Query 031158
Match_columns 164
No_of_seqs 157 out of 745
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 10:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 99.9 6.4E-26 1.4E-30 196.0 11.9 94 71-164 41-134 (310)
2 KOG1591 Prolyl 4-hydroxylase a 99.9 1E-25 2.2E-30 193.2 10.2 156 8-164 10-178 (289)
3 smart00702 P4Hc Prolyl 4-hydro 99.4 7.1E-13 1.5E-17 104.1 8.7 81 84-164 1-85 (178)
4 PRK05467 Fe(II)-dependent oxyg 94.1 0.13 2.8E-06 43.2 5.7 62 86-154 2-64 (226)
5 PF13677 MotB_plug: Membrane M 66.3 14 0.0003 24.5 4.1 23 1-23 1-23 (58)
6 PF03579 SHP: Small hydrophobi 61.6 17 0.00037 24.8 3.9 30 11-40 12-41 (64)
7 PF13532 2OG-FeII_Oxy_2: 2OG-F 47.1 21 0.00045 27.7 3.0 21 86-106 2-22 (194)
8 PRK06666 fliM flagellar motor 43.2 38 0.00083 29.3 4.3 64 90-154 3-67 (337)
9 KOG3959 2-Oxoglutarate- and ir 40.8 17 0.00037 31.5 1.7 62 84-146 72-140 (306)
10 PF12729 4HB_MCP_1: Four helix 36.7 32 0.00069 25.1 2.4 13 30-42 18-30 (181)
11 TIGR01397 fliM_switch flagella 36.0 55 0.0012 28.0 4.1 62 91-154 1-63 (320)
12 PF15330 SIT: SHP2-interacting 35.2 41 0.00088 25.1 2.7 20 23-42 3-22 (107)
13 PF07894 DUF1669: Protein of u 35.0 44 0.00096 29.2 3.3 19 89-107 47-65 (284)
14 PF05546 She9_MDM33: She9 / Md 34.3 47 0.001 27.8 3.3 24 12-35 148-172 (207)
15 KOG3200 Uncharacterized conser 34.3 46 0.001 27.7 3.1 28 79-106 7-34 (224)
16 PF15183 MRAP: Melanocortin-2 30.1 75 0.0016 23.2 3.3 20 17-36 42-61 (90)
17 PF12955 DUF3844: Domain of un 29.3 61 0.0013 24.2 2.8 18 22-39 69-86 (103)
18 PF05721 PhyH: Phytanoyl-CoA d 29.1 66 0.0014 24.1 3.1 21 87-107 7-27 (211)
19 PF07136 DUF1385: Protein of u 28.0 56 0.0012 27.8 2.7 14 4-17 133-146 (236)
20 PF14851 FAM176: FAM176 family 27.9 64 0.0014 25.7 2.9 24 21-44 22-45 (153)
21 PRK13726 conjugal transfer pil 26.0 93 0.002 25.3 3.6 30 11-40 5-34 (188)
22 cd08788 CARD_NOD2_2_CARD15 Cas 25.3 30 0.00065 24.9 0.5 15 89-103 25-39 (81)
23 TIGR01195 oadG_fam sodium pump 25.0 1.2E+02 0.0026 21.4 3.6 23 19-41 11-33 (82)
24 PRK06925 flagellar motor prote 24.9 98 0.0021 25.5 3.6 16 91-106 127-142 (230)
25 COG5393 Predicted membrane pro 24.6 99 0.0021 24.0 3.3 19 18-36 57-75 (131)
26 PF01448 ELM2: ELM2 domain; I 24.5 84 0.0018 20.0 2.5 27 77-108 28-54 (55)
27 PF04277 OAD_gamma: Oxaloaceta 23.9 1.3E+02 0.0029 20.2 3.6 21 20-40 9-29 (79)
28 PRK13254 cytochrome c-type bio 23.9 96 0.0021 24.4 3.2 19 19-37 12-30 (148)
29 KOG3551 Syntrophins (type beta 23.4 57 0.0012 30.3 2.0 27 70-96 471-498 (506)
30 PF03754 DUF313: Domain of unk 23.2 54 0.0012 24.7 1.6 12 90-101 50-61 (114)
31 PF15240 Pro-rich: Proline-ric 22.6 57 0.0012 26.7 1.8 15 31-45 2-16 (179)
32 PF04835 Pox_A9: A9 protein co 21.4 2.5E+02 0.0053 18.7 4.3 21 26-46 30-50 (54)
33 TIGR02223 ftsN cell division p 21.4 63 0.0014 28.2 1.9 7 1-7 1-7 (298)
34 PF07219 HemY_N: HemY protein 21.1 1.7E+02 0.0036 21.2 3.8 16 31-46 32-47 (108)
35 PF08173 YbgT_YccB: Membrane b 20.8 1.9E+02 0.0041 16.7 3.4 20 17-36 4-23 (28)
36 cd05567 PTS_IIB_mannitol PTS_I 20.3 1.2E+02 0.0026 20.9 2.8 21 83-103 65-85 (87)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.93 E-value=6.4e-26 Score=195.95 Aligned_cols=94 Identities=45% Similarity=0.723 Sum_probs=89.2
Q ss_pred ccCCceeEeecCCccEEEEcCCCCHHHHHHHHHHhccCcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHH
Q 031158 71 EKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRI 150 (164)
Q Consensus 71 ~~~p~kvE~LS~dP~I~lyhdfLS~eEce~Li~lAkp~L~rS~V~~~~~g~~~~s~~RTS~~awL~~~~dpvv~rI~~RI 150 (164)
...|.|+|+||++|+|++||||||++||++||++|++++++|+|+++.+|+...+++|||+++|+.+.+||++++|++||
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri 120 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI 120 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999988777777889999999999998899999999999
Q ss_pred HHhhCCCCCCCCCC
Q 031158 151 ADFTFIPMGEYLKF 164 (164)
Q Consensus 151 ad~TGLp~e~~E~F 164 (164)
+++||+|.+++|++
T Consensus 121 a~~t~lp~~~~E~l 134 (310)
T PLN00052 121 AAWTFLPEENAENI 134 (310)
T ss_pred HHHhCCCcccCcce
Confidence 99999999999975
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=99.93 E-value=1e-25 Score=193.17 Aligned_cols=156 Identities=35% Similarity=0.448 Sum_probs=120.7
Q ss_pred cccccchh--hHHHHHHHHHHHHHHHHHHHHhhhhcccc---CCC-CCCCCCcchhhhhhhhcc------cccccccCCc
Q 031158 8 RLQAKKWS--TLTLVLSMLFMLTIVLLMLLAMGIFYIPI---GDD-DSPPNDLTSFRRRAFEKR------SSIAEEKGEQ 75 (164)
Q Consensus 8 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~p~ 75 (164)
+.+.++.. ..+.++.++.....+...+..++.+..+. .+. ....+++.........+. ++ ...++|.
T Consensus 10 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~~-~~~~ap~ 88 (289)
T KOG1591|consen 10 KLGILKSALSLLTEVFSILPESIRALDNLKQLEQLLDKEQEFTVYEQGCRGELPPLTKLTLRRLSCRNRAGP-FLRLAPV 88 (289)
T ss_pred eccchHhhhhhcchhhhcchhhHHHhhhhhhhhhhccccccccchhhhccCccCccchhHhhhhhcccccCc-ceeecch
Confidence 45555533 34666777777777888888889888876 221 112333333333221111 13 3578999
Q ss_pred eeEeecCCccEEEEcCCCCHHHHHHHHHHhccCcccceee-eCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhh
Q 031158 76 WTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVV-DSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFT 154 (164)
Q Consensus 76 kvE~LS~dP~I~lyhdfLS~eEce~Li~lAkp~L~rS~V~-~~~~g~~~~s~~RTS~~awL~~~~dpvv~rI~~RIad~T 154 (164)
|+|++||+|++++||||+|++||++|+++|+|+|++++|. +..+|....+.+|||+++|+..+.++++++|++||+++|
T Consensus 89 k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T 168 (289)
T KOG1591|consen 89 KLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLT 168 (289)
T ss_pred hhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999995 555566677789999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 031158 155 FIPMGEYLKF 164 (164)
Q Consensus 155 GLp~e~~E~F 164 (164)
|+|++++|+|
T Consensus 169 ~l~~e~~E~l 178 (289)
T KOG1591|consen 169 GLPVENGESL 178 (289)
T ss_pred CCCcccCccc
Confidence 9999999986
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.42 E-value=7.1e-13 Score=104.08 Aligned_cols=81 Identities=35% Similarity=0.504 Sum_probs=70.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhccCcccceeeeCCCCCccccceeeeeeeeeCCCC-cHHHHHHHHHHHHhhCCC---CC
Q 031158 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQ-DRIIRGIEKRIADFTFIP---MG 159 (164)
Q Consensus 84 P~I~lyhdfLS~eEce~Li~lAkp~L~rS~V~~~~~g~~~~s~~RTS~~awL~~~~-dpvv~rI~~RIad~TGLp---~e 159 (164)
|.|++||||||++||++|++++++...++.+.++..+....+++|+|+.+|+..++ ++++++|.+||+++++++ ..
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 80 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL 80 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence 89999999999999999999999999999988664433356789999999999875 899999999999999998 66
Q ss_pred CCCCC
Q 031158 160 EYLKF 164 (164)
Q Consensus 160 ~~E~F 164 (164)
+.|.+
T Consensus 81 ~~~~~ 85 (178)
T smart00702 81 SAEDA 85 (178)
T ss_pred cCcce
Confidence 66653
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=94.09 E-value=0.13 Score=43.16 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=40.5
Q ss_pred EEEEcCCCCHHHHHHHHHHhcc-CcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhh
Q 031158 86 AFVYHNFLSKAECEYLIDLAKP-YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFT 154 (164)
Q Consensus 86 I~lyhdfLS~eEce~Li~lAkp-~L~rS~V~~~~~g~~~~s~~RTS~~awL~~~~dpvv~rI~~RIad~T 154 (164)
|+.++||||++||+++++.... ......+ +.+....++|..... . .+++..+.|.+||....
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~----taG~~~~~vKnN~ql--~-~d~~~a~~l~~~i~~~L 64 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRV----TAGAQAAQVKNNQQL--P-EDSPLARELGNLILDAL 64 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCc----CcCccchhccccccc--C-CCCHHHHHHHHHHHHHH
Confidence 6789999999999999998763 3332222 122223456665443 2 34678888888888765
No 5
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=66.31 E-value=14 Score=24.48 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=10.6
Q ss_pred CcccccccccccchhhHHHHHHH
Q 031158 1 MVKLRHSRLQAKKWSTLTLVLSM 23 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (164)
|+|.|..+-.......|.+.++=
T Consensus 1 Makkk~~~~~~~~~~~WlvtyaD 23 (58)
T PF13677_consen 1 MAKKKKKEEEEEGSPRWLVTYAD 23 (58)
T ss_pred CCCCCCCCCCCCCCccHHHHHHH
Confidence 67776533323333344444433
No 6
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=61.61 E-value=17 Score=24.79 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=25.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 031158 11 AKKWSTLTLVLSMLFMLTIVLLMLLAMGIF 40 (164)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (164)
.+-|.-+||++-++.+.+|++++-+..+||
T Consensus 12 skFW~YFtLi~M~lti~~~~Iv~si~~AIL 41 (64)
T PF03579_consen 12 SKFWTYFTLIFMMLTIGFFFIVTSIMAAIL 41 (64)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777899999999999999888888887
No 7
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=47.08 E-value=21 Score=27.70 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=17.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhc
Q 031158 86 AFVYHNFLSKAECEYLIDLAK 106 (164)
Q Consensus 86 I~lyhdfLS~eEce~Li~lAk 106 (164)
+++++|||+++|...|.+...
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~ 22 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELR 22 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHH
Confidence 578999999999999988876
No 8
>PRK06666 fliM flagellar motor switch protein FliM; Validated
Probab=43.20 E-value=38 Score=29.26 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=34.9
Q ss_pred cCCCCHHHHHHHHHHhcc-CcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhh
Q 031158 90 HNFLSKAECEYLIDLAKP-YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFT 154 (164)
Q Consensus 90 hdfLS~eEce~Li~lAkp-~L~rS~V~~~~~g~~~~s~~RTS~~awL~~~~dpvv~rI~~RIad~T 154 (164)
.++||++|++.|.+.... ....+... ..........|.-.+..-+.++.-+.++.|.+|.+...
T Consensus 3 ~~~LSQ~EIdaLL~~~~~g~~~~~~~~-~~~~~~~~~~ydf~~~~~~~~~~l~~L~~i~e~far~~ 67 (337)
T PRK06666 3 DDILSQEEIDALLSGVSDGEVDDEELK-EEGDEKKVRPYDFKRQERFSRERLRSLEIINERFARLL 67 (337)
T ss_pred ccccCHHHHHHHHhccccCCcCccccc-cccccCCcccCCCCCccccccccchHHHHHHHHHHHHH
Confidence 479999999999875432 11111100 00011112234444444455556788888888887653
No 9
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=40.79 E-value=17 Score=31.47 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=37.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhcc---Cccccee----eeCCCCCccccceeeeeeeeeCCCCcHHHHHH
Q 031158 84 PRAFVYHNFLSKAECEYLIDLAKP---YMVKSTV----VDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGI 146 (164)
Q Consensus 84 P~I~lyhdfLS~eEce~Li~lAkp---~L~rS~V----~~~~~g~~~~s~~RTS~~awL~~~~dpvv~rI 146 (164)
|=|.++|||||.+|-..|+++... ....|.- ++.+ -+.+..+.||-.-+-++...+.+++++
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPK-vNFkk~Klkt~~F~G~P~~~~~v~rrm 140 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPK-VNFKKKKLKTDTFVGMPEYADMVLRRM 140 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCc-cchhhhhhccCcccCCchHHHHHHHHh
Confidence 889999999999999999998763 1222211 1111 112334567776666665444444433
No 10
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=36.72 E-value=32 Score=25.10 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=5.6
Q ss_pred HHHHHHHhhhhcc
Q 031158 30 VLLMLLAMGIFYI 42 (164)
Q Consensus 30 ~~~~~~~~~~~~~ 42 (164)
+++++-++|+.++
T Consensus 18 l~~~~~~~~~~~l 30 (181)
T PF12729_consen 18 LLLIVGIVGLYSL 30 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 11
>TIGR01397 fliM_switch flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself.
Probab=36.01 E-value=55 Score=28.01 Aligned_cols=62 Identities=16% Similarity=0.077 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHhccC-cccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhh
Q 031158 91 NFLSKAECEYLIDLAKPY-MVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFT 154 (164)
Q Consensus 91 dfLS~eEce~Li~lAkp~-L~rS~V~~~~~g~~~~s~~RTS~~awL~~~~dpvv~rI~~RIad~T 154 (164)
|+||++|++.|.+..... -..+..... .+ .....|.-....-+..+.-+.++.|.+|.+...
T Consensus 1 ~~Lsq~EIdaLl~~~~~g~~~~~~~~~~-~~-~~v~~ydf~~~~~~s~~~l~~Le~i~e~far~~ 63 (320)
T TIGR01397 1 DILSQDEIDALLGGLSEGDDSDEPSAVE-DE-KKVKPYDFKRPDRVSKEQLRTLEIINERFARLL 63 (320)
T ss_pred CCCCHHHHHHHHhcccCCCccccccccc-cc-CCceecCCCCccccchhhhhHHHHHHHHHHHHH
Confidence 689999999998654321 111100000 01 112223333333445556677888888877543
No 12
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=35.16 E-value=41 Score=25.12 Aligned_cols=20 Identities=30% Similarity=0.482 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 031158 23 MLFMLTIVLLMLLAMGIFYI 42 (164)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~ 42 (164)
++.++++++||++++.|+.-
T Consensus 3 Ll~il~llLll~l~asl~~w 22 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAW 22 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666676666643
No 13
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=35.04 E-value=44 Score=29.19 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=17.1
Q ss_pred EcCCCCHHHHHHHHHHhcc
Q 031158 89 YHNFLSKAECEYLIDLAKP 107 (164)
Q Consensus 89 yhdfLS~eEce~Li~lAkp 107 (164)
..||||+.|+++|.+.++.
T Consensus 47 ~~~FLS~~Ei~~I~~~~~~ 65 (284)
T PF07894_consen 47 ERDFLSSEEIQYILENAED 65 (284)
T ss_pred CCCCCCHHHHHHHHHhccC
Confidence 4799999999999999974
No 14
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=34.30 E-value=47 Score=27.78 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=14.8
Q ss_pred cchhhH-HHHHHHHHHHHHHHHHHH
Q 031158 12 KKWSTL-TLVLSMLFMLTIVLLMLL 35 (164)
Q Consensus 12 ~~~~~~-~~~~~~~~~~~~~~~~~~ 35 (164)
|..|+| |++|..+-++.|+++.++
T Consensus 148 Rr~STwgT~~lmgvNvllFl~~~~~ 172 (207)
T PF05546_consen 148 RRASTWGTWGLMGVNVLLFLVAQLL 172 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666 666666666666666554
No 15
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.29 E-value=46 Score=27.70 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=21.8
Q ss_pred eecCCccEEEEcCCCCHHHHHHHHHHhc
Q 031158 79 IVAWEPRAFVYHNFLSKAECEYLIDLAK 106 (164)
Q Consensus 79 ~LS~dP~I~lyhdfLS~eEce~Li~lAk 106 (164)
++-.-|.++++.|||++||-..+.+-..
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe 34 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIE 34 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHh
Confidence 4456688899999999999887765443
No 16
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=30.06 E-value=75 Score=23.20 Aligned_cols=20 Identities=10% Similarity=0.408 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031158 17 LTLVLSMLFMLTIVLLMLLA 36 (164)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (164)
+-+.|++|+++.|++|+++.
T Consensus 42 FWv~LA~FV~~lF~iL~~ms 61 (90)
T PF15183_consen 42 FWVSLAAFVVFLFLILLYMS 61 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666554
No 17
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=29.33 E-value=61 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 031158 22 SMLFMLTIVLLMLLAMGI 39 (164)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~ 39 (164)
.+|+-++++++++++++|
T Consensus 69 ~L~~~~ti~lv~~~~~~I 86 (103)
T PF12955_consen 69 WLFAGFTIALVVLVAGAI 86 (103)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444555555555544
No 18
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=29.11 E-value=66 Score=24.10 Aligned_cols=21 Identities=33% Similarity=0.290 Sum_probs=17.2
Q ss_pred EEEcCCCCHHHHHHHHHHhcc
Q 031158 87 FVYHNFLSKAECEYLIDLAKP 107 (164)
Q Consensus 87 ~lyhdfLS~eEce~Li~lAkp 107 (164)
+++.||++++||+.|.+....
T Consensus 7 vvi~~~l~~~~~~~l~~~~~~ 27 (211)
T PF05721_consen 7 VVIRNVLSPEEVERLREELDR 27 (211)
T ss_dssp EEETTSS-HHHHHHHHHHHHH
T ss_pred EEECCcCCHHHHHHHHHHHHH
Confidence 578999999999999877764
No 19
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=28.02 E-value=56 Score=27.82 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=10.5
Q ss_pred cccccccccchhhH
Q 031158 4 LRHSRLQAKKWSTL 17 (164)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (164)
.||||.++|=-+++
T Consensus 133 rk~sr~HpRCGTsF 146 (236)
T PF07136_consen 133 RKYSRLHPRCGTSF 146 (236)
T ss_pred HhcCCcCCCcchhH
Confidence 36899999976653
No 20
>PF14851 FAM176: FAM176 family
Probab=27.92 E-value=64 Score=25.71 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc
Q 031158 21 LSMLFMLTIVLLMLLAMGIFYIPI 44 (164)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~ 44 (164)
++++|++++|+-+||.|.++.+-.
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~ri 45 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRI 45 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777777777777777665443
No 21
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=26.02 E-value=93 Score=25.32 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=11.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 031158 11 AKKWSTLTLVLSMLFMLTIVLLMLLAMGIF 40 (164)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (164)
.|+++.--+.+..++|++++.+.+++..++
T Consensus 5 ~~~~~~~~~~~~~~~l~~l~~~~~~~~v~l 34 (188)
T PRK13726 5 ARLSTSRVMAIAFIFLSVLIVLSLSVNVIQ 34 (188)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333333333333444444444443333
No 22
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=25.34 E-value=30 Score=24.90 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=12.5
Q ss_pred EcCCCCHHHHHHHHH
Q 031158 89 YHNFLSKAECEYLID 103 (164)
Q Consensus 89 yhdfLS~eEce~Li~ 103 (164)
=++|+|++||+.+..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 378999999998875
No 23
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=24.99 E-value=1.2e+02 Score=21.40 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 031158 19 LVLSMLFMLTIVLLMLLAMGIFY 41 (164)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~ 41 (164)
.++.|.+.|.|++++.+++.+.+
T Consensus 11 ~v~GM~~VF~fL~lLi~~i~~~~ 33 (82)
T TIGR01195 11 TVLGMGIVFLFLSLLIYAVRGMG 33 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554
No 24
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=24.90 E-value=98 Score=25.50 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=8.8
Q ss_pred CCCCHHHHHHHHHHhc
Q 031158 91 NFLSKAECEYLIDLAK 106 (164)
Q Consensus 91 dfLS~eEce~Li~lAk 106 (164)
.-|+++--..|.++|.
T Consensus 127 a~L~~~~~~~L~~ia~ 142 (230)
T PRK06925 127 ADILKQAEPFLHKIGV 142 (230)
T ss_pred cccCHhHHHHHHHHHH
Confidence 4456665555555554
No 25
>COG5393 Predicted membrane protein [Function unknown]
Probab=24.62 E-value=99 Score=24.01 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031158 18 TLVLSMLFMLTIVLLMLLA 36 (164)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (164)
|+.|++|.++++.+|++.+
T Consensus 57 tl~fa~~~lmsL~vLvi~~ 75 (131)
T COG5393 57 TLLFAAFGLMSLMVLVIWA 75 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444443
No 26
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=24.46 E-value=84 Score=19.96 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=22.8
Q ss_pred eEeecCCccEEEEcCCCCHHHHHHHHHHhccC
Q 031158 77 TEIVAWEPRAFVYHNFLSKAECEYLIDLAKPY 108 (164)
Q Consensus 77 vE~LS~dP~I~lyhdfLS~eEce~Li~lAkp~ 108 (164)
-+++-|+| ++.+++++++..+.+|+..
T Consensus 28 ~e~lvW~P-----~~~~~d~~l~~yl~~A~s~ 54 (55)
T PF01448_consen 28 EEELVWSP-----NNPLSDRKLEEYLKVAKSS 54 (55)
T ss_pred cceEeECC-----CCCCCHHHHHHHHHHHHhc
Confidence 56788999 5899999999999998753
No 27
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=23.90 E-value=1.3e+02 Score=20.24 Aligned_cols=21 Identities=14% Similarity=0.607 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 031158 20 VLSMLFMLTIVLLMLLAMGIF 40 (164)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~ 40 (164)
++.|.+.|.+++++.+++.++
T Consensus 9 i~Gm~iVF~~L~lL~~~i~l~ 29 (79)
T PF04277_consen 9 IIGMGIVFLVLILLILVISLM 29 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 28
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.90 E-value=96 Score=24.37 Aligned_cols=19 Identities=21% Similarity=0.245 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 031158 19 LVLSMLFMLTIVLLMLLAM 37 (164)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (164)
+++.++++..++.|++.+|
T Consensus 12 ~~~~~~~~~~~~~L~~~a~ 30 (148)
T PRK13254 12 ILGALAALGLAVALVLYAL 30 (148)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444555566555
No 29
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=23.45 E-value=57 Score=30.27 Aligned_cols=27 Identities=30% Similarity=0.531 Sum_probs=21.0
Q ss_pred cccCCceeEeecC-CccEEEEcCCCCHH
Q 031158 70 EEKGEQWTEIVAW-EPRAFVYHNFLSKA 96 (164)
Q Consensus 70 ~~~~p~kvE~LS~-dP~I~lyhdfLS~e 96 (164)
+..+.+.+...|. +|-||++|+|||..
T Consensus 471 g~dGEiqLDLhscpKpiVFIlHsfLSAK 498 (506)
T KOG3551|consen 471 GPDGEIQLDLHSCPKPIVFILHSFLSAK 498 (506)
T ss_pred CCCccEEeeeccCCCcEEEEehhhhhhh
Confidence 4666777777654 89999999999864
No 30
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function.
Probab=23.24 E-value=54 Score=24.74 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=11.4
Q ss_pred cCCCCHHHHHHH
Q 031158 90 HNFLSKAECEYL 101 (164)
Q Consensus 90 hdfLS~eEce~L 101 (164)
.||||++|++.|
T Consensus 50 ~dFLt~eE~~~i 61 (114)
T PF03754_consen 50 NDFLTEEEKRII 61 (114)
T ss_pred cccCCHHHHHHH
Confidence 689999999999
No 31
>PF15240 Pro-rich: Proline-rich
Probab=22.64 E-value=57 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=7.1
Q ss_pred HHHHHHhhhhccccC
Q 031158 31 LLMLLAMGIFYIPIG 45 (164)
Q Consensus 31 ~~~~~~~~~~~~~~~ 45 (164)
|||||.+++|.|.++
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 344444555555443
No 32
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=21.42 E-value=2.5e+02 Score=18.74 Aligned_cols=21 Identities=19% Similarity=0.741 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhccccCC
Q 031158 26 MLTIVLLMLLAMGIFYIPIGD 46 (164)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~ 46 (164)
.++.++.++|+++++++.++.
T Consensus 30 vismimylilGi~L~yis~~~ 50 (54)
T PF04835_consen 30 VISMIMYLILGIALIYISSND 50 (54)
T ss_pred HHHHHHHHHHHHHHhhhccCc
Confidence 456677788888888886554
No 33
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=21.38 E-value=63 Score=28.21 Aligned_cols=7 Identities=14% Similarity=0.012 Sum_probs=4.3
Q ss_pred Ccccccc
Q 031158 1 MVKLRHS 7 (164)
Q Consensus 1 ~~~~~~~ 7 (164)
|+...|.
T Consensus 1 Maqrdyv 7 (298)
T TIGR02223 1 MAQRDYV 7 (298)
T ss_pred CCccccc
Confidence 6666664
No 34
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=21.05 E-value=1.7e+02 Score=21.17 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=10.0
Q ss_pred HHHHHHhhhhccccCC
Q 031158 31 LLMLLAMGIFYIPIGD 46 (164)
Q Consensus 31 ~~~~~~~~~~~~~~~~ 46 (164)
++.-+..+++++|...
T Consensus 32 ll~~ll~~~~~~p~~~ 47 (108)
T PF07219_consen 32 LLLRLLRRLLSLPSRV 47 (108)
T ss_pred HHHHHHHHHHhChHHH
Confidence 3444455888888654
No 35
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=20.79 E-value=1.9e+02 Score=16.75 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031158 17 LTLVLSMLFMLTIVLLMLLA 36 (164)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (164)
++-++.+++.++|.++..+.
T Consensus 4 faWilG~~lA~~~~i~~a~w 23 (28)
T PF08173_consen 4 FAWILGVLLACAFGILNAMW 23 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36678888888877766554
No 36
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.34 E-value=1.2e+02 Score=20.86 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.1
Q ss_pred CccEEEEcCCCCHHHHHHHHH
Q 031158 83 EPRAFVYHNFLSKAECEYLID 103 (164)
Q Consensus 83 dP~I~lyhdfLS~eEce~Li~ 103 (164)
+..|+.+.+|++++|++.+++
T Consensus 65 ~~~vi~v~~~l~~~ei~~i~~ 85 (87)
T cd05567 65 QAQHLSVDNFLNTPEYDELIE 85 (87)
T ss_pred CCeEEEEeccCChHHHHHHHH
Confidence 457788999999999999876
Done!