BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031158
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans
GN=phy-2 PE=1 SV=1
Length = 539
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
EI+ ++P A ++ N + +E E + +LA P + ++TV +SKTG+ + + R S +LK
Sbjct: 319 EILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKG 378
Query: 138 GQDRIIRGIEKRIADFT 154
D +I + +RI DFT
Sbjct: 379 DLDPVIDRVNRRIEDFT 395
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1
PE=2 SV=2
Length = 534
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++TV D +TG+ ++ R S +L +D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPV 393
Query: 143 IRGIEKRIADFT 154
+ I RI D T
Sbjct: 394 VSRINMRIQDLT 405
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2
SV=1
Length = 544
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E++ EP +YH+F+S AE + + LA+P++ +S V + + R+ S+ +LK
Sbjct: 340 EVIHLEPYVVLYHDFVSDAEAQTIRGLAEPWLQRSVVASGEKQLPVEYRISKSA--WLKD 397
Query: 138 GQDRIIRGIEKRIADFTFI----PMGEYLK 163
D ++ ++ RIA T + P EYL+
Sbjct: 398 TVDPVLVTLDHRIAALTGLDVQPPYAEYLQ 427
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2
SV=2
Length = 534
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L +D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPV 393
Query: 143 IRGIEKRIADFT 154
+ I RI D T
Sbjct: 394 VSRINMRIQDLT 405
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans
GN=dpy-18 PE=1 SV=2
Length = 559
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
EI + P A ++ + +S E + +LAKP + ++TV DS TG+ + R S +LK
Sbjct: 322 EIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLKE 381
Query: 138 GQDRIIRGIEKRIADFTFIPM 158
+ ++ + KRI T + M
Sbjct: 382 WEGDVVETVNKRIGYMTNLEM 402
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1
SV=1
Length = 534
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L ++ +
Sbjct: 334 KPRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRGIEKRIADFT 154
+ I RI D T
Sbjct: 394 VSRINMRIQDLT 405
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2
SV=1
Length = 534
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L ++ +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRGIEKRIADFT 154
+ I RI D T
Sbjct: 394 VSRINMRIQDLT 405
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1
SV=2
Length = 534
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L ++ +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRGIEKRIADFT 154
+ I RI D T
Sbjct: 394 VSRINMRIQDLT 405
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3
PE=2 SV=1
Length = 544
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E++ P +YH+F+S E + + +LA+P++ +S V + + R+ S+ +LK
Sbjct: 340 EVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVASGEKQLQVEYRISKSA--WLKD 397
Query: 138 GQDRIIRGIEKRIADFTFI----PMGEYLK 163
D ++ +++RIA T + P EYL+
Sbjct: 398 TVDPVLVTLDRRIAALTGLDIQPPYAEYLQ 427
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1
SV=1
Length = 544
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E++ EP +YH+F+S +E + + +LA+P++ +S V + + R+ S+ +LK
Sbjct: 340 EVIHLEPYIALYHDFVSDSEAQKIRELAEPWLQRSVVASGEKQLQVEYRISKSA--WLKD 397
Query: 138 GQDRIIRGIEKRIADFTFI----PMGEYLK 163
D + + RIA T + P EYL+
Sbjct: 398 TVDPKLVTLNHRIAALTGLDVRPPYAEYLQ 427
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2
SV=1
Length = 542
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E+V P +YH+F+S E + + +LA+P++ +S V + + R+ S+ +LK
Sbjct: 338 EVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQRSVVASGEKQLQVEYRISKSA--WLKD 395
Query: 138 GQDRIIRGIEKRIADFTFI----PMGEYLK 163
D ++ ++ RIA T + P EYL+
Sbjct: 396 TVDPMLVTLDHRIAALTGLDIQPPYAEYLQ 425
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2
SV=1
Length = 534
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII 143
P Y++ +S E E + LAKP + ++TV D KTG + R S ++L+ D ++
Sbjct: 337 PHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 396
Query: 144 RGIEKRIADFT 154
+ +R+ T
Sbjct: 397 AKVNQRMQQIT 407
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1
SV=1
Length = 535
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII 143
P Y++ +S E E + ++AKP + ++TV D KTG + R S ++L+ D ++
Sbjct: 336 PHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 395
Query: 144 RGIEKRIADFT 154
+ +R+ T
Sbjct: 396 ARVNRRMQHIT 406
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2
SV=1
Length = 537
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII 143
P Y++ +S E E + ++AKP + ++TV D KTG + R S ++L+ D ++
Sbjct: 338 PHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 397
Query: 144 RGIEKRIADFT 154
+ +R+ T
Sbjct: 398 ARVNRRMQHIT 408
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1
SV=1
Length = 516
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII 143
PR + + +S E E + +LAKP + ++TV D +TG+ + R S +L + ++
Sbjct: 317 PRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPVV 376
Query: 144 RGIEKRIADFT 154
I RI D T
Sbjct: 377 SRINTRIQDLT 387
>sp|B7K3F6|DTD_CYAP8 D-tyrosyl-tRNA(Tyr) deacylase OS=Cyanothece sp. (strain PCC 8801)
GN=dtd PE=3 SV=1
Length = 147
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 40 FYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVA-WEPRAFVYHNFLSKAEC 98
+ IG++D+ ++L R+ E R AEE G++W + V + V F +C
Sbjct: 29 LLVGIGNNDTE-SELDWMTRKCLELRLFPAEEGGDRWEKSVQEIQGELLVISQFTLYGDC 87
Query: 99 E-----YLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTF 134
D A P + K T+ D Q KDS ++ +G F
Sbjct: 88 RKGRRPSFSDSASPSIAK-TLYDQFVAQLKDSGLKVETGIF 127
>sp|Q29KK2|SNPF_DROPS Short neuropeptide F OS=Drosophila pseudoobscura pseudoobscura
GN=sNPF PE=3 SV=2
Length = 290
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 19 LVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSF 57
L L M+ T L + G F++PI DD PPN TSF
Sbjct: 21 LNLLMMHQPTNAELSPVVQGEFFLPILPDDHPPNTDTSF 59
>sp|O31646|MANA1_BACSU Mannose-6-phosphate isomerase ManA OS=Bacillus subtilis (strain
168) GN=manA PE=3 SV=1
Length = 315
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 93 LSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQ-DRIIRGIEKRIA 151
L K EC Y+ID K D++ ++ + T ++RG+ D ++R ++ +
Sbjct: 111 LGKTECWYIIDCQK---------DAEIIYGHNATTKEELTTMIERGEWDELLRRVKVKPG 161
Query: 152 DFTFIPMG 159
DF ++P G
Sbjct: 162 DFFYVPSG 169
>sp|A4J103|RPOB_DESRM DNA-directed RNA polymerase subunit beta OS=Desulfotomaculum
reducens (strain MI-1) GN=rpoB PE=3 SV=1
Length = 1145
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 94 SKAEC-EYLIDLAKPYMVKSTVVDSKTGQSKDSRV-------RTSSGTFLKRGQDRII 143
S EC E + A P VK +++ +TG+ K+ V TS GTF+ G +R+I
Sbjct: 75 SVEECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTSKGTFIINGAERVI 132
>sp|Q4WHB7|JHD1_ASPFU JmjC domain-containing histone demethylation protein 1
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=jhd1 PE=3 SV=1
Length = 1418
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 62 FEKRSSIAEEKGEQWTEIVAWEPRAFVYHN--FLSKAECEYLIDLAKPYMVKSTVVDS 117
F + I E GE+ + A +P YHN F S+AE E L DLAK Y++++ ++ S
Sbjct: 792 FHRAYPIYYEFGERENKAPAGDP----YHNSRFYSQAELEGLPDLAK-YLLRTALIAS 844
>sp|P18790|HLYD_AGGAC Leukotoxin secretion protein D OS=Aggregatibacter
actinomycetemcomitans GN=lktD PE=3 SV=1
Length = 477
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 127 VRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMGEYLK 163
+ T+SG F G+ + I+ IE + F+ GEY+K
Sbjct: 83 IATASGKFALSGRSKEIKPIENSLVKHIFVKEGEYVK 119
>sp|B0TC48|RPOB_HELMI DNA-directed RNA polymerase subunit beta OS=Heliobacterium
modesticaldum (strain ATCC 51547 / Ice1) GN=rpoB PE=3
SV=1
Length = 1154
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 94 SKAEC-EYLIDLAKPYMVKSTVVDSKTGQSKDSRV-------RTSSGTFLKRGQDRII 143
S EC E + A P VK +++ +TG+ K+ V T GTF+ G +R+I
Sbjct: 75 SVEECKERDVTFAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTDKGTFIINGAERVI 132
>sp|B9DKV0|RPOB_STACT DNA-directed RNA polymerase subunit beta OS=Staphylococcus carnosus
(strain TM300) GN=rpoB PE=3 SV=1
Length = 1183
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 105 AKPYMVKSTVVDSKTGQSKDSRV-------RTSSGTFLKRGQDRII 143
A P VK +++ +TG+ KD V T +GTF+ G +R+I
Sbjct: 89 AAPLRVKVRLINKETGEVKDQEVFMGDFPLMTDTGTFVINGAERVI 134
>sp|Q250P0|RPOB_DESHY DNA-directed RNA polymerase subunit beta OS=Desulfitobacterium
hafniense (strain Y51) GN=rpoB PE=3 SV=2
Length = 1115
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 97 EC-EYLIDLAKPYMVKSTVVDSKTGQSKDSRV-------RTSSGTFLKRGQDRII 143
EC E + A P VK +++ +TG+ K+ V T+ GTF+ G +R+I
Sbjct: 78 ECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTTKGTFIINGAERVI 132
>sp|B8G1V8|RPOB_DESHD DNA-directed RNA polymerase subunit beta OS=Desulfitobacterium
hafniense (strain DCB-2 / DSM 10664) GN=rpoB PE=3 SV=1
Length = 1115
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 97 EC-EYLIDLAKPYMVKSTVVDSKTGQSKDSRV-------RTSSGTFLKRGQDRII 143
EC E + A P VK +++ +TG+ K+ V T+ GTF+ G +R+I
Sbjct: 78 ECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTTKGTFIINGAERVI 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,941,577
Number of Sequences: 539616
Number of extensions: 2042437
Number of successful extensions: 8131
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 8098
Number of HSP's gapped (non-prelim): 52
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)