BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031158
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPM 158
+GT+ +G+D +I IEKR+A T IP+
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTMIPL 103
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 66
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPM 158
+GT+ +G+D +I IEKR+A T IP+
Sbjct: 67 TGTWFAKGEDSVISKIEKRVAQVTMIPL 94
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 8 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 67
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPM 158
+GT+ +G+D +I IEKR+A T IP+
Sbjct: 68 TGTWFAKGEDSVISKIEKRVAQVTMIPL 95
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 66/88 (75%), Gaps = 3/88 (3%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P VKS+VVD+++G+S DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPM 158
+GT+ +G+D +I IEKR+A T IP+
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTXIPL 103
>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
pdb|1VL7|B Chain B, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
Length = 157
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 46 DDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIV 80
DD++ N + + RR +F+ +++ E + ++W ++V
Sbjct: 85 DDEAKTNQIFARRRLSFDCTATLIERESQKWNQVV 119
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 26.2 bits (56), Expect = 8.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 107 PYMVKSTVVDSKT--GQSKDSRVRTSSGTFLKRGQDRI 142
P +++ T+ D K GQSKD R +GT ++ G D +
Sbjct: 41 PSVLQYTMTDGKVMYGQSKDVRTVEINGTNIELGDDDV 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,333,601
Number of Sequences: 62578
Number of extensions: 149469
Number of successful extensions: 250
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 6
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)