 SHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDG 87 (95)
T ss_dssp CCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSS
T ss_pred ccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCC
Confidence 44678899999999888778999999999999999999999999999999998874 35554457789999999999999
Q ss_pred cEEEEEe
Q 031156 87 YRLHVID 93 (165)
Q Consensus 87 ~~IhV~D 93 (165)
++|||+|
T Consensus 88 stihlvD 94 (95)
T 2kjr_A 88 LRLHVVD 94 (95)
T ss_dssp CEEEEEE
T ss_pred CEEEEEC
Confidence 9999999
No 5
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.86 E-value=1.9e-21 Score=137.16 Aligned_cols=90 Identities=28% Similarity=0.409 Sum_probs=78.4
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
.+.|+|.|+|+... +..++++++++||++||+||+.++||||++|+|++.+.+|+.+..|++|+++|++|||++|++||
T Consensus 5 ~~~v~l~I~~~~~~-~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~ 83 (95)
T 1v6e_A 5 SSGVMVFISSSLNS-FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH 83 (95)
T ss_dssp CCCEEEEEEETTSS-SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEE
T ss_pred CcEEEEEEEECCCC-eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEE
Confidence 34699999987654 67999999999999999999999999999999988754566554567899999999999999999
Q ss_pred EEeCCCCcccC
Q 031156 91 VIDLDPSSVTS 101 (165)
Q Consensus 91 V~D~~p~s~~~ 101 (165)
|+|++|+++..
T Consensus 84 v~d~~P~~~~~ 94 (95)
T 1v6e_A 84 VIDHSGSGPSS 94 (95)
T ss_dssp EBCCSCCSSSC
T ss_pred EEECCcccccC
Confidence 99999988753
No 6
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.86 E-value=2.3e-21 Score=137.18 Aligned_cols=91 Identities=25% Similarity=0.268 Sum_probs=79.2
Q ss_pred ccCCccEEEEEEec-CCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCC-CCeeeccCCCCCccCCCCCCC
Q 031156 8 IEGDESVLLRVTHS-NLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDT-NTKVAALTDNSRPLGFYSPLQ 85 (165)
Q Consensus 8 ~~~~~~V~v~It~s-~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~-g~~i~~l~dD~~~L~~ygv~d 85 (165)
...++.|+|.|+|+ .+++...+++|++++||++||.+|+.+||+||..|+|.+++.. +.....|++|.++|++|||.+
T Consensus 4 ~~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~ 83 (97)
T 1wjn_A 4 GSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN 83 (97)
T ss_dssp CSSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred cccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCC
Confidence 35677999999984 4677789999999999999999999999999999999998532 223445889999999999999
Q ss_pred CcEEEEEeCCCCc
Q 031156 86 GYRLHVIDLDPSS 98 (165)
Q Consensus 86 g~~IhV~D~~p~s 98 (165)
|++|||+|++|+|
T Consensus 84 G~~I~V~d~~p~s 96 (97)
T 1wjn_A 84 GDCLLVRWSGPSS 96 (97)
T ss_dssp TCEEEEECCSSCC
T ss_pred CCEEEEEecCCCC
Confidence 9999999999876
No 7
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.59 E-value=6.9e-15 Score=103.72 Aligned_cols=75 Identities=19% Similarity=0.130 Sum_probs=64.4
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
..++.+.|+|+. ++++...+.+.|+.||++||++|+..+||||++|+|++ .|+. ++|..+|++|+|++|++
T Consensus 17 ~~~~mIqI~Vk~--~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif---~Gk~----LkD~~TL~dY~I~dgst 87 (93)
T 3plu_A 17 RGSHMIEVVVND--RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK---GGSV----LKDHISLEDYEVHDQTN 87 (93)
T ss_dssp ---CEEEEEEEC--TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBTGGGTCCTTCE
T ss_pred CCCceEEEEEEC--CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe---CCEE----ccCcCCHHHcCCCCCCE
Confidence 344688888885 57789999999999999999999999999999999975 5764 47889999999999999
Q ss_pred EEEE
Q 031156 89 LHVI 92 (165)
Q Consensus 89 IhV~ 92 (165)
||+-
T Consensus 88 LhL~ 91 (93)
T 3plu_A 88 LELY 91 (93)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9974
No 8
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.57 E-value=1.7e-14 Score=98.24 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=64.7
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHH---HCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~---tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
+.++|+|++. .+...++++++++||.+||++|+.. +|+|++.|+|++ .|+. ++|+.+|++|||++|++
T Consensus 4 ~~m~i~vk~~--~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~~i~~g~~ 74 (85)
T 2wyq_A 4 MAVTITLKTL--QQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKI----LSDDVPIRDYRIDEKNF 74 (85)
T ss_dssp CCEEEEEEET--TSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE---TTEE----CCTTSBGGGGCCCTTSE
T ss_pred ceEEEEEEEC--CCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE---CCEE----CcCCCCHHHcCCCCCCE
Confidence 5688899863 4557889999999999999999998 899999999975 4764 36789999999999999
Q ss_pred EEEEeCCCC
Q 031156 89 LHVIDLDPS 97 (165)
Q Consensus 89 IhV~D~~p~ 97 (165)
|||+...|.
T Consensus 75 i~l~~~~~~ 83 (85)
T 2wyq_A 75 VVVMVTKTK 83 (85)
T ss_dssp EEEEEC---
T ss_pred EEEEEcCCC
Confidence 999998764
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.56 E-value=1.9e-14 Score=96.98 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=63.4
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
+.++|+|++ +.+....+++++++||++||++|+..+|+||+.|+|++ .|+. .+|+.+|++|||++|++||+
T Consensus 3 ~~m~i~Vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~----L~d~~tL~~~~i~~~~~l~l 73 (79)
T 3phx_B 3 EPLSILVRN--NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKP----LEDQLPLGEYGLKPLSTVFM 73 (79)
T ss_dssp CCEEEEEEC--TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTCCTTCEEEE
T ss_pred CCEEEEEEe--CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE---CCEE----CCCCCcHHHCCCCCCCEEEE
Confidence 457888885 45667889999999999999999999999999999975 4764 46789999999999999999
Q ss_pred Ee
Q 031156 92 ID 93 (165)
Q Consensus 92 ~D 93 (165)
+-
T Consensus 74 ~~ 75 (79)
T 3phx_B 74 NL 75 (79)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 10
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.56 E-value=2.7e-14 Score=95.30 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=63.3
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
.++|.|++ .+...++++++++||++||++|+..+|+|++.|+|.+ .|+. .+|+.+|++||+++|++|||+
T Consensus 4 ~m~i~vk~---~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~----L~d~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 4 SLNIHIKS---GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKI----LKDDQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp EEEEEEEE---TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEEEE---CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCeE----cCCCCCHHHcCCCCCCEEEEE
Confidence 47888886 4557889999999999999999999999999999975 4764 367799999999999999999
Q ss_pred eCC
Q 031156 93 DLD 95 (165)
Q Consensus 93 D~~ 95 (165)
+..
T Consensus 74 ~~~ 76 (77)
T 2bwf_A 74 KSQ 76 (77)
T ss_dssp ECC
T ss_pred EcC
Confidence 853
No 11
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.3e-14 Score=100.96 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=66.7
Q ss_pred CCccEEEEEEecCCCCceEEEEecCC-----CCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCC
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQ-----MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL 84 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~-----~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~ 84 (165)
.+..++|.|+++ +...+++++++ +||.+||++|+..+|+||..|+|++ .|+. |.|++.+|.+|||+
T Consensus 4 ~~~~~~v~Vk~~---~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~---~Gk~---L~D~~~~L~~~~i~ 74 (92)
T 1wxv_A 4 GSSGLTVTVTHS---NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF---KGKS---LKEMETPLSALGIQ 74 (92)
T ss_dssp CCSSEEEEEECS---SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---ECCSSSBHHHHTCC
T ss_pred CCCeEEEEEEEC---CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE---CCee---cCCCcccHHHCCCC
Confidence 345799999963 34678999995 9999999999999999999999975 4764 55668899999999
Q ss_pred CCcEEEEEeCCCC
Q 031156 85 QGYRLHVIDLDPS 97 (165)
Q Consensus 85 dg~~IhV~D~~p~ 97 (165)
+|++|||+...+.
T Consensus 75 ~g~~i~l~~~~~~ 87 (92)
T 1wxv_A 75 DGCRVMLIGKKNS 87 (92)
T ss_dssp SSEEEEEESCCSC
T ss_pred CCCEEEEEecCCC
Confidence 9999999997653
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.54 E-value=1.1e-14 Score=100.29 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=64.4
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
+.++|+|+. ++++..++++++++||++||++|+..+|+||++|+|++ .|+. +++|+.+|++|||++|++|||
T Consensus 9 ~~~~i~vk~--l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---lL~D~~tL~~y~I~~gs~i~l 80 (84)
T 2kk8_A 9 SHMKFLVEN--LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV---DGIV---ILREDLTVEQCQIVPTSDIQL 80 (84)
T ss_dssp CCEEEEEEE--TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE---CCCSSSBHHHHTCCTTSCEEE
T ss_pred CceEEEEEe--cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEE---ecCCcCCHHHcCCCCCCEEEE
Confidence 467888875 56778899999999999999999999999999999975 4763 257889999999999999999
Q ss_pred Ee
Q 031156 92 ID 93 (165)
Q Consensus 92 ~D 93 (165)
+-
T Consensus 81 v~ 82 (84)
T 2kk8_A 81 EV 82 (84)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 13
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.54 E-value=6e-14 Score=96.84 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=67.1
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
++..++|+|++ +.+....+++++++||.+||.+|+..+|+|+..|+|++ .|+. ++|+.+|.+||| +|++|
T Consensus 2 ~~~~m~i~Vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~----L~d~~tL~~~~i-~g~~i 71 (90)
T 4dwf_A 2 EPDSLEVLVKT--LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRV----LQDDKKLQEYNV-GGKVI 71 (90)
T ss_dssp CCCEEEEEEEE--TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTC-TTEEE
T ss_pred CCcEEEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCeE----CCCCCCHHHcCC-CCcEE
Confidence 34578888986 45567889999999999999999999999999999975 4764 467899999999 89999
Q ss_pred EEEeCCCCcc
Q 031156 90 HVIDLDPSSV 99 (165)
Q Consensus 90 hV~D~~p~s~ 99 (165)
|++...|.+.
T Consensus 72 ~l~~~~~~~~ 81 (90)
T 4dwf_A 72 HLVERAPPQT 81 (90)
T ss_dssp EEEECCCC--
T ss_pred EEEecCCCCC
Confidence 9999876543
No 14
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.1e-14 Score=103.61 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=63.5
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
++..|+|.|++ .+...++++++++||++||++|+..+|+|++.|+|++ .|+. ++|+.+|++|||++|++|
T Consensus 25 ~~m~i~I~Vk~---~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~gI~~g~tI 94 (101)
T 3m63_B 25 GAMSLNIHIKS---GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKI----LKDDQTVESYHIQDGHSV 94 (101)
T ss_dssp ----CCEEEEC---SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE---TTEE----CCTTSBTTTTTCCTTEEE
T ss_pred CCcEEEEEEEE---CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEE----CCCcCcHHHCCCCCCCEE
Confidence 44567888884 4456788999999999999999999999999999975 4763 467899999999999999
Q ss_pred EEEeCCC
Q 031156 90 HVIDLDP 96 (165)
Q Consensus 90 hV~D~~p 96 (165)
||+..+|
T Consensus 95 ~lv~~~P 101 (101)
T 3m63_B 95 HLVKSQP 101 (101)
T ss_dssp EECCCC-
T ss_pred EEEeCCC
Confidence 9999876
No 15
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.52 E-value=6.6e-14 Score=99.51 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=66.5
Q ss_pred ccccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCC
Q 031156 6 QQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQ 85 (165)
Q Consensus 6 ~~~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~d 85 (165)
+....+..++|.|++. +...++++++++||++||++|+..+|+|+..|+|++ .|+. | +|+.+|++|||++
T Consensus 18 ~~~~~~~~m~I~Vk~~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~---L-~D~~tL~~~gI~~ 87 (101)
T 2klc_A 18 YFQGHPKIMKVTVKTP---KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF---AGKI---L-KDQDTLSQHGIHD 87 (101)
T ss_dssp -----CCCEEEEEECS---SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE---TTEE---E-CTTCCTGGGTCCT
T ss_pred ccCCCCCeEEEEEEeC---CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCcCcHHHcCCCC
Confidence 3344567899999964 457889999999999999999999999999999975 4764 3 6789999999999
Q ss_pred CcEEEEEeCCC
Q 031156 86 GYRLHVIDLDP 96 (165)
Q Consensus 86 g~~IhV~D~~p 96 (165)
|++|||+...|
T Consensus 88 g~~I~l~~~~~ 98 (101)
T 2klc_A 88 GLTVHLVIKTQ 98 (101)
T ss_dssp TCEEEEEECCS
T ss_pred CCEEEEEEcCC
Confidence 99999998754
No 16
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=9e-14 Score=97.45 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=65.4
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHH---HCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK---CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~---tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
+|.|+. +.+...++++++++||.+||++|+.. +|+|++.|+|++ .|+. ++|+.+|++|||++|++|||
T Consensus 2 ~I~Vk~--~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~ygI~~g~~i~l 72 (95)
T 1uel_A 2 QVTLKT--LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY---AGKI----LNDDTALKEYKIDEKNFVVV 72 (95)
T ss_dssp EEEEEE--TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEE----CCTTSBGGGGTCCSSSEEEE
T ss_pred EEEEEe--CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE---CCEE----CCCcCcHHHCCCCCCCEEEE
Confidence 577775 34567889999999999999999999 899999999975 4764 36789999999999999999
Q ss_pred EeCCCCccc
Q 031156 92 IDLDPSSVT 100 (165)
Q Consensus 92 ~D~~p~s~~ 100 (165)
+...|.+..
T Consensus 73 ~~~~~~~~~ 81 (95)
T 1uel_A 73 MVTKPKAVS 81 (95)
T ss_dssp EESSCCCCC
T ss_pred EEeCCCCCC
Confidence 998776544
No 17
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.52 E-value=7.5e-14 Score=96.84 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=65.3
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
.+...++|+|+. +.+....+++++++||.+||++|+..+|+|+..|+|++ .|+. .+|+.+|++|||++|++
T Consensus 13 ~~~~~m~i~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~----L~D~~tL~~~gi~~g~~ 83 (91)
T 3v6c_B 13 VPRGSMQIFVNT--LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKEST 83 (91)
T ss_dssp CCCCSEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTCBTGGGTCCTTCE
T ss_pred CCCCeEEEEEEe--CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE---CCeE----CCCcCcHHHCCCCCCCE
Confidence 345578888885 45668889999999999999999999999999999975 4764 46789999999999999
Q ss_pred EEEEe
Q 031156 89 LHVID 93 (165)
Q Consensus 89 IhV~D 93 (165)
|||+.
T Consensus 84 i~l~~ 88 (91)
T 3v6c_B 84 LHLVL 88 (91)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99985
No 18
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=6.2e-14 Score=94.37 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=65.3
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
-++..++|.|+. ..+....+++++++||++||++|+..+|+|+..|+|.+ .|+. | +|+.+|++|||++|++
T Consensus 3 ~~~~~m~i~vk~--~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~---L-~d~~tL~~~~i~~g~~ 73 (81)
T 2dzi_A 3 SGSSGMQLTVKA--LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF---KGKA---L-ADGKRLSDYSIGPNSK 73 (81)
T ss_dssp CSSSSEEEEEEE--TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEE---C-CTTSBGGGGTCCSSBC
T ss_pred CCCCcEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCeE---C-CCCCcHHHcCCCCCCE
Confidence 345678999985 34567889999999999999999999999999999975 4764 3 6789999999999999
Q ss_pred EEEEeC
Q 031156 89 LHVIDL 94 (165)
Q Consensus 89 IhV~D~ 94 (165)
|||+-.
T Consensus 74 i~l~~~ 79 (81)
T 2dzi_A 74 LNLVVK 79 (81)
T ss_dssp CEEECC
T ss_pred EEEEEe
Confidence 999753
No 19
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=1.6e-13 Score=92.12 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=61.8
Q ss_pred cEEEEEEecCCCCceE-EEE-ecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 13 SVLLRVTHSNLKSFSA-DVR-FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~-e~r-~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
.++|+|++ +.++.. .++ ++++.||.+||++|+..+|+||+.|+|.+ .|+. .+|+.+|++||+++|++||
T Consensus 2 ~m~i~Vk~--~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~---~g~~----L~d~~tL~~~~i~~g~~i~ 72 (78)
T 2faz_A 2 SMWIQVRT--MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY---RGKQ----MEDGHTLFDYEVRLNDTIQ 72 (78)
T ss_dssp CEEEEEEE--TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTCBTTTTTCCTTCEEE
T ss_pred cEEEEEEE--CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEE----CCCCCCHHHcCCCCCCEEE
Confidence 46788886 344553 788 99999999999999999999999999975 4764 3678999999999999999
Q ss_pred EEeC
Q 031156 91 VIDL 94 (165)
Q Consensus 91 V~D~ 94 (165)
++-.
T Consensus 73 l~~r 76 (78)
T 2faz_A 73 LLVR 76 (78)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9864
No 20
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=5.3e-14 Score=100.01 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=65.7
Q ss_pred CccEEEEEEec--CCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 11 DESVLLRVTHS--NLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 11 ~~~V~v~It~s--~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
...++|+|++. .+.+....+++++++||.+||++|+..+|||++.|+|++ .|+. |.||..+|.+|||++|++
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~gk~---L~D~~~tL~~ygI~~g~~ 78 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY---MEQL---LTDDHCSLGSYGLKDGDM 78 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE---TTEE---ECCSSSBHHHHTCCTTEE
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE---CCEE---CCCCcccHHHCCCCCCCE
Confidence 34678888863 233467789999999999999999999999999999975 4664 556668999999999999
Q ss_pred EEEEeCC
Q 031156 89 LHVIDLD 95 (165)
Q Consensus 89 IhV~D~~ 95 (165)
|||+...
T Consensus 79 l~l~~~~ 85 (102)
T 1v5o_A 79 VVLLQKD 85 (102)
T ss_dssp EEECBCC
T ss_pred EEEEECC
Confidence 9999874
No 21
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=6.4e-14 Score=95.90 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=66.3
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
.+.+.++|+|++. .+...++++++++||.+||++|+..+|+||+.|+|.+ .|+. .+|+.+|.+|+|++|++
T Consensus 3 ~~~~~m~i~Vk~~--~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~----L~d~~tL~~~~i~~g~~ 73 (87)
T 1wh3_A 3 SGSSGIQVFVKNP--DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF---QGQV----LQDWLGLGIYGIQDSDT 73 (87)
T ss_dssp CCSSSEEEEEEET--TTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE---TTEE----CCSSSBHHHHTCCTTEE
T ss_pred CCCCCEEEEEEcC--CCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE---CCEE----ccCCCCHHHCCCCCCCE
Confidence 4556889999963 4567889999999999999999999999999999975 4664 36789999999999999
Q ss_pred EEEEeC
Q 031156 89 LHVIDL 94 (165)
Q Consensus 89 IhV~D~ 94 (165)
|||+-.
T Consensus 74 i~l~~~ 79 (87)
T 1wh3_A 74 LILSKK 79 (87)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999874
No 22
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.51 E-value=6.7e-14 Score=99.51 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=66.2
Q ss_pred ccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHH-HHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCC-CC
Q 031156 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQ 85 (165)
Q Consensus 8 ~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KL-e~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv-~d 85 (165)
+...+.++|+|++.....+..+++++++.||++||++| +..+|+||++|||+| .|+. +.|+.+|++|+| ++
T Consensus 14 ~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~----L~D~~tL~dy~I~~~ 86 (98)
T 4a20_A 14 KMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKV----LHDNLFLSDLKVTPA 86 (98)
T ss_dssp ----CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE---TTEE----ECTTCBGGGSCCBTT
T ss_pred cCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE---CCEE----CcCcCCHHHcCcCCC
Confidence 34567899999974433345666788999999999999 999999999999976 4764 468899999999 99
Q ss_pred CcEEEEEeCCC
Q 031156 86 GYRLHVIDLDP 96 (165)
Q Consensus 86 g~~IhV~D~~p 96 (165)
|++||++-+.|
T Consensus 87 g~ti~lmvskp 97 (98)
T 4a20_A 87 NSTITVMIKPN 97 (98)
T ss_dssp BCEEEEEECCC
T ss_pred CCEEEEEEeCC
Confidence 99999999876
No 23
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.51 E-value=9.5e-14 Score=95.45 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=62.7
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
+..++|+|++ +.+....+++++++||.+||++|+..+|+||..|+|++ .|+. .+|+.+|++||| +|++||
T Consensus 15 ~~~m~i~Vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~~i-~g~~i~ 84 (88)
T 4eew_A 15 PDSLEVLVKT--LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRV----LQDDKKLQEYNV-GGKVIH 84 (88)
T ss_dssp CCEEEEEEEE--TTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTC-TTEEEE
T ss_pred CCeEEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEE----CCCCCcHHHcCC-CCcEEE
Confidence 3467888886 44567889999999999999999999999999999975 4764 467899999999 899999
Q ss_pred EEe
Q 031156 91 VID 93 (165)
Q Consensus 91 V~D 93 (165)
++.
T Consensus 85 lv~ 87 (88)
T 4eew_A 85 LVE 87 (88)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 24
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.51 E-value=8.2e-14 Score=95.31 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=65.9
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
.++..++|+|++ +.+....+++++++||.+||++|+..+|+||..|+|++ .|+. ++|+.+|.+|+|++|++
T Consensus 8 ~~~~~m~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~----L~d~~tL~~~~i~~~~~ 78 (88)
T 3dbh_I 8 GSGGSMLIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ----MNDEKTAADYKILGGSV 78 (88)
T ss_dssp SCCCCEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEE----CCTTSBGGGGTCCTTCE
T ss_pred CCCCcEEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCeE----CCCCCcHHHcCCCCCCE
Confidence 455678888885 45567889999999999999999999999999999975 4764 46789999999999999
Q ss_pred EEEEeC
Q 031156 89 LHVIDL 94 (165)
Q Consensus 89 IhV~D~ 94 (165)
|||+-.
T Consensus 79 i~l~~r 84 (88)
T 3dbh_I 79 LHLVLR 84 (88)
T ss_dssp EEECCC
T ss_pred EEEEEe
Confidence 999763
No 25
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=7.6e-14 Score=99.70 Aligned_cols=79 Identities=11% Similarity=0.109 Sum_probs=66.0
Q ss_pred ccEEEEEEecCCC--CceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 12 ESVLLRVTHSNLK--SFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 12 ~~V~v~It~s~l~--~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
+..+|.|..++-. +...++++++++||.+||++|+..+|+||++|+|+| .|+. ++|+.+|.+|+|++|++|
T Consensus 14 g~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~---~GKi----L~D~~TL~~y~I~~gsti 86 (100)
T 1wju_A 14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVI---NKKQ----LQLGKTLEEQGVAHNVKA 86 (100)
T ss_dssp CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE---TTEE----CCTTSBHHHHTCCSSEEE
T ss_pred ceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEe---CCeE----CCCCCcHHHcCCCCCCEE
Confidence 4556666655533 457899999999999999999999999999999975 5874 478899999999999999
Q ss_pred EEEeCCCC
Q 031156 90 HVIDLDPS 97 (165)
Q Consensus 90 hV~D~~p~ 97 (165)
||+-..+.
T Consensus 87 ~vl~lrg~ 94 (100)
T 1wju_A 87 MVLELKQS 94 (100)
T ss_dssp EEECCCCC
T ss_pred EEEEECCC
Confidence 99887643
No 26
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.50 E-value=9.9e-14 Score=99.88 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=67.7
Q ss_pred cCCccEEEEEEecCCCC--ceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCC-CC
Q 031156 9 EGDESVLLRVTHSNLKS--FSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQ 85 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~--~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv-~d 85 (165)
-+++.|++.|+..++.+ ....+++.|+.||++||++|+...||||..|||+ + +|+ +.+|+++|.+||| ++
T Consensus 18 ~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli-~--ggk----ll~D~~TL~~ygI~~~ 90 (105)
T 4dbg_A 18 SPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV-I--GQR----LARDQETLHSHGVRQN 90 (105)
T ss_dssp --CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-E--TTE----EECTTCBTGGGTCCST
T ss_pred CCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEe-c--cCe----EccCcCcHHHcCCCCC
Confidence 35567888888777764 6788999999999999999999999999999975 4 454 5688999999999 59
Q ss_pred CcEEEEEeCCC
Q 031156 86 GYRLHVIDLDP 96 (165)
Q Consensus 86 g~~IhV~D~~p 96 (165)
|++||+.....
T Consensus 91 G~t~hL~l~~~ 101 (105)
T 4dbg_A 91 GDSAYLYLLSA 101 (105)
T ss_dssp TCEEEEEECCC
T ss_pred CCEEEEEEEec
Confidence 99999998653
No 27
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.50 E-value=7.9e-14 Score=97.95 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=66.5
Q ss_pred ccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCC-CccCCCCCCCC
Q 031156 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNS-RPLGFYSPLQG 86 (165)
Q Consensus 8 ~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~-~~L~~ygv~dg 86 (165)
-.++..++|+|++. .+ ..++++++++||++||++|+..+|+||+.|+|++ .|+. | +|+ .+|++|||++|
T Consensus 10 ~~~~~~~~I~Vk~~--~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~~tL~~ygI~~g 79 (94)
T 2kan_A 10 HAAVRKIHVTVKFP--SK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY---SGIE---L-ADDYRNLNEYGITEF 79 (94)
T ss_dssp CSSSCCEEEEEECS--SC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE---TTEE---E-CCTTSBHHHHTCCTT
T ss_pred ccCCCCEEEEEEcC--Cc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCEE---C-CCCcccHHHCCCCCC
Confidence 45667899999953 33 6789999999999999999999999999999975 4764 4 456 99999999999
Q ss_pred cEEEEEeCC
Q 031156 87 YRLHVIDLD 95 (165)
Q Consensus 87 ~~IhV~D~~ 95 (165)
++|||+..-
T Consensus 80 stl~lv~r~ 88 (94)
T 2kan_A 80 SEIVVFLKS 88 (94)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEEeC
Confidence 999999864
No 28
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.50 E-value=3.6e-14 Score=102.94 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=69.0
Q ss_pred cCCccEEEEEEecC--------CCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCC
Q 031156 9 EGDESVLLRVTHSN--------LKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80 (165)
Q Consensus 9 ~~~~~V~v~It~s~--------l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ 80 (165)
...+.|+|.|++++ +++....+++++++||.+||++|+..+||||+.|+|++ .|+. | +|+.+|++
T Consensus 21 ~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~---L-~D~~tL~~ 93 (115)
T 1we7_A 21 RNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY---EGIF---I-KDSNSLAY 93 (115)
T ss_dssp HCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE---TTEE---E-CTTSBHHH
T ss_pred hCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE---CCEE---C-CCCCCHHH
Confidence 34568999999887 46778899999999999999999999999999999976 4764 3 67899999
Q ss_pred CCCCCCcEEEEEeC
Q 031156 81 YSPLQGYRLHVIDL 94 (165)
Q Consensus 81 ygv~dg~~IhV~D~ 94 (165)
|+|++|++|||+-.
T Consensus 94 y~i~~g~~i~lv~r 107 (115)
T 1we7_A 94 YNMASGAVIHLALK 107 (115)
T ss_dssp HTCCSSCEEEEEEC
T ss_pred CCCCCCCEEEEEEE
Confidence 99999999999874
No 29
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.50 E-value=4.4e-14 Score=97.65 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=64.3
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
+.++|+|++. ++....++++++.||++||++|+..+|+||+.|+|++ .|+. .+|+.+|++|||++|++|||
T Consensus 3 ~~m~I~Vk~~--~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~----L~D~~tL~~~~I~~g~~i~l 73 (88)
T 2hj8_A 3 EPLSILVRNN--KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKP----LEDQLPLGEYGLKPLSTVFM 73 (88)
T ss_dssp CEEEEEEEET--TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES---SSSC----CCTTSBHHHHHCSTTCEEEE
T ss_pred ccEEEEEECC--CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEE----CCCCCcHHHcCCCCCCEEEE
Confidence 3578888863 4567889999999999999999999999999999965 4663 46789999999999999999
Q ss_pred EeCC
Q 031156 92 IDLD 95 (165)
Q Consensus 92 ~D~~ 95 (165)
+...
T Consensus 74 ~~~~ 77 (88)
T 2hj8_A 74 NLRL 77 (88)
T ss_dssp EEC-
T ss_pred EEEc
Confidence 9864
No 30
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.49 E-value=1.4e-13 Score=95.15 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=61.8
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|+|++ +.+....+++++++||.+||++|+..+|+||+.|+|++ .|+. ++|+.+|++|||++|++||++-.
T Consensus 2 ~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 2 LIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ----MNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp EEEEEE--TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTSBTTTTTCCTTCEEEEECB
T ss_pred EEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE---CCeE----CCCCCcHHHcCCCCCCEEEEEEE
Confidence 567775 45567889999999999999999999999999999975 4764 46789999999999999999974
No 31
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=3.6e-14 Score=99.80 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=65.6
Q ss_pred ccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCc
Q 031156 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 8 ~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~ 87 (165)
..++..++|.|+++ +..++++++++.||.+||++|+..+||||+.|+|++ .|+. | +|. +|.+|+|++|+
T Consensus 12 ~~~~~~~~i~Vk~~---g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~---~Gk~---L-dd~-tL~~~~i~~g~ 80 (95)
T 1v86_A 12 GVGKELVDLKIIWN---KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY---KGLV---P-EDK-TLREIKVTSGA 80 (95)
T ss_dssp CCCCCCEEEEEEET---TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS---SSBC---C-SSS-BHHHHCCCTTE
T ss_pred CCCCceEEEEEEEC---CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCee---C-CcC-cHHHCCCCCCC
Confidence 44567899999953 457889999999999999999999999999999974 4663 4 444 99999999999
Q ss_pred EEEEEeCC
Q 031156 88 RLHVIDLD 95 (165)
Q Consensus 88 ~IhV~D~~ 95 (165)
+|||+.+.
T Consensus 81 ~i~lv~~~ 88 (95)
T 1v86_A 81 KIMVVGST 88 (95)
T ss_dssp EEEECCSS
T ss_pred EEEEEecc
Confidence 99999875
No 32
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.49 E-value=2.5e-13 Score=104.30 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=84.7
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
.+...++|+|++ +.+....+++++++||.+||++|+..+|+|++.|+|.+ .|+. .+|+.+|++|||.+|++
T Consensus 16 ~~~~~m~i~Vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~---~g~~----L~d~~tL~~~~i~~~~~ 86 (172)
T 3u30_A 16 PRGSHMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKEST 86 (172)
T ss_dssp ---CCEEEEEEE--TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTCBTGGGTCCTTCE
T ss_pred CCCCcEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCcc----ccccCCHhHcCCcccce
Confidence 344578888886 56668889999999999999999999999999999975 4653 47889999999999999
Q ss_pred EEEEeCCCCcccCCCccccC-CcceeeecCHHHhhcccchHHHHHHHHh
Q 031156 89 LHVIDLDPSSVTSGGWLEDT-SLVEKYTISEEEYSKRDGTFRKFKEKVL 136 (165)
Q Consensus 89 IhV~D~~p~s~~~~~~l~d~-s~veky~lsee~Y~kr~dtv~~~kk~~k 136 (165)
|||+..-+..+.-. +... ++.-.++++. .+||..+|++..
T Consensus 87 l~l~~~~~gg~~i~--Vk~~~g~~~~l~v~~------~~tV~~lK~~I~ 127 (172)
T 3u30_A 87 LHLVLRLRGGMQIF--VKTLTGKTITLEVEP------SDTIENVKAKIQ 127 (172)
T ss_dssp EEEEECCCCCEEEE--EEESSCCEEEEEECT------TCBHHHHHHHHH
T ss_pred eeeeecccccccce--eecccCcceeEEecC------CCCHHHHHHHHH
Confidence 99998765433221 2222 3333455554 599999999886
No 33
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=9.4e-14 Score=99.34 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=67.1
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
+...++|+|++ +.++...+++++++||.+||.+|+..+|+|+..|+|+| .|+. ++|+.+|++|||++|++|
T Consensus 20 ~~~~m~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~ygI~~g~ti 90 (106)
T 1ttn_A 20 SGYECQLRLRL--STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF---SGRP----LTDKMKFEELKIPKDYVV 90 (106)
T ss_dssp -CCSEEEEEEE--TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE---TTEE----CCTTSHHHHCCCSSSCEE
T ss_pred CCCeEEEEEEc--CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE---CCEE----CCCCCcHHHcCCCCCCEE
Confidence 44568899986 44567889999999999999999999999999999975 4764 468899999999999999
Q ss_pred EEEeCCC
Q 031156 90 HVIDLDP 96 (165)
Q Consensus 90 hV~D~~p 96 (165)
||+...|
T Consensus 91 ~lv~~~~ 97 (106)
T 1ttn_A 91 QVIVSQP 97 (106)
T ss_dssp EEECCCS
T ss_pred EEEEeCC
Confidence 9999765
No 34
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=6.7e-14 Score=100.29 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=63.5
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++|+|+. +.+....+++++++||.+||++|+..+|+|+..|+|+| .|+. ++|+.+|++|||++|++|||+.
T Consensus 2 m~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 2 VSLTFKN--FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY---SGKV----LQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp -CEEEEC--TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE---TTEE----CCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCEE----CCCcCCHHHcCCCCCCEEEEEE
Confidence 5677774 55668889999999999999999999999999999975 4764 4678999999999999999999
Q ss_pred CCCC
Q 031156 94 LDPS 97 (165)
Q Consensus 94 ~~p~ 97 (165)
..|.
T Consensus 73 ~~~~ 76 (106)
T 3m62_B 73 SQKK 76 (106)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8664
No 35
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=8.7e-14 Score=99.38 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=63.5
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
...++|+|+. ++++...+.++++.||++||++|+..+||||++|+|++ .|+. ++|+.+|++|||++|++||
T Consensus 26 ~~mm~I~VKt--l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~---~Gk~----L~D~~TL~dygI~~gstlh 96 (100)
T 1uh6_A 26 ATMIEVVCND--RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK---WYTI----FKDHVSLGDYEIHDGMNLE 96 (100)
T ss_dssp CCEEEEEEEC--SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCSSCBHHHHTCCTTEEEE
T ss_pred CCeEEEEEEC--CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCEE----CCCCCCHHHcCCCCCCEEE
Confidence 3468888884 55678889999999999999999999999999999975 4764 4788999999999999999
Q ss_pred EE
Q 031156 91 VI 92 (165)
Q Consensus 91 V~ 92 (165)
+.
T Consensus 97 L~ 98 (100)
T 1uh6_A 97 LY 98 (100)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 36
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2e-13 Score=96.22 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=63.9
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
.++..++|+|++ +.+....+++++++||.+||++|+..+|+|+..|+|++ .|+. ++|+.+|.+|||++|++
T Consensus 18 ~~~~~m~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~~i~~g~~ 88 (98)
T 4hcn_B 18 FQGRPMQIFVKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKEST 88 (98)
T ss_dssp ----CCEEEEEE--TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTCBSGGGTCCTTEE
T ss_pred CCCCeEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEE----CCCCCcHHHCCCCCCCE
Confidence 344578899986 34567889999999999999999999999999999975 4764 46889999999999999
Q ss_pred EEEEeC
Q 031156 89 LHVIDL 94 (165)
Q Consensus 89 IhV~D~ 94 (165)
|||+-.
T Consensus 89 i~l~~r 94 (98)
T 4hcn_B 89 LHLVLR 94 (98)
T ss_dssp EEEECB
T ss_pred EEEEEe
Confidence 999863
No 37
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.47 E-value=2.4e-13 Score=90.02 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=60.9
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|+|++ +.+....+++++++||++||++|+..+|+||+.|+|.+ .|+. .+|+.+|++||+++|++|||+-.
T Consensus 2 ~i~vk~--~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~----L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 2 LIKVKT--LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQ----MNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp EEEEEC--TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEE----CCCCCcHHHcCCCCCCEEEEEEe
Confidence 567774 34567889999999999999999999999999999975 4764 36789999999999999999864
No 38
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.47 E-value=4.4e-13 Score=92.33 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=62.3
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
-+.+.+.++. .+...++++++++||++||++|+..+|+||+.|+|.+ .|+. ++|+.+|++|||++|++|+
T Consensus 10 ~~~~~~~~~~---~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~----L~D~~tL~~~gi~~g~~l~ 79 (85)
T 2kd0_A 10 HSTIKLTVKF---GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF---KGKV----LVETSTLKQSDVGSGAKLM 79 (85)
T ss_dssp CCCEEEEEEE---TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE---TTEE----CCTTCBTTTTTCCTTEEEE
T ss_pred CCcEEEEEEE---CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCeE----CCCcCCHHHCCCCCCCEEE
Confidence 3456666663 4557889999999999999999999999999999964 4763 3678999999999999999
Q ss_pred EEeC
Q 031156 91 VIDL 94 (165)
Q Consensus 91 V~D~ 94 (165)
|+.+
T Consensus 80 l~~s 83 (85)
T 2kd0_A 80 LMAS 83 (85)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9874
No 39
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=3.1e-13 Score=91.60 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=63.2
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
.++|+|++ +.+....+++++++||.+||++|+..+|+||..|+|++ .|+. .+|+.+|.+|+|++|++|||+
T Consensus 3 ~m~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~---~g~~----L~d~~tL~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 3 HMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKWSTLFLL 73 (85)
T ss_dssp CEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTSBTGGGTCCTTCEEEEE
T ss_pred eEEEEEEc--CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEE----CCCCCCHHHcCCCCCCEEEEE
Confidence 57788885 34567889999999999999999999999999999975 4663 367899999999999999998
Q ss_pred eC
Q 031156 93 DL 94 (165)
Q Consensus 93 D~ 94 (165)
-.
T Consensus 74 ~r 75 (85)
T 3mtn_B 74 LR 75 (85)
T ss_dssp CC
T ss_pred EE
Confidence 74
No 40
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=2.2e-13 Score=92.39 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=62.3
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
.++|+|++ +.+....+++++++||.+||++|+..+|+||+.|+|++ .|+. .+|+.+|.+|+|++|++|||+
T Consensus 3 ~m~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~---~g~~----L~d~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 3 HMRIVVKT--LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp -CEEEEEC--GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TBEE----CCTTCBTTTTTCCTTCEEEEE
T ss_pred eEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCeE----CCCCCCHHHCCCCCCCEEEEE
Confidence 46788875 34557889999999999999999999999999999975 4653 467889999999999999998
Q ss_pred eC
Q 031156 93 DL 94 (165)
Q Consensus 93 D~ 94 (165)
-.
T Consensus 74 ~r 75 (85)
T 3n3k_B 74 LK 75 (85)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 41
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.46 E-value=2.7e-13 Score=97.62 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=65.8
Q ss_pred CCccEEEEEEecCC-CCceEEEEecC-CCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCc
Q 031156 10 GDESVLLRVTHSNL-KSFSADVRFPL-QMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 10 ~~~~V~v~It~s~l-~~~~~e~r~~~-~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~ 87 (165)
..+.++|+|++.+. ++...++++++ ++||.+||++|+..+|||++.|+|++ .|+ +++|+.+|++|||++|+
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk----~L~D~~tL~~y~I~~g~ 96 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG---KAG----FLKDNMSLAHYNVGAGE 96 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC---SSS----BCCTTSBTTTTTCSSSC
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCE----ECCCCCcHHHCCCCCCC
Confidence 34578999986421 45678899998 99999999999999999999999975 465 35788999999999999
Q ss_pred EEEEEeC
Q 031156 88 RLHVIDL 94 (165)
Q Consensus 88 ~IhV~D~ 94 (165)
+|||+-.
T Consensus 97 ~l~l~~r 103 (111)
T 1we6_A 97 ILTLSLR 103 (111)
T ss_dssp EEEEECS
T ss_pred EEEEEEE
Confidence 9999864
No 42
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.46 E-value=5e-13 Score=101.04 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=83.8
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++|+|++ +.+....++++++.||.+||++|+..+|+||..|+|++|. .|+. .+|+.+|++|||.+|++||++.
T Consensus 3 m~i~vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~-~g~~----L~d~~tL~~y~i~~~~~l~l~~ 75 (159)
T 3rt3_B 3 WDLTVKM--LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP-SGVA----LQDRVPLASQGLGPGSTVLLVV 75 (159)
T ss_dssp CEEEEEE--TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET-TCCB----CCTTSCGGGGTCCTTCEEEEEE
T ss_pred eEEEEEE--CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC-CCCC----CCCCCCHHHcCCCCCCEEEEEc
Confidence 5677775 4566888999999999999999999999999999998452 2553 4789999999999999999999
Q ss_pred CC-CCcccCCCccccC-CcceeeecCHHHhhcccchHHHHHHHHh
Q 031156 94 LD-PSSVTSGGWLEDT-SLVEKYTISEEEYSKRDGTFRKFKEKVL 136 (165)
Q Consensus 94 ~~-p~s~~~~~~l~d~-s~veky~lsee~Y~kr~dtv~~~kk~~k 136 (165)
.. |..+.-. .... ++.-.++++.. +||...|++..
T Consensus 76 ~~~~~~m~i~--vk~~~g~~~~~~v~~~------~tV~~lK~~i~ 112 (159)
T 3rt3_B 76 DKSDEPLSIL--VRNNKGRSSTYEVRLT------QTVAHLKQQVS 112 (159)
T ss_dssp CCCCCCEEEE--EECTTSCEEEEEECTT------SBHHHHHHHHH
T ss_pred cCCCCcEEEE--EECCCCCEEEEEeCCC------CCHHHHHHHHH
Confidence 84 4333211 2232 34345666655 99999999886
No 43
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=2.7e-13 Score=93.21 Aligned_cols=76 Identities=11% Similarity=0.193 Sum_probs=64.6
Q ss_pred CCccEEEEEEecCCCC-ceEEE-EecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCc
Q 031156 10 GDESVLLRVTHSNLKS-FSADV-RFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~-~~~e~-r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~ 87 (165)
.+..++|+|++. .+ ....+ ++++++||.+||++|+..+|+|+..|+|++ .|+. .+|+.+|.+|||.+|+
T Consensus 4 ~~~~m~i~Vk~~--~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~gk~----L~d~~tL~~~~i~~g~ 74 (89)
T 1wy8_A 4 GSSGMWIQVRTI--DGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY---RGKQ----LENGYTLFDYDVGLND 74 (89)
T ss_dssp CSSCEEEEEEET--TCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE---TTEE----CCSSSBHHHHTCCTTC
T ss_pred CCCcEEEEEEEC--CCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCeE----CCCCCCHHHCCCCCCC
Confidence 446789999863 44 46788 599999999999999999999999999975 4664 3678999999999999
Q ss_pred EEEEEeC
Q 031156 88 RLHVIDL 94 (165)
Q Consensus 88 ~IhV~D~ 94 (165)
+|||+-.
T Consensus 75 ~i~l~~~ 81 (89)
T 1wy8_A 75 IIQLLVR 81 (89)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9999874
No 44
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=96.81 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=61.4
Q ss_pred ccccccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCC
Q 031156 4 RLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP 83 (165)
Q Consensus 4 ~~~~~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv 83 (165)
+-.++.....++|+|++ +....+++++++||.+||++|+..+|+||+.|+|++ .|+. ++|+.+|.+|+|
T Consensus 10 ~~~~~~~~~~m~I~Vk~----g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~y~I 78 (93)
T 2l7r_A 10 HSSGLVPRGSMQLFVRA----QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL---AGAP----LEDEATLGQCGV 78 (93)
T ss_dssp ----------CEEEEES----SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE---TTEE----CCTTSBHHHHTC
T ss_pred cccCCCCCCcEEEEEEC----CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE---CCEE----CCCCCcHHHCCC
Confidence 33445566678899995 457889999999999999999999999999999975 4764 368899999999
Q ss_pred CCCcEEEEEe
Q 031156 84 LQGYRLHVID 93 (165)
Q Consensus 84 ~dg~~IhV~D 93 (165)
++|++|||+-
T Consensus 79 ~~gstI~lv~ 88 (93)
T 2l7r_A 79 EALTTLEVAG 88 (93)
T ss_dssp CSSCEEEEEC
T ss_pred CCCCEEEEEE
Confidence 9999999985
No 45
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.45 E-value=6.3e-13 Score=98.88 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=80.1
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|.|++ ..+...++++++++||.+||++|+..+|+||+.|+|.+ .|+. | +|+.+|++||+.+|++|||+..
T Consensus 2 ~i~vk~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~---~g~~---L-~d~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 2 QIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp EEEEEE--TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEe--CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE---CCeE---C-cCcccHHHhccCCCCeeEEEee
Confidence 567775 34557889999999999999999999999999999975 3653 3 6789999999999999999998
Q ss_pred CCCcccCCCccccC-CcceeeecCHHHhhcccchHHHHHHHHh
Q 031156 95 DPSSVTSGGWLEDT-SLVEKYTISEEEYSKRDGTFRKFKEKVL 136 (165)
Q Consensus 95 ~p~s~~~~~~l~d~-s~veky~lsee~Y~kr~dtv~~~kk~~k 136 (165)
.|..+.-. +... ++.-.++++. .+||..+|++..
T Consensus 73 ~~~~~~i~--Vk~~~g~~~~~~v~~------~~tv~~lK~~i~ 107 (152)
T 3b08_A 73 LRGGMQIF--VKTLTGKTITLEVEP------SDTIENVKAKIQ 107 (152)
T ss_dssp CTTCEEEE--EEESSSCEEEEEECT------TCBHHHHHHHHH
T ss_pred ccccccee--eeecCCCEEEEEeCC------CCcHHHHHHHHH
Confidence 66433211 2222 2222455544 499999999776
No 46
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=1.3e-13 Score=96.37 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=65.9
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
++..++|+|++. +...++++++++||.+||++|+..+|+|+..|+|+| .|+. ++|+.+|.+|||++|++|
T Consensus 14 ~~~~m~i~Vk~~---g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~----L~D~~tL~~~gi~~g~~i 83 (96)
T 1wx8_A 14 SSRIIRVSVKTP---QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF---TGKI----LRDQDILSQRGILDGSTV 83 (96)
T ss_dssp CSCEEEEEEECS---SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE---TTEE----CCTTSCHHHHTCCTTEEE
T ss_pred CCCcEEEEEEEC---CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEE----CCCcCCHHHCCCCCCCEE
Confidence 346789999964 567889999999999999999999999999999975 4763 367899999999999999
Q ss_pred EEEeCC
Q 031156 90 HVIDLD 95 (165)
Q Consensus 90 hV~D~~ 95 (165)
||+...
T Consensus 84 ~l~~~~ 89 (96)
T 1wx8_A 84 HVVVRS 89 (96)
T ss_dssp ECCBCC
T ss_pred EEEEeC
Confidence 998864
No 47
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.45 E-value=5.1e-13 Score=88.42 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=60.6
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|.|++. .+....+++++++||++||++|+..+|+|++.|+|.+ .|+. | +|+.+|++||+.+|++|||.-.
T Consensus 2 ~i~vk~~--~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~---L-~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 2 QIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp EEEEEET--TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE---C-CTTCBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEcC--CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCeE---C-CCCCcHHHcCCCCCCEEEEEEe
Confidence 5677753 3457889999999999999999999999999999975 4664 3 6789999999999999999864
No 48
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.44 E-value=4.7e-13 Score=96.57 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=63.2
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
..++|+|++ +.+....+++++++||.+||.+|+..+|+||..|+|++ .|+. +.|+.+|.+|||++|++|||
T Consensus 34 ~~m~I~Vk~--~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~gI~~gs~I~l 104 (111)
T 3vdz_A 34 LAMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHL 104 (111)
T ss_dssp GCEEEEEEC--SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTTTTTCCTTCEEEE
T ss_pred ccEEEEEEe--CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE---CCEE----CCCCCcHHHCCCCCCCEEEE
Confidence 356777764 55668889999999999999999999999999999975 4764 46788999999999999999
Q ss_pred EeC
Q 031156 92 IDL 94 (165)
Q Consensus 92 ~D~ 94 (165)
+-.
T Consensus 105 ~~r 107 (111)
T 3vdz_A 105 VLR 107 (111)
T ss_dssp EEC
T ss_pred EEe
Confidence 864
No 49
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=5.6e-13 Score=98.36 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=65.2
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
+..++|+|++. +...++++++++||.+||.+|+..+|||++.|+|+| .|+. | +|+.+|.+|||++|++||
T Consensus 30 ~~~m~I~Vk~~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~---L-~D~~tL~dygI~~gstI~ 99 (125)
T 1j8c_A 30 PKIIKVTVKTP---KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF---AGKI---L-KDQDTLIQHGIHDGLTVH 99 (125)
T ss_dssp CCCEEEEEECS---SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE---TTEE---E-STTSCGGGTTCSSSEEEE
T ss_pred CCcEEEEEEeC---CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE---CCEE---c-CCCCCHHHcCCCCCCEEE
Confidence 45789999963 567889999999999999999999999999999975 4764 3 678999999999999999
Q ss_pred EEeCC
Q 031156 91 VIDLD 95 (165)
Q Consensus 91 V~D~~ 95 (165)
|+...
T Consensus 100 lv~~~ 104 (125)
T 1j8c_A 100 LVIKR 104 (125)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 99964
No 50
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.44 E-value=5.5e-13 Score=92.89 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=62.2
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++|+|++ +.+....+++++++||.+||++|+..+|+|+..|+|++ .|+. ++|+.+|.+|||.+|++|||+-
T Consensus 2 m~i~vk~--~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~---~G~~----L~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 2 MQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp CEEEEEE--TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTGGGTCCTTCEEEEEE
T ss_pred cEEEEEe--CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE---CCEE----CCCCCcHHHcCCCCCCEEEEEE
Confidence 4677876 34567889999999999999999999999999999975 4764 4678899999999999999997
Q ss_pred C
Q 031156 94 L 94 (165)
Q Consensus 94 ~ 94 (165)
.
T Consensus 73 r 73 (96)
T 3k9o_B 73 R 73 (96)
T ss_dssp C
T ss_pred E
Confidence 4
No 51
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=6.1e-13 Score=91.94 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=61.4
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++|.|.. +.+....+++++++||++||++|+..+|+||+.|+|++ .|+. | +|+.+|++|||++|++|||+-
T Consensus 10 ~~i~v~~--~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 10 LQLFIKT--LTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp CEEEEEE--TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEE---C-CTTSBSGGGTCCTTCEEEEEC
T ss_pred eEEEEEe--CCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCcHHHcCCCCCCEEEEEE
Confidence 4566665 55678899999999999999999999999999999975 4764 3 678999999999999999986
Q ss_pred C
Q 031156 94 L 94 (165)
Q Consensus 94 ~ 94 (165)
.
T Consensus 81 r 81 (88)
T 1sif_A 81 R 81 (88)
T ss_dssp -
T ss_pred e
Confidence 4
No 52
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=5.1e-13 Score=94.79 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=66.2
Q ss_pred ccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCc
Q 031156 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 8 ~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~ 87 (165)
...+..++|+|++. .++ .++++++++||.+||++|+..+|+|++.|+|++ .|+. ++|+.+|.+|||++|+
T Consensus 17 ~~~~~~m~I~Vk~~--~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~ygI~~gs 86 (100)
T 1yqb_A 17 RGSPHLIKVTVKTP--KDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKI----LKDPDSLAQCGVRDGL 86 (100)
T ss_dssp SCCTTEEEEEEECS--SCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBHHHHTCCTTC
T ss_pred CCCCCeEEEEEEcC--CCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEE----CCCcCcHHHCCCCCCC
Confidence 44566899999963 333 589999999999999999999999999999975 4764 4678999999999999
Q ss_pred EEEEEeCC
Q 031156 88 RLHVIDLD 95 (165)
Q Consensus 88 ~IhV~D~~ 95 (165)
+|||+...
T Consensus 87 tI~l~~r~ 94 (100)
T 1yqb_A 87 TVHLVIKR 94 (100)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 99999864
No 53
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=3.6e-13 Score=93.79 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=64.2
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHH--CCCCCceEEEEEcCCCCeeeccCCCCCccCCC--CCCC
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKC--GTSVNSMSLELYDDTNTKVAALTDNSRPLGFY--SPLQ 85 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~t--Gip~~~q~L~l~~~~g~~i~~l~dD~~~L~~y--gv~d 85 (165)
+.+.++|+|++.....+..++.+++++||.+||++|+..+ |+|++.|+|++ .|+. ++|+.+|.+| +|++
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~---~Gk~----L~D~~tL~~~~~~i~~ 76 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY---SGKL----LLDHQCLRDLLPKQEK 76 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEE----CCSSSCHHHHSCSSSC
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE---CCEE----CcCcCCHHHHhcCCCC
Confidence 3456889999654332356777889999999999999999 99999999975 4764 4677899999 9999
Q ss_pred CcEEEEEeC
Q 031156 86 GYRLHVIDL 94 (165)
Q Consensus 86 g~~IhV~D~ 94 (165)
|++||++..
T Consensus 77 ~~~i~lv~~ 85 (93)
T 1wgd_A 77 RHVLHLVCN 85 (93)
T ss_dssp SEEEEEECC
T ss_pred CCEEEEEeC
Confidence 999999874
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.6e-12 Score=93.58 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=64.9
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
+...++|+|++ +.+....+++++++||.+||++|+..+|+|++.|+|.+ .|+. .+|+.+|++||+++|++|
T Consensus 32 ~~~~m~I~Vk~--~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~gI~~gs~I 102 (111)
T 2ojr_A 32 ELLAMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTL 102 (111)
T ss_dssp GSSCEEEEEEC--SSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEE----CCSSCBTTTTTCCTTCEE
T ss_pred CCCeEEEEEEc--CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE---CCEE----CCCCCcHHHcCCCCCCEE
Confidence 34578899985 34567889999999999999999999999999999975 4764 367899999999999999
Q ss_pred EEEeC
Q 031156 90 HVIDL 94 (165)
Q Consensus 90 hV~D~ 94 (165)
||+-.
T Consensus 103 ~l~~r 107 (111)
T 2ojr_A 103 HLVLR 107 (111)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99863
No 55
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.41 E-value=3.4e-13 Score=96.80 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=62.9
Q ss_pred cEEEEEEecCCCCceEEEEec-CCCCHHHHHHHHHHHHCCCCCceEEEEEcCC--CC------eeeccCCCCCccCCCCC
Q 031156 13 SVLLRVTHSNLKSFSADVRFP-LQMSVESVKDKLWRKCGTSVNSMSLELYDDT--NT------KVAALTDNSRPLGFYSP 83 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~-~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~--g~------~i~~l~dD~~~L~~ygv 83 (165)
.+.|.|++. .+.. .+.++ +++||.+||++|+.++||||..|+|++.... ++ .+..+.+|+++|.+|||
T Consensus 7 ~M~irvrs~--~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 7 GTMLRVRSR--DGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp CEEEEEECS--SCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred eEEEEEECC--CCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 366888853 4434 67889 9999999999999999999999999764210 00 22223689999999999
Q ss_pred CCCcEEEEEeCCC
Q 031156 84 LQGYRLHVIDLDP 96 (165)
Q Consensus 84 ~dg~~IhV~D~~p 96 (165)
++|++|||++...
T Consensus 84 ~~G~~L~l~~~~~ 96 (107)
T 1wf9_A 84 AHGSMVYLAYEGE 96 (107)
T ss_dssp CTTCEEECCCSSC
T ss_pred CCCCEEEEEeCCC
Confidence 9999999999743
No 56
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.40 E-value=1.6e-12 Score=91.27 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=62.3
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|.|+. +.+....++++++.||++||.+|+..+|+||+.|+|.+ .|+. | +|+.+|++|||++|++|||+..
T Consensus 2 ~I~Vk~--~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~---~Gk~---L-~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 2 QIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ---L-EDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp EEEEEE--TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE---TTEE---C-CTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEE---C-CCCCCHHHcCCCCCCEEEEEEe
Confidence 567775 34457889999999999999999999999999999975 4764 3 6789999999999999999987
Q ss_pred CC
Q 031156 95 DP 96 (165)
Q Consensus 95 ~p 96 (165)
.+
T Consensus 73 ~~ 74 (98)
T 1yx5_B 73 LR 74 (98)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 57
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.8e-13 Score=94.29 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=60.6
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHH-HHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCC-CCCcEEEE
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKL-WRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP-LQGYRLHV 91 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KL-e~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv-~dg~~IhV 91 (165)
++|+|++.....+..++.++++.||.+||++| +..+|+||++|||+| .|+. +.|+.+|++|+| .+|++|+|
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~y~I~~~~stl~v 74 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKV----LHDNLFLSDLKVTPANSTITV 74 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEE---TTEE----CCTTCBHHHHCCCGGGCEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEE---CCEE----CcCcCCHHHcCCCCCCCEEEE
Confidence 57888864333234445566999999999999 999999999999975 5774 478899999999 79999999
Q ss_pred EeC
Q 031156 92 IDL 94 (165)
Q Consensus 92 ~D~ 94 (165)
.-+
T Consensus 75 ~~~ 77 (87)
T 2lxa_A 75 MIK 77 (87)
T ss_dssp EEC
T ss_pred EcC
Confidence 986
No 58
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=1.2e-12 Score=93.39 Aligned_cols=75 Identities=11% Similarity=0.179 Sum_probs=64.0
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
+..++|+|++. .++ .++++++++||.+||++|+..+|||+..|+|+| .|+. ++|+.+|.+|||++|++||
T Consensus 15 ~~~m~I~Vk~~--~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~~gi~~g~~i~ 84 (106)
T 1wx7_A 15 PHLIKVTVKTP--KDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKI----LKDPDSLAQCGVRDGLTVH 84 (106)
T ss_dssp SSEEEEEEECS--SCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE---TTEE----CCTTSCHHHHTCCTTEEEE
T ss_pred CceEEEEEEeC--CCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEE----CCCcCcHHHcCCCCCCEEE
Confidence 45789999864 333 589999999999999999999999999999965 4663 3678999999999999999
Q ss_pred EEeCC
Q 031156 91 VIDLD 95 (165)
Q Consensus 91 V~D~~ 95 (165)
|+..-
T Consensus 85 l~~~~ 89 (106)
T 1wx7_A 85 LVIKR 89 (106)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99853
No 59
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.1e-12 Score=93.62 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=64.5
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
..+|.|+. +.+...++++++++||.+||++|+..+|+||+.|+|++ .|+. ++|+.+|++|||++|++|||+
T Consensus 9 ~~~i~vk~--l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~----L~D~~tL~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 9 EFQIFAKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW---AGKQ----LEDGRTLSDYNIQRESTLHLV 79 (114)
T ss_dssp CCEEEEEE--TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTCBTTTTTCCSSCEEEEE
T ss_pred cEEEEEEe--CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCEE----CCCCCcHHHCCCCCCCEEEEE
Confidence 45677775 56678899999999999999999999999999999965 4764 368899999999999999999
Q ss_pred eCCC
Q 031156 93 DLDP 96 (165)
Q Consensus 93 D~~p 96 (165)
..-+
T Consensus 80 ~~~~ 83 (114)
T 2kdi_A 80 LRLR 83 (114)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 8653
No 60
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=1.3e-12 Score=91.14 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=65.0
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
...++|.|++ +.+....+++++++||.+||++|+..+ +..|+|+| .|+. |.|++.+|.+|||++|++||
T Consensus 5 ~~~m~i~Vk~--~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~---~Gk~---L~D~~~tL~~y~i~~g~~i~ 73 (95)
T 1wia_A 5 SSGINVRLKF--LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY---QGRL---LQDPARTLSSLNITNNCVIH 73 (95)
T ss_dssp CCSEEEEEEE--TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE---TTEE---CCCSSCBTTTTTCCTTEEEE
T ss_pred CCeEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE---CCEE---ccCCcCCHHHcCCCCCCEEE
Confidence 4578999986 445678899999999999999999998 89999975 4764 44444999999999999999
Q ss_pred EEeCCCCcc
Q 031156 91 VIDLDPSSV 99 (165)
Q Consensus 91 V~D~~p~s~ 99 (165)
|+...|.+.
T Consensus 74 l~~~~~~~~ 82 (95)
T 1wia_A 74 CHRSPPGAA 82 (95)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999877554
No 61
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=8e-13 Score=94.69 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=66.7
Q ss_pred ccCCccEEEEEEecCCC-CceEEEEecC---------CCCHHHHHHHHHHHH--CCCCCc-eEEEEEcCCCCeeeccCCC
Q 031156 8 IEGDESVLLRVTHSNLK-SFSADVRFPL---------QMSVESVKDKLWRKC--GTSVNS-MSLELYDDTNTKVAALTDN 74 (165)
Q Consensus 8 ~~~~~~V~v~It~s~l~-~~~~e~r~~~---------~~TV~~LK~KLe~~t--Gip~~~-q~L~l~~~~g~~i~~l~dD 74 (165)
.++.+.++|.|++.... .....+.|++ ++||.+||++|+..+ |+|+.. |+|+| .|+. | +|
T Consensus 7 ~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~---~Gk~---L-~D 79 (107)
T 1x1m_A 7 GMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY---CGRK---L-KD 79 (107)
T ss_dssp CCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE---TTEE---C-CT
T ss_pred CccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE---CCeE---C-CC
Confidence 35566789999975540 1356677555 599999999999999 999999 99975 4764 3 67
Q ss_pred CCccCCCCCCCCcEEEEEeCCCC
Q 031156 75 SRPLGFYSPLQGYRLHVIDLDPS 97 (165)
Q Consensus 75 ~~~L~~ygv~dg~~IhV~D~~p~ 97 (165)
+.+|.+|||++|++|||+...++
T Consensus 80 ~~tL~~y~i~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 80 DQTLDFYGIQPGSTVHVLRKSWS 102 (107)
T ss_dssp TCBHHHHTCCTTCEEEEEESSCC
T ss_pred CCcHHHcCCCCCCEEEEEeCCCC
Confidence 89999999999999999997653
No 62
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.38 E-value=1.3e-12 Score=87.93 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=62.7
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
.++|.|++ +.+....++++++.||++||++++...|+|+++|+|+| +|+. ..|+.+|++|++++|++|||+
T Consensus 3 ~m~i~vk~--~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~---~G~~----L~d~~tl~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 3 YIKLKVIG--QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQR----IADNHTPKELGMEEEDVIEVY 73 (79)
T ss_dssp EEEEEEEC--TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTCCHHHHTCCTTEEEEEE
T ss_pred eEEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEE----eCCCCCHHHcCCCCCCEEEEE
Confidence 46777875 45567889999999999999999999999999999965 5764 367899999999999999998
Q ss_pred eC
Q 031156 93 DL 94 (165)
Q Consensus 93 D~ 94 (165)
-.
T Consensus 74 ~~ 75 (79)
T 2uyz_B 74 QE 75 (79)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 63
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.37 E-value=1.4e-12 Score=91.86 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=64.7
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
+...++|+|++ +.+....+++.++.||.+||++|+..+|||+++|+|+| +|+. +.|+.+|.+|+|++|++|
T Consensus 18 ~~~~m~I~Vk~--~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif---~Gk~----L~d~~tl~dy~i~~g~~I 88 (97)
T 1wyw_B 18 EGEYIKLKVIG--QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQR----IADNHTPKELGMEEEDVI 88 (97)
T ss_dssp -CCEEEEEEEC--TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTCCHHHHTCCTTCEE
T ss_pred CCCcEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCeE----cCCCCCHHHCCCCCCCEE
Confidence 34568888885 55667889999999999999999999999999999965 5774 367899999999999999
Q ss_pred EEEeC
Q 031156 90 HVIDL 94 (165)
Q Consensus 90 hV~D~ 94 (165)
||+-.
T Consensus 89 ~l~~~ 93 (97)
T 1wyw_B 89 EVYQE 93 (97)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 99864
No 64
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.37 E-value=3.7e-12 Score=93.31 Aligned_cols=87 Identities=11% Similarity=0.018 Sum_probs=67.7
Q ss_pred EEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCC-------CcE
Q 031156 16 LRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQ-------GYR 88 (165)
Q Consensus 16 v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~d-------g~~ 88 (165)
|.|.+.. .+..+++.++.||.+||++|+.++||||++|||++ +|+ +++|+++|++|||+. +++
T Consensus 5 l~Ikr~k---tTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~---~Gk----~LeD~kTL~dy~I~~~ta~~q~~at 74 (118)
T 4ajy_B 5 LMIRRHK---TTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYK---DDQ----LLDDGKTLGECGFTSQTARPQAPAT 74 (118)
T ss_dssp EEEEEBT---EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTE----ECCTTSBTTTTTCCGGGSBTTBCEE
T ss_pred EEEecCC---EEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe---CCe----ECCCcCCHHHcCCCcCcccCCCCCE
Confidence 4555432 26778999999999999999999999999999974 576 468999999999999 999
Q ss_pred EEEEeCCCCcccCCCccccCCcceeeecCHH
Q 031156 89 LHVIDLDPSSVTSGGWLEDTSLVEKYTISEE 119 (165)
Q Consensus 89 IhV~D~~p~s~~~~~~l~d~s~veky~lsee 119 (165)
||++... .|.|+++.-. .|.-++|
T Consensus 75 l~Lvlr~------~~~fE~l~i~-p~s~pp~ 98 (118)
T 4ajy_B 75 VGLAFRA------DDTFEALCIE-PFSSPPE 98 (118)
T ss_dssp EEEEECC------SSCCCCCCBC-CCCCCCC
T ss_pred EEEEEec------CCCccceEEe-cCCCCCC
Confidence 9999864 2456665432 5544443
No 65
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.4e-12 Score=91.94 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=63.6
Q ss_pred CCccEEEEEEecCCCCceE-EEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 10 GDESVLLRVTHSNLKSFSA-DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~-e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
++..++|.|++. +..+ +++++++.||.+||++|+..+|||+++|+|++ .|+. | .|+ +|.+|||++|++
T Consensus 4 ~~~~m~i~Vk~~---g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~---~Gk~---L-~D~-tL~~~~I~~g~~ 72 (96)
T 1wgg_A 4 GSSGYSVTVKWG---KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV---KGGT---L-KDD-DWGNIKMKNGMT 72 (96)
T ss_dssp CCCEEEEEEEET---TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE---TTEE---C-CSS-CCCSCCCCSSCE
T ss_pred CCcEEEEEEEEC---CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCcC---C-CCC-CHHHCCCCCCCE
Confidence 456789999963 4567 69999999999999999999999999999975 4764 4 455 999999999999
Q ss_pred EEEEeCC
Q 031156 89 LHVIDLD 95 (165)
Q Consensus 89 IhV~D~~ 95 (165)
|||+-+.
T Consensus 73 i~l~~~~ 79 (96)
T 1wgg_A 73 VLMMGSA 79 (96)
T ss_dssp EECCCCC
T ss_pred EEEEecc
Confidence 9998764
No 66
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.35 E-value=9.6e-13 Score=93.61 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=59.9
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHH-HCCCC-CceEEEEEcCCCCeeeccCCCCCccCCC--CCC
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK-CGTSV-NSMSLELYDDTNTKVAALTDNSRPLGFY--SPL 84 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~-tGip~-~~q~L~l~~~~g~~i~~l~dD~~~L~~y--gv~ 84 (165)
.+.+.++|+|+..........+++++++||++||++|+.. .|+|| ++|||+| .|+. +.|+.+|++| +|+
T Consensus 19 ~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy---~Gk~----L~D~~tL~~y~~~I~ 91 (99)
T 2kdb_A 19 FQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY---SGRL----LPDHLQLKDILRKQD 91 (99)
T ss_dssp ----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE---TTEE----ECTTSBTHHHHTTTC
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE---CCEE----CCCCCCHHHHhcCCC
Confidence 3456799999964333224678889999999999999985 67775 9999975 5874 3688999999 999
Q ss_pred CCcEEEEE
Q 031156 85 QGYRLHVI 92 (165)
Q Consensus 85 dg~~IhV~ 92 (165)
+|++||++
T Consensus 92 ~~~tihLv 99 (99)
T 2kdb_A 92 EYHMVHLV 99 (99)
T ss_dssp SEEEEEEC
T ss_pred CCCEEEeC
Confidence 99999985
No 67
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.35 E-value=1.1e-12 Score=91.13 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=63.6
Q ss_pred CccEEEEEEecCCCCceEEE-EecCCCCHHHHHHHHHHHHCCCCCceEEE---EEcCCCCeeeccCCCCCccCCCCCCCC
Q 031156 11 DESVLLRVTHSNLKSFSADV-RFPLQMSVESVKDKLWRKCGTSVNSMSLE---LYDDTNTKVAALTDNSRPLGFYSPLQG 86 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~-r~~~~~TV~~LK~KLe~~tGip~~~q~L~---l~~~~g~~i~~l~dD~~~L~~ygv~dg 86 (165)
+..++|.|++. +..+.+ .++++.||.+||++|+..+||||+.|+|. + .|+. .+|+.+|.+|||++|
T Consensus 5 ~~~m~i~Vk~~---g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~---~Gk~----L~D~~~L~~~~i~~g 74 (90)
T 1v5t_A 5 SSGLPIIVKWG---GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKV---KGKP----AENDVKLGALKLKPN 74 (90)
T ss_dssp CCSCCEEEEET---TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEE---TTEE----CCTTSBHHHHTCCTT
T ss_pred CceEEEEEEEC---CEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeecc---CCcC----cCCCCCHHHcCCCCC
Confidence 45688888853 456788 89999999999999999999999999996 4 4653 367899999999999
Q ss_pred cEEEEEeCC
Q 031156 87 YRLHVIDLD 95 (165)
Q Consensus 87 ~~IhV~D~~ 95 (165)
++||++-+.
T Consensus 75 ~~l~l~~~~ 83 (90)
T 1v5t_A 75 TKIMMMGTR 83 (90)
T ss_dssp EEEEEECCC
T ss_pred CEEEEEecC
Confidence 999998753
No 68
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.34 E-value=5.2e-12 Score=95.41 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=62.8
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
+.++|+|++ +++....++++++.||++||++|+..+|+||+.|+|++ .|+. ++|+.+|++|||++|++||+
T Consensus 80 ~~m~i~vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~----L~d~~tL~~y~i~~g~~l~l 150 (159)
T 3rt3_B 80 EPLSILVRN--NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKP----LEDQLPLGEYGLKPLSTVFM 150 (159)
T ss_dssp CCEEEEEEC--TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTSBGGGGTCCTTCEEEE
T ss_pred CcEEEEEEC--CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE---CCee----cCCCCCHHHcCCCCCCEEEE
Confidence 345566654 55678889999999999999999999999999999975 5764 46789999999999999999
Q ss_pred EeC
Q 031156 92 IDL 94 (165)
Q Consensus 92 ~D~ 94 (165)
+-.
T Consensus 151 ~~r 153 (159)
T 3rt3_B 151 NLR 153 (159)
T ss_dssp EEC
T ss_pred EEe
Confidence 864
No 69
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=92.34 Aligned_cols=74 Identities=22% Similarity=0.208 Sum_probs=62.0
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
++.+.|+ ++++...++++++.||++||++|+..|||||.+|+|.++ +.|+ + +|+.+|++|+|+.|++||++
T Consensus 9 m~~~~vk---~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~-~~gk----L-~D~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 9 MLDFRVE---YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGW-KTGD----V-EDSTVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp EEEEEEE---CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECC-SSSC----C-CTTSBHHHHCCCSEEEEEEC
T ss_pred eEEEEEE---eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEcc-CCCC----C-CCcCCHHHcCCCCCCEEEEE
Confidence 5667777 355678899999999999999999999999999999543 3454 3 67899999999999999998
Q ss_pred eCC
Q 031156 93 DLD 95 (165)
Q Consensus 93 D~~ 95 (165)
...
T Consensus 80 l~~ 82 (100)
T 2dzm_A 80 TPD 82 (100)
T ss_dssp CSS
T ss_pred ecC
Confidence 753
No 70
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=1.3e-12 Score=94.01 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=63.9
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCC---------------CceEEEEEcCCCCeeeccCCCCCc
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSV---------------NSMSLELYDDTNTKVAALTDNSRP 77 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~---------------~~q~L~l~~~~g~~i~~l~dD~~~ 77 (165)
.++|+|.. +++...++.++++.||.+||++|+..+|+|| .+|+|+ | .|+. |.+|.++
T Consensus 7 ~M~I~Vk~--l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li-~--~Gk~---L~dD~~t 78 (105)
T 1v2y_A 7 GMTVRVCK--MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT-S--AGEK---LTEDRKK 78 (105)
T ss_dssp SEEEEEEC--SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE-S--SSCE---ECCSSSB
T ss_pred cEEEEEEe--cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE-e--CCcC---ccCCcCC
Confidence 47788874 6777899999999999999999999999998 357997 4 5774 5678899
Q ss_pred cCCCCCCCCcEEEEEeC
Q 031156 78 LGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 78 L~~ygv~dg~~IhV~D~ 94 (165)
|.+|||++|++||++-.
T Consensus 79 L~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 79 LRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp HHHHTCCSSEEEEEEEC
T ss_pred HHHcCCCCCCEEEEEeh
Confidence 99999999999999985
No 71
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.33 E-value=5.8e-12 Score=97.29 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=62.4
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|+|++ ++++...+++++++||.+||++|+..+|+||++|+|++ .|+. ++|+.+|++|||++|++||++-.
T Consensus 2 qI~Vk~--~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 2 QIFVKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp EEEEEE--TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEE----CCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEe--CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCcc----ccCcCcHHHcCCCCCCEEEEEEE
Confidence 577775 55678889999999999999999999999999999975 4764 46889999999999999999975
No 72
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=5e-12 Score=87.90 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=60.7
Q ss_pred cEEEEEEecCCCCce--EEE-EecCCCCHHHHHHHHHHH-HCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 13 SVLLRVTHSNLKSFS--ADV-RFPLQMSVESVKDKLWRK-CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 13 ~V~v~It~s~l~~~~--~e~-r~~~~~TV~~LK~KLe~~-tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
.++|+|.+ +++.. .++ +++++.||.+||++|+.. .|+||++|+|++ ...|+. ++|+.+|.+|||++|++
T Consensus 10 ~M~I~Vk~--~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~-~~~Gk~----L~D~~tL~~y~i~~~st 82 (88)
T 2dzj_A 10 HYEVEILD--AKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRL-DPKGKS----LKDEDVLQKLPVGTTAT 82 (88)
T ss_dssp CEEEEEEE--SSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEES-STTSCC----CCTTCBTTTSSCCSEEE
T ss_pred EEEEEEEC--CCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEe-cCCCcC----cCCCCCHHHcCCCCCCE
Confidence 36777775 44333 367 899999999999999994 899999999964 345663 47889999999999999
Q ss_pred EEEEeC
Q 031156 89 LHVIDL 94 (165)
Q Consensus 89 IhV~D~ 94 (165)
|||-|.
T Consensus 83 l~~KDL 88 (88)
T 2dzj_A 83 LYFRDL 88 (88)
T ss_dssp EEECCC
T ss_pred EEEEeC
Confidence 999873
No 73
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.00 E-value=1.3e-13 Score=91.98 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=58.7
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+|+|+. +.+....+++++++||++||++|+..+|+||+.|+|.+ .|+. .+|+.+|++||+++|++||++-
T Consensus 2 ~i~Vk~--~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~gk~----L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 2 IVFVRF--NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF---AGKE----LPNHLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 455654 34556778999999999999999999999999999975 3663 3678999999999999999975
No 74
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.1e-12 Score=92.92 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=69.7
Q ss_pred ccccccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCC
Q 031156 4 RLQQIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSP 83 (165)
Q Consensus 4 ~~~~~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv 83 (165)
+...+..++.++|.|..... +...++.|+++.||++||++|+..+|+|++.|+|+| +|+. +.|+.+|.+|||
T Consensus 6 ~~~~~~~~~~itvkv~l~~~-~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy---~GKi----LKD~eTL~~~gI 77 (118)
T 2daf_A 6 SGQESVEDSLATVKVVLIPV-GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY---SGKI----LKNNETLVQHGV 77 (118)
T ss_dssp CCCCCCCSSCEEEEEEETTT-CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE---TTEE----ECSSCCHHHHSC
T ss_pred hhhhcccCccEEEEEEEcCC-CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE---CCeE----cCCcchHHHcCC
Confidence 44556777788888763322 235788999999999999999999999999999975 5874 367889999999
Q ss_pred CCCcEEEEEeCCC
Q 031156 84 LQGYRLHVIDLDP 96 (165)
Q Consensus 84 ~dg~~IhV~D~~p 96 (165)
++|.+||++-...
T Consensus 78 k~g~TIhLvi~s~ 90 (118)
T 2daf_A 78 KPQEIVQVEIFST 90 (118)
T ss_dssp CSSCEEEEEEEES
T ss_pred CCCCEEEEEEecC
Confidence 9999999998643
No 75
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.31 E-value=7.1e-12 Score=91.90 Aligned_cols=71 Identities=11% Similarity=-0.032 Sum_probs=59.9
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCC-------CC
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL-------QG 86 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~-------dg 86 (165)
+.|.|.... ..+.+.+.++.||.+||++|+.++||||.+|||+ | +|+. ++|+++|++|||+ .+
T Consensus 3 mfl~ir~~k---tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi-~--~Gk~----LeD~~TLsdy~I~~~~a~~q~~ 72 (118)
T 2fnj_B 3 VFLMIRRHK---TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY-K--DDQL----LDDGKTLGECGFTSQTARPQAP 72 (118)
T ss_dssp EEEEEEEBT---EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-E--TTEE----CCTTSBHHHHTCCTTTSBTTBC
T ss_pred EEEEEecCC---EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE-E--CCeE----CCCCCCHHHcCcccccccCCCC
Confidence 455565432 2578899999999999999999999999999997 4 5763 5899999999999 79
Q ss_pred cEEEEEeC
Q 031156 87 YRLHVIDL 94 (165)
Q Consensus 87 ~~IhV~D~ 94 (165)
++||++..
T Consensus 73 stL~L~lr 80 (118)
T 2fnj_B 73 ATVGLAFR 80 (118)
T ss_dssp EEEEEEEB
T ss_pred CEEEEEec
Confidence 99999985
No 76
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.29 E-value=9.7e-12 Score=95.35 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=60.9
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+.|+|+. +++....+++++++||.+||++|+..+|+||+.|+|++ .|+. ++|+.+|++|+|++|++||++-
T Consensus 97 ~~i~Vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~----L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 97 MQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp EEEEEEE--SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEE----CCTTSBSGGGTCCTTCEEEECC
T ss_pred ccceeec--ccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE---CCcc----CCCCCcHHHhCCCCCCEEEEEE
Confidence 4555654 55678889999999999999999999999999999975 4663 4688999999999999999975
No 77
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.29 E-value=1e-11 Score=97.74 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=62.9
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++|+|++ +++....++++++.||.+||++|+..+||||+.|+|++ .|+. ++|+.+|++|+|++|++|||+.
T Consensus 106 MqI~VKt--l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~---~Gk~----L~D~~tL~dygI~~gstI~Lvl 176 (189)
T 3q3f_A 106 GQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL 176 (189)
T ss_dssp EEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEE----CCTTCBGGGGTCCTTCEEEECC
T ss_pred eeeeeec--CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE---CCEE----CCCCCCHHHCCCCCCCEEEEEE
Confidence 6777775 56678889999999999999999999999999999975 4764 4678999999999999999987
Q ss_pred C
Q 031156 94 L 94 (165)
Q Consensus 94 ~ 94 (165)
.
T Consensus 177 r 177 (189)
T 3q3f_A 177 R 177 (189)
T ss_dssp C
T ss_pred E
Confidence 4
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.25 E-value=3.6e-11 Score=89.27 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=61.5
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+.|.|.. +.+...+++++++.||.+||++|+..+|+||+.|+|.+ .|+. .+|+.+|++||+++|++||++-
T Consensus 77 ~~i~Vk~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~---~g~~----L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 77 MQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp EEEEEEE--SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEE----CCTTSBTGGGTCCTTCEEEEEE
T ss_pred cceeeee--cCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE---CCEE----CCCCCCHHHcCCCCCCEEEEEE
Confidence 4566664 45567889999999999999999999999999999975 4764 3688999999999999999987
Q ss_pred C
Q 031156 94 L 94 (165)
Q Consensus 94 ~ 94 (165)
.
T Consensus 148 r 148 (152)
T 3b08_A 148 R 148 (152)
T ss_dssp C
T ss_pred e
Confidence 4
No 79
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=5.7e-11 Score=86.79 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=64.9
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHH------HHCC--CCCceEEEEEcCCCCeeeccCCCCCccCC
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWR------KCGT--SVNSMSLELYDDTNTKVAALTDNSRPLGF 80 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~------~tGi--p~~~q~L~l~~~~g~~i~~l~dD~~~L~~ 80 (165)
.+...+.|+|++ +++...+++++++.||.+||++|+. ..|+ |+++|||+| .|+. ++|+.+|++
T Consensus 12 ~~~~~m~I~vKt--l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy---~GK~----LeD~~TL~~ 82 (116)
T 1wgh_A 12 VPADMINLRLIL--VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRF----LHGNVTLGA 82 (116)
T ss_dssp CCSSSEEEEEEC--SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE---TTEE----ECSSCBTTT
T ss_pred CCCCeEEEEEEe--CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEE---CCcC----CCCCCcHHH
Confidence 455678888885 5677899999999999999999999 6786 699999976 5874 478899999
Q ss_pred CCCCCC--cEEEEEeCC
Q 031156 81 YSPLQG--YRLHVIDLD 95 (165)
Q Consensus 81 ygv~dg--~~IhV~D~~ 95 (165)
|+|+.| .+|||+-.-
T Consensus 83 y~I~~~~~~tlhLvlr~ 99 (116)
T 1wgh_A 83 LKLPFGKTTVMHLVARE 99 (116)
T ss_dssp TTCCSSCEEEEEEEECS
T ss_pred cCCCCCCceEEEEEccC
Confidence 999866 689988753
No 80
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.24 E-value=7.1e-13 Score=97.81 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=0.0
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|+|.+ +.+...++++++++||++||++|+..+|+||+.|+|++ .|+. ++|+.+|++|||++|++|||+-.
T Consensus 2 ~I~Vk~--~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 2 QIFVKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEe--CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE---CCEE----CCCCCchhhhccCCCCEEEEEEE
Confidence 456664 44557788999999999999999999999999999975 4663 47889999999999999999975
Q ss_pred C
Q 031156 95 D 95 (165)
Q Consensus 95 ~ 95 (165)
-
T Consensus 73 l 73 (128)
T 3u5e_m 73 L 73 (128)
T ss_dssp -
T ss_pred c
Confidence 3
No 81
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.22 E-value=2.9e-11 Score=83.17 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=60.0
Q ss_pred EEEEEecCCCCceEEEE-ecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 15 LLRVTHSNLKSFSADVR-FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r-~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+|.|++.+ |.. .+. |+++.||.+||++|+..+|||+..|+|.+ ...++.+. +.+|+.+|.+|||.+|++|||.+
T Consensus 2 ~i~vr~~~--G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~-~~p~k~l~-l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 2 RVRCKAKG--GTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILV-GYPPECLD-LSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CEEEEETT--EEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE-SSCCCCCC-CCCSSCBTTTSSCCTTCEEECCC
T ss_pred EEEEEcCC--CCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEe-CCCCcccc-cCCCCCCHHHcCCCCCCEEEEEe
Confidence 46777543 333 366 99999999999999999999999999964 22244321 23478999999999999999999
Q ss_pred CCC
Q 031156 94 LDP 96 (165)
Q Consensus 94 ~~p 96 (165)
..+
T Consensus 77 ~~~ 79 (86)
T 2kzr_A 77 DQT 79 (86)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 82
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.22 E-value=3.8e-11 Score=100.83 Aligned_cols=78 Identities=19% Similarity=0.213 Sum_probs=66.5
Q ss_pred cccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCC
Q 031156 7 QIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (165)
Q Consensus 7 ~~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg 86 (165)
.....+.++|.|++ +.++..++++++++||++||++|+..+|||+++|+|++ .|+. ++|+.+|++|||++|
T Consensus 227 A~~~~~~MqI~VKt--l~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~---~Gk~----L~D~~TLsdygI~~g 297 (307)
T 3ai5_A 227 AAGITGSMQIFVKT--LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKE 297 (307)
T ss_dssp EESSCCCEEEEEEC--TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEE----CCTTSBTGGGTCCTT
T ss_pred ccCCCCeEEEEEEe--CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe---CCee----cCCCCCHHHcCCCCC
Confidence 34456678888885 44567889999999999999999999999999999975 4764 368899999999999
Q ss_pred cEEEEEe
Q 031156 87 YRLHVID 93 (165)
Q Consensus 87 ~~IhV~D 93 (165)
++|||+.
T Consensus 298 stL~Lvl 304 (307)
T 3ai5_A 298 STLHLVL 304 (307)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9999975
No 83
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.21 E-value=4.6e-11 Score=100.78 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=78.9
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEE--EcCCCCeeeccCCCCCccCCCCCCCCc
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL--YDDTNTKVAALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l--~~~~g~~i~~l~dD~~~L~~ygv~dg~ 87 (165)
....|+|.|++ .+...++.++++.||++||++|+..|||||.+|+|++ + .|+ +..|+.+|++|||++|+
T Consensus 2 ~~~~i~i~Vk~---~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~--~Gk----~l~D~~~L~~~~ik~g~ 72 (320)
T 3shq_A 2 EVKEVVVIVKW---SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKY--KGK----TAADNVKISALELKPNF 72 (320)
T ss_dssp --CEEEEEEEE---TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBS--SSS----BCCTTSBTTSSCCC--C
T ss_pred CCceEEEEEEE---CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeeccc--CCc----ccCccccHHHcCCCCCC
Confidence 34578999997 3557889999999999999999999999999999962 2 355 35788999999999999
Q ss_pred EEEEEeCCCCccc----C---CCc-cccCCcceeeecCHHHhhcccchHHHHHHHHhccCch
Q 031156 88 RLHVIDLDPSSVT----S---GGW-LEDTSLVEKYTISEEEYSKRDGTFRKFKEKVLSQNPS 141 (165)
Q Consensus 88 ~IhV~D~~p~s~~----~---~~~-l~d~s~veky~lsee~Y~kr~dtv~~~kk~~k~f~p~ 141 (165)
+||++-+....+. . ... ++|...- .- -+.++..+.-..+.-.++..+|.+.
T Consensus 73 ~l~L~gs~~~~i~~~~~~p~~~~~~~eD~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (320)
T 3shq_A 73 KLMMVGSTEADIEDACSLPDNIGEVVDDFDDA-DE--REESVAHSAVYLAKVQRRVRDYKIK 131 (320)
T ss_dssp EEEEECCCC----------CCCSCCCCTTCCC-CC----CCSTTSHHHHHHHHHHHHHCCCC
T ss_pred EEEEEccchhhhcccccCCCcCCcccccCCCc-cc--chhhhhhhhhhHHHHHHHHHhcCCC
Confidence 9999976433222 0 001 2333210 00 0123555666666666666666654
No 84
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.21 E-value=2.7e-11 Score=89.62 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=65.5
Q ss_pred cccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHH------HHCCC--CCceEEEEEcCCCCeeeccCCCCCcc
Q 031156 7 QIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWR------KCGTS--VNSMSLELYDDTNTKVAALTDNSRPL 78 (165)
Q Consensus 7 ~~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~------~tGip--~~~q~L~l~~~~g~~i~~l~dD~~~L 78 (165)
...+...+.|.|+. +++...+++|+++.||++||++|+. ..|+| +++|+|+| .|+. ++|+.+|
T Consensus 11 ~~~~~~~m~I~vkt--l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy---~GK~----LeD~~TL 81 (125)
T 2gow_A 11 SNVPADMINLRLIL--VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRF----LHGNVTL 81 (125)
T ss_dssp CSCCTTCEEEEEEC--TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES---SSSE----EESSCBT
T ss_pred cCCCCCeEEEEEEe--CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE---CCcC----CCCCCcH
Confidence 34455568888875 5667899999999999999999998 78985 89999975 5885 3688999
Q ss_pred CCCCCCCCc--EEEEEeCC
Q 031156 79 GFYSPLQGY--RLHVIDLD 95 (165)
Q Consensus 79 ~~ygv~dg~--~IhV~D~~ 95 (165)
++|+|+.|. +|||+-.-
T Consensus 82 ~~y~I~~~~~~tlhlv~r~ 100 (125)
T 2gow_A 82 GALKLPFGKTTVMHLVARE 100 (125)
T ss_dssp GGGCCCTTSEEEEEEEECS
T ss_pred HHcCCCCCCceEEEEEecC
Confidence 999999776 78888753
No 85
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.18 E-value=8.3e-11 Score=87.09 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=62.3
Q ss_pred ccEEEEEEecCCCCceE-EEEecCCCCHHHHHHHH-----HHHHCCCC--CceEEEEEcCCCCeeeccCCCCCccCCCCC
Q 031156 12 ESVLLRVTHSNLKSFSA-DVRFPLQMSVESVKDKL-----WRKCGTSV--NSMSLELYDDTNTKVAALTDNSRPLGFYSP 83 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~-e~r~~~~~TV~~LK~KL-----e~~tGip~--~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv 83 (165)
..+.|.|+. +++... .++|+++.||.+||++| +...|+|+ ++|||+| .|+. ++|+.+|++|+|
T Consensus 15 ~~~~i~~kt--~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy---~GK~----LeD~~TLsdy~I 85 (126)
T 1se9_A 15 NQLEIKFRL--TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS---AGKV----LENSKTVKDYRS 85 (126)
T ss_dssp CCEEEEEEE--TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE---TTEE----CCTTSBGGGGSC
T ss_pred ccEEEEEEE--CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEE---CCeE----CcCCCcHHHcCC
Confidence 578888886 555555 69999999999999999 56789997 7999975 5874 589999999999
Q ss_pred CCC------cEEEEEeC
Q 031156 84 LQG------YRLHVIDL 94 (165)
Q Consensus 84 ~dg------~~IhV~D~ 94 (165)
+.| .+|||+..
T Consensus 86 ~~~~~~~~v~tmhlVlr 102 (126)
T 1se9_A 86 PVSNLAGAVTTMHVIIQ 102 (126)
T ss_dssp CTTSCTTCCEEEEEEEC
T ss_pred CcCCccCCcEEEEEEec
Confidence 999 78999884
No 86
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.17 E-value=2.6e-12 Score=97.91 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+|+|.+ +.+....+++++++||.+||++|+..+||||+.|+|++ .|+. ++|+.+|++|||++|++|||+-.
T Consensus 2 qI~VK~--l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~----L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 2 QIFVKT--LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQ----LEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEe--CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEE----ccccCcHHHcCCCCCCEEEEEee
Confidence 456664 34556788999999999999999999999999999975 4663 46889999999999999999874
No 87
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.01 E-value=3.9e-10 Score=96.77 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=62.1
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHH---HHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCC
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWR---KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQ 85 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~---~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~d 85 (165)
..+..++|+|++ ++++.+.++++++.||.+||.+|+. .+|||+..|+|+| .|+. +.|+++|.+|||++
T Consensus 3 ~~~~~M~I~VKt--l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy---~GK~----L~D~~tL~dygI~~ 73 (368)
T 1oqy_A 3 LGSSAVTITLKT--LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKI----LSDDVPIRDYRIDE 73 (368)
T ss_dssp ---CCCCEEEEE--TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES---SSSE----ECSSSBTTTTCCCT
T ss_pred CCCceEEEEEEe--CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE---CCee----cCCcCCHHHcCCCC
Confidence 345678899986 4567888999999999999999999 6889999999965 4774 36789999999999
Q ss_pred CcEE-EEEe
Q 031156 86 GYRL-HVID 93 (165)
Q Consensus 86 g~~I-hV~D 93 (165)
|++| |++-
T Consensus 74 gstIv~lv~ 82 (368)
T 1oqy_A 74 KNFVVVMVT 82 (368)
T ss_dssp TSCEEEEEE
T ss_pred CCEEEEEEe
Confidence 9999 5544
No 88
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=1.7e-08 Score=70.82 Aligned_cols=76 Identities=7% Similarity=0.116 Sum_probs=64.0
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
....|+|.|.. ..+....+++.++.++..|++++....|+|+.+|+|.| +|+. .+++.|+.+|++++|++|
T Consensus 4 ~~~~i~ikVk~--~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~----l~~~~Tp~dl~medgD~I 74 (94)
T 2io1_B 4 MNDHINLKVAG--QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQP----INETDTPAQLEMEDEDTI 74 (94)
T ss_dssp --CEEEEEEEC--TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTCCTTTTTCCTTCEE
T ss_pred CCCeEEEEEEC--CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE---CCEE----cCCCCCHHHcCCCCCCEE
Confidence 34578888885 34557889999999999999999999999999999964 5764 367789999999999999
Q ss_pred EEEeC
Q 031156 90 HVIDL 94 (165)
Q Consensus 90 hV~D~ 94 (165)
||+..
T Consensus 75 dv~~~ 79 (94)
T 2io1_B 75 DVFQQ 79 (94)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99985
No 89
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.76 E-value=9.2e-08 Score=63.54 Aligned_cols=70 Identities=7% Similarity=0.123 Sum_probs=60.1
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
|+|.|.. ..+....+++.++.++..|+++.....|+|+++++|.| +|+. ..++.|..+|++++|++|||.
T Consensus 2 i~lkV~~--~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~----l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAG--QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQP----INETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEEC--TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE---TTEE----CCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEE----cCCCCCHHHcCCCCCCEEEEE
Confidence 6777774 34557889999999999999999999999999999965 5764 357789999999999999985
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.75 E-value=8.1e-08 Score=67.00 Aligned_cols=77 Identities=6% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
+...|+|.|.. ..+....+++.++.++..|+++.....|+|+++++|.| +|+. ..++.|..+|++++|++|
T Consensus 2 ~~~~i~ikVk~--~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~----l~~~~Tp~dl~medgD~I 72 (91)
T 2io0_B 2 ANDHINLKVAG--QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQP----INETDTPAQLEMEDEDTI 72 (91)
T ss_dssp --CEEEEEEEC--TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE---TTEE----CCTTCCTTTTTCCTTEEE
T ss_pred CCCeEEEEEEC--CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEE----cCCCCCHHHcCCCCCCEE
Confidence 45578888885 34557889999999999999999999999999999964 5764 357789999999999999
Q ss_pred EEEeCC
Q 031156 90 HVIDLD 95 (165)
Q Consensus 90 hV~D~~ 95 (165)
+|....
T Consensus 73 dv~~~q 78 (91)
T 2io0_B 73 DVFQQQ 78 (91)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999753
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.74 E-value=6.1e-08 Score=65.69 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=63.9
Q ss_pred ccCCccEEEEEEecCCCCc-eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCC
Q 031156 8 IEGDESVLLRVTHSNLKSF-SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (165)
Q Consensus 8 ~~~~~~V~v~It~s~l~~~-~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg 86 (165)
..++..|+|.|.. ..+. ...+++.++.++..|+.+.....|+++.+++|.| +|.. ..++.|..+|++++|
T Consensus 2 p~~~~~i~ikV~~--~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~----l~~~~Tp~~l~medg 72 (79)
T 3a4r_A 2 PLGSQELRLRVQG--KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF---DGTK----LSGKELPADLGLESG 72 (79)
T ss_dssp TTCCCCEEEEEEC--SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE---TTEE----CCSCCCHHHHTCCTT
T ss_pred CCCCCEEEEEEEe--CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEE----cCCCCCHHHcCCCCC
Confidence 3456788888885 3443 6789999999999999999999999999999965 5764 367789999999999
Q ss_pred cEEEEE
Q 031156 87 YRLHVI 92 (165)
Q Consensus 87 ~~IhV~ 92 (165)
++|||.
T Consensus 73 D~Idv~ 78 (79)
T 3a4r_A 73 DLIEVW 78 (79)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999985
No 92
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.70 E-value=1.8e-09 Score=84.96 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.|+|.+ +++..+.+++++++||.+||.+|+..+||||++|+|+| .|+. ++|+.+|. +|++||++.
T Consensus 2 qI~VKt--L~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf---~GK~----LeD~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 2 QVQVKT--LEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN---NGFI----APNTELVT-----DDVTYYLSL 66 (189)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred EEEEEc--CCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEe---cCeE----CCCCCccc-----CCCEEEEEE
Confidence 456664 45567788999999999999999999999999999975 4764 36778888 999999986
No 93
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.67 E-value=2.3e-07 Score=64.73 Aligned_cols=75 Identities=7% Similarity=0.141 Sum_probs=63.5
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
+..|+|.|... .+....+++.++.++..|+.+.....|+++.+++|.| +|+. ..++.|+.+|++++|++||
T Consensus 15 ~~~i~ikV~~~--~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~----l~~~~Tp~dl~medgD~Id 85 (93)
T 2d07_B 15 NDHINLKVAGQ--DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQP----INETDTPAQLEMEDEDTID 85 (93)
T ss_dssp CCEEEEEEECT--TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTCCTTTTTCCTTEEEE
T ss_pred CCeEEEEEECC--CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE---CCEE----cCCCCCHHHcCCCCCCEEE
Confidence 45778888753 4457889999999999999999999999999999964 5764 3577899999999999999
Q ss_pred EEeC
Q 031156 91 VIDL 94 (165)
Q Consensus 91 V~D~ 94 (165)
|...
T Consensus 86 v~~~ 89 (93)
T 2d07_B 86 VFQQ 89 (93)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9864
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.58 E-value=3.5e-07 Score=65.26 Aligned_cols=75 Identities=7% Similarity=0.154 Sum_probs=63.8
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
...|+|.|... .+....+++.++.++..|+.++....|+++.+++|. | +|+. ..++.|+.+|++++|++||
T Consensus 22 ~~~I~IkVk~~--~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~-F--dG~~----l~~~~Tp~dl~medgD~Id 92 (104)
T 1wz0_A 22 NDHINLKVAGQ--DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-F--DGQP----INETDTPAQLEMEDEDTID 92 (104)
T ss_dssp SCCEEEEEECS--SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE-S--SSSB----CCTTSCTTTTTCCTTEEEE
T ss_pred CCeEEEEEECC--CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-E--CCEE----cCCCCCHHHcCCCCCCEEE
Confidence 35788888853 445788999999999999999999999999999996 4 5764 3577899999999999999
Q ss_pred EEeC
Q 031156 91 VIDL 94 (165)
Q Consensus 91 V~D~ 94 (165)
|...
T Consensus 93 v~~~ 96 (104)
T 1wz0_A 93 VFQQ 96 (104)
T ss_dssp ECCC
T ss_pred EEEe
Confidence 9864
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.48 E-value=1.2e-06 Score=62.82 Aligned_cols=74 Identities=7% Similarity=0.073 Sum_probs=63.0
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
...|+|.|.. .+....+++.++.++..|+.+.....|+++.+++|.| +|+. ..++.|..+|++++|++|+
T Consensus 29 ~~~I~IkV~~---~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F---dG~r----l~~~~Tp~dl~medgD~Id 98 (106)
T 2eke_C 29 ETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIR----IQADQTPEDLDMEDNDIIE 98 (106)
T ss_dssp CSEEEEEEEC---SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEE----CCTTCCTTTTTCCTTEEEE
T ss_pred CCeEEEEEec---CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE---CCeE----cCCCCCHHHcCCCCCCEEE
Confidence 3467787774 4567889999999999999999999999999999965 5764 3577899999999999999
Q ss_pred EEeC
Q 031156 91 VIDL 94 (165)
Q Consensus 91 V~D~ 94 (165)
|...
T Consensus 99 v~~~ 102 (106)
T 2eke_C 99 AHRE 102 (106)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9864
No 96
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.44 E-value=4.7e-07 Score=65.30 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=63.9
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
..|+|.|... .+....+++.++.++..|+.+.....|+|+.+++|. | +|+. ..++.|+.+|++++|++|+|
T Consensus 25 ~~I~IkVk~~--~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi-F--dG~~----L~~~~Tp~dl~mEDgD~Idv 95 (110)
T 2k8h_A 25 ALVAVKVVNA--DGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL-F--DGTP----IDETKTPEELGMEDDDVIDA 95 (110)
T ss_dssp CCEEEEEEET--TSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE-S--SSCB----CCSSSHHHHHHCSSEEEEEE
T ss_pred CeEEEEEECC--CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-E--CCEE----cCCCCCHHHcCCCCCCEEEE
Confidence 4788888864 444778999999999999999999999999999996 4 5764 35778999999999999999
Q ss_pred EeCC
Q 031156 92 IDLD 95 (165)
Q Consensus 92 ~D~~ 95 (165)
....
T Consensus 96 ~~~q 99 (110)
T 2k8h_A 96 MVEQ 99 (110)
T ss_dssp ECCC
T ss_pred EEcc
Confidence 8853
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.00 E-value=6.7e-05 Score=54.40 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=62.1
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHV 91 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV 91 (165)
..|+|.|... .+....+++.++.++..|+.......|+++.+++|.| +|.. .+++.|..++++++|++|+|
T Consensus 39 ~~I~LKV~~q--dg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF---DG~r----I~~~~TP~dL~MEDgD~IdV 109 (115)
T 3kyd_D 39 EYIKLKVIGQ--DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQR----IADNHTPKELGMEEEDVIEV 109 (115)
T ss_dssp CEEEEEEECT--TSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE---TTEE----CCTTCCTTTTTCCTTCEEEE
T ss_pred CeEEEEEEcC--CCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE---CCeE----CCCCCCHHHcCCCCCCEEEE
Confidence 5778888753 3446788999999999999999999999999999964 5764 35678999999999999999
Q ss_pred EeC
Q 031156 92 IDL 94 (165)
Q Consensus 92 ~D~ 94 (165)
.-.
T Consensus 110 ~~~ 112 (115)
T 3kyd_D 110 YQE 112 (115)
T ss_dssp EEC
T ss_pred Eee
Confidence 763
No 98
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.96 E-value=3.5e-06 Score=57.16 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=54.5
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+.|.|.+.+. ...+.++++.|+.+|+++|...+|+++..|.|.+-.+....+. ..++.+|.++|++.|+.|+|..
T Consensus 5 m~lRvrs~~G---~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~--~~~~~~l~~lgl~hGd~l~l~~ 79 (80)
T 2pjh_A 5 IIIRVQSPDG---VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEIT--ASSSKSLHLLKIKHGDLLFLFP 79 (80)
T ss_dssp CCCEEECSSE---EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSS--SCCCCTTTTTCCCTTCCEEC--
T ss_pred EEEEEECCCC---CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCccc--CCCCCCHHHcCCCCCCEEEEec
Confidence 4567775543 3556688999999999999999999999998855222101111 2378899999999999998753
No 99
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.93 E-value=4.1e-05 Score=53.70 Aligned_cols=73 Identities=7% Similarity=0.111 Sum_probs=51.1
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCC-CCcEEEEEe
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPL-QGYRLHVID 93 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~-dg~~IhV~D 93 (165)
-|+|- +-.++....+.+.+..||..||++|+..|||||++|+|.+ .|+.+. .+.......|+-. ...-|.+..
T Consensus 14 vvHVf-~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~---eg~~l~--l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 14 VIHVF-SLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIY---EGRRLV--LEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEE-ETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEEEC--CCTTCBGGGSCCCBTTBCEEEEE
T ss_pred eEEEE-EcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHh---CCCccc--cCCCCccccCCCCCCCCCEEEEe
Confidence 35555 3334457889999999999999999999999999999965 575443 3556665566543 333444444
No 100
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.90 E-value=9.3e-05 Score=58.44 Aligned_cols=75 Identities=7% Similarity=0.066 Sum_probs=64.6
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
+...|+|.|. . .+....+++.++.++..|+.......|+|+.++||.| +|+. ..++.|..++++++|++|
T Consensus 26 ~~~~I~LkV~-~--~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F---dG~r----I~~~~TP~dL~MEdgD~I 95 (200)
T 3pge_A 26 PETHINLKVS-D--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIR----IQADQTPEDLDMEDNDII 95 (200)
T ss_dssp CCCCEEEEEE-C--SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE---TTEE----CCTTCCTTTTTCCTTEEE
T ss_pred CCCeEEEEEe-c--CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE---CCEE----cCCCCCHHHcCCCCCCEE
Confidence 4557888885 3 5567899999999999999999999999999999964 5775 357889999999999999
Q ss_pred EEEeC
Q 031156 90 HVIDL 94 (165)
Q Consensus 90 hV~D~ 94 (165)
+|.-.
T Consensus 96 dv~~~ 100 (200)
T 3pge_A 96 EAHRE 100 (200)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99985
No 101
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.0002 Score=56.42 Aligned_cols=74 Identities=7% Similarity=0.075 Sum_probs=63.4
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
...|+|.|. . .+....+++.++.++..|+.......|+++.+++|.| +|.. .+++.|..+++++||++|+
T Consensus 55 ~e~InLKVk-~--dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF---DGqR----I~~ddTPeDLdMEDGDtID 124 (207)
T 3tix_A 55 ETHINLKVS-D--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY---DGIE----IQADQTPEDLDMEDNDIIE 124 (207)
T ss_dssp CCEEEEEEE-C--SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE---TTEE----CCSSCCTTTTTCCTTEEEE
T ss_pred CCcEEEEEe-c--CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE---CCee----cCCCCCHHHcCCCCCCEEE
Confidence 457888885 2 5567889999999999999999999999999999964 5765 3568899999999999999
Q ss_pred EEeC
Q 031156 91 VIDL 94 (165)
Q Consensus 91 V~D~ 94 (165)
|.-.
T Consensus 125 V~le 128 (207)
T 3tix_A 125 AHRE 128 (207)
T ss_dssp ECCC
T ss_pred EEEe
Confidence 9985
No 102
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.60 E-value=0.00015 Score=49.51 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=57.8
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCc---eEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNS---MSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~---q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
.+|+|.|.-+...+.....|+|..+|+..|+.-|-...|++... =.|.+. .+. .+..+...|.+|||.+|+.
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~---NK~--~~L~~~~~L~d~~ItnGD~ 77 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVV---NKD--KVFSGECKLSDCGITNGDR 77 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEG---GGT--EEEETTSBTGGGTCCTTCE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEe---cCC--EEEcCCCEEeeCCcCCCCE
Confidence 46788887666778899999999999999999999999998631 122222 111 1346788999999999999
Q ss_pred EEE
Q 031156 89 LHV 91 (165)
Q Consensus 89 IhV 91 (165)
|.|
T Consensus 78 Lei 80 (81)
T 2bps_A 78 LEI 80 (81)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 103
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=97.39 E-value=0.0017 Score=51.93 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=57.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCC-ceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeCCC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLDP 96 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~-~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~p 96 (165)
...+.|+...||.+|+.++-.+++|++. ..||..+...+. ...|.+.+.+|.++++.+|..|.|.-.+.
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~-~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNT-YEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSS-CEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCC-HhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 4568899999999999999999999997 699987754333 34466678999999999999998887653
No 104
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.28 E-value=0.0042 Score=42.09 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=60.1
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCC-ceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~-~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
..|++.+.+|-.. -..++++++.||.+|=..-...-|||++ .-+|. | +|.. .+++.++.+|.+.||..|-
T Consensus 8 ~~~~~~~~~~~~~--dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~Irll-F--DGdR----Ldp~~tp~DlemeD~D~ID 78 (82)
T 3goe_A 8 KLITLLLRSSKSE--DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLE-F--EGEW----LDPNDQVQSTELEDEDQVS 78 (82)
T ss_dssp CEEEEEEEESSSC--CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEE-E--TTEE----CCTTSBGGGSSCCTTCEEE
T ss_pred HHHHHhhhccCCC--CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEE-E--cCcc----cCccCChhhhCCcCCceee
Confidence 3578888865433 4678899999999999999999999999 88985 5 5753 4788999999999999998
Q ss_pred EEe
Q 031156 91 VID 93 (165)
Q Consensus 91 V~D 93 (165)
|+.
T Consensus 79 vmL 81 (82)
T 3goe_A 79 VVL 81 (82)
T ss_dssp EEC
T ss_pred eee
Confidence 863
No 105
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=97.20 E-value=0.0015 Score=51.71 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=57.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCC-ceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeCC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDLD 95 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~-~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~~ 95 (165)
...+.|+...||.+|+.++-..+|||+. ..||..+...+ ....|.+++.+|.++++.+|..|.|.-.+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~-~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSN-TFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETT-EEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCC-CeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 4668899999999999999999999997 79998764333 34446677899999999999999888765
No 106
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.17 E-value=0.0077 Score=40.46 Aligned_cols=81 Identities=15% Similarity=0.025 Sum_probs=60.6
Q ss_pred ccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCc
Q 031156 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 8 ~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~ 87 (165)
+.+.+.++|.|...+ |....++|+.+.||.+|..-|.. .|.++....|. ..-..+.+. ..+.+++|.+.|+.+..
T Consensus 2 ~~~~~~~~i~iRlpd--G~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~-t~fPrk~l~-~~d~~~TL~e~gL~p~a 76 (84)
T 3qx1_A 2 SHMEPVSKLRIRTPS--GEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLL-STFPRRDVT-QLDPNKSLLEVKLFPQE 76 (84)
T ss_dssp --CCCEEEEEEECTT--SCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEE-CSSSCCBGG-GSCTTSBTTTTTCCSEE
T ss_pred CCCCCeEEEEEECCC--CCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEE-eCCCCCCCc-CCCCCCCHHHCCCCCCC
Confidence 346678899999755 44789999999999999999998 78777777764 211123322 23568899999999999
Q ss_pred EEEEEe
Q 031156 88 RLHVID 93 (165)
Q Consensus 88 ~IhV~D 93 (165)
.|+|..
T Consensus 77 ~L~ve~ 82 (84)
T 3qx1_A 77 TLFLEA 82 (84)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999875
No 107
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.64 E-value=0.014 Score=45.72 Aligned_cols=77 Identities=6% Similarity=0.082 Sum_probs=62.3
Q ss_pred ccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCc
Q 031156 8 IEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 8 ~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~ 87 (165)
..++..|+|.|.. .+....+++.++.++.-|+.......|+|+.+++|.| +|.. ..++.+-....+++++
T Consensus 16 ~~~~~~i~ikv~~---~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~f---dG~~----i~~~~Tpk~L~~ed~d 85 (209)
T 3uf8_A 16 VKPETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIR----IQADQTPEDLDMEDND 85 (209)
T ss_dssp --CCSEEEEEEEC---SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEE---TTEE----CCTTCCTTTTTCCTTE
T ss_pred eCCCCcEEEEEEc---CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEE---CCEe----ccCCCChHHhhhcccc
Confidence 4566788898883 3446789999999999999999999999999999965 5765 2567788888999999
Q ss_pred EEEEEeC
Q 031156 88 RLHVIDL 94 (165)
Q Consensus 88 ~IhV~D~ 94 (165)
.|+|.-.
T Consensus 86 ~I~~~~e 92 (209)
T 3uf8_A 86 IIEAHRE 92 (209)
T ss_dssp EEEEECS
T ss_pred cchhhcc
Confidence 9988764
No 108
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=96.61 E-value=0.00032 Score=55.94 Aligned_cols=75 Identities=7% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
+...|+|.|+ ..+....+++.++.++..|+.......|+++.++||.| +|+. .+++.|..+++++||++|
T Consensus 18 p~e~InLKV~---qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLF---DGqR----I~dddTPadL~MEDGDtI 87 (227)
T 3v7o_A 18 PETHINLKVS---DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIR----IQADQTPEDLDMEDNDII 87 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEe---CCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEE---CCEe----cCCCCCHHHcCCCCCCEE
Confidence 3446667772 35557788999999999999999999999999999954 4764 256789999999999999
Q ss_pred EEEeC
Q 031156 90 HVIDL 94 (165)
Q Consensus 90 hV~D~ 94 (165)
+|.-.
T Consensus 88 DV~le 92 (227)
T 3v7o_A 88 EAHRE 92 (227)
T ss_dssp -----
T ss_pred EEEec
Confidence 99874
No 109
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.60 E-value=0.0098 Score=40.55 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=41.8
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCC
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT 66 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~ 66 (165)
.++|.|... +..-++++++++..+|.++|....+++++..+|.|++.++.
T Consensus 5 ~~~VKV~~~----~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~ 54 (83)
T 1oey_A 5 AYTLKVHYK----YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSN 54 (83)
T ss_dssp CEEEEEESS----SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCS
T ss_pred cEEEEEEEE----EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCC
Confidence 356666633 47889999999999999999999999999999999885443
No 110
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.41 E-value=0.045 Score=39.66 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=62.2
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
...++|.|+..+. ....++|+.+.||.+|..-|... |.++..-.|.- .-..+.+. ..+.+++|.+.|+.+...|+
T Consensus 41 ~~~t~IqIRlPdG--~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t-~fPrk~l~-~~d~~~TL~e~gL~psa~Li 115 (124)
T 1wj4_A 41 GPKAQLMLRYPDG--KREQITLPEQAKLLALVKHVQSK-GYPNERFELLT-NFPRRKLS-HLDYDITLQEAGLCPQETVF 115 (124)
T ss_dssp SCEEEEEEECTTS--CEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEEC-SSSCCEET-SSCSSSCTTTTTCCSSBCCE
T ss_pred CCcEEEEEECCCC--CEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEec-CCCCcCCc-cCCCCCCHHHCCCCCceEEE
Confidence 4578899997554 47899999999999999999887 87776666531 11223321 13568999999999999999
Q ss_pred EEeCCCCc
Q 031156 91 VIDLDPSS 98 (165)
Q Consensus 91 V~D~~p~s 98 (165)
|....+.+
T Consensus 116 v~~~d~~~ 123 (124)
T 1wj4_A 116 VQESGPSS 123 (124)
T ss_dssp EEECCSTT
T ss_pred EEEccCCC
Confidence 99876543
No 111
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.39 E-value=0.027 Score=39.34 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=59.8
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
....|+|.|...+.. ....+++.++.++.-|-.......|+++...+|. | +|.. ..++.|..++++++|.+|
T Consensus 22 ~~~~I~LkV~~~dg~-~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~-F--DG~r----I~~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKH-QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFF-F--DGTK----LSGRELPADLGMESGDLI 93 (97)
T ss_dssp SCSEEEEEEEESSSS-CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEE-E--TTEE----CCSCSCHHHHTCCTTEEE
T ss_pred CCCeEEEEEEcCCCC-EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-E--CCEE----cCCCCCHHHcCCCCCCEE
Confidence 345788888854431 2467888999999999999999999999999995 4 5764 256778999999999999
Q ss_pred EEE
Q 031156 90 HVI 92 (165)
Q Consensus 90 hV~ 92 (165)
.|.
T Consensus 94 Dv~ 96 (97)
T 2jxx_A 94 EVW 96 (97)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 112
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.36 E-value=0.013 Score=40.34 Aligned_cols=79 Identities=11% Similarity=0.217 Sum_probs=54.7
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCc-eEEEEEcCCCCeeeccCCC---CCccCCC--CCC
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNS-MSLELYDDTNTKVAALTDN---SRPLGFY--SPL 84 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~-q~L~l~~~~g~~i~~l~dD---~~~L~~y--gv~ 84 (165)
.+.|+|.+... +...-++++++++..+|++||..++++++.+ ..|.+.|.+|.++. +..| +..|..| +=.
T Consensus 4 ~~~vkvK~~~~---gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~it-isSd~EL~eAl~l~~~n~~ 79 (89)
T 1vd2_A 4 GSQVRVKAYYR---GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCT-VSSQLELEEAFRLYELNKD 79 (89)
T ss_dssp SSCEEEEEESS---SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEE-CCSHHHHHHHHHHHHHTSC
T ss_pred CCeEEEEEEeC---CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCccc-ccCHHHHHHHHHHHHccCC
Confidence 44677777743 4467889999999999999999999998655 68888888787654 3233 2223333 334
Q ss_pred CCcEEEEEe
Q 031156 85 QGYRLHVID 93 (165)
Q Consensus 85 dg~~IhV~D 93 (165)
..-+|||..
T Consensus 80 ~~l~ihvf~ 88 (89)
T 1vd2_A 80 SELLIHVFP 88 (89)
T ss_dssp CCEEEEEEE
T ss_pred CCEEEEEcc
Confidence 445777753
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.19 E-value=0.067 Score=37.77 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=61.0
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCC-CCeeeccCCCCCccCCCCCCCCcEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDT-NTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~-g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
...++|.|+..+. ....++|+.+.||.+|..-|....|.+...-.|. ..- .+.+. ..+.+++|.+.|+.+...|
T Consensus 11 ~~~t~IqIRlpdG--~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~--t~fPrk~l~-~~d~~~TL~elgL~psa~L 85 (109)
T 2dzk_A 11 STIARIQFRLPDG--SSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLA--TMFPRREFT-REDYKRRLLDLELAPSASV 85 (109)
T ss_dssp SCCEEEEEECSSS--CEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEE--CSSSCCBCC-TTTTTSBTGGGTCSSEEEE
T ss_pred CCcEEEEEECCCC--CEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEE--cCCCCcCCc-ccccCCCHHHCCCCCceEE
Confidence 4578999997654 4889999999999999999999988776665653 222 22221 1245899999999999999
Q ss_pred EEEeCC
Q 031156 90 HVIDLD 95 (165)
Q Consensus 90 hV~D~~ 95 (165)
+|....
T Consensus 86 ~v~~~~ 91 (109)
T 2dzk_A 86 VLLPAG 91 (109)
T ss_dssp EEECCS
T ss_pred EEEECc
Confidence 999864
No 114
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.05 E-value=0.053 Score=40.25 Aligned_cols=86 Identities=10% Similarity=0.105 Sum_probs=53.6
Q ss_pred cCCccEEEEEEecCCC----CceEEEEecCCCCHHHHHHHHHHHH--CCC------CCceEEEEEcCC-CCeeeccCCCC
Q 031156 9 EGDESVLLRVTHSNLK----SFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDT-NTKVAALTDNS 75 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~----~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------~~~q~L~l~~~~-g~~i~~l~dD~ 75 (165)
+....++|.|.....+ .-...+++=.-+||.|+|+||-..+ |+| +..+.|..+.+. |+.+- .+.|.
T Consensus 20 vey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL-~D~D~ 98 (138)
T 2r2o_A 20 VEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLIL-SDEDV 98 (138)
T ss_dssp --CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEE-CSSST
T ss_pred ceeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEe-eccCC
Confidence 3345677777654322 1246788888899999999987654 443 345678776433 22211 12222
Q ss_pred C-----------ccCCCCCCCCcEEEEEeCC
Q 031156 76 R-----------PLGFYSPLQGYRLHVIDLD 95 (165)
Q Consensus 76 ~-----------~L~~ygv~dg~~IhV~D~~ 95 (165)
. ||..|+|.||++|-++-..
T Consensus 99 tS~~~~~wkrLNTL~HY~V~Dga~l~l~~~~ 129 (138)
T 2r2o_A 99 TSEVQGLWRRLNTLQHYKVPDGATVALVPCL 129 (138)
T ss_dssp TCCEETTEEECCBHHHHTCCTTCEEEEEEC-
T ss_pred cccccCCceeecchhccCCCCCCEEEEEECC
Confidence 2 7999999999999988754
No 115
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.74 E-value=0.066 Score=38.33 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=50.5
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHH--CCC------CCceEEEEEcC-CCCeeeccCC-C------
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDD-TNTKVAALTD-N------ 74 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------~~~q~L~l~~~-~g~~i~~l~d-D------ 74 (165)
...++|++.......-...+++-.-.||.|+|+||-..+ |+| +..+.|..+.+ .|. + |.| |
T Consensus 9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~-i--L~D~D~ts~~~ 85 (111)
T 4e71_A 9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQ-I--LSDLDLTSQRE 85 (111)
T ss_dssp CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCE-E--CCSSCTTSCC-
T ss_pred eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCc-c--ccccCccceec
Confidence 346677776544333457788888899999999975432 444 34677887643 233 2 222 1
Q ss_pred -----CCccCCCCCCCCcEEEEEe
Q 031156 75 -----SRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 75 -----~~~L~~ygv~dg~~IhV~D 93 (165)
--||..|+|.||++|-++-
T Consensus 86 ~~wkrLNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 86 GRWKRVNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp --CCCCCBHHHHTCCTTCEEEEEE
T ss_pred CcceEecchhhcCCCCCCEEEEEe
Confidence 1278999999999997753
No 116
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.69 E-value=0.022 Score=41.77 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=53.3
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCC-ceEEEEEcCCC----------------------------
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTN---------------------------- 65 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~-~q~L~l~~~~g---------------------------- 65 (165)
.|.|+-. .+....++++.+.||++++.-|-...||++. .--|.......
T Consensus 13 ~LkV~ll--Dg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 13 PLKIRML--DGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEEECT--TSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred cEEEEcC--CCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHH
Confidence 4667754 4457889999999999999999999999955 11221111000
Q ss_pred ----CeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 66 ----TKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 66 ----~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
.-..+| +++++|.++||.+|.+|.+--.
T Consensus 91 L~~dd~~~WL-D~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 91 LHTDDELNWL-DHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CCCSSSEEEE-CSSSCHHHHTCCTTSEEEEEES
T ss_pred hcccCCCCcc-cCCCcHHHcCCCCCCEEEEEEE
Confidence 011234 7799999999999999877553
No 117
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.43 E-value=0.13 Score=37.56 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=45.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHH--CCC------CCceEEEEEcCC-CCeeeccCC-C-----------CCccCCCCCCC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDT-NTKVAALTD-N-----------SRPLGFYSPLQ 85 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~t--Gip------~~~q~L~l~~~~-g~~i~~l~d-D-----------~~~L~~ygv~d 85 (165)
...+++=.-.||.|+|+||-..+ |+| +..+.|.++.+. |..+ |.| | --||..|+|.|
T Consensus 18 ~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~i--L~D~D~ts~~~~~~krLNTL~HY~V~d 95 (127)
T 3h6n_A 18 SLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYI--LRDLDDTSVVEDGRKKLNTLAHYKIPE 95 (127)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEE--CCSSSTTSCEETTEECCCBTTTTTCCT
T ss_pred ceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceE--eecCCCcceecCceeEeccccccCCCC
Confidence 46677777889999999975542 444 467889887432 3221 222 2 23799999999
Q ss_pred CcEEEEEeC
Q 031156 86 GYRLHVIDL 94 (165)
Q Consensus 86 g~~IhV~D~ 94 (165)
|++|-++-.
T Consensus 96 gatv~l~~~ 104 (127)
T 3h6n_A 96 GASLAMSLI 104 (127)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEc
Confidence 999988754
No 118
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.28 E-value=0.13 Score=36.24 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=59.2
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
...++|.|+..+. ....++|..+.||.+|..=|... |..+..-+|.- .=..+.+. .+.+.+|.+.|+.+...|+
T Consensus 21 ~~~~~IqiRlpdG--~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t-~fPrk~l~--~d~~~TL~e~gL~p~a~L~ 94 (109)
T 2cr5_A 21 EEVVTVALRCPNG--RVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLST-SFPRRALE--VEGGSSLEDIGITVDTVLN 94 (109)
T ss_dssp SSEEEEEEECTTS--CEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEEC-SSSCCBCC--CCSSCBHHHHTCSSCEEEE
T ss_pred CCcEEEEEECCCC--CEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEe-CCCCcCCC--CCCCCCHHHcCCCCCeEEE
Confidence 4588999997654 47899999999999999999865 55555555532 10123321 2568999999999999999
Q ss_pred EEeCCC
Q 031156 91 VIDLDP 96 (165)
Q Consensus 91 V~D~~p 96 (165)
|....+
T Consensus 95 Ve~~~~ 100 (109)
T 2cr5_A 95 VEEKEQ 100 (109)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 998764
No 119
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=95.27 E-value=0.038 Score=38.72 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=44.1
Q ss_pred CccEEEEEEecCCC-----CceEEEEecCCCCHHHHHHHHHHHHCCCCC-----ceEEEEEcCCCCeee
Q 031156 11 DESVLLRVTHSNLK-----SFSADVRFPLQMSVESVKDKLWRKCGTSVN-----SMSLELYDDTNTKVA 69 (165)
Q Consensus 11 ~~~V~v~It~s~l~-----~~~~e~r~~~~~TV~~LK~KLe~~tGip~~-----~q~L~l~~~~g~~i~ 69 (165)
.+.|+|.|...+.+ +-...+.++++++..+|..||...+++++. ..+|.++|.+|.++.
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vt 71 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV 71 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEE
T ss_pred CccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEE
Confidence 34477777755321 224678999999999999999999997632 358999998887664
No 120
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=95.07 E-value=0.0038 Score=53.23 Aligned_cols=76 Identities=7% Similarity=0.070 Sum_probs=0.0
Q ss_pred cCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcE
Q 031156 9 EGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYR 88 (165)
Q Consensus 9 ~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~ 88 (165)
.++..|+|.|.. .+....+++.++.++..|+.......|+++.++++.+ +|+. ..++.|..++++++|++
T Consensus 17 ~~~~~I~LKV~~---~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlF---dG~r----I~~~~TP~~L~MEDgD~ 86 (360)
T 3ix6_A 17 KPETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIR----IQADQTPEDLDMEDNDI 86 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEEec---CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEE---CCeE----CCCCCChHHcCCCccch
Confidence 345677788873 3446778899999999999999999999999999964 4764 25678999999999999
Q ss_pred EEEEeC
Q 031156 89 LHVIDL 94 (165)
Q Consensus 89 IhV~D~ 94 (165)
|+|...
T Consensus 87 Idv~~~ 92 (360)
T 3ix6_A 87 IEAHRE 92 (360)
T ss_dssp ------
T ss_pred hhhhhc
Confidence 999875
No 121
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.02 E-value=0.16 Score=36.69 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=51.5
Q ss_pred CccEEEEEEecCCC-CceEEEEecCCCCHHHHHHHHHHH--HCCCC------CceEEEEEcCC-CCeeeccCCC------
Q 031156 11 DESVLLRVTHSNLK-SFSADVRFPLQMSVESVKDKLWRK--CGTSV------NSMSLELYDDT-NTKVAALTDN------ 74 (165)
Q Consensus 11 ~~~V~v~It~s~l~-~~~~e~r~~~~~TV~~LK~KLe~~--tGip~------~~q~L~l~~~~-g~~i~~l~dD------ 74 (165)
...++|++...... .-...+++-.-.||.|+|+||-.. -|+|. ..+.|.++.+. |..+- .+.|
T Consensus 11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL-~D~D~ts~~~ 89 (117)
T 4e74_A 11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMIL-QDEDITTKIE 89 (117)
T ss_dssp CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEE-CSSSTTCCC-
T ss_pred cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEe-ecCCCccEec
Confidence 34566666532211 124667777788999999997544 25553 46788887542 33221 1112
Q ss_pred -----CCccCCCCCCCCcEEEEEeC
Q 031156 75 -----SRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 75 -----~~~L~~ygv~dg~~IhV~D~ 94 (165)
--||..|+|.+|++|-++-.
T Consensus 90 ~~wkrLNTL~HY~V~dgatl~l~~~ 114 (117)
T 4e74_A 90 NDWKRLNTLAHYQVPDGSVVALVSK 114 (117)
T ss_dssp --CCCCCBHHHHTCCTTCEEEEEEC
T ss_pred CcceEeccccccCCCCCCEEEEEeC
Confidence 12789999999999988753
No 122
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=94.30 E-value=0.0077 Score=51.13 Aligned_cols=75 Identities=7% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
+...|+|.|.. .+....+++.++.++.-|+.......|+++.++++.| +|+.| .++.|..++++++|.+|
T Consensus 27 ~~~~i~lkv~~---~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f---~G~~i----~~~~Tp~~l~med~d~i 96 (389)
T 4da1_A 27 PETHINLKVSD---GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI----QADQAPEDLDMEDNDII 96 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec---CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEc----CCCCCHHHcCCCCCCEe
Confidence 34567777763 3345678999999999999999999999999999965 47642 57789999999999999
Q ss_pred EEEeC
Q 031156 90 HVIDL 94 (165)
Q Consensus 90 hV~D~ 94 (165)
+|.-.
T Consensus 97 ~~~~~ 101 (389)
T 4da1_A 97 EAHRE 101 (389)
T ss_dssp -----
T ss_pred eeeec
Confidence 98874
No 123
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.25 E-value=0.16 Score=42.45 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=50.0
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHC----CCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 26 FSADVRFPLQMSVESVKDKLWRKCG----TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tG----ip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
..-...|++++||.+.+.+|..... .+++.--|.+.+.+++.-.+| ++.++|..|++++|+.|+..
T Consensus 13 ~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 13 VVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGGGGTCCTTCEEEEE
T ss_pred eeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHHHhCCCCCceeecc
Confidence 3567899999999999999866653 367777887766555544456 45669999999999877554
No 124
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=93.71 E-value=1.2 Score=32.46 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=49.4
Q ss_pred cEEEEEEe---cCCC----CceEEEEecCCCCHHHHHHHHHH-HH---CCCC----CceEEEEEcCCCCeeeccCCC---
Q 031156 13 SVLLRVTH---SNLK----SFSADVRFPLQMSVESVKDKLWR-KC---GTSV----NSMSLELYDDTNTKVAALTDN--- 74 (165)
Q Consensus 13 ~V~v~It~---s~l~----~~~~e~r~~~~~TV~~LK~KLe~-~t---Gip~----~~q~L~l~~~~g~~i~~l~dD--- 74 (165)
.++|.|.. .... .-...+++-.-.||.|+|+||-. +. |+|- ..|.|.++.+.+..+ -.+.|
T Consensus 19 tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~-L~D~D~tS 97 (126)
T 3kuz_A 19 TVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKE-LLDIDSSS 97 (126)
T ss_dssp EEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEE-ECSSCTTC
T ss_pred EEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcce-eeccCCcc
Confidence 45777765 2211 12466777788999999999643 33 8864 467787764322111 01111
Q ss_pred ---------CCccCCCCCCCCcEEEEE
Q 031156 75 ---------SRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 75 ---------~~~L~~ygv~dg~~IhV~ 92 (165)
--||..|+|.||++|-++
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dgatlal~ 124 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNGSTIKVF 124 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTTCEEEEE
T ss_pred eEecCCeeEeccccccCCCCCCEEEEe
Confidence 236889999999999775
No 125
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.44 E-value=0.1 Score=38.09 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=32.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEc
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
...|+..++|+.+|+..|...+|+|+..|||.+..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~ 92 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ 92 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEee
Confidence 45799999999999999999999999999999874
No 126
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=93.31 E-value=0.61 Score=32.36 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=59.5
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLH 90 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~Ih 90 (165)
...|+|.|. .. +.....++-.+..+.-|..-.....|+++++.++ +| +|..| .++.|-.+.++++|.+|.
T Consensus 19 ~~~IniKV~-~~--g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirF-lf--DG~rI----~~~~TP~~L~meD~DiID 88 (95)
T 2l76_A 19 PRLFPLKIR-CR--ADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILL-LF--GETEL----SPTATPRTLKLGVADIID 88 (95)
T ss_dssp CCCEEEEEE-CS--SSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEE-EE--TTEEC----CTTSCHHHHTCCSSCEEE
T ss_pred CCeEEEEEE-cC--CcEEEEEEecCChHHHHHHHHHhhcCCChhhEEE-EE--CCcCC----CCCCCHhHcCCCCCCEEE
Confidence 346888888 33 3456677888999999999999999999999998 45 56542 566677888999999999
Q ss_pred EEeCC
Q 031156 91 VIDLD 95 (165)
Q Consensus 91 V~D~~ 95 (165)
|.-+.
T Consensus 89 ~~~~~ 93 (95)
T 2l76_A 89 CVVLT 93 (95)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88753
No 127
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=92.91 E-value=0.11 Score=34.75 Aligned_cols=43 Identities=7% Similarity=0.007 Sum_probs=36.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCC-----CCceEEEEEcCCCCeee
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTS-----VNSMSLELYDDTNTKVA 69 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip-----~~~q~L~l~~~~g~~i~ 69 (165)
...++++++++..+|..||...++.. ....+|.++|.+|..+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vt 50 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV 50 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEE
Confidence 35689999999999999999999976 46789999998887664
No 128
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.49 E-value=0.83 Score=31.22 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=61.5
Q ss_pred cccCCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCC
Q 031156 7 QIEGDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (165)
Q Consensus 7 ~~~~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg 86 (165)
..+++.+|+|.|.-.-.. -.-+|++|..++.+|=--|-..+-+.|..-.| +.+.... . -+|=+.+|.+||++.
T Consensus 4 ~~~PE~TvRLvVNy~~tQ--KtVvRVSP~vpL~ellp~IC~Kcefdp~~~~L-l~d~~~~--e-~LdLskSLndlgirE- 76 (91)
T 2daj_A 4 GSSGEKTVRVVINFKKTQ--KTIVRVSPHASLQELAPIICSKCEFDPLHTLL-LKDYQSQ--E-PLDLTKSLNDLGLRE- 76 (91)
T ss_dssp CSCCCSCEEEEEEETTTE--EEEEEECSSSCTTTHHHHHHHHTTCCTTSEEE-ESCSSCC--C-BCCTTSCHHHHTCSE-
T ss_pred CCCCccEEEEEEeecCcc--eeEEEeCCCCcHHHHHHHHhhcccCChhhEEE-ecCCCCC--c-ccchhcchhhhhhhh-
Confidence 357888999999854322 46689999999999999999999999999776 5542111 1 135578999999996
Q ss_pred cEEEEEeCCC
Q 031156 87 YRLHVIDLDP 96 (165)
Q Consensus 87 ~~IhV~D~~p 96 (165)
+.+.|..-
T Consensus 77 --Lya~d~~~ 84 (91)
T 2daj_A 77 --LYAMDVNR 84 (91)
T ss_dssp --EEEEECCC
T ss_pred --hheecccc
Confidence 88888764
No 129
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=90.90 E-value=0.71 Score=33.26 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=52.3
Q ss_pred CccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHH-HCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 11 DESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK-CGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~-tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
...++|.|+..+. ....++|+.+.||.+|..-|... .|.+...-.| ...--+. .+.+++.+|.+.|+.+...|
T Consensus 50 ~~~t~IqIRlpdG--~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L--~t~fPrk--~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADG--GRLVQKFNHSHRISDIRLFIVDARPAMAATSFVL--MTTFPNK--ELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTT--TEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEE--EETTTTE--ECCSTTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCC--CEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEE--ecCCCCC--CCCCCCCcHHHCCCcCceEE
Confidence 3567888887654 47899999999999999999886 3444444455 3222222 24566899999999986654
Q ss_pred E
Q 031156 90 H 90 (165)
Q Consensus 90 h 90 (165)
.
T Consensus 124 ~ 124 (127)
T 1s3s_G 124 Q 124 (127)
T ss_dssp E
T ss_pred E
Confidence 3
No 130
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=90.18 E-value=3.6 Score=37.23 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=54.0
Q ss_pred CCccEEEEEEecCC-CCceEEEEecCCCCHHHHHHHHHHHH--CCC------CCceEEEEEcCC-CCeeeccCCC-----
Q 031156 10 GDESVLLRVTHSNL-KSFSADVRFPLQMSVESVKDKLWRKC--GTS------VNSMSLELYDDT-NTKVAALTDN----- 74 (165)
Q Consensus 10 ~~~~V~v~It~s~l-~~~~~e~r~~~~~TV~~LK~KLe~~t--Gip------~~~q~L~l~~~~-g~~i~~l~dD----- 74 (165)
.-..++|.|..... ..-...+++-.-+||.|+|+||-... |+| +..+.|..+.+. |..+- .+.|
T Consensus 230 e~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL-~D~D~ts~~ 308 (627)
T 3ig3_A 230 DYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIIL-QDEDITTKI 308 (627)
T ss_dssp CCCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEE-CSSSTTCCE
T ss_pred cceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceee-ccCCccccc
Confidence 33466777764432 12356778888899999999976543 443 456778876532 33211 1222
Q ss_pred ------CCccCCCCCCCCcEEEEEeC
Q 031156 75 ------SRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 75 ------~~~L~~ygv~dg~~IhV~D~ 94 (165)
--||..|+|.||++|-++-.
T Consensus 309 ~~~wkrLNTL~HY~V~Dga~v~L~p~ 334 (627)
T 3ig3_A 309 ECDWKRVNSLAHYQVTDGSLVALVPK 334 (627)
T ss_dssp ETTEEECCBTTTTTCCTTCEEEEEEC
T ss_pred cCceeEecchhhcCCCCCceEEEEec
Confidence 12799999999999988764
No 131
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=89.26 E-value=3 Score=37.90 Aligned_cols=84 Identities=11% Similarity=0.131 Sum_probs=52.2
Q ss_pred CCccEEEEEEecCC----CCceEEEEecCCCCHHHHHHHHHHH--HCCC------CCceEEEEEcCC-CCeeeccCCC--
Q 031156 10 GDESVLLRVTHSNL----KSFSADVRFPLQMSVESVKDKLWRK--CGTS------VNSMSLELYDDT-NTKVAALTDN-- 74 (165)
Q Consensus 10 ~~~~V~v~It~s~l----~~~~~e~r~~~~~TV~~LK~KLe~~--tGip------~~~q~L~l~~~~-g~~i~~l~dD-- 74 (165)
.-..++|.|..... ..-...+++-.-.||.|+|+||-.. -|+| +..+.|..+.+. |..+- .+.|
T Consensus 254 e~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL-~D~D~t 332 (644)
T 3hm6_X 254 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLIL-SDEDVT 332 (644)
T ss_dssp CCCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEE-CSSSTT
T ss_pred cceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceee-cccCcc
Confidence 34466777764221 1224677888889999999998633 2444 356678776432 32210 1112
Q ss_pred ---------CCccCCCCCCCCcEEEEEeC
Q 031156 75 ---------SRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 75 ---------~~~L~~ygv~dg~~IhV~D~ 94 (165)
--||+.|+|.||++|-++-.
T Consensus 333 s~~~~~wkrLNTL~HY~V~dga~v~L~p~ 361 (644)
T 3hm6_X 333 SEVQGLWRRLNTLQHYKVPDGATVALVPC 361 (644)
T ss_dssp CCEETTEEECCBTTTTTCCTTCEEEEEEC
T ss_pred ceecCcceeecchhhcCCCCCcEEEEEec
Confidence 23799999999999988753
No 132
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=86.97 E-value=2.5 Score=30.72 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCceEEEEEc-CCCCeeec--cC-CCCCccCCCCCCCCcEEEEEeCC
Q 031156 35 QMSVESVKDKLWRKCGTSVNSMSLELYD-DTNTKVAA--LT-DNSRPLGFYSPLQGYRLHVIDLD 95 (165)
Q Consensus 35 ~~TV~~LK~KLe~~tGip~~~q~L~l~~-~~g~~i~~--l~-dD~~~L~~ygv~dg~~IhV~D~~ 95 (165)
.+|+++|=+.|....|.+- . +.+.+ .+.+.+.. .+ +=.++|.+.|++.|+.|.|.|-+
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-e--iSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-D--ISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-S--EEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEESC
T ss_pred ccCHHHHHHHHHHhcCCCC-c--EEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEccc
Confidence 4799999888988889763 2 22221 11222211 12 22789999999999999999965
No 133
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=86.66 E-value=3.7 Score=27.81 Aligned_cols=45 Identities=7% Similarity=0.082 Sum_probs=34.3
Q ss_pred ccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEE
Q 031156 12 ESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELY 61 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~ 61 (165)
+.++|-+--.. --+-+|+|++++..+||.||..+..+. ...|.++
T Consensus 11 ~~~KVK~yy~D---DIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~y 55 (85)
T 1ip9_A 11 KTTKIKFYYKD---DIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTK 55 (85)
T ss_dssp CCEEEEECBTT---CCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEEC
T ss_pred CceEEEEEecC---cEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEe
Confidence 34666666433 357899999999999999999999994 5555554
No 134
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=85.85 E-value=0.94 Score=40.07 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=32.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEc
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
...|+..++|+.+||+.+...+|+|+++|||++..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~ 72 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ 72 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 36799999999999999999999999999999874
No 135
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=82.76 E-value=3.3 Score=28.34 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=56.6
Q ss_pred EEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEeC
Q 031156 15 LLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 15 ~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
.|.|-..+. +...+++.|+.|+.++=+.--.++|++++.-.|.+ .++. .|=+.++..-|+-.|+++.++-.
T Consensus 11 ~v~Vl~~n~--rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh---~~k~----lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 11 AVSVLAPNG--RRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF---QRTV----LDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp CEEEECTTS--CEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE---TTEE----ESSSCBHHHHCCCSSCEEEEECS
T ss_pred EEEEEcCCC--cEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe---CCEe----ccccceeEecCCCCCCEEEEEEc
Confidence 666765444 47889999999999998888889999998877764 2443 24466778889999999999886
Q ss_pred C
Q 031156 95 D 95 (165)
Q Consensus 95 ~ 95 (165)
.
T Consensus 82 s 82 (90)
T 2al3_A 82 S 82 (90)
T ss_dssp S
T ss_pred c
Confidence 5
No 136
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=75.38 E-value=16 Score=24.69 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=40.2
Q ss_pred CccEEEEEEecCCCCceEEEEe--cCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeee
Q 031156 11 DESVLLRVTHSNLKSFSADVRF--PLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 11 ~~~V~v~It~s~l~~~~~e~r~--~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~ 69 (165)
+..|.+.|+... -.....+ +...|+.+|...+...+|++ ...+.+.|.+|..++
T Consensus 4 ~~~v~lkV~f~g---e~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~ 59 (87)
T 2bkf_A 4 EPQVTLNVTFKN---EIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVS 59 (87)
T ss_dssp CCCEEEEEEETT---EEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEE
T ss_pred CceEEEEEEEcC---CeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEE
Confidence 346778888643 2333334 45999999999999999997 668889988777654
No 137
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=71.77 E-value=2.7 Score=30.14 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHH-CCCCCceEEEEEcCCCCeee
Q 031156 36 MSVESVKDKLWRKC-GTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 36 ~TV~~LK~KLe~~t-Gip~~~q~L~l~~~~g~~i~ 69 (165)
.|..+|+.++..++ ++....-.|.+.|.+|..|.
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlIt 91 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVA 91 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEE
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEE
Confidence 48999999999999 77777778888988888664
No 138
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=71.41 E-value=30 Score=28.10 Aligned_cols=63 Identities=6% Similarity=0.148 Sum_probs=41.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCC-cEEEEEeC
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG-YRLHVIDL 94 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg-~~IhV~D~ 94 (165)
...+-..+..|+.+|+++++..||+++..|.|. + .+..+ ..+.......|+-... .-|.+...
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l-~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (396)
T 4eut_A 323 AHKIYIHSYNTATIFHELVYKQTKIISSNQELI-Y--EGRRL--VLEPGRLAQHFPKTTEENPIFVVSR 386 (396)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEE-S--SSSEE--CCCSSCBTTSSCCCCSSSCEEEEEC
T ss_pred EEEEEcCchhHHHHHHHHHHHhcCCChhhhHHH-h--cCCCC--CCCCCCccccCCCCCCCCCeEEEec
Confidence 566778899999999999999999999999994 4 22211 2344555555553322 33444443
No 139
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=71.04 E-value=20 Score=24.95 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=39.6
Q ss_pred ccEEEEEEecCCCCceEEEE--ecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeee
Q 031156 12 ESVLLRVTHSNLKSFSADVR--FPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 12 ~~V~v~It~s~l~~~~~e~r--~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~ 69 (165)
..|.+.|+... -...+. ++...|+.+|...+...+|++ ..+|.|.|.+|..+.
T Consensus 13 ~~v~lkV~f~g---e~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~ 67 (101)
T 1wj6_A 13 PQVTLNVTFKN---EIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVS 67 (101)
T ss_dssp SCEEEEEEETT---EEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEEC
T ss_pred ccEEEEEEEcC---CeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEE
Confidence 36788888643 233333 455999999999999999997 557888988777654
No 140
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=69.95 E-value=4.1 Score=28.16 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=40.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHH--HCCCCC---------ceEEEEEcCCCCeeeccC--CCCCccCCCCCCCCcEEEEEe
Q 031156 27 SADVRFPLQMSVESVKDKLWRK--CGTSVN---------SMSLELYDDTNTKVAALT--DNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~--tGip~~---------~q~L~l~~~~g~~i~~l~--dD~~~L~~ygv~dg~~IhV~D 93 (165)
...+.+++++|+.+|=+.|... .-+.-. ...|++..+ ..+.... +=.++|.+.|+.+|..|+|.|
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~p--p~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSV--TSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSC--HHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCc--HHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 4567899999999998888762 222111 223322100 0010000 115678999999999999988
Q ss_pred CC
Q 031156 94 LD 95 (165)
Q Consensus 94 ~~ 95 (165)
..
T Consensus 84 ~~ 85 (98)
T 1y8x_B 84 VT 85 (98)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 141
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=67.47 E-value=3 Score=29.06 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHH-CCCCCceEEEEEcCCCCeee
Q 031156 36 MSVESVKDKLWRKC-GTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 36 ~TV~~LK~KLe~~t-Gip~~~q~L~l~~~~g~~i~ 69 (165)
.|..+|+.++..++ ++....-.|.+.|.+|..|.
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlIt 76 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVA 76 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEE
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEE
Confidence 48999999999996 56666678888888888664
No 142
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=65.40 E-value=15 Score=22.66 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=35.0
Q ss_pred EEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++.++...||.+|...| |+++....+. . +|..+... ...+..+++|++|.++-
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~va-v--N~~~v~~~-----~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALA-I--NQQIVPRE-----QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEE-E--TTEEECHH-----HHTTCCCCTTEEECEEE
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEE-E--CCEECCch-----hcCCcCCCCCCEEEEEe
Confidence 45778889999999886 6776655443 3 45543211 12345789999998875
No 143
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=64.92 E-value=18 Score=24.11 Aligned_cols=54 Identities=6% Similarity=0.060 Sum_probs=35.8
Q ss_pred EEEEecCC-CCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 28 ADVRFPLQ-MSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 28 ~e~r~~~~-~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.++.++.. .||.+|-+.| |+++..-.+.+ +|..+.. ....+..+++|++|-++-
T Consensus 28 e~~el~~~~~Tv~dLL~~L----~~~~~~vaVav---Ng~iV~~-----~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 28 KDVKWKKDTGTIQDLLASY----QLENKIVIVER---NKEIIGK-----ERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEECCSSSCCBHHHHHHHT----TCTTSCCEEEE---TTEEECG-----GGTTTSBCCSSSEEEEEE
T ss_pred EEEECCCCCCcHHHHHHHh----CCCCCCEEEEE---CCEECCh-----hhcCCcCCCCCCEEEEEc
Confidence 35677887 9999998886 67766554433 4554321 123345689999998874
No 144
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=64.78 E-value=23 Score=22.16 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=35.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
..++.++...|+.+|...| |+++..-.+ .. +|..+ ..+. .+++|++|-++-
T Consensus 15 ~~~~~~~~~~tv~~Ll~~l----~~~~~~v~v-av--N~~~v---~~~~------~L~~gD~V~ii~ 65 (70)
T 1ryj_A 15 KKILESGAPRRIKDVLGEL----EIPIETVVV-KK--NGQIV---IDEE------EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEESSCCBHHHHHHHT----TCCTTTEEE-EE--TTEEC---CTTS------BCCTTCEEEEEE
T ss_pred ceeEECCCCCcHHHHHHHh----CCCCCCEEE-EE--CCEEC---CCcc------cCCCCCEEEEEe
Confidence 3557888889999999886 677766543 33 45542 1222 689999998875
No 145
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=64.47 E-value=22 Score=31.18 Aligned_cols=66 Identities=8% Similarity=-0.061 Sum_probs=43.3
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCC---CCceEEEEEcCCCCeeeccCCCCCccCC
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTS---VNSMSLELYDDTNTKVAALTDNSRPLGF 80 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip---~~~q~L~l~~~~g~~i~~l~dD~~~L~~ 80 (165)
.++|...++.+.-...++.++++-||++|.+.|....|++ ...+||. -..+++....+. ++.+|..
T Consensus 339 ~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~-ev~~~ki~ki~~-~~~~i~~ 407 (530)
T 2ylm_A 339 SFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLL-EIVSYKIIGVHQ-EDELLEC 407 (530)
T ss_dssp CEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEE-EEETTEEEEEEC-TTSBGGG
T ss_pred eEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEE-EEECCEEEEecC-CCccccc
Confidence 6777666555443356777899999999999999999998 4666652 112566444333 3334443
No 146
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=61.55 E-value=26 Score=23.60 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeee
Q 031156 34 LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVA 69 (165)
Q Consensus 34 ~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~ 69 (165)
...+..+|..+++.+..++...-.+.+.|.+|..+.
T Consensus 26 ~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlp 61 (86)
T 1wmh_B 26 SVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLP 61 (86)
T ss_dssp GCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEE
T ss_pred CCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEee
Confidence 348999999999999999888888888888888665
No 147
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=61.28 E-value=29 Score=22.18 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=35.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
..++.++...||++|=.+ .|+|+..- +.+. +|..+ ..|. +.+|++|-|+-
T Consensus 12 ~~~~ev~~g~Tv~dLL~~----Lgl~~~~V-vV~v--NG~~v---~~d~-------~l~GD~VeIv~ 61 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVRA----VDLSPHEV-TVLV--DGRPV---PEDQ-------SVEVDRVKVLR 61 (74)
T ss_dssp EEEEECSTTCSHHHHHHT----TCCCSSCC-CEEC--CCCCC---CTTS-------SSCCCCEEECS
T ss_pred ceeEEcCCCCcHHHHHHH----cCCCcceE-EEEE--CCEEC---CHHH-------CCCCCEEEEEE
Confidence 467899999999988665 89999988 4444 56642 2222 23588887765
No 148
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=60.08 E-value=5.8 Score=36.12 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=31.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEE
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSMSLEL 60 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l 60 (165)
..+..+.+..|+.+|+.+|+..||||+..|.|.+
T Consensus 323 ~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~ 356 (676)
T 3qa8_A 323 VHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQ 356 (676)
T ss_dssp CCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEES
T ss_pred cceeecCCCccHHHHHHHHHHHhCCCHHHHHHHh
Confidence 5678899999999999999999999999999965
No 149
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=54.72 E-value=47 Score=22.53 Aligned_cols=70 Identities=4% Similarity=0.055 Sum_probs=46.6
Q ss_pred ccEEEEEEecCCC-CceEEEEecCCCCHHHHHHHHHH---HHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCc
Q 031156 12 ESVLLRVTHSNLK-SFSADVRFPLQMSVESVKDKLWR---KCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGY 87 (165)
Q Consensus 12 ~~V~v~It~s~l~-~~~~e~r~~~~~TV~~LK~KLe~---~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~ 87 (165)
..+.|.|....-. .+...+.++.+.||.++=..+-. ...|......+.++ |+.+. .++.+++|+
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vn---g~~v~---------~d~~L~dGD 78 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIF---SRPIK---------LTDVLKEGD 78 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEE---ECSCC---------TTCBCCTTC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEc---CEECC---------CCccCCCCC
Confidence 4677877765433 23577889999999998777542 33455545666665 55321 456689999
Q ss_pred EEEEEe
Q 031156 88 RLHVID 93 (165)
Q Consensus 88 ~IhV~D 93 (165)
+|-|.-
T Consensus 79 RVEIyr 84 (97)
T 2hj1_A 79 RIEIYR 84 (97)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 998765
No 150
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=54.17 E-value=34 Score=20.80 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=34.0
Q ss_pred EEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++.+ ...||.+|...| |+++....+. . +|..+... .-.+..+++|++|.++-
T Consensus 8 ~~~~-~~~tv~~ll~~l----~~~~~~v~va-v--N~~~v~~~-----~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 8 PRPL-EGKTLKEVLEEM----GVELKGVAVL-L--NEEAFLGL-----EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EECC-TTCCHHHHHHHH----TBCGGGEEEE-E--TTEEEEGG-----GCCCCCCCTTCEEEEEE
T ss_pred EEEc-CCCcHHHHHHHc----CCCCCcEEEE-E--CCEECCcc-----ccCCcCCCCCCEEEEEe
Confidence 4556 778999998886 6776655443 3 46543311 12345789999998875
No 151
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=45.99 E-value=40 Score=30.64 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=42.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHH--HCCCCCce--------EEEEEcCCCCeeec--cCCCCCccCCCCCCCCcEEEEEeC
Q 031156 27 SADVRFPLQMSVESVKDKLWRK--CGTSVNSM--------SLELYDDTNTKVAA--LTDNSRPLGFYSPLQGYRLHVIDL 94 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~--tGip~~~q--------~L~l~~~~g~~i~~--l~dD~~~L~~ygv~dg~~IhV~D~ 94 (165)
+....++...|+.+|-+.|... .++..... ++ ||......+.. -.+-.++|.+.|+.+|+.|+|.|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 791 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRT-LYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADV 791 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEE-EECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEECT
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcE-EEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEEcC
Confidence 4567788889998888877774 33443222 22 34321111000 112367899999999999999995
Q ss_pred C
Q 031156 95 D 95 (165)
Q Consensus 95 ~ 95 (165)
.
T Consensus 792 ~ 792 (805)
T 2nvu_B 792 T 792 (805)
T ss_dssp T
T ss_pred C
Confidence 3
No 152
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=42.35 E-value=57 Score=21.99 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=39.1
Q ss_pred EEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCC
Q 031156 30 VRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (165)
Q Consensus 30 ~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg 86 (165)
-.++-.-+++.||.-|+++.|++-..-.+.|. +.. .+++++|-+-+|+-.
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQ---d~~----L~~~k~LvdQcVqge 56 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQCSLDAHEICLQ---DIQ----LDPDRSLFDQGVKTD 56 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHCSCCSSCEEEET---TEE----CCTTSBTTTSSCCCC
T ss_pred hhccccCcHHHHHHHHHHHhcCCcccCeEEee---ccc----cCCCccHHHhhcccc
Confidence 34566788999999999999999999888774 222 477888888888743
No 153
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=42.08 E-value=63 Score=20.44 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=35.7
Q ss_pred EEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.+.+ ...||.+|-.. .|+++..--+.+ +|..+.. ....++.+++|++|-|+-
T Consensus 9 ~~e~-~~~Tl~~LL~~----l~~~~~~vAV~v---Ng~iVpr-----~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 9 QREV-QSASVAALMTE----LDCTGGHFAVAL---NYDVVPR-----GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EECC-CCSBHHHHHHH----TTCCSSSCEEEE---SSSEECH-----HHHTTCBCCTTCEEEEEC
T ss_pred EEEc-CCCcHHHHHHH----cCCCCCcEEEEE---CCEECCh-----HHcCcccCCCCCEEEEEc
Confidence 4556 77999998776 588887766544 4654321 223456789999998886
No 154
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=40.29 E-value=65 Score=20.00 Aligned_cols=53 Identities=8% Similarity=0.027 Sum_probs=31.9
Q ss_pred EEEecCCCCHHHHHHHHHHHHCCCC--CceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 29 DVRFPLQMSVESVKDKLWRKCGTSV--NSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGip~--~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
++.+ ...||.+|.+.|...-|+.. ..-.+ +. +|..+. -.+..+++|++|.+.-
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~v-av--N~~~v~--------~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAI-AL--NDHLID--------NLNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEE-EE--SSSEEC--------CTTCCCCTTCEEEEEC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEE-EE--CCEEcC--------CCCcCCCCCCEEEEEC
Confidence 3455 67899999999986433321 12222 22 344321 1356799999998874
No 155
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=36.67 E-value=47 Score=22.28 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=30.1
Q ss_pred eEEEEec-CCCCHHHHHHHHHHHHCCCCCceEEEEEcC
Q 031156 27 SADVRFP-LQMSVESVKDKLWRKCGTSVNSMSLELYDD 63 (165)
Q Consensus 27 ~~e~r~~-~~~TV~~LK~KLe~~tGip~~~q~L~l~~~ 63 (165)
...+.|+ ..++|.+||..|-...+.-...-.|.+++.
T Consensus 19 ~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na 56 (86)
T 2c7h_A 19 YDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNA 56 (86)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEES
T ss_pred cceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCC
Confidence 4556676 689999999999999888777778888864
No 156
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=35.95 E-value=1.1e+02 Score=21.27 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=45.7
Q ss_pred CCccEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHH---------HCCCCCceEEEEEcCCCCeeeccCCCCCccCC
Q 031156 10 GDESVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRK---------CGTSVNSMSLELYDDTNTKVAALTDNSRPLGF 80 (165)
Q Consensus 10 ~~~~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~---------tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ 80 (165)
.+..|.|.+=-. +|.....+++.+.|+.++|+.|-.. .+=+.+. .+.-.+..| .+..+.|+++.|.+
T Consensus 16 ~~~~v~v~~LlP--nGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y-~F~~in~~~-e~Eel~DEsrrL~d 91 (108)
T 2v1y_A 16 MPPRILVECLLP--NGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSY-IFVSVTQEA-EREEFFDETRRLCD 91 (108)
T ss_dssp CCSEEEEEEECT--TSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGC-EEEEEBTTS-CEEEECCTTSBGGG
T ss_pred CCCcEEEEEEcC--cEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccce-EEEEecCCc-eEEEeEcCceEEEe
Confidence 445677766643 3568899999999999999987765 3333333 332222223 33446677788877
Q ss_pred CCCCCC
Q 031156 81 YSPLQG 86 (165)
Q Consensus 81 ygv~dg 86 (165)
..+--+
T Consensus 92 v~pf~p 97 (108)
T 2v1y_A 92 LRLFQP 97 (108)
T ss_dssp SCBSSS
T ss_pred ccccce
Confidence 665433
No 157
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=34.03 E-value=1.2e+02 Score=21.01 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=51.3
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
.|...|-.++-+ ...++++...|+.+++.-+..+.|...+.+.|.-...+|..+....+|..... .+.-..+|+|.
T Consensus 9 ~i~~~Vy~~Dhs--y~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~t--sL~~NgRLfvc 84 (104)
T 1wgy_A 9 EIFCHVYITEHS--YVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISK--SLEASGRIYVY 84 (104)
T ss_dssp CCCEEEECSSSC--EEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCC--SSCSSCEEEEE
T ss_pred ceEEEEEeccCc--eEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEe--eccccceEEEe
Confidence 444555544443 56789999999999999999999988778888655545643321223322222 34445589887
Q ss_pred eCC
Q 031156 93 DLD 95 (165)
Q Consensus 93 D~~ 95 (165)
..+
T Consensus 85 ~kd 87 (104)
T 1wgy_A 85 RKD 87 (104)
T ss_dssp ECC
T ss_pred ehH
Confidence 754
No 158
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=33.59 E-value=55 Score=22.45 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=26.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHCCCCCce
Q 031156 27 SADVRFPLQMSVESVKDKLWRKCGTSVNSM 56 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~tGip~~~q 56 (165)
+..+.+++.+|..++++.|....++....-
T Consensus 21 sksi~V~~~~Ta~dv~~~L~~K~~~~~~~~ 50 (100)
T 1wgr_A 21 CRSVEVAAGATARHVCEMLVQRAHALSDET 50 (100)
T ss_dssp EEEEEECTTCCHHHHHHHHHCSSSCCCCCC
T ss_pred EEEEEECCCCcHHHHHHHHHHHcCCCCCCC
Confidence 678899999999999999999999885544
No 159
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=32.40 E-value=22 Score=19.87 Aligned_cols=20 Identities=5% Similarity=0.262 Sum_probs=16.4
Q ss_pred eeecCHHHhhcccchHHHHHHHHh
Q 031156 113 KYTISEEEYSKRDGTFRKFKEKVL 136 (165)
Q Consensus 113 ky~lsee~Y~kr~dtv~~~kk~~k 136 (165)
-|.||-++|.+.+ .||+.+.
T Consensus 9 vFgmsr~eF~~LP----~WKq~~l 28 (35)
T 1wy3_A 9 VFGMTRSAFANLP----LWLQQHL 28 (35)
T ss_dssp HHSSCHHHHHHSC----HHHHHHH
T ss_pred HHCCCHHHHHHCc----HHHHHHH
Confidence 5899999998877 6988664
No 160
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=32.20 E-value=23 Score=17.63 Aligned_cols=11 Identities=9% Similarity=0.362 Sum_probs=9.0
Q ss_pred chHHHHHHHHh
Q 031156 126 GTFRKFKEKVL 136 (165)
Q Consensus 126 dtv~~~kk~~k 136 (165)
|||+.|....+
T Consensus 8 DSV~rWmeDLr 18 (22)
T 3ro3_B 8 DSVQRWMEDLK 18 (26)
T ss_pred HHHHHHHHHHH
Confidence 89999987654
No 161
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=32.04 E-value=1.1e+02 Score=20.07 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=18.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHH
Q 031156 27 SADVRFPLQMSVESVKDKLWRKC 49 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~t 49 (165)
..++.++...||.+|.+.|....
T Consensus 28 ~~~~e~~~~~Tv~~Ll~~L~~~~ 50 (98)
T 1vjk_A 28 EEEIELPEGARVRDLIEEIKKRH 50 (98)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhHC
Confidence 35677788899999999987653
No 162
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=31.11 E-value=1e+02 Score=19.56 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=18.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHH
Q 031156 27 SADVRFPLQMSVESVKDKLWRKC 49 (165)
Q Consensus 27 ~~e~r~~~~~TV~~LK~KLe~~t 49 (165)
..++.++...||.+|.+.|....
T Consensus 19 ~~~~~~~~~~Tv~~ll~~L~~~~ 41 (89)
T 3po0_A 19 TVRVDVDGDATVGDALDALVGAH 41 (89)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHC
T ss_pred eEEEECCCCCcHHHHHHHHHHHC
Confidence 45677778899999999997654
No 163
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=29.54 E-value=35 Score=22.05 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=34.8
Q ss_pred EEEec--CCCCHHHHHHHHHHHHCCC-CCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 29 DVRFP--LQMSVESVKDKLWRKCGTS-VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 29 e~r~~--~~~TV~~LK~KLe~~tGip-~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.+.++ ...||.+|-.. .|++ +..--+.+ +|..+. .....++.+++|++|-|+-
T Consensus 9 ~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVav---Ng~iVp-----r~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSA----LKVAQAEYVTVEL---NGEVLE-----REAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EEECSSCSCEEHHHHHHH----HTCSCTTTCCEEE---TTEECC-----TTHHHHCEECSSBCEEECC
T ss_pred EEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEE---CCEECC-----hHHcCcccCCCCCEEEEEe
Confidence 45677 78999999776 4788 76665543 455432 1223345688999888765
No 164
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=28.14 E-value=28 Score=19.62 Aligned_cols=21 Identities=10% Similarity=0.300 Sum_probs=16.8
Q ss_pred eeeecCHHHhhcccchHHHHHHHHh
Q 031156 112 EKYTISEEEYSKRDGTFRKFKEKVL 136 (165)
Q Consensus 112 eky~lsee~Y~kr~dtv~~~kk~~k 136 (165)
+-|.||-++|.+.+ .||+.+.
T Consensus 10 ~vFgmsr~eF~~LP----~WKq~~l 30 (37)
T 1und_A 10 SVFGITRGQFAALP----GWKQLQM 30 (37)
T ss_dssp HHHSSCHHHHHHSC----HHHHHHH
T ss_pred HHHCcCHHHHHHCh----HHHHHHH
Confidence 36899999998877 6988664
No 165
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=26.21 E-value=20 Score=22.89 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=30.3
Q ss_pred EEEecCCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEE
Q 031156 29 DVRFPLQMSVESVKDKLWRKCGTSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVI 92 (165)
Q Consensus 29 e~r~~~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~ 92 (165)
++.++...||.+|.+.| |+++....+.+ +|..+. . +..+++|++|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~Vav---Ng~~v~---~------~~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKV---NGKVVL---E------DDEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEE---TTEEEC---S------SSCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEE---CCEECC---C------CCCcCCCCEEEEE
Confidence 45677889999998875 56665544433 455431 1 2568888877554
No 166
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=25.68 E-value=49 Score=22.96 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=36.5
Q ss_pred eEEEEec---CCCCHHHHHHHHHHHHCCCCCceEEEEEcCCCC---eeeccCCCC--Ccc--CCCCCCCCcEEEEEeC
Q 031156 27 SADVRFP---LQMSVESVKDKLWRKCGTSVNSMSLELYDDTNT---KVAALTDNS--RPL--GFYSPLQGYRLHVIDL 94 (165)
Q Consensus 27 ~~e~r~~---~~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g~---~i~~l~dD~--~~L--~~ygv~dg~~IhV~D~ 94 (165)
..++.++ ...||.+|-..|.... |.-.-+| ++.+|. .+..+-++. +.| .+|.+++|++|.++-+
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~l--f~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip~ 104 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNL--LKERPEL--FIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIST 104 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHH--HCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEEC
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhh--CccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeCC
Confidence 3457777 3379999999888765 2222233 222332 111122222 222 4688999999888763
No 167
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=25.55 E-value=1.2e+02 Score=18.65 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=29.0
Q ss_pred cCCCCHHHHHHHHHHHHC-----CCCCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 33 PLQMSVESVKDKLWRKCG-----TSVNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 33 ~~~~TV~~LK~KLe~~tG-----ip~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
+...||.+|...|..... ++...-.+ +. +|..+. .+..+++|++|.++-
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v-~v--N~~~v~---------~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLA-AV--NQTLVS---------FDHPLTDGDEVAFFP 76 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEE-EE--TTEECC---------TTCBCCTTCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEE-EE--CCEECC---------CCCCCCCCCEEEEeC
Confidence 567899999998864311 12222222 33 454321 245789999998874
No 168
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.54 E-value=3.4e+02 Score=23.80 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=47.8
Q ss_pred cEEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCC-ceEEEEEcCCCCeeeccCCCCCccCCCCCCCC
Q 031156 13 SVLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVN-SMSLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (165)
Q Consensus 13 ~V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~-~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg 86 (165)
.|.+.|...+ + ..++.+++..|+.+|-..|-...|+.-. .--|.+.+.+|.. .+| +.+..+...++..+
T Consensus 4 ~i~v~V~llD--g-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~-~WL-d~~k~i~~q~~~~~ 73 (575)
T 2i1j_A 4 SMNVRVTTMD--A-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDL-TWI-KLYKKVMQQDVKKE 73 (575)
T ss_dssp EEEEEEECSS--C-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCE-EEC-CTTSBGGGSCBCCC
T ss_pred eEEEEEEeCC--C-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcch-hHh-hccccHHHhcccCC
Confidence 4667777544 3 5679999999999999999999999754 3467666655542 234 44566666655444
No 169
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=23.89 E-value=1.9e+02 Score=21.72 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHCCCCCceEEEEEcCCC
Q 031156 35 QMSVESVKDKLWRKCGTSVNSMSLELYDDTN 65 (165)
Q Consensus 35 ~~TV~~LK~KLe~~tGip~~~q~L~l~~~~g 65 (165)
.-.+..|+++++..+|.+++.--+.+|..+.
T Consensus 81 p~~L~~l~~~~~~~~g~~~n~~LvN~Y~~G~ 111 (204)
T 3s57_A 81 IPVLERIRDHVSGVTGQTFNFVLINRYKDGS 111 (204)
T ss_dssp CHHHHHHHHHHHHHHCCCCSEEEEEEESSTT
T ss_pred CHHHHHHHHHHHHHhCCCCceeEEEEECCCC
Confidence 3478899999999999999998888886543
No 170
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=23.08 E-value=91 Score=20.70 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHCCCCCceEEEEEc
Q 031156 38 VESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 38 V~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
+..|.+.|+..+|+||+...+.+.+
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 77 TSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEE
Confidence 3567778999999999999887763
No 171
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=22.95 E-value=1.9e+02 Score=21.98 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=26.4
Q ss_pred CceEEEEecCCCCHHHHHHHHHHHHCCCCCc
Q 031156 25 SFSADVRFPLQMSVESVKDKLWRKCGTSVNS 55 (165)
Q Consensus 25 ~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~ 55 (165)
+....+.+++.+|..+|.+.|....+++...
T Consensus 44 ~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 44 SSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 3467789999999999999999999987543
No 172
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=22.79 E-value=91 Score=18.13 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCCCceEEEEEc
Q 031156 38 VESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 38 V~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
+..|-+.|...+|+|++...+.+.+
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEEEE
Confidence 4567777888999999998887763
No 173
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=22.74 E-value=86 Score=20.77 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHCCCCCceEEEEEc
Q 031156 39 ESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 39 ~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
..|.+.|+..+|+||+...+.+.+
T Consensus 77 ~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 77 AKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCcCeEEEEEEE
Confidence 345567888999999999887764
No 174
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=22.62 E-value=66 Score=18.35 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=15.0
Q ss_pred CCCHH---HHHHHHHHHHCCCCC
Q 031156 35 QMSVE---SVKDKLWRKCGTSVN 54 (165)
Q Consensus 35 ~~TV~---~LK~KLe~~tGip~~ 54 (165)
++||. +|-..|+..+|+++.
T Consensus 12 ~lTvlE~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTAA 34 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCCSC
T ss_pred hCcHHHHHHHHHHHHHHHCCCcc
Confidence 45654 566789999999975
No 175
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=22.15 E-value=90 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHCCCCCceEEEEEc
Q 031156 39 ESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 39 ~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
..|.+.|+..+|+||+...+.+.+
T Consensus 78 ~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 78 KLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEEEE
Confidence 345567888999999999887764
No 176
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=22.04 E-value=2e+02 Score=19.80 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=54.4
Q ss_pred cEEEEEEecCCC-CceEEEEecCCCCHHHHHHHHHHHHCCC--CCceEEEEEcCCCCeeeccCCCCCccCCCCCCCCcEE
Q 031156 13 SVLLRVTHSNLK-SFSADVRFPLQMSVESVKDKLWRKCGTS--VNSMSLELYDDTNTKVAALTDNSRPLGFYSPLQGYRL 89 (165)
Q Consensus 13 ~V~v~It~s~l~-~~~~e~r~~~~~TV~~LK~KLe~~tGip--~~~q~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~I 89 (165)
.++|+|+.-++. .....+|+.-..-|+-|=-||-...+++ .+.--|.- +.-+. .|..-..+|.-|||+..+.+
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW--~~k~~--WLlkt~~tLDkygiqADa~L 94 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWW--EQKRC--WLLKTHWTLDKCGVQADANL 94 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEE--TTTTE--EECCTTSBHHHHTCCTTSCE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhh--hhhch--hhhhhhhhhhhhceeeeeee
Confidence 567888864442 3467888988899999998888666655 34444532 22222 36677889999999999988
Q ss_pred EEEe
Q 031156 90 HVID 93 (165)
Q Consensus 90 hV~D 93 (165)
|..-
T Consensus 95 ~ftp 98 (102)
T 2kmc_A 95 LFTP 98 (102)
T ss_dssp EEEE
T ss_pred eccC
Confidence 8764
No 177
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=21.59 E-value=99 Score=21.10 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHCCCCCceEEEEEc
Q 031156 38 VESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 38 V~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
+..|.+.|+..+|+||+...+.+.+
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 77 ADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEE
Confidence 4577788999999999999988764
No 178
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=21.58 E-value=1.6e+02 Score=23.58 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=39.8
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHCCCCCceE--EEEEcCCCCeeeccCCCCCc----cCCCCCCCCcEEEEEe
Q 031156 26 FSADVRFPLQMSVESVKDKLWRKCGTSVNSMS--LELYDDTNTKVAALTDNSRP----LGFYSPLQGYRLHVID 93 (165)
Q Consensus 26 ~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q~--L~l~~~~g~~i~~l~dD~~~----L~~ygv~dg~~IhV~D 93 (165)
.+..+.+++++|..+|.+.|....+++...-. +..+...| +.....|... +..+......++.+..
T Consensus 42 ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~--lER~ledhE~V~dvl~~W~~ds~n~l~f~~ 113 (281)
T 4gmv_A 42 SSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQ--MERIFEDHENLVENLLNWTRDSQNKLIFME 113 (281)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGT--EEEECCTTSBHHHHHTTSCTTCCCEEEEEC
T ss_pred CEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCcc--ceeccccchhHHHHHHhcccCCCceEEEEe
Confidence 37789999999999999999998887644332 22232211 1111223222 3456666666776654
No 179
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=21.55 E-value=94 Score=20.80 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHCCCCCceEEEEEc
Q 031156 39 ESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 39 ~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
..|.+-|+..+|+||+..-+.|.+
T Consensus 78 ~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 78 AALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCcccEEEEEEe
Confidence 456677888999999999988775
No 180
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=20.62 E-value=1e+02 Score=20.64 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHCCCCCceEEEEEcCCC
Q 031156 39 ESVKDKLWRKCGTSVNSMSLELYDDTN 65 (165)
Q Consensus 39 ~~LK~KLe~~tGip~~~q~L~l~~~~g 65 (165)
..|.+-|+...|||++..-+.|.+-.+
T Consensus 77 ~~i~~~l~~~Lgi~~~riyI~f~d~~~ 103 (114)
T 3djh_A 77 KLLCGLLAERLRISPDRVYINYYDMNA 103 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEECCG
T ss_pred HHHHHHHHHHhCcCcceEEEEEEECCH
Confidence 467778999999999999998876433
No 181
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=20.45 E-value=1.2e+02 Score=17.39 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHCCCCCceEEEEEc
Q 031156 39 ESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 39 ~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
..|-+.|...+|+|+....+.+..
T Consensus 21 ~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 21 EKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHhCcCcCeEEEEEEE
Confidence 455567788899999998877753
No 182
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=20.41 E-value=1.2e+02 Score=18.50 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=32.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHHCCCCCce--EEEEEcCCCCeeeccCCCCCccCCCCCCCCcEEEEEe
Q 031156 28 ADVRFPLQMSVESVKDKLWRKCGTSVNSM--SLELYDDTNTKVAALTDNSRPLGFYSPLQGYRLHVID 93 (165)
Q Consensus 28 ~e~r~~~~~TV~~LK~KLe~~tGip~~~q--~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg~~IhV~D 93 (165)
.++.++...||.+|.+.|.....- .... .+ .. +|+.+. . +..+++|++|.+.-
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v-~v--Ng~~v~---~------~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQ-INNKKFQV-AV--NEEFVQ---K------SDFIQPNDTVALIP 72 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEE-EE--TTEEEC---T------TSEECTTCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHCcc-hhcceEEE-EE--CCEECC---C------CCCcCCCCEEEEEC
Confidence 445667788999999998765310 0111 22 23 455431 1 25789999988864
No 183
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=20.31 E-value=35 Score=23.02 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=20.6
Q ss_pred cccCCcceeeecCHHHhhcccchHHHHHHHHh
Q 031156 105 LEDTSLVEKYTISEEEYSKRDGTFRKFKEKVL 136 (165)
Q Consensus 105 l~d~s~veky~lsee~Y~kr~dtv~~~kk~~k 136 (165)
|.|.+=.+-|.||-++|.+.+ .|||.+.
T Consensus 48 LSdedF~~vFgMsr~eF~~LP----~WKq~~l 75 (88)
T 1ujs_A 48 LSQEEFYQVFGMTISEFDRLA----LWKRNEL 75 (88)
T ss_dssp SCTTHHHHHHSSCHHHHTTSC----HHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHCh----HHHHHHH
Confidence 344444447999999999877 7998765
No 184
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=20.29 E-value=1e+02 Score=20.47 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHCCCCCceEEEEEc
Q 031156 38 VESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 38 V~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
+..|.+.|+..+|+||+...+.+.+
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 77 SELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEE
Confidence 4567788999999999999887764
No 185
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=20.14 E-value=1e+02 Score=20.70 Aligned_cols=24 Identities=4% Similarity=0.108 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHCCCCCceEEEEEc
Q 031156 39 ESVKDKLWRKCGTSVNSMSLELYD 62 (165)
Q Consensus 39 ~~LK~KLe~~tGip~~~q~L~l~~ 62 (165)
..|.+.|+..+|+||+...+.+.+
T Consensus 78 ~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 78 QKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHhCcCcccEEEEEEE
Confidence 345567888999999999887764
No 186
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=20.12 E-value=3e+02 Score=21.18 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=45.3
Q ss_pred EEEEEEecCCCCceEEEEecCCCCHHHHHHHHHHHHCCCCCce-EEEEEcCCCCeeeccCCCCCccCCCCCCCC
Q 031156 14 VLLRVTHSNLKSFSADVRFPLQMSVESVKDKLWRKCGTSVNSM-SLELYDDTNTKVAALTDNSRPLGFYSPLQG 86 (165)
Q Consensus 14 V~v~It~s~l~~~~~e~r~~~~~TV~~LK~KLe~~tGip~~~q-~L~l~~~~g~~i~~l~dD~~~L~~ygv~dg 86 (165)
|.+.|.-.+ + ..++.+++..|+.+|-+.|-...|+..... -|.+.+.+|.. .+| +.++.+...++..+
T Consensus 2 i~~~V~l~d--~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~-~wL-d~~~~l~~q~~~~~ 70 (294)
T 1ef1_A 2 ISVRVTTMD--A-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFS-TWL-KLNKKVTAQDVRKE 70 (294)
T ss_dssp EEEEEEETT--E-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCE-EEC-CSSSBGGGSCBCCC
T ss_pred EEEEEEECC--c-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCce-eec-ccccCHHhhccCCC
Confidence 566676543 3 567999999999999999999999986542 45555555532 123 44556665544433
Done!