Query 031157
Match_columns 165
No_of_seqs 134 out of 671
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5066 SCS2 VAMP-associated p 99.9 2.6E-27 5.5E-32 186.6 11.9 133 7-141 3-136 (242)
2 KOG0439 VAMP-associated protei 99.9 4.2E-26 9.1E-31 182.4 16.1 135 1-137 3-141 (218)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 3.1E-24 6.7E-29 153.5 11.6 104 7-111 2-107 (109)
4 PF14874 PapD-like: Flagellar- 98.8 1.3E-07 2.9E-12 66.6 10.9 70 5-74 2-74 (102)
5 PF00345 PapD_N: Pili and flag 97.8 0.0011 2.5E-08 48.0 12.8 110 7-129 2-120 (122)
6 PRK09918 putative fimbrial cha 96.5 0.24 5.2E-06 40.1 14.9 109 6-130 25-138 (230)
7 PF14646 MYCBPAP: MYCBP-associ 95.9 0.061 1.3E-06 47.3 9.3 67 9-75 233-313 (426)
8 PRK11385 putativi pili assembl 95.9 0.59 1.3E-05 38.2 14.3 111 6-130 27-149 (236)
9 PRK15246 fimbrial assembly cha 95.8 0.87 1.9E-05 37.1 15.3 115 6-130 11-135 (233)
10 PRK09926 putative chaperone pr 95.6 0.29 6.4E-06 40.1 11.6 86 6-96 26-121 (246)
11 PRK15295 fimbrial assembly cha 95.6 0.46 1E-05 38.5 12.5 112 6-130 20-138 (226)
12 PRK15211 fimbrial chaperone pr 95.6 0.46 9.9E-06 38.7 12.4 84 7-96 24-113 (229)
13 PRK15249 fimbrial chaperone pr 95.5 0.19 4.1E-06 41.4 10.3 86 6-96 29-125 (253)
14 PRK15299 fimbrial chaperone pr 95.5 0.95 2.1E-05 36.6 14.0 112 6-130 23-142 (227)
15 PF07610 DUF1573: Protein of u 95.5 0.1 2.2E-06 31.5 6.4 43 28-71 2-45 (45)
16 COG3121 FimC P pilus assembly 95.0 1.6 3.6E-05 35.5 14.6 114 6-131 28-148 (235)
17 PRK15192 fimbrial chaperone Bc 94.7 1.9 4.1E-05 35.2 13.6 107 7-130 24-144 (234)
18 PRK15290 lfpB fimbrial chapero 94.7 2 4.4E-05 35.2 14.4 111 7-129 39-157 (243)
19 PRK15254 fimbrial chaperone pr 93.8 3.2 6.9E-05 34.0 14.2 111 6-130 17-135 (239)
20 PF11614 FixG_C: IG-like fold 93.4 0.41 9E-06 34.3 6.7 50 25-74 34-85 (118)
21 PRK15218 fimbrial chaperone pr 93.3 3.8 8.2E-05 33.3 14.1 111 7-130 20-141 (226)
22 PRK15188 fimbrial chaperone pr 93.1 4 8.8E-05 33.2 14.6 114 6-131 28-147 (228)
23 PRK15208 long polar fimbrial c 92.8 2.7 5.9E-05 34.0 11.4 85 6-96 22-112 (228)
24 PRK15195 fimbrial chaperone pr 91.8 2.7 5.8E-05 34.1 10.1 113 6-130 26-145 (229)
25 PRK15224 pili assembly chapero 90.8 6.3 0.00014 32.3 11.4 77 12-96 35-118 (237)
26 PRK15274 putative periplasmic 90.0 8.9 0.00019 31.8 11.7 83 9-96 30-120 (257)
27 PRK15253 putative fimbrial ass 89.5 10 0.00022 31.1 11.6 83 8-96 36-128 (242)
28 PRK15233 putative fimbrial cha 89.0 12 0.00025 30.9 11.8 77 12-96 47-130 (246)
29 PRK15285 putative fimbrial cha 88.1 14 0.00029 30.5 13.9 83 9-96 29-119 (250)
30 PF06280 DUF1034: Fn3-like dom 87.5 1.7 3.7E-05 30.8 5.3 53 22-74 8-81 (112)
31 PRK15308 putative fimbrial pro 85.5 17 0.00037 29.8 10.6 84 6-97 17-118 (234)
32 PF04744 Monooxygenase_B: Mono 82.4 6.7 0.00015 34.2 7.4 65 7-73 249-335 (381)
33 TIGR03079 CH4_NH3mon_ox_B meth 81.0 4.2 9.1E-05 35.5 5.6 55 20-74 280-355 (399)
34 PF00927 Transglut_C: Transglu 80.2 7 0.00015 27.3 5.8 55 20-74 13-77 (107)
35 PF05506 DUF756: Domain of unk 79.8 8.6 0.00019 26.1 6.0 46 24-72 20-66 (89)
36 PF10633 NPCBM_assoc: NPCBM-as 77.4 3.5 7.5E-05 27.3 3.3 54 22-75 5-62 (78)
37 PF12690 BsuPI: Intracellular 74.3 19 0.00041 24.4 6.3 20 25-44 3-22 (82)
38 PF11611 DUF4352: Domain of un 72.3 21 0.00045 25.0 6.5 52 22-73 36-101 (123)
39 TIGR02745 ccoG_rdxA_fixG cytoc 69.9 50 0.0011 29.5 9.6 69 23-93 347-417 (434)
40 PF05753 TRAP_beta: Translocon 69.6 28 0.00061 27.3 7.2 54 20-74 36-98 (181)
41 PF03173 CHB_HEX: Putative car 69.3 6.1 0.00013 30.5 3.3 34 40-73 69-104 (164)
42 smart00809 Alpha_adaptinC2 Ada 68.4 34 0.00073 23.4 6.8 52 22-73 18-73 (104)
43 PF13473 Cupredoxin_1: Cupredo 65.7 38 0.00083 23.4 6.6 52 8-71 31-82 (104)
44 PF02753 PapD_C: Pili assembly 60.5 8.1 0.00018 24.7 2.2 43 28-70 1-44 (68)
45 PF00553 CBM_2: Cellulose bind 60.3 27 0.00059 24.3 5.0 52 22-73 13-84 (101)
46 PF07705 CARDB: CARDB; InterP 56.2 56 0.0012 21.5 6.6 54 21-74 18-72 (101)
47 PF06030 DUF916: Bacterial pro 48.2 47 0.001 24.2 4.8 27 18-44 23-49 (121)
48 PF02883 Alpha_adaptinC2: Adap 46.0 70 0.0015 22.3 5.3 75 21-95 23-102 (115)
49 smart00637 CBD_II CBD_II domai 43.3 1E+02 0.0022 20.7 6.6 48 24-71 8-75 (92)
50 PF14796 AP3B1_C: Clathrin-ada 40.5 1.3E+02 0.0029 22.8 6.3 50 22-71 85-138 (145)
51 PRK15249 fimbrial chaperone pr 38.2 90 0.0019 25.6 5.5 42 27-69 177-219 (253)
52 COG3121 FimC P pilus assembly 36.6 1E+02 0.0023 24.9 5.6 43 26-70 165-209 (235)
53 PF10342 GPI-anchored: Ser-Thr 36.5 1.2E+02 0.0027 19.8 7.3 60 11-71 14-78 (93)
54 PF08402 TOBE_2: TOBE domain; 36.3 1E+02 0.0023 18.9 7.1 65 7-71 1-69 (75)
55 PF13205 Big_5: Bacterial Ig-l 34.7 1.4E+02 0.0031 20.0 7.3 56 13-71 26-84 (107)
56 PF06483 ChiC: Chitinase C; I 33.3 53 0.0011 25.9 3.2 19 54-72 123-141 (180)
57 PRK15295 fimbrial assembly cha 31.5 1.4E+02 0.0031 24.0 5.6 39 27-69 158-197 (226)
58 TIGR02656 cyanin_plasto plasto 31.1 1.7E+02 0.0038 19.9 5.9 59 6-70 11-75 (99)
59 PF09640 DUF2027: Domain of un 29.5 1E+02 0.0022 24.0 4.1 68 23-97 17-84 (162)
60 PF07233 DUF1425: Protein of u 28.5 2E+02 0.0043 19.7 7.4 35 21-55 23-59 (94)
61 cd04094 selB_III This family r 28.3 1.9E+02 0.0042 19.5 6.0 51 36-90 34-84 (97)
62 PRK09926 putative chaperone pr 27.3 2.1E+02 0.0046 23.2 6.0 42 26-69 173-216 (246)
63 cd06409 PB1_MUG70 The MUG70 pr 25.8 47 0.001 23.0 1.6 21 39-59 2-24 (86)
64 PF11906 DUF3426: Protein of u 25.3 1.7E+02 0.0038 21.3 4.8 27 47-73 108-136 (149)
65 COG1470 Predicted membrane pro 25.0 5.4E+02 0.012 23.6 10.7 72 19-94 394-469 (513)
66 PRK15192 fimbrial chaperone Bc 24.3 2E+02 0.0043 23.4 5.2 39 27-69 163-202 (234)
67 KOG1769 Ubiquitin-like protein 24.2 1.1E+02 0.0023 21.8 3.2 25 24-48 19-43 (99)
68 smart00605 CW CW domain. 24.0 1.1E+02 0.0024 20.7 3.2 21 27-47 58-79 (94)
69 TIGR00192 urease_beta urease, 23.9 1.3E+02 0.0029 21.5 3.6 28 9-39 8-35 (101)
70 PRK15246 fimbrial assembly cha 23.4 2.2E+02 0.0047 23.1 5.3 39 27-69 154-192 (233)
71 PF00699 Urease_beta: Urease b 23.1 1.2E+02 0.0026 21.7 3.2 28 9-39 7-34 (100)
72 PF08277 PAN_3: PAN-like domai 22.9 1.1E+02 0.0024 19.2 2.9 19 24-42 53-71 (71)
73 KOG3865 Arrestin [Signal trans 21.7 1.5E+02 0.0032 25.8 4.0 70 1-74 190-277 (402)
74 PF04797 Herpes_ORF11: Herpesv 21.6 5.2E+02 0.011 22.4 7.6 59 6-70 264-329 (379)
75 PRK10378 inactive ferrous ion 21.5 2.7E+02 0.0059 24.4 5.8 47 25-75 52-98 (375)
76 cd00407 Urease_beta Urease bet 21.0 2.2E+02 0.0047 20.4 4.2 28 9-39 8-35 (101)
77 PRK13202 ureB urease subunit b 20.1 2.2E+02 0.0049 20.4 4.1 29 9-39 8-36 (104)
No 1
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.95 E-value=2.6e-27 Score=186.58 Aligned_cols=133 Identities=38% Similarity=0.584 Sum_probs=113.7
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecccccCC-CCCCCCC
Q 031157 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP-PDFQCKD 85 (165)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p-~~~~~~d 85 (165)
|+++|. +.|..|+....++.+.|.|++.++|+||||||+|..||||||.|+|+|++++.|.|+|++.+++| +|.+|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 556664 56777899999999999999999999999999999999999999999999999999999998877 6889999
Q ss_pred eEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCCCCCCCCCCCCC
Q 031157 86 KFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPPSPVPEGSEEG 141 (165)
Q Consensus 86 kFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~~~~~~~~~~~~ 141 (165)
|||||+...+......++. ++|....+.-+.+.||+|.|.-..-...+|+.++..
T Consensus 82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse~~is~nvh~~~e~~ 136 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSEEEISKNVHECSEDR 136 (242)
T ss_pred eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeeccccCCCcccccccc
Confidence 9999999999877777885 899987777799999999999333333455554443
No 2
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.2e-26 Score=182.38 Aligned_cols=135 Identities=45% Similarity=0.727 Sum_probs=115.1
Q ss_pred CCCCCcEEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecccccCCC
Q 031157 1 MSTGDLVNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (165)
Q Consensus 1 m~~~~lL~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~ 79 (165)
|+.+.+|.|+|. +|.|..++.....+.|+|+|++..++|||||||+|.+|+|||+.|+|.||+++.|.|.+++....|.
T Consensus 3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~ 82 (218)
T KOG0439|consen 3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPP 82 (218)
T ss_pred ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCch
Confidence 456689999996 7999999988899999999999999999999999999999999999999999999999999777788
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccC--CCeeEEEEeEEEEe-cCCCCCCCCCC
Q 031157 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKED--GKVVEEFKLRVVYI-PANPPSPVPEG 137 (165)
Q Consensus 80 ~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~--~~~i~~~kL~v~~~-~~~~~~~~~~~ 137 (165)
+++++|||+|+++.++.+ +..++ .++|.... +..+.+.+++|.|. +..++.....+
T Consensus 83 d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 141 (218)
T KOG0439|consen 83 DFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKL 141 (218)
T ss_pred hhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCccccccc
Confidence 888999999999999976 33344 37787655 67889999999999 44444433333
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.92 E-value=3.1e-24 Score=153.51 Aligned_cols=104 Identities=42% Similarity=0.669 Sum_probs=82.7
Q ss_pred EEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecccccCCCCCCCCC
Q 031157 7 VNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKD 85 (165)
Q Consensus 7 L~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~~~~~~d 85 (165)
|.|+|. .|.|.+++++.+.+.|+|+|+++++||||||||+|.+|+|+|+.|+|+||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 789999 69999999899999999999999999999999999999999999999999999999999997654433 2399
Q ss_pred eEEEEEEEcCCCCC-cccccccccccc
Q 031157 86 KFLLLSVVAPDGAT-AKDIGPDMFTKE 111 (165)
Q Consensus 86 kFlVq~~~~~~~~~-~~d~~~~~f~~~ 111 (165)
||+|+++.++++.. ..+....+|++.
T Consensus 81 kf~I~~~~~~~~~~~~~~~~~~~~~~~ 107 (109)
T PF00635_consen 81 KFLIQSIVVPDNATDPKKDFKQIWKNG 107 (109)
T ss_dssp EEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred EEEEEEEEcCCCccchhhhHHHHHhcc
Confidence 99999999987653 222234677654
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.78 E-value=1.3e-07 Score=66.64 Aligned_cols=70 Identities=24% Similarity=0.413 Sum_probs=61.6
Q ss_pred CcEEEeCCeeEEec-cCCCceEEEEEEEcCCCCeEEEEEEeCC--CCcEEEeCCceEeCCCCeEEEEEEeccc
Q 031157 5 DLVNIQPSELKFPF-ELKKQSSCSMQLTNKTDKFVAFKVKTTN--PKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (165)
Q Consensus 5 ~lL~i~P~eL~F~~-~~~~~~~~~l~L~N~s~~~vaFKVKTT~--p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~ 74 (165)
..|.++|.+|.|-. ..+......|+|+|.+..++.|+|+.-. ...|.|.|..|+|+||++..+.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 46899999999965 5567788999999999999999998643 4689999999999999999999999954
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=97.80 E-value=0.0011 Score=48.02 Aligned_cols=110 Identities=23% Similarity=0.336 Sum_probs=74.5
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC---C------CcEEEeCCceEeCCCCeEEEEEEecccccC
Q 031157 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN---P------KKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (165)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~---p------~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~ 77 (165)
|.|+|..+.|... .....++|+|.++.++.+.++... . ..|.|.|+.-.|+||+...|.| +... ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 6788999999863 347799999999999999988664 1 2799999999999999999999 4432 23
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 031157 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (165)
Q Consensus 78 p~~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~ 129 (165)
+.+ ....|.|....++...... + .+..-.....+.+++.|.|+.
T Consensus 77 ~~~--~E~~yrl~~~~iP~~~~~~----~--~~~~v~i~~~~~i~v~~rP~~ 120 (122)
T PF00345_consen 77 PID--RESLYRLSFREIPPSEAEN----E--SKNGVQIALRYSIPVFYRPAG 120 (122)
T ss_dssp -SS--S-EEEEEEEEEEESCCTTS----S--SSSEEEEEEEEEEEEEEEETT
T ss_pred CCC--ceEEEEEEEEEEecccccc----c--ccceEEEEEEEEEEEEECchh
Confidence 333 2345555555555432100 1 111113456788888888653
No 6
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=96.48 E-value=0.24 Score=40.15 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=73.5
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC-----CcEEEeCCceEeCCCCeEEEEEEecccccCCCC
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP-----KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p-----~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~~ 80 (165)
-|.+.|..+.|... .....++|+|.++.++......... .-|.|.|+.-.|+||+...|+|.+.. ..|.|
T Consensus 25 ~v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~d 99 (230)
T PRK09918 25 GMVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLN 99 (230)
T ss_pred eEEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCC
Confidence 36778888888864 4567899999999877666654322 35999999999999999999998874 24544
Q ss_pred CCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 031157 81 FQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (165)
Q Consensus 81 ~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~ 130 (165)
. .--|.+...++|+... . +..=......+|++-|.|...
T Consensus 100 r--Es~f~l~v~~IP~~~~----~-----~~~l~ia~r~~iklfyRP~~l 138 (230)
T PRK09918 100 T--EHLLRVSFEGVPPKPG----G-----KNKVVMPIRQDLPVLIQPAAL 138 (230)
T ss_pred e--eEEEEEEEEEcCCCCC----C-----CCEEEEEEEeEEEEEEeCCCC
Confidence 2 2346666666664211 0 001123456678888887654
No 7
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=95.91 E-value=0.061 Score=47.33 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=54.8
Q ss_pred EeCC-eeEEeccCCCceEEEEE-EEcCCCCeEEEEEEeCC------------CCcEEEeCCceEeCCCCeEEEEEEeccc
Q 031157 9 IQPS-ELKFPFELKKQSSCSMQ-LTNKTDKFVAFKVKTTN------------PKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (165)
Q Consensus 9 i~P~-eL~F~~~~~~~~~~~l~-L~N~s~~~vaFKVKTT~------------p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~ 74 (165)
+.+. .|.|...........|. |.|.+...|-|..+--. ...|......|+|.||++..+.|++++.
T Consensus 233 ~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~ 312 (426)
T PF14646_consen 233 VSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSR 312 (426)
T ss_pred cCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCC
Confidence 3444 68998766666666666 99999999999977543 3579999999999999999999999975
Q ss_pred c
Q 031157 75 K 75 (165)
Q Consensus 75 ~ 75 (165)
.
T Consensus 313 ~ 313 (426)
T PF14646_consen 313 K 313 (426)
T ss_pred C
Confidence 3
No 8
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=95.87 E-value=0.59 Score=38.20 Aligned_cols=111 Identities=20% Similarity=0.252 Sum_probs=70.6
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeC------------CCCcEEEeCCceEeCCCCeEEEEEEecc
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT------------NPKKYCVRPNTGIILPRTSCAVTVTMQA 73 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT------------~p~~Y~VkP~~GvI~Pg~s~~I~Itl~~ 73 (165)
-|.+++..+.|... .....|+|.|.++++..-..+.. ...-|.|-|+.-.|+||+...++|....
T Consensus 27 ~v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~ 103 (236)
T PRK11385 27 GVVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTE 103 (236)
T ss_pred eEEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECC
Confidence 36677778888863 45778999999998644333211 1135999999999999999999999875
Q ss_pred cccCCCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 031157 74 QKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (165)
Q Consensus 74 ~~~~p~~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~ 130 (165)
...+|.|. ..-|-+....+|+... + .+ .=......+|++-|.|..-
T Consensus 104 ~~~LP~DR--ESlf~lnv~~IPp~~~--~--~n-----~L~iair~riKLFyRP~~L 149 (236)
T PRK11385 104 SDILPVDR--ETLFELSIASVPSGKV--E--NQ-----SVKVAMRSVFKLFWRPEGL 149 (236)
T ss_pred CCCCCCCc--eEEEEEEEEecCCCcC--C--Cc-----eEEEEEEeeEEEEEccccc
Confidence 32456552 3445555555554211 0 00 0123356777777776543
No 9
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=95.75 E-value=0.87 Score=37.11 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=73.4
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC----------CcEEEeCCceEeCCCCeEEEEEEecccc
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQK 75 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~ 75 (165)
-|.|.+..+.|... .....|+|.|.++.++.-....... .-|.|-|+.-.|+||+...|+|......
T Consensus 11 ~v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 37788888999864 4567899999998865444433211 1599999999999999999999987533
Q ss_pred cCCCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 031157 76 EAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (165)
Q Consensus 76 ~~p~~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~ 130 (165)
.+|.|. .--|-+....+|+... +.. . .+..=......+|++-|.|..-
T Consensus 88 ~LP~DR--ESlf~lnv~~IP~~~~--~~~-~--~~~~l~iair~rIKlFyRP~~L 135 (233)
T PRK15246 88 QLATDR--ESLFWLNIYQIPPVTQ--DIK-N--HPRKLVLPLRLRLKILIRPTGL 135 (233)
T ss_pred CCCCCc--eEEEEEEEEEcCCCCc--ccc-c--ccceEEEEeeeEEEEEECCccc
Confidence 456542 2335566666665211 100 0 0000123456778888887654
No 10
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=95.62 E-value=0.29 Score=40.08 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=62.3
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCC----------cEEEeCCceEeCCCCeEEEEEEecccc
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPK----------KYCVRPNTGIILPRTSCAVTVTMQAQK 75 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~----------~Y~VkP~~GvI~Pg~s~~I~Itl~~~~ 75 (165)
-|.+.|..++|+.. .....|+|.|.++.++.-.......+ -|.|-|+.-.|+||+...|+|......
T Consensus 26 ~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~~ 102 (246)
T PRK09926 26 DIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAST 102 (246)
T ss_pred eEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCCC
Confidence 47788888999864 45778999999998877776654322 399999999999999999999987532
Q ss_pred cCCCCCCCCCeEEEEEEEcCC
Q 031157 76 EAPPDFQCKDKFLLLSVVAPD 96 (165)
Q Consensus 76 ~~p~~~~~~dkFlVq~~~~~~ 96 (165)
..|.|. .--|.+...++|+
T Consensus 103 ~lP~Dr--ESlf~lnv~eIP~ 121 (246)
T PRK09926 103 ALPKDR--ESVFWFNVLEVPP 121 (246)
T ss_pred CCCCCc--eEEEEEEeeecCC
Confidence 355442 2335555555554
No 11
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=95.59 E-value=0.46 Score=38.48 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=70.3
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC-------CCcEEEeCCceEeCCCCeEEEEEEecccccCC
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p 78 (165)
-|.+.+..++|... .....|+|.|.++.++.-...... ..-|.|.|+.-.|+||+...|+|..... .+|
T Consensus 20 ~i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP 95 (226)
T PRK15295 20 SIVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLP 95 (226)
T ss_pred cEEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 36778888898864 346789999999876443332221 2259999999999999999999988742 345
Q ss_pred CCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 031157 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (165)
Q Consensus 79 ~~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~ 130 (165)
.|. .--|.+....+|+.... + ..+ .=......+|++-|.|..-
T Consensus 96 ~Dr--Eslf~lnv~~IP~~~~~-~-~~n-----~l~iair~rIKLFyRP~~L 138 (226)
T PRK15295 96 ADR--ESMYWLNIKGIPSIDDN-A-SAN-----RVEISINTQIKLIYRPPAL 138 (226)
T ss_pred CCc--eEEEEEEEEEcCCCCCc-C-ccc-----eEEEEeeeeeeEEEchhhc
Confidence 442 23355555566552110 0 000 0123446677777776543
No 12
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=95.56 E-value=0.46 Score=38.69 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=58.9
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC------CCcEEEeCCceEeCCCCeEEEEEEecccccCCCC
Q 031157 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPD 80 (165)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~------p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~~ 80 (165)
|.+++..+.|+.. .....|+|.|.++.+..-...... ..-|.|.|+.-.|+||+...|+|..... ..|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6677777888863 457789999999887544433311 1259999999999999999999998753 35555
Q ss_pred CCCCCeEEEEEEEcCC
Q 031157 81 FQCKDKFLLLSVVAPD 96 (165)
Q Consensus 81 ~~~~dkFlVq~~~~~~ 96 (165)
. .--|-+....+|+
T Consensus 100 R--ESlf~lnv~~IP~ 113 (229)
T PRK15211 100 R--ESLFWLNVQEIPP 113 (229)
T ss_pred c--eEEEEEEEEEcCC
Confidence 2 3345555555554
No 13
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=95.55 E-value=0.19 Score=41.41 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=60.0
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC-----------CcEEEeCCceEeCCCCeEEEEEEeccc
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP-----------KKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p-----------~~Y~VkP~~GvI~Pg~s~~I~Itl~~~ 74 (165)
-|.|.|..++|+.. .....|+|.|.++.++.....+... .-|.|.|+.--|+||+...|+|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 47888888999854 3566899999998876665543221 139999999999999999999998752
Q ss_pred ccCCCCCCCCCeEEEEEEEcCC
Q 031157 75 KEAPPDFQCKDKFLLLSVVAPD 96 (165)
Q Consensus 75 ~~~p~~~~~~dkFlVq~~~~~~ 96 (165)
...|.|. .--|.+...++|+
T Consensus 106 ~~lP~DR--ESlf~lnv~eIP~ 125 (253)
T PRK15249 106 KKLPQDR--ESVFWFNVLQVPP 125 (253)
T ss_pred CCCCCCc--eEEEEEEeeecCC
Confidence 2355542 2234444445554
No 14
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=95.49 E-value=0.95 Score=36.60 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=72.6
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC--------CCcEEEeCCceEeCCCCeEEEEEEecccccC
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN--------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~--------p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~ 77 (165)
-|.+.|..+.|... .....|+|.|.++.++.-...... ..-|.|.|+.-.|+||+...|+|..... ..
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NL 98 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CC
Confidence 47788888998865 356789999999877655544322 1249999999999999999999987752 34
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 031157 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (165)
Q Consensus 78 p~~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~ 130 (165)
|.| ...-|.+...++|+... + . . ++ .-......+|++.|.|+.-
T Consensus 99 P~D--rEslf~lnv~eIP~~~~--~-~-~--~n-~l~iavr~riKLfyRP~~l 142 (227)
T PRK15299 99 PED--RESLYWLDIKSIPSSNP--D-N-K--HN-TLMLAVKAEFKLIYRPKAL 142 (227)
T ss_pred CCc--ceEEEEEEeEecCCCCc--c-c-c--cc-eEEEEEeeeeeEEEccccc
Confidence 554 23346666666665211 0 0 0 00 0123456777888876543
No 15
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=95.45 E-value=0.1 Score=31.55 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=35.4
Q ss_pred EEEEcCCCCeEE-EEEEeCCCCcEEEeCCceEeCCCCeEEEEEEe
Q 031157 28 MQLTNKTDKFVA-FKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (165)
Q Consensus 28 l~L~N~s~~~va-FKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~Itl 71 (165)
++++|.++.++. .+|++ +=+...+......|+||++..|.|++
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 689999986654 55655 56888999999999999999999874
No 16
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.96 E-value=1.6 Score=35.46 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=78.7
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCC-------CCcEEEeCCceEeCCCCeEEEEEEecccccCC
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTN-------PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~-------p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p 78 (165)
-+.+.+..+.|+.. .....|+|.|.++.++.-.+..-. ...|.|.|+.-.|+||+...|+|.+.+. ..|
T Consensus 28 ~v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP 103 (235)
T COG3121 28 GVVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLP 103 (235)
T ss_pred eEEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCC
Confidence 36677778888875 356789999988899998876552 4469999999999999999999999986 456
Q ss_pred CCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCCC
Q 031157 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPP 131 (165)
Q Consensus 79 ~~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~~ 131 (165)
.| ...-|-+..-++|+... +.... . .-.....++|++-|.|+.-.
T Consensus 104 ~d--rEslf~lnv~eIPp~~~--~~~~~--n--~lq~a~r~riKlf~RP~~l~ 148 (235)
T COG3121 104 AD--RESLFRLNVDEIPPKSK--DDKGP--N--VLQLALRSRIKLFYRPAGLA 148 (235)
T ss_pred CC--ceeEEEEEeeecCCCCc--ccCCc--c--eEEEEeeeeeeEEECcccCC
Confidence 65 34566666666665321 00100 0 00234567777777765543
No 17
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=94.68 E-value=1.9 Score=35.22 Aligned_cols=107 Identities=17% Similarity=0.282 Sum_probs=69.5
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeC----------C----CCcEEEeCCceEeCCCCeEEEEEEec
Q 031157 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTT----------N----PKKYCVRPNTGIILPRTSCAVTVTMQ 72 (165)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT----------~----p~~Y~VkP~~GvI~Pg~s~~I~Itl~ 72 (165)
|.++...++|+.. .....|+|.|.++.+ |-|++. . ..-|.|-|+.-.|+||+...++|...
T Consensus 24 i~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 5667777888863 456789999999886 556552 1 12499999999999999999999987
Q ss_pred ccccCCCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 031157 73 AQKEAPPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (165)
Q Consensus 73 ~~~~~p~~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~ 130 (165)
.. .+|.|. .--|-+....+|+... + .+ .=......+|++-|.|+.-
T Consensus 99 ~~-~LP~DR--ESlf~lnv~~IPp~~~--~--~n-----~l~iair~riKlFYRP~~L 144 (234)
T PRK15192 99 GA-PLPADR--ESLFTLSIAAIPSGKP--E--AN-----RVQMAFRSALKLLYRPEGL 144 (234)
T ss_pred CC-CCCCcc--eEEEEEEEEecCCCCC--C--Cc-----EEEEEEEeeeeEEEccccc
Confidence 53 356542 3445555555665211 0 00 0123346677777776543
No 18
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=94.67 E-value=2 Score=35.21 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=72.0
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCC-CeEEEEEEeCC---C----CcEEEeCCceEeCCCCeEEEEEEecccccCC
Q 031157 7 VNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTN---P----KKYCVRPNTGIILPRTSCAVTVTMQAQKEAP 78 (165)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~---p----~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p 78 (165)
|.+++..+.|+.. .....|+|+|.++ .+..-...... . .-|.|-|+.-.|+||+...++|...+....|
T Consensus 39 v~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 6777778999863 4566899999986 56666655541 1 1499999999999999999999987533356
Q ss_pred CCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCC
Q 031157 79 PDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPAN 129 (165)
Q Consensus 79 ~~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~ 129 (165)
.|. .--|-+...++|+.....+ ++ .=......+|++-|.|..
T Consensus 116 ~DR--ESlf~lnv~eIPp~~~~~~------~n-~L~iair~rIKlFyRP~~ 157 (243)
T PRK15290 116 DDR--ESVFWLNIKNIPPSASNKA------TN-SLEIAVKTRIKLFWRPAS 157 (243)
T ss_pred CCe--eEEEEEEEEEcCCCCcccc------cc-eEEEEEEEeeeEEEeccc
Confidence 552 3445555555654211000 00 012345677888888655
No 19
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=93.77 E-value=3.2 Score=33.99 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=68.8
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCC-CeEEEEEEeCC----C-CcEEEeCCceEeCCCCeEEEEEEecc--cccC
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTD-KFVAFKVKTTN----P-KKYCVRPNTGIILPRTSCAVTVTMQA--QKEA 77 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~-~~vaFKVKTT~----p-~~Y~VkP~~GvI~Pg~s~~I~Itl~~--~~~~ 77 (165)
-|.+++..+.|... .....|+|.|.++ .++.-...... + .-|.|.|+.-.|+||+...|+|.... ....
T Consensus 17 ~v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~l 93 (239)
T PRK15254 17 AVNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKL 93 (239)
T ss_pred eEEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCC
Confidence 36677778998864 4567899999986 45544443321 1 25999999999999999999998863 2345
Q ss_pred CCCCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCC
Q 031157 78 PPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANP 130 (165)
Q Consensus 78 p~~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~ 130 (165)
|.|. ..-|-+....+|+... + .+ .=......+|++-|.|..-
T Consensus 94 P~DR--ESlf~lnv~~IP~~~~--~--~n-----~L~iair~~iKLFyRP~~L 135 (239)
T PRK15254 94 PQDR--ETLFWFNVRGVPPKPE--D--DN-----VLQLAMQSQLKLFYRPKAI 135 (239)
T ss_pred CCCc--eEEEEEEEEEcCCCCC--C--Cc-----eEEEEEEeEEeEEEccccc
Confidence 5552 3445555555554211 0 00 0012346667777776543
No 20
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.38 E-value=0.41 Score=34.34 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=35.3
Q ss_pred EEEEEEEcCCCCeEEEEEEeCCCCcEEE-eCCce-EeCCCCeEEEEEEeccc
Q 031157 25 SCSMQLTNKTDKFVAFKVKTTNPKKYCV-RPNTG-IILPRTSCAVTVTMQAQ 74 (165)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~V-kP~~G-vI~Pg~s~~I~Itl~~~ 74 (165)
...|+|.|.+.++..|.|+...+..+.+ .|... -|+||+...+.+.+...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEEC
Confidence 4689999999999999999988778888 66555 49999999988887654
No 21
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=93.25 E-value=3.8 Score=33.25 Aligned_cols=111 Identities=14% Similarity=0.261 Sum_probs=67.9
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC----------CcEEEeCCceEeCCCCeEEEEEEeccccc
Q 031157 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQKE 76 (165)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~ 76 (165)
|.+.=..+.|+.. .....|+|.|.++.+..-....... ..|.|.|+.-.|+||+...++|.... ..
T Consensus 20 i~l~~TRvIy~~~---~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~~ 95 (226)
T PRK15218 20 IYIYGTRIIYPAQ---KKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA-NN 95 (226)
T ss_pred EEeCceEEEEcCC---CcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-CC
Confidence 3444445788753 4566899999998764333322221 15999999999999999999999875 34
Q ss_pred CCCCCCCCCeEEEEEEEcCCCCCccccccccccccC-CCeeEEEEeEEEEecCCC
Q 031157 77 APPDFQCKDKFLLLSVVAPDGATAKDIGPDMFTKED-GKVVEEFKLRVVYIPANP 130 (165)
Q Consensus 77 ~p~~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~-~~~i~~~kL~v~~~~~~~ 130 (165)
+|.|. .--|-+....+|+... + . +... =......+|++-|.|+.-
T Consensus 96 LP~DR--ESlfwlnv~~IPp~~~--~-~----~~~n~L~iairtrIKLfYRP~~L 141 (226)
T PRK15218 96 LPGDR--ESLFYLNVLDIPPNSD--E-N----KDKNIIKFALQNRIKLIYRPPGV 141 (226)
T ss_pred CCcce--eEEEEEEEEEcCCCCC--C-c----CcCcEEEEEeeeEEEEEEccccc
Confidence 56542 3345555556665211 0 0 0011 123446778888886554
No 22
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=93.11 E-value=4 Score=33.17 Aligned_cols=114 Identities=13% Similarity=0.249 Sum_probs=70.7
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCC-eEEEEEEe-C-C---CCcEEEeCCceEeCCCCeEEEEEEecccccCCC
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKT-T-N---PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKT-T-~---p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~ 79 (165)
-|.+.+..+.|+.. .....++|+|.+++ +..-.... + . ..-|.|.|+.-.|+||+...++|..... ..|.
T Consensus 28 gi~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~ 103 (228)
T PRK15188 28 GIALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPT 103 (228)
T ss_pred eEEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 36778888888864 45678999999864 33322222 1 1 1249999999999999999999998753 3555
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccCCCeeEEEEeEEEEecCCCC
Q 031157 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDGKVVEEFKLRVVYIPANPP 131 (165)
Q Consensus 80 ~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~~ 131 (165)
|. .--|-+....+|+.... +. .+..=......+|++-|.|..-+
T Consensus 104 DR--ESlf~lnv~~IP~~~~~-~~-----~~n~l~ia~r~~IKLFyRP~~l~ 147 (228)
T PRK15188 104 DR--ESVFYLNSKAIPSVDKN-KL-----TGNSLQIATQSVIKLFIRPKNLA 147 (228)
T ss_pred Cc--eEEEEEEEEecCCCCcc-cc-----ccceEEEEEeeeEEEEECCccCC
Confidence 42 34455555555542110 00 00001234577788888876543
No 23
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=92.82 E-value=2.7 Score=34.01 Aligned_cols=85 Identities=11% Similarity=0.161 Sum_probs=57.0
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCC-eEEEEEEe-CCC----CcEEEeCCceEeCCCCeEEEEEEecccccCCC
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKT-TNP----KKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKT-T~p----~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~ 79 (165)
-|.+.|..+.|... .....|+|.|.++. +....... ... .-|.|-|+.-.|+||+...|+|..... ..|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 47788888999864 45678999999863 33332222 211 239999999999999999999987642 3454
Q ss_pred CCCCCCeEEEEEEEcCC
Q 031157 80 DFQCKDKFLLLSVVAPD 96 (165)
Q Consensus 80 ~~~~~dkFlVq~~~~~~ 96 (165)
|. .--|.+....+|+
T Consensus 98 Dr--ESlf~lnv~eIP~ 112 (228)
T PRK15208 98 DR--ESVYWINVKAIPA 112 (228)
T ss_pred Ce--eEEEEEEEEEcCC
Confidence 42 2335555555554
No 24
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=91.78 E-value=2.7 Score=34.15 Aligned_cols=113 Identities=11% Similarity=0.167 Sum_probs=67.7
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCC-eEE-EEEEeCC----CCcEEEeCCceEeCCCCeEEEEEEecccccCCC
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDK-FVA-FKVKTTN----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPP 79 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~va-FKVKTT~----p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~ 79 (165)
-|.+++..+.|... .....|+|.|.++. +.. ...-... ...|.|.|+.--|+||+...|+|..... ..|.
T Consensus 26 gi~i~~TRvIy~~~---~~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~ 101 (229)
T PRK15195 26 GIALGATRVIYPAD---AKQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAA 101 (229)
T ss_pred eEEECCeEEEEeCC---CceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 36788888888864 33578999999864 333 2211111 1259999999999999999999998742 3454
Q ss_pred CCCCCCeEEEEEEEcCCCCCccccccccccccCC-CeeEEEEeEEEEecCCC
Q 031157 80 DFQCKDKFLLLSVVAPDGATAKDIGPDMFTKEDG-KVVEEFKLRVVYIPANP 130 (165)
Q Consensus 80 ~~~~~dkFlVq~~~~~~~~~~~d~~~~~f~~~~~-~~i~~~kL~v~~~~~~~ 130 (165)
|. .--|.+....+|+.... .. ..... ......+|++-|.|..-
T Consensus 102 Dr--ESlf~Lnv~eIP~~~~~-~~-----~~~n~l~iair~~iKlFyRP~~l 145 (229)
T PRK15195 102 DR--ESLFWMNVKAIPSVDKN-AL-----EGRNVLQLAILSRIKLFVRPINL 145 (229)
T ss_pred Ce--eEEEEEEeeecCCCCcc-cc-----cccceEEEEEEeEEEEEEccccc
Confidence 42 22355555555542110 00 00111 23456777887876544
No 25
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=90.83 E-value=6.3 Score=32.27 Aligned_cols=77 Identities=10% Similarity=0.191 Sum_probs=53.2
Q ss_pred CeeEEeccCCCceEEEEEEEcCCCCeEEEEEEe----CC---CCcEEEeCCceEeCCCCeEEEEEEecccccCCCCCCCC
Q 031157 12 SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT----TN---PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCK 84 (165)
Q Consensus 12 ~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT----T~---p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~~~~~~ 84 (165)
..+.|+.. .....|+|.|.++.+ |-|++ .. ..-|.|.|+.-.|+|++...++|.... ..+|.|. .
T Consensus 35 TRvIy~~~---~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~-~~LP~DR--E 106 (237)
T PRK15224 35 TRVIYHAG---TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTG-GDMPTDR--E 106 (237)
T ss_pred eEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECC-CCCCCce--e
Confidence 35777753 456789999999876 55555 11 124999999999999999999999874 3456552 2
Q ss_pred CeEEEEEEEcCC
Q 031157 85 DKFLLLSVVAPD 96 (165)
Q Consensus 85 dkFlVq~~~~~~ 96 (165)
--|-+....+|+
T Consensus 107 SlFwlnv~~IPp 118 (237)
T PRK15224 107 TLQWVCIKAVPP 118 (237)
T ss_pred EEEEEEEEEcCC
Confidence 334455555554
No 26
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=89.95 E-value=8.9 Score=31.78 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=54.3
Q ss_pred EeCCeeEEeccCCCceEEEEEEEcCCCC-eEEEEEEeCCC------CcEEEeCCceEeCCCCeEEEEEEecc-cccCCCC
Q 031157 9 IQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTTNP------KKYCVRPNTGIILPRTSCAVTVTMQA-QKEAPPD 80 (165)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT~p------~~Y~VkP~~GvI~Pg~s~~I~Itl~~-~~~~p~~ 80 (165)
+.=..++|+.. .....|+|.|.++. +..-....... .-|.|.|+.-.|+||+...|+|...+ ...+|.|
T Consensus 30 l~~TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~D 106 (257)
T PRK15274 30 PDRTRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQD 106 (257)
T ss_pred eCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCc
Confidence 33345888753 44678999999865 54444332211 24999999999999999999999875 2345654
Q ss_pred CCCCCeEEEEEEEcCC
Q 031157 81 FQCKDKFLLLSVVAPD 96 (165)
Q Consensus 81 ~~~~dkFlVq~~~~~~ 96 (165)
. .--|-+....+|+
T Consensus 107 R--ESlFwlNv~eIPp 120 (257)
T PRK15274 107 R--ESLFYFNVREIPP 120 (257)
T ss_pred e--eEEEEEEEEEcCC
Confidence 2 2334455555554
No 27
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=89.46 E-value=10 Score=31.13 Aligned_cols=83 Identities=13% Similarity=0.226 Sum_probs=54.4
Q ss_pred EEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC----------CcEEEeCCceEeCCCCeEEEEEEecccccC
Q 031157 8 NIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP----------KKYCVRPNTGIILPRTSCAVTVTMQAQKEA 77 (165)
Q Consensus 8 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p----------~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~ 77 (165)
.++-..+.|+.. .....|+|.|.++.+..-....... .-|.|.|+.-.|+|++...|+|...+ ..+
T Consensus 36 ~l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~-~~L 111 (242)
T PRK15253 36 VIYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMP-NSL 111 (242)
T ss_pred EeCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC-CCC
Confidence 333345777753 4566899999998764333322211 24999999999999999999998764 345
Q ss_pred CCCCCCCCeEEEEEEEcCC
Q 031157 78 PPDFQCKDKFLLLSVVAPD 96 (165)
Q Consensus 78 p~~~~~~dkFlVq~~~~~~ 96 (165)
|.|. .--|-+....+|+
T Consensus 112 P~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 112 PDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred Ccce--eEEEEEEEEEcCC
Confidence 6542 2345555555554
No 28
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=88.98 E-value=12 Score=30.89 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=52.3
Q ss_pred CeeEEeccCCCceEEEEEEEcCCCCeEEEEEEe--CC-----CCcEEEeCCceEeCCCCeEEEEEEecccccCCCCCCCC
Q 031157 12 SELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT--TN-----PKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCK 84 (165)
Q Consensus 12 ~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT--T~-----p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~~~~~~ 84 (165)
..+.|+.. .....|+|.|.++.+ |-|++ .. ..-|.|.|+.-.|+||+...++|..... ..|.|. .
T Consensus 47 TRvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DR--E 118 (246)
T PRK15233 47 TRVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNE--E 118 (246)
T ss_pred eEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCc--e
Confidence 34666653 356789999988776 44444 11 1249999999999999999999998753 455542 2
Q ss_pred CeEEEEEEEcCC
Q 031157 85 DKFLLLSVVAPD 96 (165)
Q Consensus 85 dkFlVq~~~~~~ 96 (165)
--|-+....+|+
T Consensus 119 Slfwlnv~~IPp 130 (246)
T PRK15233 119 SLYWLCVKGVPP 130 (246)
T ss_pred EEEEEEEEEcCC
Confidence 235555555665
No 29
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=88.08 E-value=14 Score=30.53 Aligned_cols=83 Identities=20% Similarity=0.135 Sum_probs=53.7
Q ss_pred EeCCeeEEeccCCCceEEEEEEEcCCCC-eEEEEEEeC--CC----CcEEEeCCceEeCCCCeEEEEEEecc-cccCCCC
Q 031157 9 IQPSELKFPFELKKQSSCSMQLTNKTDK-FVAFKVKTT--NP----KKYCVRPNTGIILPRTSCAVTVTMQA-QKEAPPD 80 (165)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~-~vaFKVKTT--~p----~~Y~VkP~~GvI~Pg~s~~I~Itl~~-~~~~p~~ 80 (165)
++-..+.|+.. .....++|+|.++. +..-..... .. .-|.|-|+.-.|+||+...++|...+ ...+|.|
T Consensus 29 l~~TRVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D 105 (250)
T PRK15285 29 PDRTRLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD 105 (250)
T ss_pred eCccEEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC
Confidence 33345788753 45678999999864 443333221 11 13999999999999999999999875 2345654
Q ss_pred CCCCCeEEEEEEEcCC
Q 031157 81 FQCKDKFLLLSVVAPD 96 (165)
Q Consensus 81 ~~~~dkFlVq~~~~~~ 96 (165)
. .--|-+....+|+
T Consensus 106 R--ESlfwlnv~~IPp 119 (250)
T PRK15285 106 R--ETLFYYNVREIPP 119 (250)
T ss_pred c--eEEEEEEEEEcCC
Confidence 2 3345555555555
No 30
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=87.54 E-value=1.7 Score=30.85 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=32.1
Q ss_pred CceEEEEEEEcCCCCeEEEEEEeCC--------CCcEEE-e------------CCceEeCCCCeEEEEEEeccc
Q 031157 22 KQSSCSMQLTNKTDKFVAFKVKTTN--------PKKYCV-R------------PNTGIILPRTSCAVTVTMQAQ 74 (165)
Q Consensus 22 ~~~~~~l~L~N~s~~~vaFKVKTT~--------p~~Y~V-k------------P~~GvI~Pg~s~~I~Itl~~~ 74 (165)
......|+|+|.+++.+.|++.-.. .+.|.. . |..=.|+||++..|.|++.+.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 3467899999999999999987551 112221 1 222257888888888888764
No 31
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=85.51 E-value=17 Score=29.75 Aligned_cols=84 Identities=13% Similarity=0.169 Sum_probs=61.6
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEe---CCC---------------CcEEEeCCceEeCCCCeEEE
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKT---TNP---------------KKYCVRPNTGIILPRTSCAV 67 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKT---T~p---------------~~Y~VkP~~GvI~Pg~s~~I 67 (165)
-|.|.|-.+.+... ......++|+|.++++..++|+. ++| ..-.+.|..-.|.||++..|
T Consensus 17 ~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~I 94 (234)
T PRK15308 17 NMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTV 94 (234)
T ss_pred eEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEE
Confidence 46788888777643 24567899999999888877652 121 24778899999999999999
Q ss_pred EEEecccccCCCCCCCCCeEEEEEEEcCCC
Q 031157 68 TVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (165)
Q Consensus 68 ~Itl~~~~~~p~~~~~~dkFlVq~~~~~~~ 97 (165)
.+..... + + ...-|.|...++++.
T Consensus 95 Rli~lg~---~-~--kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 95 RVISLQA---P-E--REEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEcCC---C-C--cEEEEEEEEEecCCc
Confidence 9887652 2 2 345688888887753
No 32
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=82.44 E-value=6.7 Score=34.23 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=43.2
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEE----------------------EeCCceEeCCCCe
Q 031157 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYC----------------------VRPNTGIILPRTS 64 (165)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~----------------------VkP~~GvI~Pg~s 64 (165)
+.+.-.+-+|.- .++...-+++++|.++++|-..=-+|+.-+|. |.|+ +-|+|||+
T Consensus 249 V~~~v~~A~Y~v-pgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-~pI~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRV-PGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-SPIAPGET 326 (381)
T ss_dssp EEEEEEEEEEES-SSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---S-B-TT-E
T ss_pred eEEEEeccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-CCcCCCce
Confidence 555555666665 46788999999999999998886666655553 3333 35999999
Q ss_pred EEEEEEecc
Q 031157 65 CAVTVTMQA 73 (165)
Q Consensus 65 ~~I~Itl~~ 73 (165)
.++.|+.+.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999874
No 33
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=81.04 E-value=4.2 Score=35.49 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=40.7
Q ss_pred CCCceEEEEEEEcCCCCeEEEEEEeCCCCcE-------EEeCCce--------------EeCCCCeEEEEEEeccc
Q 031157 20 LKKQSSCSMQLTNKTDKFVAFKVKTTNPKKY-------CVRPNTG--------------IILPRTSCAVTVTMQAQ 74 (165)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y-------~VkP~~G--------------vI~Pg~s~~I~Itl~~~ 74 (165)
.++..+-+++|+|.++++|-.+=-+|+.-|| ...|.+. -|.|||+.+|.|..+.-
T Consensus 280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 4678889999999999999888666655444 3333332 38999999999988753
No 34
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=80.24 E-value=7 Score=27.28 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=40.4
Q ss_pred CCCceEEEEEEEcCCCCe--------EEEEEEeCCCC--cEEEeCCceEeCCCCeEEEEEEeccc
Q 031157 20 LKKQSSCSMQLTNKTDKF--------VAFKVKTTNPK--KYCVRPNTGIILPRTSCAVTVTMQAQ 74 (165)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~--------vaFKVKTT~p~--~Y~VkP~~GvI~Pg~s~~I~Itl~~~ 74 (165)
.++.....++++|++..+ .++-|--|.-. ....+-..+-|+||++..+.+.+.+.
T Consensus 13 vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 13 VGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp TTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 467789999999999877 66666655433 25677889999999999999999875
No 35
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=79.78 E-value=8.6 Score=26.14 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=32.8
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCCCcEE-EeCCceEeCCCCeEEEEEEec
Q 031157 24 SSCSMQLTNKTDKFVAFKVKTTNPKKYC-VRPNTGIILPRTSCAVTVTMQ 72 (165)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~~Y~-VkP~~GvI~Pg~s~~I~Itl~ 72 (165)
..-.|+|.|.+...+.|.|.... |. -.|-.=.|.||++..+.+-+.
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~---y~~~~~~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNA---YGGGGPWTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCC---cCCCCCEEEEECCCCEEEEEEeec
Confidence 36689999999999999998721 22 223334566688888888773
No 36
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=77.44 E-value=3.5 Score=27.28 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=31.2
Q ss_pred CceEEEEEEEcCCCCeE-EEEEEeCCCCcEE--EeCCc-eEeCCCCeEEEEEEecccc
Q 031157 22 KQSSCSMQLTNKTDKFV-AFKVKTTNPKKYC--VRPNT-GIILPRTSCAVTVTMQAQK 75 (165)
Q Consensus 22 ~~~~~~l~L~N~s~~~v-aFKVKTT~p~~Y~--VkP~~-GvI~Pg~s~~I~Itl~~~~ 75 (165)
......++|+|.+..++ ..++.-..|.-+. ..|.. +-|+||++..+.+.+.+..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 35667899999987543 2455545588766 55553 4799999999999998743
No 37
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=74.29 E-value=19 Score=24.45 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=12.7
Q ss_pred EEEEEEEcCCCCeEEEEEEe
Q 031157 25 SCSMQLTNKTDKFVAFKVKT 44 (165)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKT 44 (165)
.-.|+|+|.++++|-+...|
T Consensus 3 ~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEeCCCCeEEEEeCC
Confidence 45677888888777777654
No 38
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=72.31 E-value=21 Score=24.99 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=33.0
Q ss_pred CceEEEEEEEcCCCCeEE-----EEEEeCCCCcEEEeC---------CceEeCCCCeEEEEEEecc
Q 031157 22 KQSSCSMQLTNKTDKFVA-----FKVKTTNPKKYCVRP---------NTGIILPRTSCAVTVTMQA 73 (165)
Q Consensus 22 ~~~~~~l~L~N~s~~~va-----FKVKTT~p~~Y~VkP---------~~GvI~Pg~s~~I~Itl~~ 73 (165)
+-..-.++|+|.+++++. |++.+..-..|.... ..+-|.||+++.-.|.+.-
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 446778999999998886 678877666776554 3478999999998888864
No 39
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=69.90 E-value=50 Score=29.46 Aligned_cols=69 Identities=7% Similarity=0.073 Sum_probs=45.3
Q ss_pred ceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeC--CceEeCCCCeEEEEEEecccccCCCCCCCCCeEEEEEEE
Q 031157 23 QSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRP--NTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVV 93 (165)
Q Consensus 23 ~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VkP--~~GvI~Pg~s~~I~Itl~~~~~~p~~~~~~dkFlVq~~~ 93 (165)
.-...++|.|.+.++..|.++........+.- ..=.|+||+..++.|++........ ...+.|.+....
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~~~~--~~~~~i~~~v~~ 417 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDALK--SGITSIEIRAYA 417 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechhhcc--CCceeEEEEEEE
Confidence 34578999999999888888877544433332 2448999999988888765422111 234556655443
No 40
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.61 E-value=28 Score=27.25 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=41.5
Q ss_pred CCCceEEEEEEEcCCCCeEEEEEEeCC----CCcEEEeC-----CceEeCCCCeEEEEEEeccc
Q 031157 20 LKKQSSCSMQLTNKTDKFVAFKVKTTN----PKKYCVRP-----NTGIILPRTSCAVTVTMQAQ 74 (165)
Q Consensus 20 ~~~~~~~~l~L~N~s~~~vaFKVKTT~----p~~Y~VkP-----~~GvI~Pg~s~~I~Itl~~~ 74 (165)
.++.....++|+|.++. -||.|+-+. ++.|.+.- ....|+||+++.-.+++.|.
T Consensus 36 ~g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 36 EGEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK 98 (181)
T ss_pred CCcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee
Confidence 35678899999999877 789999887 34555432 25788999999888888874
No 41
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=69.28 E-value=6.1 Score=30.55 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=26.3
Q ss_pred EEEEeCCCCcEEEeCCceE--eCCCCeEEEEEEecc
Q 031157 40 FKVKTTNPKKYCVRPNTGI--ILPRTSCAVTVTMQA 73 (165)
Q Consensus 40 FKVKTT~p~~Y~VkP~~Gv--I~Pg~s~~I~Itl~~ 73 (165)
|+|.-=+-+.|++.|.-|+ |+||+++.|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 7787778889999999987 899999999998654
No 42
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=68.38 E-value=34 Score=23.38 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=38.1
Q ss_pred CceEEEEEEEcCCCCeEE-EEEEeCCCCcEEEe--CCce-EeCCCCeEEEEEEecc
Q 031157 22 KQSSCSMQLTNKTDKFVA-FKVKTTNPKKYCVR--PNTG-IILPRTSCAVTVTMQA 73 (165)
Q Consensus 22 ~~~~~~l~L~N~s~~~va-FKVKTT~p~~Y~Vk--P~~G-vI~Pg~s~~I~Itl~~ 73 (165)
....-.+...|.+..++- |.+.-..|..+.++ |..| .|+||+.+.-.+.+..
T Consensus 18 ~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~ 73 (104)
T smart00809 18 GLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVEN 73 (104)
T ss_pred CeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEEC
Confidence 467788999999987765 77777667655554 5544 7999988777777665
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=65.72 E-value=38 Score=23.36 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=32.8
Q ss_pred EEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEe
Q 031157 8 NIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (165)
Q Consensus 8 ~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~Itl 71 (165)
.++|++|.... .....|+++|.+...-.|.+..- .+ ...|.||++..+.++-
T Consensus 31 ~f~P~~i~v~~----G~~v~l~~~N~~~~~h~~~i~~~-----~~---~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 31 GFSPSTITVKA----GQPVTLTFTNNDSRPHEFVIPDL-----GI---SKVLPPGETATVTFTP 82 (104)
T ss_dssp EEES-EEEEET----TCEEEEEEEE-SSS-EEEEEGGG-----TE---EEEE-TT-EEEEEEEE
T ss_pred eEecCEEEEcC----CCeEEEEEEECCCCcEEEEECCC-----ce---EEEECCCCEEEEEEcC
Confidence 56777777653 23456999999988888877661 11 2679999999988853
No 44
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=60.46 E-value=8.1 Score=24.73 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=26.1
Q ss_pred EEEEcCCCCeEEEE-EEeCCCCcEEEeCCceEeCCCCeEEEEEE
Q 031157 28 MQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTVT 70 (165)
Q Consensus 28 l~L~N~s~~~vaFK-VKTT~p~~Y~VkP~~GvI~Pg~s~~I~It 70 (165)
|+++|+|...|.|- ++....++=.--...++|+|+++..+.+.
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~ 44 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLP 44 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETS
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEecc
Confidence 68999999888886 44443333222234449999999887653
No 45
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=60.31 E-value=27 Score=24.27 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=33.3
Q ss_pred CceEEEEEEEcCCCCeEE-EEEEeCCC-----------------CcEEEeCC--ceEeCCCCeEEEEEEecc
Q 031157 22 KQSSCSMQLTNKTDKFVA-FKVKTTNP-----------------KKYCVRPN--TGIILPRTSCAVTVTMQA 73 (165)
Q Consensus 22 ~~~~~~l~L~N~s~~~va-FKVKTT~p-----------------~~Y~VkP~--~GvI~Pg~s~~I~Itl~~ 73 (165)
......|+|+|.++.++. ++|.=+-| ..|.|+|. -+.|+||+++.+-+....
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~ 84 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASG 84 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeC
Confidence 345567888888877652 44433322 56777765 368888888776665543
No 46
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=56.17 E-value=56 Score=21.54 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=34.9
Q ss_pred CCceEEEEEEEcCCCC-eEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEeccc
Q 031157 21 KKQSSCSMQLTNKTDK-FVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQ 74 (165)
Q Consensus 21 ~~~~~~~l~L~N~s~~-~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~ 74 (165)
+....-.++|+|.+.. .=.|+|+-...+...-.-..+-|+||++..+.+++.+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 4567888999999874 45566664433333333334788999999999998874
No 47
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=48.21 E-value=47 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=22.5
Q ss_pred ccCCCceEEEEEEEcCCCCeEEEEEEe
Q 031157 18 FELKKQSSCSMQLTNKTDKFVAFKVKT 44 (165)
Q Consensus 18 ~~~~~~~~~~l~L~N~s~~~vaFKVKT 44 (165)
...+..+.-.|+|+|.+++.+.|+|.-
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~tv~v~~ 49 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEITVKVSA 49 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEEEEEEE
Confidence 355677888999999999999999863
No 48
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=46.00 E-value=70 Score=22.27 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=42.9
Q ss_pred CCceEEEEEEEcCCCCeEE-EEEEe--CCCCcEEEeCC-ceEeCCCCeEEEEEEecc-cccCCCCCCCCCeEEEEEEEcC
Q 031157 21 KKQSSCSMQLTNKTDKFVA-FKVKT--TNPKKYCVRPN-TGIILPRTSCAVTVTMQA-QKEAPPDFQCKDKFLLLSVVAP 95 (165)
Q Consensus 21 ~~~~~~~l~L~N~s~~~va-FKVKT--T~p~~Y~VkP~-~GvI~Pg~s~~I~Itl~~-~~~~p~~~~~~dkFlVq~~~~~ 95 (165)
.....-.++..|.+..++. |.+.- .......+.|. ...|+|+..+.-.+.+.. ....+.....+=|+.|.+..-+
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vsy~~~g 102 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVENSPFSEPTPKPLKPRLRVSYNVGG 102 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEESS-BSTTSSTTEEEEEEEEEETT
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEEeecccCCCCCcCeEEEEEEEECC
Confidence 4567788999999886655 55554 44456677777 459999998776666554 1111112223456666665543
No 49
>smart00637 CBD_II CBD_II domain.
Probab=43.27 E-value=1e+02 Score=20.73 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=29.7
Q ss_pred eEEEEEEEcCCCCeE-----EEEEEe------------C-CCCcEEEeCC--ceEeCCCCeEEEEEEe
Q 031157 24 SSCSMQLTNKTDKFV-----AFKVKT------------T-NPKKYCVRPN--TGIILPRTSCAVTVTM 71 (165)
Q Consensus 24 ~~~~l~L~N~s~~~v-----aFKVKT------------T-~p~~Y~VkP~--~GvI~Pg~s~~I~Itl 71 (165)
....|+|+|.+..++ .|.+-- + ....|.+.|. -+.|+||+++.+-+..
T Consensus 8 ~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 8 FTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 456788888766443 333211 1 2236888864 3789999888776655
No 50
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=40.50 E-value=1.3e+02 Score=22.75 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=34.3
Q ss_pred CceEEEEEEEcCCCCeEE-EEEEeCC---CCcEEEeCCceEeCCCCeEEEEEEe
Q 031157 22 KQSSCSMQLTNKTDKFVA-FKVKTTN---PKKYCVRPNTGIILPRTSCAVTVTM 71 (165)
Q Consensus 22 ~~~~~~l~L~N~s~~~va-FKVKTT~---p~~Y~VkP~~GvI~Pg~s~~I~Itl 71 (165)
.-+.-.|+++|.++..+. -+|.... ..+-.-.|..+.|+||+++.+.+-.
T Consensus 85 ~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred CcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 456678999999986543 2333332 3345556889999999998877654
No 51
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=38.21 E-value=90 Score=25.61 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=28.9
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 031157 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (165)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VkP~~GvI~Pg~s~~I~I 69 (165)
.|+|+|+|..++.|. ++....+ -.+....|+|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 499999999988776 4322222 12223458999999998875
No 52
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.64 E-value=1e+02 Score=24.90 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCeEEEE--EEeCCCCcEEEeCCceEeCCCCeEEEEEE
Q 031157 26 CSMQLTNKTDKFVAFK--VKTTNPKKYCVRPNTGIILPRTSCAVTVT 70 (165)
Q Consensus 26 ~~l~L~N~s~~~vaFK--VKTT~p~~Y~VkP~~GvI~Pg~s~~I~It 70 (165)
..|+++|++..++.|- .-+. .++-.. -..+.|.|+++..+.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecC
Confidence 6899999999999998 3333 333222 67889999998886554
No 53
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=36.46 E-value=1.2e+02 Score=19.82 Aligned_cols=60 Identities=7% Similarity=0.114 Sum_probs=38.6
Q ss_pred CCeeEEeccCCCceEEEEEEEcCCC--CeEEEEEEeC---CCCcEEEeCCceEeCCCCeEEEEEEe
Q 031157 11 PSELKFPFELKKQSSCSMQLTNKTD--KFVAFKVKTT---NPKKYCVRPNTGIILPRTSCAVTVTM 71 (165)
Q Consensus 11 P~eL~F~~~~~~~~~~~l~L~N~s~--~~vaFKVKTT---~p~~Y~VkP~~GvI~Pg~s~~I~Itl 71 (165)
|..|.|...........|.|.|-.. ......|.+. ..+.|.+.++.+ |.++....|+|.-
T Consensus 14 ~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~-l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 14 PITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSD-LPSGGDYFIQIVN 78 (93)
T ss_pred cEEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCC-CCCCCcEEEEEEE
Confidence 3367777654456778899998776 2223344322 237888888776 6666677777773
No 54
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=36.25 E-value=1e+02 Score=18.91 Aligned_cols=65 Identities=12% Similarity=0.202 Sum_probs=37.6
Q ss_pred EEEeCCeeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCCCcEEE-eCCce---EeCCCCeEEEEEEe
Q 031157 7 VNIQPSELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNPKKYCV-RPNTG---IILPRTSCAVTVTM 71 (165)
Q Consensus 7 L~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~V-kP~~G---vI~Pg~s~~I~Itl 71 (165)
|-|-|++|.+.........+.++-.=-......+.+++.......+ .+... .+++|+.+.+.+.-
T Consensus 1 l~iRPE~i~l~~~~~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~~~~ 69 (75)
T PF08402_consen 1 LGIRPEDIRLSPEGENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNSQRDSPLEPGDEVRLSWDP 69 (75)
T ss_dssp EEE-GGGEEEESSTTTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESSG-TTT--TTSEEEEEEEG
T ss_pred CEECcceeEEECCCCCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCccccCCCCCCCEEEEEECc
Confidence 5678888777522223555555444444577777788877665333 34444 68888888777643
No 55
>PF13205 Big_5: Bacterial Ig-like domain
Probab=34.73 E-value=1.4e+02 Score=19.97 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=35.6
Q ss_pred eeEEeccCC-CceEEEEEEEc--CCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEe
Q 031157 13 ELKFPFELK-KQSSCSMQLTN--KTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTM 71 (165)
Q Consensus 13 eL~F~~~~~-~~~~~~l~L~N--~s~~~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~Itl 71 (165)
.|.|..+.. ......+.+.. ....+|.+. ......+.+.|... |.+|..+.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~~~-L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPSQP-LKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEECCc-CCCCCEEEEEECC
Confidence 477776543 23444556643 334555555 33458899999854 8889999988843
No 56
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=33.29 E-value=53 Score=25.91 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=16.3
Q ss_pred CCceEeCCCCeEEEEEEec
Q 031157 54 PNTGIILPRTSCAVTVTMQ 72 (165)
Q Consensus 54 P~~GvI~Pg~s~~I~Itl~ 72 (165)
|.+.-|+||+++++.+..-
T Consensus 123 p~wqslapG~s~~~~~~Yy 141 (180)
T PF06483_consen 123 PAWQSLAPGASVELDMVYY 141 (180)
T ss_pred CCccccCCCCEEEEeEEEE
Confidence 8888999999999988753
No 57
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=31.51 E-value=1.4e+02 Score=23.97 Aligned_cols=39 Identities=18% Similarity=0.422 Sum_probs=28.6
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 031157 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (165)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VkP~~GvI~Pg~s~~I~I 69 (165)
.|+|.|+|...+.|- ++.... . +. ..|+|.|+++..+.+
T Consensus 158 ~l~v~NptPyyitl~~l~~~~~-~--~~-~~~mI~P~s~~~~~~ 197 (226)
T PRK15295 158 VITVNNPTPYYMNFASVTLNSH-E--VK-SATFVPPKSSASFKL 197 (226)
T ss_pred EEEEECCCceEEEEEEEEECCc-c--cC-CCceECCCCccEEEc
Confidence 499999999999765 554322 2 22 358999999998875
No 58
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=31.09 E-value=1.7e+02 Score=19.92 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=32.2
Q ss_pred cEEEeCCeeEEeccCCCceEEEEEEEcCCC--CeEEEEEEeCCCCcEEEeC----CceEeCCCCeEEEEEE
Q 031157 6 LVNIQPSELKFPFELKKQSSCSMQLTNKTD--KFVAFKVKTTNPKKYCVRP----NTGIILPRTSCAVTVT 70 (165)
Q Consensus 6 lL~i~P~eL~F~~~~~~~~~~~l~L~N~s~--~~vaFKVKTT~p~~Y~VkP----~~GvI~Pg~s~~I~It 70 (165)
-+.++|++|.+..- . .++++|.+. +.+.|.=.......-...+ ..+.+.||++..+.++
T Consensus 11 ~~~F~P~~i~v~~G--~----~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~ 75 (99)
T TIGR02656 11 ALVFEPAKISIAAG--D----TVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFS 75 (99)
T ss_pred ceeEeCCEEEECCC--C----EEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeC
Confidence 36788998887743 1 367778754 4455432111111101111 2356789999888654
No 59
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=29.46 E-value=1e+02 Score=23.95 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=44.3
Q ss_pred ceEEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecccccCCCCCCCCCeEEEEEEEcCCC
Q 031157 23 QSSCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVAPDG 97 (165)
Q Consensus 23 ~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~~~~~~dkFlVq~~~~~~~ 97 (165)
...-..-|.|-|+..+.|-.-+...+.|.+| +.|.|+|+..+-|.-.-... ...-.+..||.+.--.+
T Consensus 17 ~T~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~e------LN~~~~v~vQ~iAyK~~ 84 (162)
T PF09640_consen 17 TTRFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKEE------LNDLERVAVQLIAYKKD 84 (162)
T ss_dssp T--EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GGG------GGG-SSEEEEEEEE-SS
T ss_pred CCceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHHH------hhccceeEEEEEEEcCC
Confidence 3455778999999999999998888888888 68999999887765433321 11245566666655544
No 60
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=28.50 E-value=2e+02 Score=19.71 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=22.9
Q ss_pred CCceEEEEEEEcCCCCe--EEEEEEeCCCCcEEEeCC
Q 031157 21 KKQSSCSMQLTNKTDKF--VAFKVKTTNPKKYCVRPN 55 (165)
Q Consensus 21 ~~~~~~~l~L~N~s~~~--vaFKVKTT~p~~Y~VkP~ 55 (165)
++.....+.|+|.+..+ +.||+-==..+-+.|.|.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~ 59 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE 59 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC
Confidence 67889999999999765 777776557777777665
No 61
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=28.26 E-value=1.9e+02 Score=19.53 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=33.4
Q ss_pred CeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecccccCCCCCCCCCeEEEE
Q 031157 36 KFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLL 90 (165)
Q Consensus 36 ~~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~~~p~~~~~~dkFlVq 90 (165)
.++-|-+.|..-.--.+-+....+.||++..+++.|... .+ ....|+|.|.
T Consensus 34 ~~v~~~~Gt~~v~~ri~ll~~~~~~pg~~~~a~l~l~~p--l~--~~~gdrfilR 84 (97)
T cd04094 34 QRVHLHHGTSEVLARVVLLDRDELAPGEEALAQLRLEEP--LV--ALRGDRFILR 84 (97)
T ss_pred CeEEEEeccceEEEEEEeCCccccCCCCEEEEEEEECCc--Ee--ecCCCeEEEe
Confidence 666677766652222223446678999999999998752 12 2357999994
No 62
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=27.25 E-value=2.1e+02 Score=23.22 Aligned_cols=42 Identities=29% Similarity=0.448 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCeEEEE-EEeCCC-CcEEEeCCceEeCCCCeEEEEE
Q 031157 26 CSMQLTNKTDKFVAFK-VKTTNP-KKYCVRPNTGIILPRTSCAVTV 69 (165)
Q Consensus 26 ~~l~L~N~s~~~vaFK-VKTT~p-~~Y~VkP~~GvI~Pg~s~~I~I 69 (165)
..|+++|+|..++.|. ++-... ..+.+ ..+.|.|+++..+.+
T Consensus 173 ~~L~v~Nptpy~itl~~l~~~~~g~~~~~--~~~mi~P~s~~~~~l 216 (246)
T PRK09926 173 ASLRVTNPTPYYVSFSSGDLEAGGKRYPV--DSKMIAPFSDESMKV 216 (246)
T ss_pred EEEEEECCCceEEEEEeeeeecCCeeccc--CcceECCCCcceEec
Confidence 4599999999988765 332222 22322 347899999988875
No 63
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=25.79 E-value=47 Score=22.96 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=14.3
Q ss_pred EEEEEeCCCC--cEEEeCCceEe
Q 031157 39 AFKVKTTNPK--KYCVRPNTGII 59 (165)
Q Consensus 39 aFKVKTT~p~--~Y~VkP~~GvI 59 (165)
+||+|+.... ||++.|+.|+-
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~ 24 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLE 24 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHH
Confidence 5888876544 57777777743
No 64
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=25.34 E-value=1.7e+02 Score=21.29 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=18.8
Q ss_pred CCcEEEeC--CceEeCCCCeEEEEEEecc
Q 031157 47 PKKYCVRP--NTGIILPRTSCAVTVTMQA 73 (165)
Q Consensus 47 p~~Y~VkP--~~GvI~Pg~s~~I~Itl~~ 73 (165)
|..|...+ ...-|.||+++.+.+.+..
T Consensus 108 P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 108 PADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred hHHhcccccccccccCCCCeEEEEEEeeC
Confidence 44554443 2445999999999998874
No 65
>COG1470 Predicted membrane protein [Function unknown]
Probab=24.96 E-value=5.4e+02 Score=23.58 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=44.6
Q ss_pred cCCCceEEEEEEEcCCCCeEE-EEEEeCCCCc--EEEeCC-ceEeCCCCeEEEEEEecccccCCCCCCCCCeEEEEEEEc
Q 031157 19 ELKKQSSCSMQLTNKTDKFVA-FKVKTTNPKK--YCVRPN-TGIILPRTSCAVTVTMQAQKEAPPDFQCKDKFLLLSVVA 94 (165)
Q Consensus 19 ~~~~~~~~~l~L~N~s~~~va-FKVKTT~p~~--Y~VkP~-~GvI~Pg~s~~I~Itl~~~~~~p~~~~~~dkFlVq~~~~ 94 (165)
..+......+.|.|.++-++. -|+.-..|.- -.|.|+ .--|+||++..|.++... |+++...|++.-..+..
T Consensus 394 taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~v----P~~a~aGdY~i~i~~ks 469 (513)
T COG1470 394 TAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITV----PEDAGAGDYRITITAKS 469 (513)
T ss_pred cCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEc----CCCCCCCcEEEEEEEee
Confidence 345567778999999874332 3344444554 445566 457899999888888876 34444456655444443
No 66
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=24.33 E-value=2e+02 Score=23.43 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=27.4
Q ss_pred EEEEEcCCCCeEEEE-EEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 031157 27 SMQLTNKTDKFVAFK-VKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (165)
Q Consensus 27 ~l~L~N~s~~~vaFK-VKTT~p~~Y~VkP~~GvI~Pg~s~~I~I 69 (165)
.|++.|+|...|.|. ++-.. .. + ...++|+|.++..+.+
T Consensus 163 ~l~v~NpTPyyvtl~~l~v~~-~~--~-~~~~miaPfs~~~~~~ 202 (234)
T PRK15192 163 GATVRNPTPYYVTLFLLRANE-RA--Q-DNAGVVAPFATRQTDW 202 (234)
T ss_pred EEEEECCCCcEEEEEeEEEcC-cc--c-CCCceECCCCccEEec
Confidence 399999999999875 33322 11 2 2347899999888876
No 67
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=24.19 E-value=1.1e+02 Score=21.84 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=20.1
Q ss_pred eEEEEEEEcCCCCeEEEEEEeCCCC
Q 031157 24 SSCSMQLTNKTDKFVAFKVKTTNPK 48 (165)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKVKTT~p~ 48 (165)
..-+|++.+-...-+-||||.++|-
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~L 43 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPL 43 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChH
Confidence 4567888886678889999988864
No 68
>smart00605 CW CW domain.
Probab=24.01 E-value=1.1e+02 Score=20.68 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=13.5
Q ss_pred EEEEEcC-CCCeEEEEEEeCCC
Q 031157 27 SMQLTNK-TDKFVAFKVKTTNP 47 (165)
Q Consensus 27 ~l~L~N~-s~~~vaFKVKTT~p 47 (165)
.|+-.+. +...||||+.++.+
T Consensus 58 ~v~~~~~~~~~~VAfK~~~~~~ 79 (94)
T smart00605 58 TVKKLSSSSGKKVAFKVSTDQP 79 (94)
T ss_pred EEEEccCCCCcEEEEEEeCCCC
Confidence 3444444 34889999986644
No 69
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=23.95 E-value=1.3e+02 Score=21.47 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=19.8
Q ss_pred EeCCeeEEeccCCCceEEEEEEEcCCCCeEE
Q 031157 9 IQPSELKFPFELKKQSSCSMQLTNKTDKFVA 39 (165)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~va 39 (165)
+.+.++.++.. .....|+++|+++++|-
T Consensus 8 ~~~~~I~ln~g---r~~~~l~V~NtGDRPIQ 35 (101)
T TIGR00192 8 LAEGDITINEG---RKTVSVKVKNTGDRPIQ 35 (101)
T ss_pred cCCCCEEeCCC---CcEEEEEEEeCCCcceE
Confidence 34456776642 45678999999998873
No 70
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=23.40 E-value=2.2e+02 Score=23.12 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=27.1
Q ss_pred EEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEE
Q 031157 27 SMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTV 69 (165)
Q Consensus 27 ~l~L~N~s~~~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~I 69 (165)
.|+|.|+|...|.|.--.-.... + ...+|.|+++..+.+
T Consensus 154 ~l~v~NpTPyyvtl~~l~~~~~~--~--~~~mi~P~s~~~~~~ 192 (233)
T PRK15246 154 TIRIVNPTSWYMSLTLTMDNKKS--I--GDIMVAPKTALDVPL 192 (233)
T ss_pred EEEEECCCCcEEEEEeEEECCcc--c--CcceECCCCccEEEc
Confidence 49999999999988632222222 2 246899999888864
No 71
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=23.14 E-value=1.2e+02 Score=21.67 Aligned_cols=28 Identities=11% Similarity=0.319 Sum_probs=17.3
Q ss_pred EeCCeeEEeccCCCceEEEEEEEcCCCCeEE
Q 031157 9 IQPSELKFPFELKKQSSCSMQLTNKTDKFVA 39 (165)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~va 39 (165)
+.+.+|..+. ......|+++|+++++|-
T Consensus 7 ~~~~~I~lN~---gr~~~~l~V~N~GDRPIQ 34 (100)
T PF00699_consen 7 LADGDIELNA---GRERITLEVTNTGDRPIQ 34 (100)
T ss_dssp --SSEEETTT---TSEEEEEEEEE-SSS-EE
T ss_pred eCCCcEEecC---CCcEEEEEEEeCCCcceE
Confidence 4455666654 246778999999999874
No 72
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=22.89 E-value=1.1e+02 Score=19.17 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=12.0
Q ss_pred eEEEEEEEcCCCCeEEEEE
Q 031157 24 SSCSMQLTNKTDKFVAFKV 42 (165)
Q Consensus 24 ~~~~l~L~N~s~~~vaFKV 42 (165)
....-++...+...||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 3333445555568999996
No 73
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=21.73 E-value=1.5e+02 Score=25.85 Aligned_cols=70 Identities=24% Similarity=0.396 Sum_probs=39.9
Q ss_pred CCCCCc-EEEeCC-eeEEeccCCCceEEEEEEEcCCCCeEEEEEEeCCC-----CcE----EEeC------Cce-EeCCC
Q 031157 1 MSTGDL-VNIQPS-ELKFPFELKKQSSCSMQLTNKTDKFVAFKVKTTNP-----KKY----CVRP------NTG-IILPR 62 (165)
Q Consensus 1 m~~~~l-L~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p-----~~Y----~VkP------~~G-vI~Pg 62 (165)
|+++.+ |.+.=. ||.+.++ .+..+++++|.|++.|- |||.... -.| ..+| .-| -+.||
T Consensus 190 mS~~~lhLevsLDkEiYyHGE---~isvnV~V~NNsnKtVK-kIK~~V~Q~adi~Lfs~aqy~~~VA~~E~~eGc~v~Pg 265 (402)
T KOG3865|consen 190 MSDGPLHLEVSLDKEIYYHGE---PISVNVHVTNNSNKTVK-KIKISVRQVADICLFSTAQYKKPVAMEETDEGCPVAPG 265 (402)
T ss_pred cCCCceEEEEEecchheecCC---ceeEEEEEecCCcceee-eeEEEeEeeceEEEEecccccceeeeeecccCCccCCC
Confidence 444322 333334 5777765 68899999999986652 4443211 111 1112 222 47788
Q ss_pred CeEEEEEEeccc
Q 031157 63 TSCAVTVTMQAQ 74 (165)
Q Consensus 63 ~s~~I~Itl~~~ 74 (165)
.+..=..++.|.
T Consensus 266 stl~Kvf~l~Pl 277 (402)
T KOG3865|consen 266 STLSKVFTLTPL 277 (402)
T ss_pred CeeeeeEEechh
Confidence 887777777664
No 74
>PF04797 Herpes_ORF11: Herpesvirus dUTPase protein; InterPro: IPR006882 This family of proteins are found in Herpesvirus. This family includes proteins called ORF10 and ORF11 amongst others.
Probab=21.58 E-value=5.2e+02 Score=22.39 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=38.8
Q ss_pred cEEEeCC-eeEEeccCCCceEEEEEEEc------CCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEE
Q 031157 6 LVNIQPS-ELKFPFELKKQSSCSMQLTN------KTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVT 70 (165)
Q Consensus 6 lL~i~P~-eL~F~~~~~~~~~~~l~L~N------~s~~~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~It 70 (165)
.+.|+|. +.+.+.-. ...|++.| .+.....|=.-.+....|.++| .+..|++++.|.|.
T Consensus 264 v~~iY~~~~~~IpP~e----s~~v~~~~~y~~~~~~~~~~~~I~~~~~~~~~~i~p--~~W~P~~~~~ltv~ 329 (379)
T PF04797_consen 264 VPPIYPGPEKTIPPGE----STKVKYNNMYEQGNPSKITAFFICGLNDNSDFVISP--CEWLPGSPLQLTVH 329 (379)
T ss_pred eeeEeCCCceEECCCC----EEEEEEccEEEecCCCccceEEEEcCCCCceEEEee--eEECCCCceEEEEE
Confidence 5667776 56655432 33344443 2333333455567788999999 78999999999885
No 75
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=21.48 E-value=2.7e+02 Score=24.45 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=32.5
Q ss_pred EEEEEEEcCCCCeEEEEEEeCCCCcEEEeCCceEeCCCCeEEEEEEecccc
Q 031157 25 SCSMQLTNKTDKFVAFKVKTTNPKKYCVRPNTGIILPRTSCAVTVTMQAQK 75 (165)
Q Consensus 25 ~~~l~L~N~s~~~vaFKVKTT~p~~Y~VkP~~GvI~Pg~s~~I~Itl~~~~ 75 (165)
...+.|+|.+..+.-|-+--. . +|.-....|.||.+..+.+.|.++.
T Consensus 52 ~~~f~V~N~~~~~~Efe~~~~--~--~vv~e~EnIaPG~s~~l~~~L~pGt 98 (375)
T PRK10378 52 KTQFIIQNHSQKALEWEILKG--V--MVVEERENIAPGFSQKMTANLQPGE 98 (375)
T ss_pred CEEEEEEeCCCCcceEEeecc--c--cccccccccCCCCceEEEEecCCce
Confidence 356777888777777765421 1 3334467899999988889887764
No 76
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=21.00 E-value=2.2e+02 Score=20.36 Aligned_cols=28 Identities=7% Similarity=0.343 Sum_probs=20.1
Q ss_pred EeCCeeEEeccCCCceEEEEEEEcCCCCeEE
Q 031157 9 IQPSELKFPFELKKQSSCSMQLTNKTDKFVA 39 (165)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~va 39 (165)
+.+.++.++.- .....|+++|+++++|-
T Consensus 8 ~~~~~I~lN~g---r~~~~l~V~NtGDRpIQ 35 (101)
T cd00407 8 LKEGDIELNAG---REAVTLKVKNTGDRPIQ 35 (101)
T ss_pred eCCCCeEeCCC---CCEEEEEEEeCCCcceE
Confidence 33446777653 45678999999998874
No 77
>PRK13202 ureB urease subunit beta; Reviewed
Probab=20.05 E-value=2.2e+02 Score=20.40 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=20.0
Q ss_pred EeCCeeEEeccCCCceEEEEEEEcCCCCeEE
Q 031157 9 IQPSELKFPFELKKQSSCSMQLTNKTDKFVA 39 (165)
Q Consensus 9 i~P~eL~F~~~~~~~~~~~l~L~N~s~~~va 39 (165)
+.+.++.++.- +.....|+++|+++++|-
T Consensus 8 ~~~~~I~ln~g--rr~~~~l~V~NtGDRPIQ 36 (104)
T PRK13202 8 YGSGDIEMNAA--ALSRLQMRIINAGDRPVQ 36 (104)
T ss_pred cCCCCEEeCCC--CCceEEEEEEeCCCCceE
Confidence 34456776642 235678999999999873
Done!