Query 031158
Match_columns 164
No_of_seqs 157 out of 745
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 15:57:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jig_A Prolyl-4 hydroxylase; h 99.8 4.8E-21 1.7E-25 154.9 9.8 95 70-164 6-100 (224)
2 3itq_A Prolyl 4-hydroxylase, a 99.8 7.8E-20 2.7E-24 149.4 6.1 86 73-164 28-113 (216)
3 3dkq_A PKHD-type hydroxylase S 98.1 1E-05 3.4E-10 66.9 7.7 74 77-157 12-86 (243)
4 2hbt_A EGL nine homolog 1; pro 97.3 0.0008 2.7E-08 55.2 8.2 68 84-153 26-104 (247)
5 2iuw_A Alkylated repair protei 85.2 4.2 0.00014 32.6 8.3 71 84-159 40-126 (238)
6 3s57_A Alpha-ketoglutarate-dep 77.1 11 0.00036 29.5 7.9 75 81-160 7-101 (204)
7 3dgp_A RNA polymerase II trans 40.2 19 0.00066 24.6 2.6 22 86-107 23-44 (80)
8 3dom_A RNA polymerase II trans 32.3 29 0.001 25.1 2.6 22 86-107 51-72 (108)
9 2opw_A Phyhd1 protein; double- 21.1 61 0.0021 25.4 2.9 23 87-109 18-40 (291)
10 2rdq_A 1-deoxypentalenic acid 20.0 67 0.0023 25.1 2.9 28 82-110 30-57 (288)
No 1
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=99.84 E-value=4.8e-21 Score=154.87 Aligned_cols=95 Identities=44% Similarity=0.794 Sum_probs=87.8
Q ss_pred cccCCceeEeecCCccEEEEcCCCCHHHHHHHHHHhccCcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHH
Q 031158 70 EEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKR 149 (164)
Q Consensus 70 ~~~~p~kvE~LS~dP~I~lyhdfLS~eEce~Li~lAkp~L~rS~V~~~~~g~~~~s~~RTS~~awL~~~~dpvv~rI~~R 149 (164)
..++|.|+|+||++|+|++||||||++||++||+++++++++|+++++.+|+...+.+|+|+++|+...+++++++|.+|
T Consensus 6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~r 85 (224)
T 2jig_A 6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKR 85 (224)
T ss_dssp -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHH
T ss_pred ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999998766776778899999999998889999999999
Q ss_pred HHHhhCCCCCCCCCC
Q 031158 150 IADFTFIPMGEYLKF 164 (164)
Q Consensus 150 Iad~TGLp~e~~E~F 164 (164)
|++++|+|+.+.|.+
T Consensus 86 i~~~~gl~~~~~e~~ 100 (224)
T 2jig_A 86 VAQVTMIPLENHEGL 100 (224)
T ss_dssp HHHHHTCCGGGBCCC
T ss_pred HHHHhCCCcccccce
Confidence 999999999988864
No 2
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=99.79 E-value=7.8e-20 Score=149.43 Aligned_cols=86 Identities=34% Similarity=0.412 Sum_probs=73.3
Q ss_pred CCceeEeecCCccEEEEcCCCCHHHHHHHHHHhccCcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHH
Q 031158 73 GEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIAD 152 (164)
Q Consensus 73 ~p~kvE~LS~dP~I~lyhdfLS~eEce~Li~lAkp~L~rS~V~~~~~g~~~~s~~RTS~~awL~~~~dpvv~rI~~RIad 152 (164)
..++++++|++|+|++||||||++||++|+++|++++++|+|..+ ...+++|||+++|+.+ ++++++|++||++
T Consensus 28 r~v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~----~~~~~~RtS~~~wl~~--~~~v~~i~~Ri~~ 101 (216)
T 3itq_A 28 REIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS----RDVNDIRTSSGAFLDD--NELTAKIEKRISS 101 (216)
T ss_dssp CEEEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC------------CCCCGGGTTCEECCC--CHHHHHHHHHHHH
T ss_pred ceEEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC----CccCCcEeeeeEEeCC--cHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999998211 3467899999999988 8999999999999
Q ss_pred hhCCCCCCCCCC
Q 031158 153 FTFIPMGEYLKF 164 (164)
Q Consensus 153 ~TGLp~e~~E~F 164 (164)
++|+|++++|.|
T Consensus 102 ~~gl~~~~~E~l 113 (216)
T 3itq_A 102 IMNVPASHGEGL 113 (216)
T ss_dssp HHTSCGGGBCCC
T ss_pred hcCceeccccce
Confidence 999999999875
No 3
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=98.06 E-value=1e-05 Score=66.93 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=53.7
Q ss_pred eEeecCCccEEEEcCCCCHHHHHHHHHHhcc-CcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhhC
Q 031158 77 TEIVAWEPRAFVYHNFLSKAECEYLIDLAKP-YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTF 155 (164)
Q Consensus 77 vE~LS~dP~I~lyhdfLS~eEce~Li~lAkp-~L~rS~V~~~~~g~~~~s~~RTS~~awL~~~~dpvv~rI~~RIad~TG 155 (164)
-|.+..++.+++||||||++||++||++++. .+.++.+ +++.....+| .+.|+.. +++++++|.+||.+++|
T Consensus 12 ~~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~----t~g~~~~~vr--~n~~l~~-d~~~~~~l~~~i~~~l~ 84 (243)
T 3dkq_A 12 HENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQ----TSGAMATTRK--RNQQLDK-DDPVAVALGQQIMDRLL 84 (243)
T ss_dssp --CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECC----CSSBSSCCCE--EEEECCT-TCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCcc----cCCCccccce--eeeEECC-CCHHHHHHHHHHHHHHc
Confidence 4567889999999999999999999999963 3443333 2222223344 4567775 47999999999999987
Q ss_pred CC
Q 031158 156 IP 157 (164)
Q Consensus 156 Lp 157 (164)
..
T Consensus 85 ~~ 86 (243)
T 3dkq_A 85 AH 86 (243)
T ss_dssp TC
T ss_pred cC
Confidence 65
No 4
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=97.30 E-value=0.0008 Score=55.18 Aligned_cols=68 Identities=13% Similarity=0.235 Sum_probs=47.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhcc-----CcccceeeeCCCCCccccceeeeeeeeeCCCCc--H----HHHHHHHHHHH
Q 031158 84 PRAFVYHNFLSKAECEYLIDLAKP-----YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQD--R----IIRGIEKRIAD 152 (164)
Q Consensus 84 P~I~lyhdfLS~eEce~Li~lAkp-----~L~rS~V~~~~~g~~~~s~~RTS~~awL~~~~d--p----vv~rI~~RIad 152 (164)
+-+++++|||+++||+.|++.+.. .++++.+... +......+|++..+|+...+. + +.++|++.+..
T Consensus 26 ~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l~~~ 103 (247)
T 2hbt_A 26 HGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRH 103 (247)
T ss_dssp TSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCSTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccccchhHHHHHHHHHHHHHHH
Confidence 346779999999999999999874 4677777542 233457899999999997542 2 34455544443
Q ss_pred h
Q 031158 153 F 153 (164)
Q Consensus 153 ~ 153 (164)
+
T Consensus 104 l 104 (247)
T 2hbt_A 104 C 104 (247)
T ss_dssp T
T ss_pred H
Confidence 3
No 5
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=85.17 E-value=4.2 Score=32.64 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=42.3
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhc--cCcccceeeeCCCCCccccceeeeeeeeeCC--------------CCcHHHHHHH
Q 031158 84 PRAFVYHNFLSKAECEYLIDLAK--PYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR--------------GQDRIIRGIE 147 (164)
Q Consensus 84 P~I~lyhdfLS~eEce~Li~lAk--p~L~rS~V~~~~~g~~~~s~~RTS~~awL~~--------------~~dpvv~rI~ 147 (164)
|-+.+++|||+++|.+.|.+.-. -..+...... -|+..... |. +||..+ .-.+.+..|.
T Consensus 40 ~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~--~g~~~~~~-R~--~~~~g~~~Y~Ys~~~~~~~p~wp~~l~~l~ 114 (238)
T 2iuw_A 40 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIR--EDITYQQP-RL--TAWYGELPYTYSRITMEPNPHWHPVLRTLK 114 (238)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEES--SSCEEECS-SE--EEEEECCCTTSCHHHHCCBSSCCHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHhCCCccCceec--CCcccccC-Ce--eEEcCCCccccCCcccCCCCCCCHHHHHHH
Confidence 45999999999999999877653 2233322211 12222222 22 234431 1246788899
Q ss_pred HHHHHhhCCCCC
Q 031158 148 KRIADFTFIPMG 159 (164)
Q Consensus 148 ~RIad~TGLp~e 159 (164)
+++++.+|.+.+
T Consensus 115 ~~~~~~~g~~~n 126 (238)
T 2iuw_A 115 NRIEENTGHTFN 126 (238)
T ss_dssp HHHHHHHSCCCC
T ss_pred HHHHHHhCCCCC
Confidence 999998886654
No 6
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=77.15 E-value=11 Score=29.52 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=44.5
Q ss_pred cCCccEEEEcCCCCHHHHHHHHHHh--ccCc---ccceeeeCCCCCccccceeeeeeeeeCCC---------------Cc
Q 031158 81 AWEPRAFVYHNFLSKAECEYLIDLA--KPYM---VKSTVVDSKTGQSKDSRVRTSSGTFLKRG---------------QD 140 (164)
Q Consensus 81 S~dP~I~lyhdfLS~eEce~Li~lA--kp~L---~rS~V~~~~~g~~~~s~~RTS~~awL~~~---------------~d 140 (164)
-.+=..+.|.|||+++|++.|.+.- +... +...+.- -|+.... -|. ++|..+. -.
T Consensus 7 ~~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~--~gk~~~~-pR~--~~wyg~~~~~Y~Ysg~~~~~~pwp 81 (204)
T 3s57_A 7 RAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQV--FGKWHSV-PRK--QATYGDAGLTYTFSGLTLSPKPWI 81 (204)
T ss_dssp EETTEEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEE--TTEEEEC-SSE--EEEEECTTCCEEETTEEECCEECC
T ss_pred eeCCceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEE--CCeEecc-CcE--EEEECCCCCCcccCCCcccCCCCC
Confidence 3344567799999999999886643 3344 2222211 1221111 121 2444432 25
Q ss_pred HHHHHHHHHHHHhhCCCCCC
Q 031158 141 RIIRGIEKRIADFTFIPMGE 160 (164)
Q Consensus 141 pvv~rI~~RIad~TGLp~e~ 160 (164)
+.+..|.+++++.+|.+.+.
T Consensus 82 ~~L~~l~~~~~~~~g~~~n~ 101 (204)
T 3s57_A 82 PVLERIRDHVSGVTGQTFNF 101 (204)
T ss_dssp HHHHHHHHHHHHHHCCCCSE
T ss_pred HHHHHHHHHHHHHhCCCCce
Confidence 79999999999999877653
No 7
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=40.24 E-value=19 Score=24.62 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhcc
Q 031158 86 AFVYHNFLSKAECEYLIDLAKP 107 (164)
Q Consensus 86 I~lyhdfLS~eEce~Li~lAkp 107 (164)
-++|.||.|.+|-+.+.+.|+.
T Consensus 23 g~Ly~~F~s~~efe~~~~yA~e 44 (80)
T 3dgp_A 23 GSLYSDFETSQEYNLLSKYAQD 44 (80)
T ss_dssp EEEEECCSCHHHHHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHH
Confidence 5789999999999999999984
No 8
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=32.28 E-value=29 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhcc
Q 031158 86 AFVYHNFLSKAECEYLIDLAKP 107 (164)
Q Consensus 86 I~lyhdfLS~eEce~Li~lAkp 107 (164)
-++|.||.|.+|-+.+.+.|+.
T Consensus 51 G~LY~dF~s~~efe~v~~yA~e 72 (108)
T 3dom_A 51 GSLYSDFETSQEYNLLSKYAQD 72 (108)
T ss_dssp EEEEECCSCHHHHHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHH
Confidence 5789999999999999999984
No 9
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=21.08 E-value=61 Score=25.45 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEcCCCCHHHHHHHHHHhccCc
Q 031158 87 FVYHNFLSKAECEYLIDLAKPYM 109 (164)
Q Consensus 87 ~lyhdfLS~eEce~Li~lAkp~L 109 (164)
+++.||++++||+.|.+.....+
T Consensus 18 vvl~~~l~~e~v~~l~~~~~~~~ 40 (291)
T 2opw_A 18 LVLEGFLSAEECVAMQQRIGEIV 40 (291)
T ss_dssp EEETTSSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999988776543
No 10
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=19.99 E-value=67 Score=25.11 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=21.2
Q ss_pred CCccEEEEcCCCCHHHHHHHHHHhccCcc
Q 031158 82 WEPRAFVYHNFLSKAECEYLIDLAKPYMV 110 (164)
Q Consensus 82 ~dP~I~lyhdfLS~eEce~Li~lAkp~L~ 110 (164)
.+=++ ++.||++++||+.|.+.....+.
T Consensus 30 ~dGyv-vl~~~l~~e~v~~l~~~~~~~~~ 57 (288)
T 2rdq_A 30 EHGYL-FLRNVLDRDLVKTVAEQMREGLV 57 (288)
T ss_dssp HHSEE-EECSCSCHHHHHHHHHHHHHHHH
T ss_pred hCCEE-EEeCCCCHHHHHHHHHHHHHHHH
Confidence 33344 68999999999999888875443
Done!