Query 031159
Match_columns 164
No_of_seqs 115 out of 1040
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 10:05:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1691 emp24/gp25L/p24 family 100.0 1.5E-34 3.2E-39 209.7 17.4 157 4-164 5-163 (210)
2 KOG1690 emp24/gp25L/p24 family 100.0 3.1E-33 6.7E-38 200.1 16.3 157 6-164 5-168 (215)
3 KOG1692 Putative cargo transpo 100.0 3.8E-33 8.3E-38 198.8 14.3 139 17-164 16-154 (201)
4 KOG1693 emp24/gp25L/p24 family 100.0 1.1E-30 2.3E-35 187.3 14.7 156 1-164 1-160 (209)
5 KOG3287 Membrane trafficking p 99.9 1.2E-25 2.5E-30 163.3 15.6 139 19-164 33-182 (236)
6 PF01105 EMP24_GP25L: emp24/gp 99.9 3.4E-28 7.3E-33 177.1 0.0 137 21-164 1-141 (183)
7 PF01835 A2M_N: MG2 domain; I 95.5 0.37 8E-06 31.2 10.1 68 39-106 12-87 (99)
8 PHA03376 BARF1; Provisional 92.8 2.2 4.7E-05 31.7 9.5 96 1-107 1-111 (221)
9 PF04151 PPC: Bacterial pre-pe 92.1 0.93 2E-05 27.4 6.1 60 33-102 4-68 (70)
10 PF13473 Cupredoxin_1: Cupredo 91.8 1.1 2.5E-05 29.3 6.6 22 84-105 74-96 (104)
11 smart00557 IG_FLMN Filamin-typ 91.6 2.4 5.2E-05 27.2 8.9 45 62-106 31-78 (93)
12 PF13860 FlgD_ig: FlgD Ig-like 90.2 2.1 4.5E-05 26.8 6.5 43 42-92 12-56 (81)
13 PF11589 DUF3244: Domain of un 88.2 2.6 5.6E-05 27.8 6.1 46 62-107 47-96 (106)
14 PF13897 GOLD_2: Golgi-dynamic 87.6 0.78 1.7E-05 31.8 3.3 30 89-119 104-133 (136)
15 PF10572 UPF0556: Uncharacteri 87.5 8.4 0.00018 27.4 10.6 53 1-54 1-58 (158)
16 PF15417 DUF4624: Domain of un 85.8 8.1 0.00018 26.0 7.2 78 29-121 37-122 (132)
17 PF05738 Cna_B: Cna protein B- 84.9 2.3 5E-05 25.4 4.2 44 64-107 3-48 (70)
18 PF00630 Filamin: Filamin/ABP2 83.4 9.3 0.0002 24.4 7.1 43 63-105 42-91 (101)
19 PRK06655 flgD flagellar basal 83.1 7.9 0.00017 29.4 7.2 55 43-105 114-179 (225)
20 PRK14081 triple tyrosine motif 82.5 30 0.00065 30.6 11.2 58 62-120 415-476 (667)
21 PF09315 DUF1973: Domain of un 82.1 17 0.00037 26.5 10.3 45 64-108 42-90 (179)
22 TIGR03096 nitroso_cyanin nitro 81.6 13 0.00027 26.0 7.2 80 20-101 25-118 (135)
23 PF13620 CarboxypepD_reg: Carb 81.3 2.2 4.7E-05 26.2 3.1 44 64-107 16-59 (82)
24 PRK12812 flgD flagellar basal 81.1 23 0.0005 27.5 9.1 57 42-106 128-195 (259)
25 PF12690 BsuPI: Intracellular 81.0 8.6 0.00019 24.2 5.7 21 61-81 22-42 (82)
26 PRK12813 flgD flagellar basal 80.7 10 0.00022 28.7 7.0 59 41-107 110-176 (223)
27 PF13956 Ibs_toxin: Toxin Ibs, 80.0 1.1 2.4E-05 19.8 1.0 13 1-13 1-13 (19)
28 PF07495 Y_Y_Y: Y_Y_Y domain; 78.9 11 0.00023 22.1 7.8 57 61-119 6-65 (66)
29 PRK05842 flgD flagellar basal 76.7 18 0.00039 28.7 7.4 59 43-105 150-221 (295)
30 PRK12634 flgD flagellar basal 76.4 27 0.00059 26.4 8.2 45 62-106 121-176 (221)
31 KOG3285 Spindle assembly check 74.5 5.6 0.00012 29.0 3.8 55 97-152 82-136 (203)
32 PRK12633 flgD flagellar basal 73.4 38 0.00082 25.8 8.7 45 62-106 128-183 (230)
33 PF14054 DUF4249: Domain of un 70.6 37 0.0008 26.2 8.1 95 8-104 3-108 (298)
34 PF14524 Wzt_C: Wzt C-terminal 70.5 15 0.00033 24.7 5.3 68 29-105 24-93 (142)
35 PRK09619 flgD flagellar basal 70.3 25 0.00054 26.5 6.7 57 42-106 110-173 (218)
36 PF05753 TRAP_beta: Translocon 70.0 40 0.00087 24.6 9.7 31 35-71 31-61 (181)
37 PRK02710 plastocyanin; Provisi 68.7 32 0.0007 23.0 8.0 19 84-102 86-105 (119)
38 PF10528 PA14_2: GLEYA domain; 67.8 15 0.00032 24.7 4.5 48 27-80 55-102 (113)
39 PF08234 Spindle_Spc25: Chromo 64.9 20 0.00043 22.0 4.4 53 93-148 4-56 (74)
40 KOG0518 Actin-binding cytoskel 64.7 45 0.00098 31.0 8.0 47 62-108 882-931 (1113)
41 PRK14081 triple tyrosine motif 64.2 1E+02 0.0022 27.5 9.9 56 64-119 224-283 (667)
42 PRK10378 inactive ferrous ion 57.8 54 0.0012 26.9 6.9 67 21-101 31-103 (375)
43 COG4856 Uncharacterized protei 56.1 1.2E+02 0.0025 25.1 8.5 41 62-105 69-113 (403)
44 PF01166 TSC22: TSC-22/dip/bun 56.0 32 0.0007 20.2 3.9 32 132-163 11-42 (59)
45 PF04728 LPP: Lipoprotein leuc 53.3 22 0.00048 20.8 2.9 27 136-162 4-30 (56)
46 COG5510 Predicted small secret 48.3 13 0.00028 20.5 1.3 14 1-14 1-14 (44)
47 TIGR02962 hdxy_isourate hydrox 48.0 83 0.0018 21.1 6.1 15 94-108 56-70 (112)
48 PF05388 Carbpep_Y_N: Carboxyp 42.4 11 0.00024 25.3 0.6 23 2-24 1-23 (113)
49 COG2372 CopC Uncharacterized p 42.3 1.1E+02 0.0024 21.0 8.4 56 64-119 61-124 (127)
50 KOG0518 Actin-binding cytoskel 41.3 1.2E+02 0.0027 28.3 7.0 40 64-103 391-434 (1113)
51 PF11912 DUF3430: Protein of u 40.6 30 0.00064 25.4 2.7 35 2-36 1-37 (212)
52 PRK12618 flgA flagellar basal 40.4 24 0.00052 24.7 2.1 11 1-11 1-11 (141)
53 PF09116 gp45-slide_C: gp45 sl 39.9 73 0.0016 21.5 4.2 40 67-106 26-73 (112)
54 PF04887 Pox_M2: Poxvirus M2 p 39.1 41 0.0009 24.7 3.1 50 16-76 14-63 (197)
55 PRK15396 murein lipoprotein; P 38.4 53 0.0012 20.6 3.2 31 132-162 22-52 (78)
56 PF03100 CcmE: CcmE; InterPro 38.1 32 0.00069 23.6 2.4 55 18-75 29-83 (131)
57 PF13715 DUF4480: Domain of un 37.1 99 0.0022 18.9 8.9 48 64-119 17-64 (88)
58 PF04508 Pox_A_type_inc: Viral 37.0 52 0.0011 15.6 2.3 17 137-153 3-19 (23)
59 COG3937 Uncharacterized conser 35.5 53 0.0011 21.9 2.9 28 131-158 79-106 (108)
60 PRK10190 L,D-transpeptidase; P 35.3 45 0.00098 26.6 3.1 36 1-36 1-36 (310)
61 PF02927 CelD_N: N-terminal ig 35.1 1.2E+02 0.0026 19.2 4.7 42 64-105 35-87 (91)
62 KOG2096 WD40 repeat protein [G 34.3 75 0.0016 25.8 4.1 23 86-108 270-292 (420)
63 TIGR03503 conserved hypothetic 33.7 2.7E+02 0.0059 22.9 9.2 45 60-104 239-286 (374)
64 PRK10301 hypothetical protein; 33.7 1.5E+02 0.0033 20.1 7.2 43 64-106 60-109 (124)
65 PF06059 DUF930: Domain of Unk 33.4 79 0.0017 20.9 3.5 30 94-124 59-88 (101)
66 PHA02932 hypothetical protein; 32.9 78 0.0017 23.5 3.7 51 21-83 42-95 (221)
67 PF10794 DUF2606: Protein of u 32.9 1.6E+02 0.0035 20.1 7.1 26 82-107 84-109 (131)
68 COG4062 MtrB Tetrahydromethano 32.8 50 0.0011 21.7 2.4 24 135-158 31-54 (108)
69 PF14257 DUF4349: Domain of un 32.7 40 0.00087 25.8 2.4 29 136-164 163-191 (262)
70 PF08842 Mfa2: Fimbrillin-A as 32.5 58 0.0013 24.6 3.3 43 63-105 29-77 (283)
71 PRK09810 entericidin A; Provis 31.7 50 0.0011 18.0 2.0 10 1-10 1-10 (41)
72 PF13314 DUF4083: Domain of un 31.5 41 0.00089 19.8 1.7 22 131-152 35-56 (58)
73 PRK13211 N-acetylglucosamine-b 31.5 3.3E+02 0.0072 23.3 10.2 58 62-119 340-404 (478)
74 PRK13159 cytochrome c-type bio 31.4 1.8E+02 0.004 20.7 5.4 57 17-76 29-85 (155)
75 PF08139 LPAM_1: Prokaryotic m 31.3 48 0.001 16.0 1.7 14 2-15 7-20 (25)
76 PF05404 TRAP-delta: Transloco 31.0 2.1E+02 0.0045 20.8 8.7 13 95-107 93-105 (167)
77 PRK10894 lipopolysaccharide tr 30.8 1.4E+02 0.003 21.6 4.8 29 24-54 32-60 (180)
78 PF14109 GldH_lipo: GldH lipop 30.5 1.8E+02 0.0039 19.9 5.6 45 63-107 68-117 (131)
79 TIGR01837 PHA_granule_1 poly(h 30.5 28 0.00061 23.5 1.1 25 131-155 92-116 (118)
80 PF10805 DUF2730: Protein of u 30.4 52 0.0011 21.7 2.4 29 132-160 32-60 (106)
81 TIGR02542 B_forsyth_147 Bacter 30.4 31 0.00066 23.5 1.2 14 94-107 115-128 (145)
82 PRK03641 hypothetical protein; 29.9 57 0.0012 24.6 2.8 15 15-29 14-28 (220)
83 PF07210 DUF1416: Protein of u 29.5 1.6E+02 0.0034 18.8 6.5 63 37-107 3-65 (85)
84 cd09011 Glo_EDI_BRP_like_23 Th 29.2 49 0.0011 21.4 2.2 14 65-78 102-115 (120)
85 PRK00965 tetrahydromethanopter 29.0 62 0.0013 21.2 2.4 42 115-157 12-53 (96)
86 PF12904 Collagen_bind_2: Puta 28.9 99 0.0021 20.0 3.4 9 64-72 48-56 (93)
87 PRK10351 holo-(acyl carrier pr 28.8 1.7E+02 0.0037 21.5 5.0 54 70-133 45-98 (187)
88 PF08896 DUF1842: Domain of un 28.7 1.9E+02 0.0041 19.5 7.8 60 43-105 3-65 (114)
89 PF02083 Urotensin_II: Urotens 28.2 23 0.00049 13.9 0.2 8 29-36 2-9 (12)
90 PF14155 DUF4307: Domain of un 28.1 1.9E+02 0.004 19.3 7.2 42 34-80 39-80 (112)
91 PF10670 DUF4198: Domain of un 27.4 2.4E+02 0.0052 20.3 6.0 18 84-101 191-208 (215)
92 COG3017 LolB Outer membrane li 27.4 2.7E+02 0.0059 20.9 8.5 25 83-108 66-90 (206)
93 cd05860 Ig4_SCFR Fourth immuno 27.2 1.1E+02 0.0023 20.2 3.4 25 93-121 75-99 (101)
94 PF13464 DUF4115: Domain of un 27.2 1.5E+02 0.0033 17.9 5.9 41 64-106 8-48 (77)
95 PF08194 DIM: DIM protein; In 26.9 86 0.0019 16.6 2.3 26 3-28 3-30 (36)
96 PF05440 MtrB: Tetrahydrometha 26.9 73 0.0016 20.9 2.5 23 135-157 30-52 (97)
97 cd08356 Glo_EDI_BRP_like_17 Th 26.9 55 0.0012 21.2 2.1 15 64-78 96-110 (113)
98 PHA02102 hypothetical protein 26.5 55 0.0012 19.6 1.7 27 136-162 6-32 (72)
99 KOG4797 Transcriptional regula 26.0 87 0.0019 21.0 2.7 32 132-163 64-95 (123)
100 cd03447 FAS_MaoC FAS_MaoC, the 25.7 2.1E+02 0.0046 19.2 5.2 41 34-79 77-118 (126)
101 PF13605 DUF4141: Domain of un 25.4 1.2E+02 0.0025 17.7 2.9 17 14-30 13-29 (55)
102 KOG0285 Pleiotropic regulator 24.7 1.5E+02 0.0031 24.6 4.3 50 68-117 374-435 (460)
103 PHA02665 hypothetical protein; 24.5 51 0.0011 24.9 1.6 30 25-54 24-53 (322)
104 PF14283 DUF4366: Domain of un 24.2 1.3E+02 0.0028 22.7 3.8 18 15-32 171-188 (218)
105 PF07437 YfaZ: YfaZ precursor; 24.1 1E+02 0.0022 22.5 3.1 31 1-31 1-31 (180)
106 cd05864 Ig2_VEGFR-2 Second imm 24.0 1.4E+02 0.0031 17.6 3.4 25 93-119 44-68 (70)
107 PF11325 DUF3127: Domain of un 23.9 2E+02 0.0044 18.2 4.6 31 90-120 26-66 (84)
108 PF08826 DMPK_coil: DMPK coile 23.8 1.1E+02 0.0024 18.2 2.7 33 132-164 29-61 (61)
109 PF10779 XhlA: Haemolysin XhlA 23.7 1.6E+02 0.0034 17.8 3.5 26 137-162 29-54 (71)
110 PF07888 CALCOCO1: Calcium bin 23.6 5E+02 0.011 22.7 8.0 77 23-107 14-99 (546)
111 cd08350 BLMT_like BLMT, a bleo 23.2 74 0.0016 20.6 2.1 15 64-78 101-115 (120)
112 PF05506 DUF756: Domain of unk 23.1 2E+02 0.0043 17.9 6.4 18 33-50 48-65 (89)
113 PF15240 Pro-rich: Proline-ric 23.1 41 0.00089 24.6 0.9 6 17-22 14-19 (179)
114 PF03512 Glyco_hydro_52: Glyco 22.5 57 0.0012 27.1 1.6 33 16-48 212-250 (428)
115 PF13584 BatD: Oxygen toleranc 22.5 4.4E+02 0.0096 22.0 7.1 62 37-100 23-89 (484)
116 cd07235 MRD Mitomycin C resist 22.2 72 0.0016 20.5 1.9 13 65-77 106-118 (122)
117 KOG4571 Activating transcripti 22.2 1.1E+02 0.0023 24.3 3.0 29 135-163 255-283 (294)
118 cd08344 MhqB_like_N N-terminal 22.0 74 0.0016 20.3 1.9 13 66-78 93-105 (112)
119 PRK04517 hypothetical protein; 22.0 95 0.0021 23.3 2.7 15 15-29 15-30 (216)
120 PF13600 DUF4140: N-terminal d 22.0 2.3E+02 0.0049 18.2 8.0 28 134-161 69-96 (104)
121 cd04976 Ig2_VEGFR Second immun 21.9 1.2E+02 0.0025 17.9 2.7 25 93-119 45-69 (71)
122 TIGR02186 alph_Pro_TM conserve 21.9 3.9E+02 0.0085 20.9 8.3 25 62-86 68-92 (261)
123 PF02950 Conotoxin: Conotoxin; 21.9 30 0.00065 20.9 0.0 14 2-15 1-14 (75)
124 cd05894 Ig_C5_MyBP-C C5 immuno 21.9 1.3E+02 0.0027 18.6 2.9 16 93-108 62-77 (86)
125 PF03061 4HBT: Thioesterase su 21.7 1.8E+02 0.0039 16.8 3.9 39 34-77 40-78 (79)
126 PRK10386 curli assembly protei 21.2 90 0.0019 21.6 2.2 23 139-161 98-120 (130)
127 PF06291 Lambda_Bor: Bor prote 21.0 1.6E+02 0.0036 19.2 3.3 23 9-31 7-29 (97)
128 cd07261 Glo_EDI_BRP_like_11 Th 21.0 87 0.0019 19.8 2.1 13 65-77 98-110 (114)
129 PRK09413 IS2 repressor TnpA; R 21.0 1.6E+02 0.0035 19.6 3.5 26 137-162 73-98 (121)
130 cd00028 B_lectin Bulb-type man 20.9 2.4E+02 0.0052 18.4 4.3 13 67-79 67-79 (116)
131 PF14965 BRI3BP: Negative regu 20.9 1.2E+02 0.0025 22.2 2.8 22 138-159 155-176 (177)
132 PRK10905 cell division protein 20.7 71 0.0015 25.7 1.8 14 1-14 1-14 (328)
133 PLN00115 pollen allergen group 20.4 1.8E+02 0.0038 19.8 3.5 30 1-30 1-34 (118)
134 PF08946 Osmo_CC: Osmosensory 20.2 1.8E+02 0.0039 16.2 3.3 25 134-158 11-35 (46)
135 PF14977 FAM194: FAM194 protei 20.2 3.9E+02 0.0084 20.1 10.4 19 32-51 49-67 (208)
136 PF11974 MG1: Alpha-2-macroglo 20.1 2.5E+02 0.0055 18.0 6.2 38 64-101 30-68 (97)
No 1
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=209.68 Aligned_cols=157 Identities=51% Similarity=0.882 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHhhceeeEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeecc
Q 031159 4 LTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRV 83 (164)
Q Consensus 4 ~~~~l~~~l~ll~~~~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~ 83 (164)
.+.++++++++++..+.|+.|++|+++++|+.|++.++..+.|.|.+.++.-+ ....+.+.|+||.|+.+++.++.
T Consensus 5 ~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~----~~~~~~~~Vts~~G~~~~~~env 80 (210)
T KOG1691|consen 5 CLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGD----HSHKLSVKVTSPYGNNLHSKENV 80 (210)
T ss_pred hHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCC----ccceEEEEEEcCCCceeehhhcc
Confidence 34455555566678999999999999999999999999999999999876411 01589999999999999999999
Q ss_pred ccceEEEEeeccCceeEEEEecc--CCCCceEEEEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHh
Q 031159 84 DSGQFAFTAAEAGDYMACFWAVD--HSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYL 161 (164)
Q Consensus 84 ~~g~~~f~~~~~G~y~~Cf~n~~--~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l~~I~~eq~y~ 161 (164)
++|+|+|++.+.|.|.+||.+.. ..+.....|.|||++|.+++||+++||+++++|+|.++++|++.+.+|+++..|+
T Consensus 81 ~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YL 160 (210)
T KOG1691|consen 81 TKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYL 160 (210)
T ss_pred ccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999943 3234568999999999999999999999999999999999999999999999999
Q ss_pred hhC
Q 031159 162 RER 164 (164)
Q Consensus 162 r~R 164 (164)
|.|
T Consensus 161 r~R 163 (210)
T KOG1691|consen 161 RER 163 (210)
T ss_pred HHH
Confidence 987
No 2
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-33 Score=200.07 Aligned_cols=157 Identities=22% Similarity=0.343 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhhceeeEEEEEeCCccceeceeccCCcEEEEEEEEE--cCCCCCCC-CCCceEEEEEeCCCCC--eEEee
Q 031159 6 LTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVV--NPNDGHPL-PESHKLTVRVTSAYGN--SYHYA 80 (164)
Q Consensus 6 ~~l~~~l~ll~~~~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~--~~~~~~~~-~~~~~i~~~v~dp~g~--~l~~~ 80 (164)
+.++++|++|+..++|++|++..++++||++++|+++++.|+|.+. +...+.|. .++.++.+.|.+|+++ +|..+
T Consensus 5 ~~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q 84 (215)
T KOG1690|consen 5 MRLLLLLLLLATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQ 84 (215)
T ss_pred HHHHHHHHHHHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEee
Confidence 4555556667789999999999999999999999999999999986 33333332 2467999999999887 89999
Q ss_pred eccccceEEEEeeccCceeEEEEeccCC--CCceEEEEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHHHHHHHHH
Q 031159 81 DRVDSGQFAFTAAEAGDYMACFWAVDHS--PQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEM 158 (164)
Q Consensus 81 ~~~~~g~~~f~~~~~G~y~~Cf~n~~~~--~~~~~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l~~I~~eq 158 (164)
+..++|+|+|++..+|+|+||+.+..+. .++..+|++|+++|.++.++++ .+++++.++.+++.|.+++.+|+.||
T Consensus 85 ~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a~--~ke~~k~l~~Rv~~L~~~~~~IrkEQ 162 (215)
T KOG1690|consen 85 QYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDAQ--IKETDKLLEGRVRQLNSRLESIRKEQ 162 (215)
T ss_pred cCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764 4678999999999999887764 57888899999999999999999999
Q ss_pred HHhhhC
Q 031159 159 FYLRER 164 (164)
Q Consensus 159 ~y~r~R 164 (164)
+|+|.|
T Consensus 163 ~~~R~R 168 (215)
T KOG1690|consen 163 NLQRER 168 (215)
T ss_pred HHHHHH
Confidence 999987
No 3
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-33 Score=198.84 Aligned_cols=139 Identities=21% Similarity=0.395 Sum_probs=128.1
Q ss_pred hceeeEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccC
Q 031159 17 STSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAG 96 (164)
Q Consensus 17 ~~~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G 96 (164)
..+.++-+.+++++++||+|++.+++.+.++|+|.+|+ ..++++.|++|.|+.++..+..+.|+|+|+++..|
T Consensus 16 ~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg-------~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G 88 (201)
T KOG1692|consen 16 ISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGG-------FLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKG 88 (201)
T ss_pred HHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecCC-------ccceeEEEECCCCchhhhcccccCceEEEEecCCc
Confidence 34889999999999999999999999999999999875 67999999999999999888888999999999999
Q ss_pred ceeEEEEeccCCCCceEEEEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 031159 97 DYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164 (164)
Q Consensus 97 ~y~~Cf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l~~I~~eq~y~r~R 164 (164)
.|++||+|..++ ..++.|.|++++|.... +++.+++.+.++|+..|++|++.+..++.||+|+..|
T Consensus 89 ~Y~fCF~N~~s~-mtpk~V~F~ihvg~~~~-~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~R 154 (201)
T KOG1692|consen 89 TYTFCFSNKMST-MTPKTVMFTIHVGHAPQ-RDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEAR 154 (201)
T ss_pred eEEEEecCCCCC-CCceEEEEEEEEeeccc-cchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999987 78899999999987654 4457889999999999999999999999999999875
No 4
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=187.35 Aligned_cols=156 Identities=21% Similarity=0.345 Sum_probs=132.4
Q ss_pred ChhhHHHH--HHHHHHHhhceeeEEEEEeCCccceeceeccCCcE-EEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeE
Q 031159 1 MIRLTLTL--VLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSM-TVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSY 77 (164)
Q Consensus 1 ~~~~~~~l--~~~l~ll~~~~~a~~f~i~~~~~~Cf~e~v~~~~~-v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l 77 (164)
|.++...+ +++++++++.+..++|++|.+.++|||+++++++. ++..|+|..|| +.+|++.|.+|+|+++
T Consensus 1 m~~~~~v~~~~~lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG-------~fDVD~~I~aPdgkvI 73 (209)
T KOG1693|consen 1 MPTLIVVLFQLLLLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG-------HFDVDYDIEAPDGKVI 73 (209)
T ss_pred CceeHHHHHHHHHHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC-------ceeeEEEEECCCCCEE
Confidence 34444444 44444555568899999999999999999999865 99999999986 6799999999999999
Q ss_pred EeeeccccceEEEEeeccCceeEEEEeccCCCCceEEEEEEEeecccccCchhh-hhcCCccHHHHHHHHHHHHHHHHHH
Q 031159 78 HYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNV-AKKGSVDVMELELKKLYDTVSSIHQ 156 (164)
Q Consensus 78 ~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~-a~~~~~~~l~~~l~~l~~~l~~I~~ 156 (164)
+....+..+.|.|++...|+|++||+|..++ +..+.|.++++.|.+..-..+. +++..+..+|..+..+.+.|+.|-+
T Consensus 74 ~~~~kk~~~~~~f~ae~~G~Y~fCFsN~fst-f~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~ 152 (209)
T KOG1693|consen 74 YSEKKKRYDSFLFKAEGKGEYTFCFSNEFST-FSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDD 152 (209)
T ss_pred eeccccccccEEEEEecceEEEEEecCcccc-ccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999899999999999999999999999998 8889999999999654433332 2344678999999999999999999
Q ss_pred HHHHhhhC
Q 031159 157 EMFYLRER 164 (164)
Q Consensus 157 eq~y~r~R 164 (164)
.|.|+|.|
T Consensus 153 ~q~y~R~R 160 (209)
T KOG1693|consen 153 TQTYYRLR 160 (209)
T ss_pred HHHHHHHH
Confidence 99999987
No 5
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-25 Score=163.28 Aligned_cols=139 Identities=17% Similarity=0.302 Sum_probs=119.5
Q ss_pred eeeEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCce
Q 031159 19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDY 98 (164)
Q Consensus 19 ~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y 98 (164)
...++|+||||+++|||+.++.+..+..+|+|++| +| +.+|++++.+|.|.++.+.+.+..|.+++...++|.|
T Consensus 33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~G-----Dl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY 106 (236)
T KOG3287|consen 33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-AG-----DLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDY 106 (236)
T ss_pred ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-CC-----ccceeeEEeCCCccEEeecccccCceeEeeccCCcce
Confidence 45689999999999999999999999999999998 33 7899999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCceEEEEEEEee---ccc---ccCchhhhhc-----CCccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 031159 99 MACFWAVDHSPQTTVTIDFDWRT---GVQ---AKDWSNVAKK-----GSVDVMELELKKLYDTVSSIHQEMFYLRER 164 (164)
Q Consensus 99 ~~Cf~n~~~~~~~~~~V~f~~~~---g~~---~~d~~~~a~~-----~~~~~l~~~l~~l~~~l~~I~~eq~y~r~R 164 (164)
++||+|++|+ .+.+.|+|++.. |+. ...|.+.++. .+++.+++.+.++..++.....-|..+|+|
T Consensus 107 ~~CfDNsFS~-fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~ 182 (236)
T KOG3287|consen 107 QVCFDNSFST-FSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAR 182 (236)
T ss_pred EEEEcCcccc-ccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 888999999833 332 2344443222 367888899999999999999999999876
No 6
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=99.94 E-value=3.4e-28 Score=177.07 Aligned_cols=137 Identities=31% Similarity=0.542 Sum_probs=0.0
Q ss_pred eEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEe--CCCCCeEEeeeccc-cceEEEEeeccCc
Q 031159 21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVT--SAYGNSYHYADRVD-SGQFAFTAAEAGD 97 (164)
Q Consensus 21 a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~--dp~g~~l~~~~~~~-~g~~~f~~~~~G~ 97 (164)
|++|.|+||+++||++++++++.+.++|.+.+++ ++.++++.|+ +|+|++++.+.... +|+|+|++...|+
T Consensus 1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~------~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~ 74 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG------GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGE 74 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc------ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCC
Confidence 6899999999999999999999999999998764 1468999999 55668888875554 5799999999999
Q ss_pred eeEEEEeccCCCCce-EEEEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 031159 98 YMACFWAVDHSPQTT-VTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164 (164)
Q Consensus 98 y~~Cf~n~~~~~~~~-~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l~~I~~eq~y~r~R 164 (164)
|++||+|+.+. ..+ +.|+|++++|.+..|+.+.++++++++++..|.+|...++.|+.+|.|++.|
T Consensus 75 y~iCf~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r 141 (183)
T PF01105_consen 75 YQICFDNSSSS-FSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLRER 141 (183)
T ss_dssp --------------------------------------------------------------------
T ss_pred EEEEEEcCCCC-ccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886 444 9999999999877677788999999999999999999999999999999876
No 7
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=95.51 E-value=0.37 Score=31.18 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=41.4
Q ss_pred cCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec---cccceEEEEee--c---cCceeEEEEecc
Q 031159 39 KSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR---VDSGQFAFTAA--E---AGDYMACFWAVD 106 (164)
Q Consensus 39 ~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~---~~~g~~~f~~~--~---~G~y~~Cf~n~~ 106 (164)
.+++.|.+.--+.+.+.....+.+..+.+.|.||+|+.+..+.. ...|.+++.-+ . .|.|++=+....
T Consensus 12 rPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~ 87 (99)
T PF01835_consen 12 RPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDD 87 (99)
T ss_dssp -TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETT
T ss_pred CCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEcc
Confidence 35666666655544331112335679999999999999987655 23554444432 2 488888777753
No 8
>PHA03376 BARF1; Provisional
Probab=92.80 E-value=2.2 Score=31.66 Aligned_cols=96 Identities=10% Similarity=0.113 Sum_probs=51.9
Q ss_pred ChhhHHHHHHHHHHHhhceeeEEEEEeCCcc-ceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEe
Q 031159 1 MIRLTLTLVLVIGILSSTSQSLRFEIQSAHT-KCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79 (164)
Q Consensus 1 ~~~~~~~l~~~l~ll~~~~~a~~f~i~~~~~-~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~ 79 (164)
|.|+.+.||++..++ ..+.++.-.+..... -|-+-.......+.+..+=..++ +..+-+.+. .|++++.
T Consensus 1 ~~~~~~~Ll~La~l~-~sg~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~-------~~~VvL~~~--ggdVv~~ 70 (221)
T PHA03376 1 MARFIAQLLLLASCV-AAGQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPG-------EEQVLIGRM--HHDVIFI 70 (221)
T ss_pred ChhHHHHHHHHHHHh-ccCcchhheeCCcEEEEecccCccCCCceEEEEEecCCC-------CCCEEEEEc--CCeeeee
Confidence 889988888866665 344455555554433 48887555555555554432221 234444443 2333332
Q ss_pred eecccc---------ceEEEEe-----eccCceeEEEEeccC
Q 031159 80 ADRVDS---------GQFAFTA-----AEAGDYMACFWAVDH 107 (164)
Q Consensus 80 ~~~~~~---------g~~~f~~-----~~~G~y~~Cf~n~~~ 107 (164)
+- +-+ |+++... -..|.|.-+|.-...
T Consensus 71 Qm-EyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~ 111 (221)
T PHA03376 71 EW-PFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGET 111 (221)
T ss_pred ee-ccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCC
Confidence 21 333 4444333 447999988886543
No 9
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=92.13 E-value=0.93 Score=27.39 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=39.8
Q ss_pred eeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccc-----cceEEEEeeccCceeEEE
Q 031159 33 CIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD-----SGQFAFTAAEAGDYMACF 102 (164)
Q Consensus 33 Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~-----~g~~~f~~~~~G~y~~Cf 102 (164)
.|.-+++++..+.+. +.++ ..+.++.+.+++|..+......+ .....|++...|+|.+=.
T Consensus 4 ~y~f~v~ag~~l~i~--l~~~--------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 4 YYSFTVPAGGTLTID--LSGG--------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEESTTEEEEEE--ECET--------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEcCCCEEEEE--EcCC--------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 466677787766555 4332 22677899999988777632222 355778888999997643
No 10
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=91.82 E-value=1.1 Score=29.29 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=13.0
Q ss_pred ccceEEEEeeccCceeE-EEEec
Q 031159 84 DSGQFAFTAAEAGDYMA-CFWAV 105 (164)
Q Consensus 84 ~~g~~~f~~~~~G~y~~-Cf~n~ 105 (164)
....+.|++...|+|.+ |=.+.
T Consensus 74 ~~~~~~f~~~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEFYCTMHP 96 (104)
T ss_dssp -EEEEEEEE-S-EEEEEB-SSS-
T ss_pred CEEEEEEcCCCCEEEEEEcCCCC
Confidence 35678888899999987 85433
No 11
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=91.62 E-value=2.4 Score=27.15 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=31.2
Q ss_pred CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecc
Q 031159 62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVD 106 (164)
Q Consensus 62 ~~~i~~~v~dp~g~~l~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~ 106 (164)
...+.+.|.+|+|+.+-.+ .+...| ..+|+....|.|.+.+.-..
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 4589999999999654322 223334 55778888899988877553
No 12
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=90.24 E-value=2.1 Score=26.79 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=27.8
Q ss_pred cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEe
Q 031159 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTA 92 (164)
Q Consensus 42 ~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~--~~~~g~~~f~~ 92 (164)
....+.|.+..+ ...+.+.|+|.+|++|.+.. ..+.|.+.|+-
T Consensus 12 ~~~~~~~~l~~~--------a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~W 56 (81)
T PF13860_consen 12 TKGSIEYTLPED--------ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTW 56 (81)
T ss_dssp CEEEEEEEECSS--------CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE
T ss_pred EEEEEEEeCCCc--------ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEE
Confidence 467777777543 34789999999999998643 22345444443
No 13
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=88.22 E-value=2.6 Score=27.84 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=31.4
Q ss_pred CceEEEEEeCCCCCeEEeeeccc--cceEEEEe--eccCceeEEEEeccC
Q 031159 62 SHKLTVRVTSAYGNSYHYADRVD--SGQFAFTA--AEAGDYMACFWAVDH 107 (164)
Q Consensus 62 ~~~i~~~v~dp~g~~l~~~~~~~--~g~~~f~~--~~~G~y~~Cf~n~~~ 107 (164)
...+.++|.|..|+++++..... ....++.. ...|.|.+=+.+...
T Consensus 47 ~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 47 IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp -SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 34799999999999999875433 33456665 457999999998865
No 14
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=87.61 E-value=0.78 Score=31.81 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=23.8
Q ss_pred EEEeeccCceeEEEEeccCCCCceEEEEEEE
Q 031159 89 AFTAAEAGDYMACFWAVDHSPQTTVTIDFDW 119 (164)
Q Consensus 89 ~f~~~~~G~y~~Cf~n~~~~~~~~~~V~f~~ 119 (164)
+++....|.|-++|+|+.|- ...|++.+.+
T Consensus 104 s~~c~~~GvYvLkFDNSYS~-~rsK~l~Y~V 133 (136)
T PF13897_consen 104 SHTCPGPGVYVLKFDNSYSW-FRSKKLYYRV 133 (136)
T ss_pred EEECCCCeEEEEEeeCccee-EEeeEEEEEE
Confidence 45567899999999999986 5667777665
No 15
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=87.46 E-value=8.4 Score=27.44 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=30.9
Q ss_pred ChhhHHHHHHHHHHHh----hceeeEEEEEeCCcc-ceeceeccCCcEEEEEEEEEcCC
Q 031159 1 MIRLTLTLVLVIGILS----STSQSLRFEIQSAHT-KCIAEDIKSNSMTVGKYNVVNPN 54 (164)
Q Consensus 1 ~~~~~~~l~~~l~ll~----~~~~a~~f~i~~~~~-~Cf~e~v~~~~~v~~~y~v~~~~ 54 (164)
|.....++|++++|++ .-.....|.+.||+. .=|.+.+. +-.-.++|.+.+|.
T Consensus 1 ~~~~~~~~l~~~~l~~~~s~~e~~t~eFdvkP~G~~~t~~~~~~-~~~C~FTYAaqGGT 58 (158)
T PF10572_consen 1 MAAWAALLLAAVLLLVVHSVSEPTTKEFDVKPGGVVHTFSESLG-KYKCTFTYAAQGGT 58 (158)
T ss_pred ChhHHHHHHHHHHHhhccccccccceeEEecCCCEEEEeEEecC-ceEEEEEEEecCCc
Confidence 4444455555444432 224556889999977 33433333 55667888887654
No 16
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=85.81 E-value=8.1 Score=25.97 Aligned_cols=78 Identities=13% Similarity=0.339 Sum_probs=46.2
Q ss_pred CccceeceeccC-CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCC-CCeEEeeec---cccceEEEEe---eccCceeE
Q 031159 29 AHTKCIAEDIKS-NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAY-GNSYHYADR---VDSGQFAFTA---AEAGDYMA 100 (164)
Q Consensus 29 ~~~~Cf~e~v~~-~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~-g~~l~~~~~---~~~g~~~f~~---~~~G~y~~ 100 (164)
++-.|..+++.. +..+ +|++ +|. ..-|.|.|.+ +.++|+... .+...|+... +...+|-+
T Consensus 37 ~rLFcVs~Die~L~aEv--~f~m-DGe---------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V 104 (132)
T PF15417_consen 37 GRLFCVSEDIEALDAEV--YFQM-DGE---------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVV 104 (132)
T ss_pred ceEEEEecchheeeeEE--EEEE-cCc---------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEE
Confidence 456788888866 3433 4444 443 3346777775 457776432 2244555544 45789999
Q ss_pred EEEeccCCCCceEEEEEEEee
Q 031159 101 CFWAVDHSPQTTVTIDFDWRT 121 (164)
Q Consensus 101 Cf~n~~~~~~~~~~V~f~~~~ 121 (164)
||....- ....|.+.|+.
T Consensus 105 ~ftGtkI---nhAvv~vtFeS 122 (132)
T PF15417_consen 105 CFTGTKI---NHAVVKVTFES 122 (132)
T ss_pred EEeccEe---eeEEEEEEecc
Confidence 9998763 33445555543
No 17
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=84.94 E-value=2.3 Score=25.41 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=35.7
Q ss_pred eEEEEEeCCCCCeEEe--eeccccceEEEEeeccCceeEEEEeccC
Q 031159 64 KLTVRVTSAYGNSYHY--ADRVDSGQFAFTAAEAGDYMACFWAVDH 107 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~~--~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 107 (164)
++.|.+++.++..... ......|.+.|.--..|.|.+=......
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~ 48 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD 48 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence 5778889888888775 5556789999999999999998887544
No 18
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=83.42 E-value=9.3 Score=24.36 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=28.0
Q ss_pred ceEEEEEeCCCCC----eEE-eeeccccc--eEEEEeeccCceeEEEEec
Q 031159 63 HKLTVRVTSAYGN----SYH-YADRVDSG--QFAFTAAEAGDYMACFWAV 105 (164)
Q Consensus 63 ~~i~~~v~dp~g~----~l~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~ 105 (164)
..+.+.|.+|++. .+. .-.+...| ..+|+....|.|++++.-.
T Consensus 42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~ 91 (101)
T PF00630_consen 42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN 91 (101)
T ss_dssp SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence 4678999999987 322 22223344 5567778888888876643
No 19
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=83.14 E-value=7.9 Score=29.36 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=38.2
Q ss_pred EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEe---------eccCceeEEEEec
Q 031159 43 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTA---------AEAGDYMACFWAV 105 (164)
Q Consensus 43 ~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~--~~~~g~~~f~~---------~~~G~y~~Cf~n~ 105 (164)
.+.+.|....+ ...+.+.|+|.+|++|+.-. ....|.+.|+- -..|.|.+=+...
T Consensus 114 ~~~~~~~l~~~--------a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 114 TTPFGVELPSA--------ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred ceEEEEEcCCC--------CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 45666665433 34799999999999998543 34577777743 2269999988755
No 20
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=82.47 E-value=30 Score=30.60 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=41.3
Q ss_pred CceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEE--EeccCCC--CceEEEEEEEe
Q 031159 62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACF--WAVDHSP--QTTVTIDFDWR 120 (164)
Q Consensus 62 ~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf--~n~~~~~--~~~~~V~f~~~ 120 (164)
+....+.|.. +|+.+....-..+..+.|+....|.|++=+ .+..|.+ -..+.|+|++.
T Consensus 415 ~~lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 415 NLRYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred eEEEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 4566666665 777777777778999999999999998754 4554541 23577777764
No 21
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=82.05 E-value=17 Score=26.49 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=30.2
Q ss_pred eEEEEEeCCCCCeEEe-eeccccceEEEEe---eccCceeEEEEeccCC
Q 031159 64 KLTVRVTSAYGNSYHY-ADRVDSGQFAFTA---AEAGDYMACFWAVDHS 108 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~~-~~~~~~g~~~f~~---~~~G~y~~Cf~n~~~~ 108 (164)
...+.+.+|+|+.+.. ..+.......+.. .+.|..++.+.|..+.
T Consensus 42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~ 90 (179)
T PF09315_consen 42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSS 90 (179)
T ss_pred CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCC
Confidence 4567799999998865 2333334333433 4579999999877654
No 22
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=81.64 E-value=13 Score=25.96 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=41.4
Q ss_pred eeEEEEEeCCccceeceeccCC---cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCe---EEee-----e--ccccc
Q 031159 20 QSLRFEIQSAHTKCIAEDIKSN---SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS---YHYA-----D--RVDSG 86 (164)
Q Consensus 20 ~a~~f~i~~~~~~Cf~e~v~~~---~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~---l~~~-----~--~~~~g 86 (164)
+.|...|.+..+.----+++.- +..-++|.+..... ..+.+..|.+++.|.++-. .... . -....
T Consensus 25 ~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I--~VkaGD~Vtl~vtN~d~~~H~f~i~~~gis~~I~pGet~ 102 (135)
T TIGR03096 25 QSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEAL--VVKKGTPVKVTVENKSPISEGFSIDAYGISEVIKAGETK 102 (135)
T ss_pred ceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEE--EECCCCEEEEEEEeCCCCccceEECCCCcceEECCCCeE
Confidence 4677777765544311113332 33355666643211 1123557877777665431 1111 1 11234
Q ss_pred eEEEEeeccCceeE-E
Q 031159 87 QFAFTAAEAGDYMA-C 101 (164)
Q Consensus 87 ~~~f~~~~~G~y~~-C 101 (164)
.++|++...|.|.+ |
T Consensus 103 TitF~adKpG~Y~y~C 118 (135)
T TIGR03096 103 TISFKADKAGAFTIWC 118 (135)
T ss_pred EEEEECCCCEEEEEeC
Confidence 57899999999975 6
No 23
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=81.27 E-value=2.2 Score=26.23 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=30.5
Q ss_pred eEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEeccC
Q 031159 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDH 107 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 107 (164)
.+.|.+.+..+...........|+|.|..-..|.|.+=+.....
T Consensus 16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGY 59 (82)
T ss_dssp T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTE
T ss_pred CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCc
Confidence 67888888888877766667799999997777999988865543
No 24
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=81.06 E-value=23 Score=27.49 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=39.4
Q ss_pred cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEeec---------cCceeEEEEecc
Q 031159 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAAE---------AGDYMACFWAVD 106 (164)
Q Consensus 42 ~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~~ 106 (164)
..+.+.|.+... ...+.+.|+|..|++|..-. ....|.+.|.-.. .|.|++=+....
T Consensus 128 ~~~~~~~~l~~~--------a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~~ 195 (259)
T PRK12812 128 ELIALKLYFPED--------SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYNN 195 (259)
T ss_pred ceeEEEEecCCc--------CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEEc
Confidence 355666665332 34799999999999997643 3446766666543 699999887544
No 25
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=81.04 E-value=8.6 Score=24.24 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=13.7
Q ss_pred CCceEEEEEeCCCCCeEEeee
Q 031159 61 ESHKLTVRVTSAYGNSYHYAD 81 (164)
Q Consensus 61 ~~~~i~~~v~dp~g~~l~~~~ 81 (164)
++...+|.|.|+.|+.|+.+.
T Consensus 22 sgq~~D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 22 SGQRYDFVVKDKEGKEVWRWS 42 (82)
T ss_dssp SS--EEEEEE-TT--EEEETT
T ss_pred CCCEEEEEEECCCCCEEEEec
Confidence 467899999999999999864
No 26
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=80.71 E-value=10 Score=28.73 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=38.8
Q ss_pred CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec-cccceEEEEe-------eccCceeEEEEeccC
Q 031159 41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR-VDSGQFAFTA-------AEAGDYMACFWAVDH 107 (164)
Q Consensus 41 ~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~-~~~g~~~f~~-------~~~G~y~~Cf~n~~~ 107 (164)
+..+.+.|.+... ...+.+.|+|.+|++|+...- .-.+.|.+.- ...|.|.+=......
T Consensus 110 g~~~~~~~~l~~~--------a~~v~v~I~D~~G~vV~t~~~~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~~ 176 (223)
T PRK12813 110 GTPVTISPNPAAD--------ADKAELVVRDAAGAEVARETVPVGAGPVEWAGEDADGNPLPNGAYSFVVESYSG 176 (223)
T ss_pred CceeEEEEeccCC--------CceEEEEEEcCCCCEEEEEeeCCCceeEEeCCcCCCCCcCCCccEEEEEEEEeC
Confidence 4466777766443 347999999999999976532 1234455542 225999998876643
No 27
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=79.97 E-value=1.1 Score=19.84 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=8.9
Q ss_pred ChhhHHHHHHHHH
Q 031159 1 MIRLTLTLVLVIG 13 (164)
Q Consensus 1 ~~~~~~~l~~~l~ 13 (164)
||++.+.|+++|.
T Consensus 1 MMk~vIIlvvLLl 13 (19)
T PF13956_consen 1 MMKLVIILVVLLL 13 (19)
T ss_pred CceehHHHHHHHh
Confidence 7888777666543
No 28
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=78.88 E-value=11 Score=22.07 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=33.6
Q ss_pred CCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEeccCC---CCceEEEEEEE
Q 031159 61 ESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS---PQTTVTIDFDW 119 (164)
Q Consensus 61 ~~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~---~~~~~~V~f~~ 119 (164)
.+......+.+.+++-+....... .+.|+....|.|.+-+...... ......+.|.|
T Consensus 6 ~~~~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 6 ENIRYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp TTEEEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred CceEEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 355666677777766544332211 8999999999999988776543 12225555554
No 29
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=76.68 E-value=18 Score=28.67 Aligned_cols=59 Identities=8% Similarity=-0.054 Sum_probs=37.9
Q ss_pred EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeecc----ccceEEEEee---------ccCceeEEEEec
Q 031159 43 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRV----DSGQFAFTAA---------EAGDYMACFWAV 105 (164)
Q Consensus 43 ~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~----~~g~~~f~~~---------~~G~y~~Cf~n~ 105 (164)
.+.+.|.+..+.. .+...+.+.|+|.+|++|+.-.-. ..|.+.|+-. ..|.|.|=....
T Consensus 150 ~~~~~~~l~~~~~----~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~ 221 (295)
T PRK05842 150 KLSFSLFFDEKID----ASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN 221 (295)
T ss_pred ceEEEEecccccc----ccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 5566665543211 023479999999999999865322 3477666632 259999988654
No 30
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=76.35 E-value=27 Score=26.39 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=33.9
Q ss_pred CceEEEEEeCCCCCeEEeee--ccccceEEEEeec---------cCceeEEEEecc
Q 031159 62 SHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAAE---------AGDYMACFWAVD 106 (164)
Q Consensus 62 ~~~i~~~v~dp~g~~l~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~~ 106 (164)
...+.+.|+|.+|++|+... ....|.+.|.-.. .|.|.+-.....
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~~ 176 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQTD 176 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEEe
Confidence 45799999999999998653 3456777776643 599999987544
No 31
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.49 E-value=5.6 Score=29.03 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=36.9
Q ss_pred ceeEEEEeccCCCCceEEEEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHHH
Q 031159 97 DYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVS 152 (164)
Q Consensus 97 ~y~~Cf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l~ 152 (164)
.--+|+.|..+. ...-+..|+++....+.|-++..+..+.+.++.+|+.+..++.
T Consensus 82 klvlvI~~~~tg-EvlErWqFnie~~~~~~d~~na~~~k~~~~iq~EIraviRQIt 136 (203)
T KOG3285|consen 82 KLVLVITSKHTG-EVLERWQFNIETENTASDGQNATRVKDLKRIQNEIRAVIRQIT 136 (203)
T ss_pred eEEEEEEecccc-cchhheeeeeeeeccccCcccccchhHHHHHHHHHHHHHHHHh
Confidence 445899998875 5567899999887766665554455556666666655555443
No 32
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=73.41 E-value=38 Score=25.75 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=33.1
Q ss_pred CceEEEEEeCCCCCeEEeee--ccccceEEEEee---------ccCceeEEEEecc
Q 031159 62 SHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFWAVD 106 (164)
Q Consensus 62 ~~~i~~~v~dp~g~~l~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~~ 106 (164)
...+.+.|+|..|++|+.-. ....|.+.|+-. ..|.|++=+....
T Consensus 128 a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~~ 183 (230)
T PRK12633 128 ATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSASD 183 (230)
T ss_pred CcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEEe
Confidence 44799999999999998643 345677777642 2589999887644
No 33
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=70.64 E-value=37 Score=26.21 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHHHhhceeeEEE-EEeCCccc----eeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEE-eCCCCCeEEeee
Q 031159 8 LVLVIGILSSTSQSLRF-EIQSAHTK----CIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRV-TSAYGNSYHYAD 81 (164)
Q Consensus 8 l~~~l~ll~~~~~a~~f-~i~~~~~~----Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v-~dp~g~~l~~~~ 81 (164)
+++++++|++....+.+ .++.. .+ |+...-.....|.++....-.+..... .-.+..|+| .|..+.......
T Consensus 3 l~ll~l~l~sC~~~i~~~~~~~~-~~lVV~~~i~~~~~~~~V~Ls~s~~~~~~~~~~-~v~~A~V~i~~~~~~~~~~~~~ 80 (298)
T PF14054_consen 3 LLLLLLLLSSCEKEIDIDDLDEE-PKLVVEGYITNPGDPQTVRLSRSVPYFDNSPPE-PVSGATVTIYEDGQGNEYLFEE 80 (298)
T ss_pred HHHHHHHHhccCcccccCcCCCC-CeEEEEEEEecCCCcEEEEEEEeecccCCCCCc-ccCCcEEEEEeCCCcceEeecc
Confidence 33444444555677777 55555 43 555544445677777666433211111 123555666 444444443332
Q ss_pred cccc-ceEE----EEeeccCceeEEEEe
Q 031159 82 RVDS-GQFA----FTAAEAGDYMACFWA 104 (164)
Q Consensus 82 ~~~~-g~~~----f~~~~~G~y~~Cf~n 104 (164)
.... |.|. |....+..|++=+.-
T Consensus 81 ~~~~~g~Y~~~~~~~~~~G~~Y~L~V~~ 108 (298)
T PF14054_consen 81 SSNNDGVYYSSNSFRGRPGRTYRLEVET 108 (298)
T ss_pred cCCCcceEEecccccccCCCEEEEEEEE
Confidence 2221 4444 233334455554444
No 34
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=70.46 E-value=15 Score=24.67 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=32.4
Q ss_pred CccceeceeccCCcEE--EEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEec
Q 031159 29 AHTKCIAEDIKSNSMT--VGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAV 105 (164)
Q Consensus 29 ~~~~Cf~e~v~~~~~v--~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~ 105 (164)
.++.|=. +..++.+ .+.|++...- ++..+.+.|++..|..++.... ......+....+|.|++++.-+
T Consensus 24 ~g~~~~~--~~~ge~~~i~i~~~~~~~i------~~~~~~~~i~~~~g~~v~~~~t-~~~~~~~~~~~~g~~~~~~~i~ 93 (142)
T PF14524_consen 24 DGEPTSS--FESGEPIRIRIDYEVNEDI------DDPVFGFAIRDSDGQRVFGTNT-YDSGFPIPLSEGGTYEVTFTIP 93 (142)
T ss_dssp TEES-SS--EETTSEEEEEEEEEESS-E------EEEEEEEEEEETT--EEEEEEH-HHHT--EEE-TT-EEEEEEEEE
T ss_pred CCCEeeE--EeCCCEEEEEEEEEECCCC------CccEEEEEEEcCCCCEEEEECc-cccCccccccCCCEEEEEEEEc
Confidence 3444544 4445544 4455542221 2568999999999998885332 2222333333366666655433
No 35
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=70.27 E-value=25 Score=26.52 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=37.7
Q ss_pred cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee-ccccceEEEEee------ccCceeEEEEecc
Q 031159 42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD-RVDSGQFAFTAA------EAGDYMACFWAVD 106 (164)
Q Consensus 42 ~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~-~~~~g~~~f~~~------~~G~y~~Cf~n~~ 106 (164)
....+.|.+... ...+.+.|+|.+|++..... ....|.+.|+-. ..|.|++=+....
T Consensus 110 ~~~~~~~~L~~~--------a~~v~v~I~D~~G~v~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~~ 173 (218)
T PRK09619 110 DPVAGRLTLKHP--------APTLTLHITDILGQEKKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSGS 173 (218)
T ss_pred CeeEEEEecCCc--------CcEEEEEEEeCCCCEEEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEeC
Confidence 455666765433 34799999999999732222 234677777753 3699999887554
No 36
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=70.03 E-value=40 Score=24.63 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=23.4
Q ss_pred ceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeC
Q 031159 35 AEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTS 71 (164)
Q Consensus 35 ~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~d 71 (164)
-+.+..+..+.++|.+.+.|. +.-.+|++.|
T Consensus 31 ~~~~v~g~~v~V~~~iyN~G~------~~A~dV~l~D 61 (181)
T PF05753_consen 31 NKYLVEGEDVTVTYTIYNVGS------SAAYDVKLTD 61 (181)
T ss_pred cccccCCcEEEEEEEEEECCC------CeEEEEEEEC
Confidence 344666899999999987652 4577788888
No 37
>PRK02710 plastocyanin; Provisional
Probab=68.70 E-value=32 Score=23.04 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=12.9
Q ss_pred ccceEEEEeeccCceeE-EE
Q 031159 84 DSGQFAFTAAEAGDYMA-CF 102 (164)
Q Consensus 84 ~~g~~~f~~~~~G~y~~-Cf 102 (164)
+...++++....|.|.+ |-
T Consensus 86 pg~t~~~tF~~~G~y~y~C~ 105 (119)
T PRK02710 86 PGESWEETFSEAGTYTYYCE 105 (119)
T ss_pred CCCEEEEEecCCEEEEEEcC
Confidence 34456666666999966 85
No 38
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=67.81 E-value=15 Score=24.73 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=25.5
Q ss_pred eCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee
Q 031159 27 QSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA 80 (164)
Q Consensus 27 ~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~ 80 (164)
..+...++...+.++...-+..-..+++ ....++++|.+|+|..+...
T Consensus 55 ~~~~~~~~tv~L~aG~yyPiRi~~~N~~------g~~~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 55 STGASKSVTVYLTAGTYYPIRIVYANGG------GPGSFDFSITDPDGTVHTDD 102 (113)
T ss_dssp SS-SEEEEEEEE-TT-BEEEEEEEEE-S------S-EEEEEEEEETT-S--B--
T ss_pred CCCCceEEEEEEECCcEEEEEEEEEcCC------CceEEEEEEECCCCcEEecC
Confidence 3445678888888886443333333322 14589999999999988754
No 39
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=64.92 E-value=20 Score=21.99 Aligned_cols=53 Identities=8% Similarity=0.151 Sum_probs=20.6
Q ss_pred eccCceeEEEEeccCCCCceEEEEEEEeecccccCchhhhhcCCccHHHHHHHHHH
Q 031159 93 AEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLY 148 (164)
Q Consensus 93 ~~~G~y~~Cf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~ 148 (164)
...+.-++.|.|-... ...+.++|.+.++. ..|.-......++.++..+.+|+
T Consensus 4 ~~~d~lkf~F~~id~~-d~~re~s~~l~i~~--~~Y~v~~~~P~l~~l~~l~~~LN 56 (74)
T PF08234_consen 4 IGGDQLKFVFTNIDPN-DPDREFSFTLDISS--DKYEVISCDPPLEDLDELVDELN 56 (74)
T ss_dssp -STT-EEEEE-S-BTT-BSSS-EEEEEE-SS--S-EE----------THHHHHHHH
T ss_pred cCCceEEEEEeEcCCC-CCCceEEEEEEECC--CeEEEEEecCCcchHHHHHHHHh
Confidence 3455578888888764 34466777776665 34554333444444444333333
No 40
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=64.68 E-value=45 Score=30.98 Aligned_cols=47 Identities=26% Similarity=0.268 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCCCeEEe---eeccccceEEEEeeccCceeEEEEeccCC
Q 031159 62 SHKLTVRVTSAYGNSYHY---ADRVDSGQFAFTAAEAGDYMACFWAVDHS 108 (164)
Q Consensus 62 ~~~i~~~v~dp~g~~l~~---~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~ 108 (164)
..++.+.+.||+|+..-. .-....=+..|+..+.|.|.+|..+....
T Consensus 882 ~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~~ 931 (1113)
T KOG0518|consen 882 SQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQH 931 (1113)
T ss_pred ccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCcc
Confidence 568999999999985432 22223347789999999999999988765
No 41
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=64.25 E-value=1e+02 Score=27.49 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=38.0
Q ss_pred eEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeE-EEEeccCC-C--CceEEEEEEE
Q 031159 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMA-CFWAVDHS-P--QTTVTIDFDW 119 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~-Cf~n~~~~-~--~~~~~V~f~~ 119 (164)
--.|.+.+++|.....+.-...+.|++++...|.|++ |.--..++ . .....+.|++
T Consensus 224 LYKF~~i~~~G~~~~~qdYst~n~~~y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~V 283 (667)
T PRK14081 224 LYKFVKIDSDGKQTCIQDYSTKNIVSYKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTV 283 (667)
T ss_pred EEEEEEECCCCCEEEecCccccceEEEEeCCCccEEEEEEEeccCcccccccceEEEEEE
Confidence 4455566788887777777789999999999999988 54333332 1 2235555555
No 42
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=57.79 E-value=54 Score=26.93 Aligned_cols=67 Identities=10% Similarity=0.296 Sum_probs=34.8
Q ss_pred eEEEEEeCCccceecee--ccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccc---cceEEEEeecc
Q 031159 21 SLRFEIQSAHTKCIAED--IKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD---SGQFAFTAAEA 95 (164)
Q Consensus 21 a~~f~i~~~~~~Cf~e~--v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~---~g~~~f~~~~~ 95 (164)
.+.+.|..+ .|--.. ++.|. ..|.|.+.+ .....|.+.+. +.++-..++.. ++.+.++. ..
T Consensus 31 ~v~Vti~d~--~c~p~~~tVpAG~---~~f~V~N~~-------~~~~Efe~~~~-~~vv~e~EnIaPG~s~~l~~~L-~p 96 (375)
T PRK10378 31 QVKVTVNDK--QCEPMTLTVNAGK---TQFIIQNHS-------QKALEWEILKG-VMVVEERENIAPGFSQKMTANL-QP 96 (375)
T ss_pred ceEEEEECC--ccccCceeeCCCC---EEEEEEeCC-------CCcceEEeecc-ccccccccccCCCCceEEEEec-CC
Confidence 456666664 576555 55664 455565543 23455555532 22323233222 23444333 69
Q ss_pred CceeE-E
Q 031159 96 GDYMA-C 101 (164)
Q Consensus 96 G~y~~-C 101 (164)
|+|.+ |
T Consensus 97 GtY~~~C 103 (375)
T PRK10378 97 GEYDMTC 103 (375)
T ss_pred ceEEeec
Confidence 99988 9
No 43
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.07 E-value=1.2e+02 Score=25.14 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=27.9
Q ss_pred CceEEEEEeCCCCCeEEeeeccccceEEEEee----ccCceeEEEEec
Q 031159 62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAA----EAGDYMACFWAV 105 (164)
Q Consensus 62 ~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~----~~G~y~~Cf~n~ 105 (164)
...+.+++.+|++..+......+ |...+. ..|.|+.=+.-.
T Consensus 69 ~etV~Vtl~G~ns~~~~~~~~~d---FkV~ADLt~a~~Gt~evkl~ve 113 (403)
T COG4856 69 PETVTVTLKGPNSIVLKSEKPED---FKVVADLTHAGVGTHEVKLQVE 113 (403)
T ss_pred ceEEEEEEeCCcceeeeeecCcC---eEEEEEhhhcCCCceEeeeEee
Confidence 35899999999999888654333 655552 358887765543
No 44
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=56.02 E-value=32 Score=20.25 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=27.7
Q ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031159 132 AKKGSVDVMELELKKLYDTVSSIHQEMFYLRE 163 (164)
Q Consensus 132 a~~~~~~~l~~~l~~l~~~l~~I~~eq~y~r~ 163 (164)
|=.++++-|...|..|.++...+..|-.++|.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44688999999999999999999999888874
No 45
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.34 E-value=22 Score=20.81 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=17.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhh
Q 031159 136 SVDVMELELKKLYDTVSSIHQEMFYLR 162 (164)
Q Consensus 136 ~~~~l~~~l~~l~~~l~~I~~eq~y~r 162 (164)
+++.|...+..|..++..+..+..-+|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667766666666655544
No 46
>COG5510 Predicted small secreted protein [Function unknown]
Probab=48.35 E-value=13 Score=20.52 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=7.9
Q ss_pred ChhhHHHHHHHHHH
Q 031159 1 MIRLTLTLVLVIGI 14 (164)
Q Consensus 1 ~~~~~~~l~~~l~l 14 (164)
||+.++++++++++
T Consensus 1 mmk~t~l~i~~vll 14 (44)
T COG5510 1 MMKKTILLIALVLL 14 (44)
T ss_pred CchHHHHHHHHHHH
Confidence 67776665554433
No 47
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=48.02 E-value=83 Score=21.10 Aligned_cols=15 Identities=33% Similarity=0.158 Sum_probs=11.8
Q ss_pred ccCceeEEEEeccCC
Q 031159 94 EAGDYMACFWAVDHS 108 (164)
Q Consensus 94 ~~G~y~~Cf~n~~~~ 108 (164)
..|.|++.|.....-
T Consensus 56 ~~G~Y~l~F~~g~Yf 70 (112)
T TIGR02962 56 AAGIYKLRFDTGDYF 70 (112)
T ss_pred CCeeEEEEEEhhhhh
Confidence 469999999877653
No 48
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=42.37 E-value=11 Score=25.35 Aligned_cols=23 Identities=13% Similarity=0.439 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHhhceeeEEE
Q 031159 2 IRLTLTLVLVIGILSSTSQSLRF 24 (164)
Q Consensus 2 ~~~~~~l~~~l~ll~~~~~a~~f 24 (164)
||++..+++.++++++.+.|+.+
T Consensus 1 Mkls~s~~~ala~~~~~a~als~ 23 (113)
T PF05388_consen 1 MKLSTSTLAALALLAGSANALSV 23 (113)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 67777777777777777788877
No 49
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=42.33 E-value=1.1e+02 Score=21.04 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCCeEEeeeccc-cce---EEEEee---ccCceeEEEEeccCCC-CceEEEEEEE
Q 031159 64 KLTVRVTSAYGNSYHYADRVD-SGQ---FAFTAA---EAGDYMACFWAVDHSP-QTTVTIDFDW 119 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~~~~~~~-~g~---~~f~~~---~~G~y~~Cf~n~~~~~-~~~~~V~f~~ 119 (164)
.-.+.+.+|+|..+-...... +++ ...... ..|.|.+-..--.+.+ ...-.+.|++
T Consensus 61 fs~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV 124 (127)
T COG2372 61 FSGAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVSSDGHVVKGSISFSV 124 (127)
T ss_pred cceeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEecCCcEeccEEEEEe
Confidence 466789999999876532221 221 333332 3599988765544321 2234555554
No 50
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=41.31 E-value=1.2e+02 Score=28.31 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=28.0
Q ss_pred eEEEEEeCCCCCeEEee-eccc---cceEEEEeeccCceeEEEE
Q 031159 64 KLTVRVTSAYGNSYHYA-DRVD---SGQFAFTAAEAGDYMACFW 103 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~~~-~~~~---~g~~~f~~~~~G~y~~Cf~ 103 (164)
.+.+.|.||+|+..-.. .+.. .-.++|.....|.|.+=+.
T Consensus 391 ~levqV~gp~Gk~~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~ 434 (1113)
T KOG0518|consen 391 LLEVQVVGPEGKEKEVVVRDNGRGGIHIVTYVPDCPGRYLIVVF 434 (1113)
T ss_pred eEEEEEECCCCCceeeEEEecCCCceEEEEEcCCCCCceEEEEE
Confidence 49999999999854221 1222 3477777888999988654
No 51
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=40.55 E-value=30 Score=25.43 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHhh-ceeeEEEEEeCC-ccceece
Q 031159 2 IRLTLTLVLVIGILSS-TSQSLRFEIQSA-HTKCIAE 36 (164)
Q Consensus 2 ~~~~~~l~~~l~ll~~-~~~a~~f~i~~~-~~~Cf~e 36 (164)
|++.++|+++++++.. ....-++.+.|- ...|=.+
T Consensus 1 MKll~~lilli~~~~~~~~~~~yvn~~py~~~~Cs~~ 37 (212)
T PF11912_consen 1 MKLLISLILLILLIINFSSSSQYVNFQPYQDSQCSGE 37 (212)
T ss_pred CcHHHHHHHHHHHHHhhhcCCcEEEEEEecCCCCCcC
Confidence 5664444444333322 245555655554 5678733
No 52
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=40.44 E-value=24 Score=24.67 Aligned_cols=11 Identities=55% Similarity=0.902 Sum_probs=7.3
Q ss_pred ChhhHHHHHHH
Q 031159 1 MIRLTLTLVLV 11 (164)
Q Consensus 1 ~~~~~~~l~~~ 11 (164)
|||+.++|+++
T Consensus 1 ~~~~~~~~~~~ 11 (141)
T PRK12618 1 MMRLVLLLLLL 11 (141)
T ss_pred ChhHHHHHHHH
Confidence 78887665543
No 53
>PF09116 gp45-slide_C: gp45 sliding clamp, C terminal; InterPro: IPR015200 This domain is essential for the interaction of the gp45 sliding clamp with the corresponding polymerase. It adopts a DNA clamp fold, consisting of two alpha helices and two beta sheets - the fold is duplicated and has internal pseudo two-fold symmetry []. ; PDB: 1B8H_A 1B77_B 3U61_F 3U60_G 3U5Z_R 1CZD_B.
Probab=39.88 E-value=73 Score=21.46 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=22.7
Q ss_pred EEEeCCCCCeEEee-----eccccceEEEEeec-cCc--eeEEEEecc
Q 031159 67 VRVTSAYGNSYHYA-----DRVDSGQFAFTAAE-AGD--YMACFWAVD 106 (164)
Q Consensus 67 ~~v~dp~g~~l~~~-----~~~~~g~~~f~~~~-~G~--y~~Cf~n~~ 106 (164)
+.+...+|+++... ++.++..|++..-+ .|. |.+||.-.+
T Consensus 26 l~~~~~~gkivv~~~~~~~~~~tsn~ysv~vge~~~~~~F~f~~k~eN 73 (112)
T PF09116_consen 26 LCFVNDDGKIVVTDFNKDDKNDTSNSYSVEVGEYDGDNNFCFCFKMEN 73 (112)
T ss_dssp EEEEEETTEEEEEEE-TTSTTS-S-SEEEEEEE--SS--EEEEEEGGG
T ss_pred EEEEecCCEEEEEccccccccCCCCceEEEEeccCCCccEEEEEEece
Confidence 34455566765543 23447788887744 366 888887554
No 54
>PF04887 Pox_M2: Poxvirus M2 protein; InterPro: IPR006971 This family includes M2 protein of unknown function from variola virus.
Probab=39.13 E-value=41 Score=24.74 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=30.4
Q ss_pred hhceeeEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCe
Q 031159 16 SSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS 76 (164)
Q Consensus 16 ~~~~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~ 76 (164)
+.++-++...|+.. .+|+++....+..-.+ ++.|- +..|.+.+.+|..+.
T Consensus 14 a~LTIGlnY~I~e~-~EC~~~~~~~~~~s~i---~lTGY-------GL~I~m~it~~~dqr 63 (197)
T PF04887_consen 14 AELTIGLNYPITET-GECHMKIIYNDHNSTI---NLTGY-------GLNINMEITNEIDQR 63 (197)
T ss_pred EEEEEEeeeccCcc-ceEEEEEeecccccce---eeeec-------cEEEEEEEccccchh
Confidence 35667778888887 8999998655421111 11221 567777777765443
No 55
>PRK15396 murein lipoprotein; Provisional
Probab=38.44 E-value=53 Score=20.58 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=23.3
Q ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHhh
Q 031159 132 AKKGSVDVMELELKKLYDTVSSIHQEMFYLR 162 (164)
Q Consensus 132 a~~~~~~~l~~~l~~l~~~l~~I~~eq~y~r 162 (164)
++..+++.|...++.|...++.+..+..-+|
T Consensus 22 As~~kvd~LssqV~~L~~kvdql~~dv~~~~ 52 (78)
T PRK15396 22 SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMR 52 (78)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888888888888887766554
No 56
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=38.06 E-value=32 Score=23.62 Aligned_cols=55 Identities=20% Similarity=0.083 Sum_probs=24.4
Q ss_pred ceeeEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCC
Q 031159 18 TSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGN 75 (164)
Q Consensus 18 ~~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~ 75 (164)
...+..+.+.+.+-. .+..+.+..+++.=.|..|+.. +.|+...+.|.|.|....
T Consensus 29 ~~~~~~yy~t~se~~--~~~~~~~~~vrv~G~V~~gSv~-~~~~~~~~~F~i~D~~~~ 83 (131)
T PF03100_consen 29 FSDSAVYYLTPSELA--AEPQKVGRKVRVGGLVVEGSVE-YDPDGNTLTFTITDGGKE 83 (131)
T ss_dssp ---SSS-EE-TTTTT--TTST-TTSEEEEEEEEECTTEE-E-TTSSEEEEEEE-SS-E
T ss_pred hhccceEEcCHHHHh--hccccCCceEEEeeEEccCCEE-EcCCCCEEEEEEEECCcE
Confidence 344455555554321 1111345555555556554322 334577999999988544
No 57
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=37.12 E-value=99 Score=18.90 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=30.9
Q ss_pred eEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEeccCCCCceEEEEEEE
Q 031159 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDW 119 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~~~V~f~~ 119 (164)
.+.+.+.+.... .....+|+|.+. -..|.|.+-|+.... ....+.++.
T Consensus 17 ~a~V~~~~~~~~----~~Td~~G~F~i~-~~~g~~~l~is~~Gy---~~~~~~i~~ 64 (88)
T PF13715_consen 17 GATVYLKNTKKG----TVTDENGRFSIK-LPEGDYTLKISYIGY---ETKTITISV 64 (88)
T ss_pred CeEEEEeCCcce----EEECCCeEEEEE-EcCCCeEEEEEEeCE---EEEEEEEEe
Confidence 666677655511 112368999999 558999999987654 344444444
No 58
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=36.96 E-value=52 Score=15.56 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=8.9
Q ss_pred ccHHHHHHHHHHHHHHH
Q 031159 137 VDVMELELKKLYDTVSS 153 (164)
Q Consensus 137 ~~~l~~~l~~l~~~l~~ 153 (164)
|+.+...|..|+.++..
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555543
No 59
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=35.55 E-value=53 Score=21.92 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=23.7
Q ss_pred hhhcCCccHHHHHHHHHHHHHHHHHHHH
Q 031159 131 VAKKGSVDVMELELKKLYDTVSSIHQEM 158 (164)
Q Consensus 131 ~a~~~~~~~l~~~l~~l~~~l~~I~~eq 158 (164)
+++...+..+...|..|..++.++++++
T Consensus 79 ~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 79 VARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667788899999999999999998775
No 60
>PRK10190 L,D-transpeptidase; Provisional
Probab=35.32 E-value=45 Score=26.63 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=24.4
Q ss_pred ChhhHHHHHHHHHHHhhceeeEEEEEeCCccceece
Q 031159 1 MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAE 36 (164)
Q Consensus 1 ~~~~~~~l~~~l~ll~~~~~a~~f~i~~~~~~Cf~e 36 (164)
|-|.-+++++.+++++..+.|..+.+|+...+.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~A~~y~lp~~~~~lvG~ 36 (310)
T PRK10190 1 MRRVNILCSFALLFASHTSLAVTYPLPPEGSRLVGQ 36 (310)
T ss_pred CcchhhHHHHHHHHhhccccceeeccCCCCCceecc
Confidence 445555555555555566789999999887766654
No 61
>PF02927 CelD_N: N-terminal ig-like domain of cellulase; InterPro: IPR004197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Cellulases (Endoglucanases) 3.2.1.4 from EC catalyse the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose. This is the N-terminal ig-like domain of cellulase, enzymes containing this domain belong to family 9 of the glycoside hydrolases (GH9 from CAZY).; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1CLC_A 1WMX_B 2C24_B 1RQ5_A 3K4Z_A 3H7L_B 3RX5_A 3RX8_A 3H2W_A 3RX7_A ....
Probab=35.10 E-value=1.2e+02 Score=19.18 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCeEEeee------ccccceEEEEe-----eccCceeEEEEec
Q 031159 64 KLTVRVTSAYGNSYHYAD------RVDSGQFAFTA-----AEAGDYMACFWAV 105 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~~~~------~~~~g~~~f~~-----~~~G~y~~Cf~n~ 105 (164)
...+.|.|..++.+++-. +..++...+.+ +..|+|.+.....
T Consensus 35 ~~~f~l~d~~~~~V~~g~~~~~~~~~~s~~~~~~~DFS~~~~~G~Y~i~~~~~ 87 (91)
T PF02927_consen 35 PSTFELVDASGGKVYTGKLSPAGVDPWSGEYVYRIDFSDLTTPGTYYIRVGGA 87 (91)
T ss_dssp --EEEEEETTSBEEEEEEEEEEEECTTTTEEEEEEE-TT--S-EEEEEEETTE
T ss_pred eeEEEEEcCCCCEEEEEEeeCccccCCCCCeEEEEEcCCcCCCEEEEEEECCc
Confidence 456677777766665421 22234444333 3458888776543
No 62
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=34.25 E-value=75 Score=25.76 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=18.1
Q ss_pred ceEEEEeeccCceeEEEEeccCC
Q 031159 86 GQFAFTAAEAGDYMACFWAVDHS 108 (164)
Q Consensus 86 g~~~f~~~~~G~y~~Cf~n~~~~ 108 (164)
--|+..-+..+.+.+||+|++..
T Consensus 270 rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred hhheeccchhheeeeeeCCCcce
Confidence 35666677889999999998764
No 63
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=33.71 E-value=2.7e+02 Score=22.95 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=28.5
Q ss_pred CCCceEEEEEeCCCCCeEEeeeccccceEEEEe---eccCceeEEEEe
Q 031159 60 PESHKLTVRVTSAYGNSYHYADRVDSGQFAFTA---AEAGDYMACFWA 104 (164)
Q Consensus 60 ~~~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~---~~~G~y~~Cf~n 104 (164)
|.+..+.+.+..|+|..........++...+.. .+-|.|++-.+-
T Consensus 239 ~~s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~ 286 (374)
T TIGR03503 239 PGSLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTV 286 (374)
T ss_pred cccEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEE
Confidence 346789999999999844433344444444444 245999886443
No 64
>PRK10301 hypothetical protein; Provisional
Probab=33.67 E-value=1.5e+02 Score=20.06 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=25.3
Q ss_pred eEEEEEeCCCCCeEEeeec---cc-cceEEEEee---ccCceeEEEEecc
Q 031159 64 KLTVRVTSAYGNSYHYADR---VD-SGQFAFTAA---EAGDYMACFWAVD 106 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~~~~~---~~-~g~~~f~~~---~~G~y~~Cf~n~~ 106 (164)
...+.+.|++|+.+..... .. ...+..... ..|.|.+=-..-.
T Consensus 60 ~s~i~v~~~~g~~v~~~~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 60 FSGATITGPKQENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred ccEEEEEcCCCCEeccCCccccCCCCcEEEEECCCCCCCccEEEEEEEEe
Confidence 4567888999987654321 11 223555543 4699988655443
No 65
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=33.40 E-value=79 Score=20.86 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=24.4
Q ss_pred ccCceeEEEEeccCCCCceEEEEEEEeeccc
Q 031159 94 EAGDYMACFWAVDHSPQTTVTIDFDWRTGVQ 124 (164)
Q Consensus 94 ~~G~y~~Cf~n~~~~~~~~~~V~f~~~~g~~ 124 (164)
.+..|.+=|.+.-+. ...+.++|++.+|..
T Consensus 59 ~g~WY~l~F~C~vd~-d~~~V~sF~~~vG~~ 88 (101)
T PF06059_consen 59 RGKWYDLSFRCEVDP-DATKVTSFSFKVGDP 88 (101)
T ss_pred CCeEEEEEEEEEECC-CceEEEEEeeccCCc
Confidence 457899988888775 667899999999964
No 66
>PHA02932 hypothetical protein; Provisional
Probab=32.94 E-value=78 Score=23.51 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=29.6
Q ss_pred eEEEEEeCC-ccceecee--ccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeecc
Q 031159 21 SLRFEIQSA-HTKCIAED--IKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRV 83 (164)
Q Consensus 21 a~~f~i~~~-~~~Cf~e~--v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~ 83 (164)
+++..|+.. ..+|+..+ +..++.+.+ .|. +..|++++++-.++.|...++.
T Consensus 42 GLny~I~Eti~~EC~m~e~yi~~nstivl-----TGY-------Gl~Ini~it~i~q~~VAaaeG~ 95 (221)
T PHA02932 42 GLNYDINETIIGECHMSESYIDRNSTIVL-----TGY-------GLEINITITDIDQRFVAAAEGV 95 (221)
T ss_pred eeceecchhhhceeeecceeecccceEEE-----Ecc-------cEEEEEEEEeecceeEeeeecc
Confidence 445556443 35899884 455555533 221 5577777777666666654443
No 67
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=32.87 E-value=1.6e+02 Score=20.10 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=21.6
Q ss_pred ccccceEEEEeeccCceeEEEEeccC
Q 031159 82 RVDSGQFAFTAAEAGDYMACFWAVDH 107 (164)
Q Consensus 82 ~~~~g~~~f~~~~~G~y~~Cf~n~~~ 107 (164)
...+|++.+.+...|.|.+-|.|...
T Consensus 84 TD~~Gki~Wk~~~kG~Y~v~l~n~e~ 109 (131)
T PF10794_consen 84 TDEEGKIIWKNGRKGKYIVFLPNGET 109 (131)
T ss_pred cCCCCcEEEecCCcceEEEEEcCCCc
Confidence 34589999999999999999988753
No 68
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=32.79 E-value=50 Score=21.74 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=19.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHH
Q 031159 135 GSVDVMELELKKLYDTVSSIHQEM 158 (164)
Q Consensus 135 ~~~~~l~~~l~~l~~~l~~I~~eq 158 (164)
-.++|+++++++|+...++..+..
T Consensus 31 ldv~pi~Eqi~kLe~~vddl~~sl 54 (108)
T COG4062 31 LDVDPIEEQIKKLETLVDDLENSL 54 (108)
T ss_pred EeccHHHHHHHHHHHHHHHHHhcc
Confidence 467999999999999998876643
No 69
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.67 E-value=40 Score=25.84 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 031159 136 SVDVMELELKKLYDTVSSIHQEMFYLRER 164 (164)
Q Consensus 136 ~~~~l~~~l~~l~~~l~~I~~eq~y~r~R 164 (164)
++-.++.+|.++...++.++..+.|+..|
T Consensus 163 d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 163 DLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34477788888888888888888888764
No 70
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=32.55 E-value=58 Score=24.64 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=26.0
Q ss_pred ceEEEEEeCCCCCeEEeeecc---cc-ceEEE--EeeccCceeEEEEec
Q 031159 63 HKLTVRVTSAYGNSYHYADRV---DS-GQFAF--TAAEAGDYMACFWAV 105 (164)
Q Consensus 63 ~~i~~~v~dp~g~~l~~~~~~---~~-g~~~f--~~~~~G~y~~Cf~n~ 105 (164)
..+++.|+|.+|+.+...... .. +.|.. ..-..|.|+++.-..
T Consensus 29 ~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n 77 (283)
T PF08842_consen 29 KRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGN 77 (283)
T ss_dssp -EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES
T ss_pred eEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEEC
Confidence 489999999999965543211 12 55655 223469999976654
No 71
>PRK09810 entericidin A; Provisional
Probab=31.70 E-value=50 Score=18.01 Aligned_cols=10 Identities=40% Similarity=0.673 Sum_probs=4.8
Q ss_pred ChhhHHHHHH
Q 031159 1 MIRLTLTLVL 10 (164)
Q Consensus 1 ~~~~~~~l~~ 10 (164)
||+-.+.+++
T Consensus 1 mMkk~~~l~~ 10 (41)
T PRK09810 1 MMKRLIVLVL 10 (41)
T ss_pred ChHHHHHHHH
Confidence 5555444443
No 72
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=31.53 E-value=41 Score=19.76 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=17.1
Q ss_pred hhhcCCccHHHHHHHHHHHHHH
Q 031159 131 VAKKGSVDVMELELKKLYDTVS 152 (164)
Q Consensus 131 ~a~~~~~~~l~~~l~~l~~~l~ 152 (164)
.+++.+..+++.+++++.+.++
T Consensus 35 ~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 35 NAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred cccccchhHHHHHHHHHHHHHc
Confidence 3577888889998888887764
No 73
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=31.53 E-value=3.3e+02 Score=23.26 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=36.9
Q ss_pred CceEEEEEeCCCCCeEEeee-ccccceEEEEe----eccCceeEEEEeccCCC--CceEEEEEEE
Q 031159 62 SHKLTVRVTSAYGNSYHYAD-RVDSGQFAFTA----AEAGDYMACFWAVDHSP--QTTVTIDFDW 119 (164)
Q Consensus 62 ~~~i~~~v~dp~g~~l~~~~-~~~~g~~~f~~----~~~G~y~~Cf~n~~~~~--~~~~~V~f~~ 119 (164)
+..|.++|+|.+|+.+.... ....+...++. -+.|.|++=.....+.. .....+.|.+
T Consensus 340 ~~~vta~V~d~~g~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~t~~dG~~~~q~~~~~~v 404 (478)
T PRK13211 340 DMNVEATVYNHDGEALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKAKPKDGELIKQQTLDFML 404 (478)
T ss_pred ceEEEEEEEcCCCCeeeeeeEEecCCceeEEEecccCCCceEEEEEEEEeCCCceeeeeeEEEEE
Confidence 66899999999999887543 22233344444 34799999888776541 1234455555
No 74
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.43 E-value=1.8e+02 Score=20.75 Aligned_cols=57 Identities=9% Similarity=-0.011 Sum_probs=28.5
Q ss_pred hceeeEEEEEeCCccceeceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCe
Q 031159 17 STSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS 76 (164)
Q Consensus 17 ~~~~a~~f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~ 76 (164)
...+.+.|...|.+- .....+.+..+++-=-|..|+.. +.+++..+.|.|+|....+
T Consensus 29 al~~n~~yF~tpsEv--~~~~~~~~~~~RlGG~V~~GSv~-r~~~~~~v~F~vtD~~~~v 85 (155)
T PRK13159 29 ALQRNMSYLFTPSQV--RAGAAAGYQQFRLGGMVKAGSIQ-RAADSLKVSFTVIDKNAAT 85 (155)
T ss_pred HhhhCceEEECHHHH--hcCCcccCCeEEEccEEecCcEE-EcCCCcEEEEEEEcCCcEE
Confidence 456666777776542 22223344444432223333211 1123568899999875553
No 75
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=31.31 E-value=48 Score=15.99 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHHH
Q 031159 2 IRLTLTLVLVIGIL 15 (164)
Q Consensus 2 ~~~~~~l~~~l~ll 15 (164)
++-.+++++.+++|
T Consensus 7 mKkil~~l~a~~~L 20 (25)
T PF08139_consen 7 MKKILFPLLALFML 20 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444434
No 76
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.99 E-value=2.1e+02 Score=20.75 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=10.2
Q ss_pred cCceeEEEEeccC
Q 031159 95 AGDYMACFWAVDH 107 (164)
Q Consensus 95 ~G~y~~Cf~n~~~ 107 (164)
.|+|.+.|....+
T Consensus 93 sG~y~V~~fDEeg 105 (167)
T PF05404_consen 93 SGTYEVKFFDEEG 105 (167)
T ss_pred CCceEEEEeChHH
Confidence 5999999887644
No 77
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=30.75 E-value=1.4e+02 Score=21.59 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=15.2
Q ss_pred EEEeCCccceeceeccCCcEEEEEEEEEcCC
Q 031159 24 FEIQSAHTKCIAEDIKSNSMTVGKYNVVNPN 54 (164)
Q Consensus 24 f~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~ 54 (164)
+.|.+..... ........+.|...+..|+
T Consensus 32 I~I~AD~~~~--~~~~~~~~~tGnV~i~QG~ 60 (180)
T PRK10894 32 IHIDSDQQSL--DMQGNVVTFTGNVVVTQGT 60 (180)
T ss_pred EEEEeCceEe--eccCCEEEEEeeEEEEECc
Confidence 5555543222 2223335677887776653
No 78
>PF14109 GldH_lipo: GldH lipoprotein
Probab=30.49 E-value=1.8e+02 Score=19.89 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=23.4
Q ss_pred ceEEEEEeCCCCCeEEeeec-cccceEE----EEeeccCceeEEEEeccC
Q 031159 63 HKLTVRVTSAYGNSYHYADR-VDSGQFA----FTAAEAGDYMACFWAVDH 107 (164)
Q Consensus 63 ~~i~~~v~dp~g~~l~~~~~-~~~g~~~----f~~~~~G~y~~Cf~n~~~ 107 (164)
..+.+.+.||+|+.+.+.-. ..+.++- +.-+.+|.|.+.+.--..
T Consensus 68 dtl~~~Lad~~G~w~G~G~~~~~e~~~~~~~~~~f~~~G~Y~~~i~q~Mr 117 (131)
T PF14109_consen 68 DTLECELADPDGKWLGKGIGDLYEYKLPYKENVRFPRKGSYTFTIEQAMR 117 (131)
T ss_pred eeEEEEEECCCCcEeeeeEeEeEEEEEEeecceecCCCCcEEEEEEeccc
Confidence 35666666677666543221 1222222 223467888877765443
No 79
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=30.48 E-value=28 Score=23.52 Aligned_cols=25 Identities=8% Similarity=0.349 Sum_probs=19.7
Q ss_pred hhhcCCccHHHHHHHHHHHHHHHHH
Q 031159 131 VAKKGSVDVMELELKKLYDTVSSIH 155 (164)
Q Consensus 131 ~a~~~~~~~l~~~l~~l~~~l~~I~ 155 (164)
++++++++.|+.+|..|..++..+.
T Consensus 92 ~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 92 IPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566888888888888888887764
No 80
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.37 E-value=52 Score=21.70 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=15.4
Q ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHH
Q 031159 132 AKKGSVDVMELELKKLYDTVSSIHQEMFY 160 (164)
Q Consensus 132 a~~~~~~~l~~~l~~l~~~l~~I~~eq~y 160 (164)
+++++++.++..+.+...+++.+..+...
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~ 60 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEH 60 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666655555555555555544433
No 81
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=30.37 E-value=31 Score=23.49 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=11.0
Q ss_pred ccCceeEEEEeccC
Q 031159 94 EAGDYMACFWAVDH 107 (164)
Q Consensus 94 ~~G~y~~Cf~n~~~ 107 (164)
-.|.|++||.-...
T Consensus 115 P~GsYRiCFrL~~~ 128 (145)
T TIGR02542 115 PEGSYRICFRLFNA 128 (145)
T ss_pred CCCceEEEEEEecc
Confidence 36999999986654
No 82
>PRK03641 hypothetical protein; Provisional
Probab=29.87 E-value=57 Score=24.56 Aligned_cols=15 Identities=7% Similarity=0.162 Sum_probs=10.3
Q ss_pred HhhceeeEEEEEeCC
Q 031159 15 LSSTSQSLRFEIQSA 29 (164)
Q Consensus 15 l~~~~~a~~f~i~~~ 29 (164)
+...+.|.++.+|++
T Consensus 14 ~s~~~~A~tL~~p~~ 28 (220)
T PRK03641 14 LPVSVFATTLKLSPD 28 (220)
T ss_pred HhhhhheEEEeCCCc
Confidence 345666788888775
No 83
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=29.46 E-value=1.6e+02 Score=18.82 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=39.2
Q ss_pred eccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEeccC
Q 031159 37 DIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDH 107 (164)
Q Consensus 37 ~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~ 107 (164)
++.+.+.|+|... .+|+ +.+ .--+.+.|+.|+-.-+-....+|+|.|-+ ..|...+=...+..
T Consensus 3 d~~ke~VItG~V~-~~G~---Pv~---gAyVRLLD~sgEFtaEvvts~~G~FRFfa-apG~WtvRal~~~g 65 (85)
T PF07210_consen 3 DVEKETVITGRVT-RDGE---PVG---GAYVRLLDSSGEFTAEVVTSATGDFRFFA-APGSWTVRALSRGG 65 (85)
T ss_pred CccceEEEEEEEe-cCCc---CCC---CeEEEEEcCCCCeEEEEEecCCccEEEEe-CCCceEEEEEccCC
Confidence 3455667777743 2332 222 44567889999875555566799999887 45666665554443
No 84
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.20 E-value=49 Score=21.38 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=11.8
Q ss_pred EEEEEeCCCCCeEE
Q 031159 65 LTVRVTSAYGNSYH 78 (164)
Q Consensus 65 i~~~v~dp~g~~l~ 78 (164)
-.+.++||+|+.+.
T Consensus 102 r~~~~~DPdGn~ie 115 (120)
T cd09011 102 RVVRFYDPDKHIIE 115 (120)
T ss_pred EEEEEECCCCCEEE
Confidence 57889999999874
No 85
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=28.97 E-value=62 Score=21.15 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=27.0
Q ss_pred EEEEEeecccccCchhhhhcCCccHHHHHHHHHHHHHHHHHHH
Q 031159 115 IDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQE 157 (164)
Q Consensus 115 V~f~~~~g~~~~d~~~~a~~~~~~~l~~~l~~l~~~l~~I~~e 157 (164)
+.+|..+|.-+....+ .-.-.++|+.+++++|++..+++.+.
T Consensus 12 Lv~D~~tG~va~~~~d-vi~~s~~pi~E~i~kLe~~addL~ns 53 (96)
T PRK00965 12 LVMDPDTGLIAEMRED-IIVVDMDPIEEEINKLEALADDLENS 53 (96)
T ss_pred eeeccccceeeeccCC-eEEEechHHHHHHHHHHHHHHHHHhc
Confidence 4455555644331111 11247899999999999999888764
No 86
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=28.86 E-value=99 Score=19.99 Aligned_cols=9 Identities=11% Similarity=-0.012 Sum_probs=4.9
Q ss_pred eEEEEEeCC
Q 031159 64 KLTVRVTSA 72 (164)
Q Consensus 64 ~i~~~v~dp 72 (164)
.+....+||
T Consensus 48 ~~~a~WfdP 56 (93)
T PF12904_consen 48 KVKAWWFDP 56 (93)
T ss_dssp EEEEEEEET
T ss_pred ceeEEEEcC
Confidence 455555555
No 87
>PRK10351 holo-(acyl carrier protein) synthase 2; Provisional
Probab=28.81 E-value=1.7e+02 Score=21.51 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=34.9
Q ss_pred eCCCCCeEEeeeccccceEEEEeeccCceeEEEEeccCCCCceEEEEEEEeecccccCchhhhh
Q 031159 70 TSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAK 133 (164)
Q Consensus 70 ~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~ 133 (164)
++++|++.... .....|..-.+|.|-+|.-... ..|.+|++.-....+|..+++
T Consensus 45 ~~~~GKP~l~~----~~~~~fSISHSg~~va~a~s~~------~~VGIDIE~i~~~~~~~~la~ 98 (187)
T PRK10351 45 YGEQGKPAFAP----ETPLWFNLSHSGDDIALLLSDE------GEVGCDIEVIRPRANWRSLAN 98 (187)
T ss_pred cCcCCCccccC----CCCCeEEEecccCcEEEEEEcC------CCeEEEEEEecCccCHHHHHH
Confidence 57889887642 2346688888999988875432 247777765444445655554
No 88
>PF08896 DUF1842: Domain of unknown function (DUF1842); InterPro: IPR014992 This domain is found at the N terminus of proteins that are functionally uncharacterised.
Probab=28.74 E-value=1.9e+02 Score=19.52 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=33.9
Q ss_pred EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEeeccCcee-EEEEec
Q 031159 43 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAAEAGDYM-ACFWAV 105 (164)
Q Consensus 43 ~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~--~~~~g~~~f~~~~~G~y~-~Cf~n~ 105 (164)
++.++|.|..+-.| +....+++.|.-|.+.+.-..+ ...+.-..|.+.-.|.|. +|+.+.
T Consensus 3 LF~v~y~i~~~~~G---ap~L~L~L~V~~~~~~VsG~a~ItQat~ppl~~~s~v~G~~~~~~~~~~ 65 (114)
T PF08896_consen 3 LFPVSYRIGTGLPG---APVLTLDLLVNTPDKSVSGRARITQATNPPLNFHSDVWGQYSYMGLMPP 65 (114)
T ss_pred eeEEEEEecCCCCC---CcEEEEEEEEeCCCCEEEeEEEEEEecCCCcceEEEeEEeEEEEEecCC
Confidence 45678888544332 1256888888888776643221 012233556666666663 476533
No 89
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=28.18 E-value=23 Score=13.93 Aligned_cols=8 Identities=13% Similarity=0.580 Sum_probs=5.1
Q ss_pred Cccceece
Q 031159 29 AHTKCIAE 36 (164)
Q Consensus 29 ~~~~Cf~e 36 (164)
+..+||+.
T Consensus 2 ~~~~CFWK 9 (12)
T PF02083_consen 2 GKSECFWK 9 (12)
T ss_pred Cccchhhh
Confidence 45678874
No 90
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=28.14 E-value=1.9e+02 Score=19.28 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=29.2
Q ss_pred eceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee
Q 031159 34 IAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA 80 (164)
Q Consensus 34 f~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~ 80 (164)
..-++..++.+.++|+|..+. + ..--+.+...|.++.++-..
T Consensus 39 ~gf~vv~d~~v~v~f~Vtr~~-~----~~a~C~VrA~~~d~aeVGrr 80 (112)
T PF14155_consen 39 IGFEVVDDSTVEVTFDVTRDP-G----RPAVCIVRALDYDGAEVGRR 80 (112)
T ss_pred EEEEECCCCEEEEEEEEEECC-C----CCEEEEEEEEeCCCCEEEEE
Confidence 334466778888899997542 1 13478888888888887754
No 91
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=27.43 E-value=2.4e+02 Score=20.32 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.9
Q ss_pred ccceEEEEeeccCceeEE
Q 031159 84 DSGQFAFTAAEAGDYMAC 101 (164)
Q Consensus 84 ~~g~~~f~~~~~G~y~~C 101 (164)
.+|+++|+....|.|.+=
T Consensus 191 ~~G~~~~~~~~~G~wli~ 208 (215)
T PF10670_consen 191 ANGRATFTLPRPGLWLIR 208 (215)
T ss_pred CCCEEEEecCCCEEEEEE
Confidence 578888888888888653
No 92
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=27.39 E-value=2.7e+02 Score=20.91 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=16.6
Q ss_pred cccceEEEEeeccCceeEEEEeccCC
Q 031159 83 VDSGQFAFTAAEAGDYMACFWAVDHS 108 (164)
Q Consensus 83 ~~~g~~~f~~~~~G~y~~Cf~n~~~~ 108 (164)
..+++|...-+ .+.|++=++|.-+.
T Consensus 66 ~~s~rF~Wqq~-p~~y~L~Ls~pLg~ 90 (206)
T COG3017 66 RGSARFFWQQQ-PDRYRLLLSNPLGS 90 (206)
T ss_pred cceEEEEEEEc-CCcEEEEEeccCCc
Confidence 34555555555 77888888888764
No 93
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=27.22 E-value=1.1e+02 Score=20.15 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=18.1
Q ss_pred eccCceeEEEEeccCCCCceEEEEEEEee
Q 031159 93 AEAGDYMACFWAVDHSPQTTVTIDFDWRT 121 (164)
Q Consensus 93 ~~~G~y~~Cf~n~~~~~~~~~~V~f~~~~ 121 (164)
.+.|.|.+=..|+.. ...+.|++.+
T Consensus 75 ~E~G~YTf~a~N~~~----~~s~tF~l~v 99 (101)
T cd05860 75 TEGGTYTFLVSNSDA----SASVTFNVYV 99 (101)
T ss_pred hhCcEEEEEEECCCC----eEEEEEEEEE
Confidence 567999998888864 3667776653
No 94
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=27.20 E-value=1.5e+02 Score=17.92 Aligned_cols=41 Identities=15% Similarity=0.034 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecc
Q 031159 64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD 106 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~ 106 (164)
.+=+.|+|.+|+++++..-.+...++| .....+++=+-|..
T Consensus 8 ~sWv~V~d~dG~~~~~~~l~~G~~~~~--~~~~~~~i~iGna~ 48 (77)
T PF13464_consen 8 DSWVEVTDADGKVLFSGTLKAGETKTF--EGKEPFRIRIGNAG 48 (77)
T ss_pred CeEEEEEeCCCcEeeeeeeCCCcEEEE--eCCCCEEEEEeCCC
Confidence 567889999999999765555555666 34445555555543
No 95
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=26.92 E-value=86 Score=16.56 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=11.5
Q ss_pred hhHH-HHHHHHHHHh-hceeeEEEEEeC
Q 031159 3 RLTL-TLVLVIGILS-STSQSLRFEIQS 28 (164)
Q Consensus 3 ~~~~-~l~~~l~ll~-~~~~a~~f~i~~ 28 (164)
-+++ +++++|+++. .++.+=++.|..
T Consensus 3 ~l~~a~~l~lLal~~a~~~~pG~ViING 30 (36)
T PF08194_consen 3 CLSLAFALLLLALAAAVPATPGNVIING 30 (36)
T ss_pred eeHHHHHHHHHHHHhcccCCCCeEEECc
Confidence 3444 3344444432 334454555554
No 96
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=26.90 E-value=73 Score=20.88 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHHH
Q 031159 135 GSVDVMELELKKLYDTVSSIHQE 157 (164)
Q Consensus 135 ~~~~~l~~~l~~l~~~l~~I~~e 157 (164)
-.++|+.+++.+|+...+++.+.
T Consensus 30 ~s~~pi~eqi~kLe~~addl~ns 52 (97)
T PF05440_consen 30 VSMDPINEQIDKLEKAADDLVNS 52 (97)
T ss_pred EechHHHHHHHHHHHHHHHHHhc
Confidence 37899999999999999988764
No 97
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.88 E-value=55 Score=21.15 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=12.1
Q ss_pred eEEEEEeCCCCCeEE
Q 031159 64 KLTVRVTSAYGNSYH 78 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~ 78 (164)
.-.+.++||+|+.+.
T Consensus 96 ~r~f~~~DPdGn~~~ 110 (113)
T cd08356 96 GREFFLHDPSGVLWH 110 (113)
T ss_pred cEEEEEECCCccEEE
Confidence 356899999999864
No 98
>PHA02102 hypothetical protein
Probab=26.50 E-value=55 Score=19.64 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=19.5
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhh
Q 031159 136 SVDVMELELKKLYDTVSSIHQEMFYLR 162 (164)
Q Consensus 136 ~~~~l~~~l~~l~~~l~~I~~eq~y~r 162 (164)
.+..--.+|++|-..++++-.+|+|-.
T Consensus 6 eLvekA~eLqkLl~eV~dlAse~~yGv 32 (72)
T PHA02102 6 ELVEKALELQKLLKEVKDLASEQDYGV 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccce
Confidence 344445677888888888888998853
No 99
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=26.04 E-value=87 Score=20.96 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=26.5
Q ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031159 132 AKKGSVDVMELELKKLYDTVSSIHQEMFYLRE 163 (164)
Q Consensus 132 a~~~~~~~l~~~l~~l~~~l~~I~~eq~y~r~ 163 (164)
|-.|+++-|..+|+.|.++...+.+|-..+|.
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44588899999999999999999888777663
No 100
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=25.73 E-value=2.1e+02 Score=19.16 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=29.1
Q ss_pred eceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCC-CCeEEe
Q 031159 34 IAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAY-GNSYHY 79 (164)
Q Consensus 34 f~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~-g~~l~~ 79 (164)
|.-.+..++.++++.++..... ....+.+.+++++ |+++..
T Consensus 77 f~~PV~~gdtl~~~~~v~~~~~-----~~~~~~~~~~nq~~g~~V~~ 118 (126)
T cd03447 77 FVGMVLPNDELEVRLEHVGMVD-----GRKVIKVEARNEETGELVLR 118 (126)
T ss_pred EcccCcCCCEEEEEEEEEEEeC-----CeEEEEEEEEECCCCCEEEE
Confidence 7777888999998888875321 1347777888887 776654
No 101
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=25.36 E-value=1.2e+02 Score=17.73 Aligned_cols=17 Identities=6% Similarity=0.188 Sum_probs=12.5
Q ss_pred HHhhceeeEEEEEeCCc
Q 031159 14 ILSSTSQSLRFEIQSAH 30 (164)
Q Consensus 14 ll~~~~~a~~f~i~~~~ 30 (164)
++...+.|=.+..+|+.
T Consensus 13 ~~~~~a~AQWvV~DP~N 29 (55)
T PF13605_consen 13 LLAGPARAQWVVTDPGN 29 (55)
T ss_pred hcCCcceeEEEEeCchH
Confidence 55677888888888763
No 102
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=24.69 E-value=1.5e+02 Score=24.56 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=29.5
Q ss_pred EEeCCCCCeEEeeeccccceEEEE--e-------eccCceeEEEEeccCC---CCceEEEEE
Q 031159 68 RVTSAYGNSYHYADRVDSGQFAFT--A-------AEAGDYMACFWAVDHS---PQTTVTIDF 117 (164)
Q Consensus 68 ~v~dp~g~~l~~~~~~~~g~~~f~--~-------~~~G~y~~Cf~n~~~~---~~~~~~V~f 117 (164)
.+.+.++-.++.++.++.-.|.+. . .+.|.|.-||+.+.++ ....++|.+
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~ 435 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKM 435 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEE
Confidence 334444445555665555566655 2 2458899999999875 234455543
No 103
>PHA02665 hypothetical protein; Provisional
Probab=24.49 E-value=51 Score=24.95 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=25.5
Q ss_pred EEeCCccceeceeccCCcEEEEEEEEEcCC
Q 031159 25 EIQSAHTKCIAEDIKSNSMTVGKYNVVNPN 54 (164)
Q Consensus 25 ~i~~~~~~Cf~e~v~~~~~v~~~y~v~~~~ 54 (164)
..+|++++|.+..+..+.-....|.|.+|+
T Consensus 24 v~ep~kkkc~ftkirt~~s~a~ry~vsdg~ 53 (322)
T PHA02665 24 VFEPGKKKCVFTKIRTSSSLACRYAVSDGG 53 (322)
T ss_pred ccccccceeEEEEEecchhhhheeeeccCc
Confidence 357899999999999888888899998775
No 104
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=24.23 E-value=1.3e+02 Score=22.72 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=11.9
Q ss_pred HhhceeeEEEEEeCCccc
Q 031159 15 LSSTSQSLRFEIQSAHTK 32 (164)
Q Consensus 15 l~~~~~a~~f~i~~~~~~ 32 (164)
+++...+.+|.+-..+..
T Consensus 171 l~gGGa~yYfK~~K~K~~ 188 (218)
T PF14283_consen 171 LIGGGAYYYFKFYKPKQE 188 (218)
T ss_pred HhhcceEEEEEEeccccc
Confidence 445677788887776544
No 105
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=24.13 E-value=1e+02 Score=22.51 Aligned_cols=31 Identities=10% Similarity=0.278 Sum_probs=19.0
Q ss_pred ChhhHHHHHHHHHHHhhceeeEEEEEeCCcc
Q 031159 1 MIRLTLTLVLVIGILSSTSQSLRFEIQSAHT 31 (164)
Q Consensus 1 ~~~~~~~l~~~l~ll~~~~~a~~f~i~~~~~ 31 (164)
|-++.+..+++|++.+..++|..+.+..+..
T Consensus 1 m~k~~~a~~~~l~~~s~~a~A~~~~~~~g~~ 31 (180)
T PF07437_consen 1 MKKFLLASAAALLLVSASANAISLSLNLGND 31 (180)
T ss_pred CchHHHHHHHHHHHHhhhhheeecceeccCc
Confidence 3344444444445556778888888877754
No 106
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=23.97 E-value=1.4e+02 Score=17.62 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=17.5
Q ss_pred eccCceeEEEEeccCCCCceEEEEEEE
Q 031159 93 AEAGDYMACFWAVDHSPQTTVTIDFDW 119 (164)
Q Consensus 93 ~~~G~y~~Cf~n~~~~~~~~~~V~f~~ 119 (164)
...|.|..+..|.... ......|.+
T Consensus 44 ~D~G~YtC~a~N~~G~--~~~~~t~~l 68 (70)
T cd05864 44 KDAGNYTVVLTNPITK--EEQRHTFQL 68 (70)
T ss_pred HHCEEEEEEEEECCCc--eeeEEEEEE
Confidence 3469999999999863 445555554
No 107
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=23.92 E-value=2e+02 Score=18.25 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEeeccCce--eEEEEeccCC--------CCceEEEEEEEe
Q 031159 90 FTAAEAGDY--MACFWAVDHS--------PQTTVTIDFDWR 120 (164)
Q Consensus 90 f~~~~~G~y--~~Cf~n~~~~--------~~~~~~V~f~~~ 120 (164)
|-....+.| ++||+--... .+...+|+|+++
T Consensus 26 ~Vlet~~qYP~~i~f~~~~dk~~~l~~~~~Gd~V~Vsf~i~ 66 (84)
T PF11325_consen 26 FVLETEEQYPQKICFEFWGDKIDLLDNFQVGDEVKVSFNIE 66 (84)
T ss_pred EEEeCCCcCCceEEEEEEcchhhhhccCCCCCEEEEEEEee
Confidence 444466777 7888754332 256799999986
No 108
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.85 E-value=1.1e+02 Score=18.19 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=22.0
Q ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 031159 132 AKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164 (164)
Q Consensus 132 a~~~~~~~l~~~l~~l~~~l~~I~~eq~y~r~R 164 (164)
+...++...+.....|...|..++.+..=+|.|
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 445666777777777777777777777666654
No 109
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.73 E-value=1.6e+02 Score=17.76 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh
Q 031159 137 VDVMELELKKLYDTVSSIHQEMFYLR 162 (164)
Q Consensus 137 ~~~l~~~l~~l~~~l~~I~~eq~y~r 162 (164)
....+..+..+.++++.|...+.|+.
T Consensus 29 ~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 29 DAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888764
No 110
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=23.59 E-value=5e+02 Score=22.68 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=41.3
Q ss_pred EEEEeCCccceeceeccC----CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEe-----e
Q 031159 23 RFEIQSAHTKCIAEDIKS----NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTA-----A 93 (164)
Q Consensus 23 ~f~i~~~~~~Cf~e~v~~----~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l~~~~~~~~g~~~f~~-----~ 93 (164)
.+++|++...|-|--.+. .-.-+|-|.|.=.. +.+..--+.+..|.+..-. ........|.+ .
T Consensus 14 ~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s-----~rdY~Tf~Wa~~p~~~~~~---s~~~~~V~F~ayyLPk~ 85 (546)
T PF07888_consen 14 KSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSS-----TRDYYTFVWAPVPENYVEG---SAVNCQVQFQAYYLPKD 85 (546)
T ss_pred cccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCc-----hhheeeEEeeccCccccCC---CccceEEEECcccCCCC
Confidence 468888888898866443 24566777774211 1122333445555442211 11122344444 2
Q ss_pred ccCceeEEEEeccC
Q 031159 94 EAGDYMACFWAVDH 107 (164)
Q Consensus 94 ~~G~y~~Cf~n~~~ 107 (164)
....|.||..+...
T Consensus 86 ~~e~YqfcYv~~~g 99 (546)
T PF07888_consen 86 DDEFYQFCYVDQKG 99 (546)
T ss_pred CCCeEEEEEECCCc
Confidence 35678999887765
No 111
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=23.19 E-value=74 Score=20.56 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=11.8
Q ss_pred eEEEEEeCCCCCeEE
Q 031159 64 KLTVRVTSAYGNSYH 78 (164)
Q Consensus 64 ~i~~~v~dp~g~~l~ 78 (164)
.-.+.++||+|+.+.
T Consensus 101 ~~~~~~~DPdG~~ie 115 (120)
T cd08350 101 MREFALVDPDGNLLR 115 (120)
T ss_pred eeEEEEECCCCCEEE
Confidence 346889999999764
No 112
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=23.10 E-value=2e+02 Score=17.91 Aligned_cols=18 Identities=0% Similarity=-0.062 Sum_probs=7.9
Q ss_pred eeceeccCCcEEEEEEEE
Q 031159 33 CIAEDIKSNSMTVGKYNV 50 (164)
Q Consensus 33 Cf~e~v~~~~~v~~~y~v 50 (164)
+..-.|++++.+...+.+
T Consensus 48 ~~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 48 PWTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CEEEEECCCCEEEEEEee
Confidence 444444444444444433
No 113
>PF15240 Pro-rich: Proline-rich
Probab=23.06 E-value=41 Score=24.61 Aligned_cols=6 Identities=50% Similarity=0.468 Sum_probs=2.6
Q ss_pred hceeeE
Q 031159 17 STSQSL 22 (164)
Q Consensus 17 ~~~~a~ 22 (164)
+.|+..
T Consensus 14 SSAQ~~ 19 (179)
T PF15240_consen 14 SSAQST 19 (179)
T ss_pred hhcccc
Confidence 444443
No 114
>PF03512 Glyco_hydro_52: Glycosyl hydrolase family 52; InterPro: IPR000852 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 52 GH52 from CAZY comprises enzymes with only one known activity; beta-xylosidase (3.2.1.37 from EC). Proteins harboring beta-xylosidase and xylanase activities []have been identified in the Gram-positive, facultative thermophilic aerobe Bacillus stearothermophilus 21 []. This microbe, which functions in xylan degradation, can utilise xylan as a sole source of carbon. The enzyme hydrolyses 1,4-beta-D-xylans, removing successive D-xylose residues from the non-reducing termini. It also hydrolyses xylobiose.; GO: 0009044 xylan 1,4-beta-xylosidase activity, 0005975 carbohydrate metabolic process
Probab=22.53 E-value=57 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=23.6
Q ss_pred hhceeeEEEEEeCCccc------eeceeccCCcEEEEEE
Q 031159 16 SSTSQSLRFEIQSAHTK------CIAEDIKSNSMTVGKY 48 (164)
Q Consensus 16 ~~~~~a~~f~i~~~~~~------Cf~e~v~~~~~v~~~y 48 (164)
+....++.+++|||+++ |||..-...+.+..+|
T Consensus 212 Lg~~gaL~~~VpaGE~~t~~~al~fY~~G~vT~g~~~sy 250 (428)
T PF03512_consen 212 LGPTGALLFDVPAGEKRTYRFALCFYRGGIVTTGLDTSY 250 (428)
T ss_pred cCccceEEEEeCCCceEEEEEEEEEeecCeEecCcccce
Confidence 46788999999999987 8887644444444444
No 115
>PF13584 BatD: Oxygen tolerance
Probab=22.47 E-value=4.4e+02 Score=22.03 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=31.3
Q ss_pred eccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCe---EEee--eccccceEEEEeeccCceeE
Q 031159 37 DIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS---YHYA--DRVDSGQFAFTAAEAGDYMA 100 (164)
Q Consensus 37 ~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~---l~~~--~~~~~g~~~f~~~~~G~y~~ 100 (164)
.+..++.+.+.+.+.+.+.....|+-. +|.|.+|.-.. +... .....-.|.+.+...|.|.+
T Consensus 23 ~v~~ge~~~l~i~~~~~~~~~~~p~l~--~f~v~~~~~s~~~~~inG~~~~~~~~~~~l~p~~~G~~~I 89 (484)
T PF13584_consen 23 EVGLGETFQLTITINGDGDDPDLPELD--GFEVLGPSQSSSTSIINGKVSSSTTYTYTLQPKKTGTFTI 89 (484)
T ss_pred EEcCCCEEEEEEEEecCcccCCCCCCC--CeEEcceEEEEEEEEecCceEEEEEEEEEEEecccceEEE
Confidence 378889888888886532211122111 22333332111 1111 12234566777777888877
No 116
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=22.20 E-value=72 Score=20.52 Aligned_cols=13 Identities=23% Similarity=0.061 Sum_probs=10.4
Q ss_pred EEEEEeCCCCCeE
Q 031159 65 LTVRVTSAYGNSY 77 (164)
Q Consensus 65 i~~~v~dp~g~~l 77 (164)
-.+.++||+|+.+
T Consensus 106 ~~~~~~DPdG~~i 118 (122)
T cd07235 106 RYAIVKDPDGNLV 118 (122)
T ss_pred EEEEEECCCCCEE
Confidence 3468999999975
No 117
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=22.19 E-value=1.1e+02 Score=24.29 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=24.3
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031159 135 GSVDVMELELKKLYDTVSSIHQEMFYLRE 163 (164)
Q Consensus 135 ~~~~~l~~~l~~l~~~l~~I~~eq~y~r~ 163 (164)
.++..|+.+=++|.+++..+++|..|+|.
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888899999999999999984
No 118
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=22.03 E-value=74 Score=20.29 Aligned_cols=13 Identities=23% Similarity=0.210 Sum_probs=10.8
Q ss_pred EEEEeCCCCCeEE
Q 031159 66 TVRVTSAYGNSYH 78 (164)
Q Consensus 66 ~~~v~dp~g~~l~ 78 (164)
.+.+.||+|+.+.
T Consensus 93 ~~~~~DP~Gn~ie 105 (112)
T cd08344 93 GVWFRDPDGNLLQ 105 (112)
T ss_pred EEEEECCCCCEEE
Confidence 5789999999764
No 119
>PRK04517 hypothetical protein; Provisional
Probab=21.99 E-value=95 Score=23.30 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=9.5
Q ss_pred Hhhceee-EEEEEeCC
Q 031159 15 LSSTSQS-LRFEIQSA 29 (164)
Q Consensus 15 l~~~~~a-~~f~i~~~ 29 (164)
++..+.| .++.+|++
T Consensus 15 ~s~~a~A~vtL~~p~~ 30 (216)
T PRK04517 15 FSGSASADVTMEVPDD 30 (216)
T ss_pred hhhhhhheEEEeCCCc
Confidence 3445555 77877775
No 120
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.97 E-value=2.3e+02 Score=18.15 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=18.6
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHh
Q 031159 134 KGSVDVMELELKKLYDTVSSIHQEMFYL 161 (164)
Q Consensus 134 ~~~~~~l~~~l~~l~~~l~~I~~eq~y~ 161 (164)
.+.+..++.+++.+++.+..+..+..=+
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777776665543
No 121
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=21.92 E-value=1.2e+02 Score=17.86 Aligned_cols=25 Identities=16% Similarity=0.318 Sum_probs=17.6
Q ss_pred eccCceeEEEEeccCCCCceEEEEEEE
Q 031159 93 AEAGDYMACFWAVDHSPQTTVTIDFDW 119 (164)
Q Consensus 93 ~~~G~y~~Cf~n~~~~~~~~~~V~f~~ 119 (164)
...|.|..+..|.... ....++|.+
T Consensus 45 ~D~G~YtC~a~N~~g~--~~~~~~~~~ 69 (71)
T cd04976 45 EDAGNYTVVLTNKQAK--LEKRLTFTL 69 (71)
T ss_pred HHCEEEEEEEEcCCcc--EEEEEEEEE
Confidence 4469999999997753 456666654
No 122
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=21.88 E-value=3.9e+02 Score=20.85 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=18.9
Q ss_pred CceEEEEEeCCCCCeEEeeeccccc
Q 031159 62 SHKLTVRVTSAYGNSYHYADRVDSG 86 (164)
Q Consensus 62 ~~~i~~~v~dp~g~~l~~~~~~~~g 86 (164)
..+|-+.|.+|...+...++...-|
T Consensus 68 ~~dVVV~v~GP~~~v~vRrK~R~~G 92 (261)
T TIGR02186 68 AYDIVVTLEGPRDDMVVRKKERVFG 92 (261)
T ss_pred CccEEEEEeCCCCCeEEEEeeeeee
Confidence 4599999999999987765544444
No 123
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=21.88 E-value=30 Score=20.90 Aligned_cols=14 Identities=29% Similarity=0.588 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHH
Q 031159 2 IRLTLTLVLVIGIL 15 (164)
Q Consensus 2 ~~~~~~l~~~l~ll 15 (164)
|+|+..|+++++||
T Consensus 1 mKLt~vliVavLll 14 (75)
T PF02950_consen 1 MKLTCVLIVAVLLL 14 (75)
T ss_dssp --------------
T ss_pred CCcchHHHHHHHHH
Confidence 45555554444444
No 124
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=21.88 E-value=1.3e+02 Score=18.56 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=13.0
Q ss_pred eccCceeEEEEeccCC
Q 031159 93 AEAGDYMACFWAVDHS 108 (164)
Q Consensus 93 ~~~G~y~~Cf~n~~~~ 108 (164)
...|.|..+..|....
T Consensus 62 ~D~G~Y~c~a~N~~G~ 77 (86)
T cd05894 62 EDEGVYTITVTNPVGE 77 (86)
T ss_pred CcCEEEEEEEEeCCCc
Confidence 4469999999999863
No 125
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=21.73 E-value=1.8e+02 Score=16.82 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=25.2
Q ss_pred eceeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeE
Q 031159 34 IAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSY 77 (164)
Q Consensus 34 f~e~v~~~~~v~~~y~v~~~~~~~~~~~~~~i~~~v~dp~g~~l 77 (164)
|...++.++.+.+.-.+..-+. ....+.+.+++.++.++
T Consensus 40 f~~p~~~gd~l~~~~~v~~~g~-----~~~~~~~~v~~~~~~~~ 78 (79)
T PF03061_consen 40 FLRPVRPGDTLRVEARVVRVGR-----KSFTVEVEVYSEDGRLC 78 (79)
T ss_dssp ESS-BBTTSEEEEEEEEEEEES-----SEEEEEEEEEETTSCEE
T ss_pred EccccCCCeEEEEEEEEEEECC-----EEEEEEEEEEECCCcEE
Confidence 5556777888888777764321 14577778887777654
No 126
>PRK10386 curli assembly protein CsgE; Provisional
Probab=21.23 E-value=90 Score=21.62 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031159 139 VMELELKKLYDTVSSIHQEMFYL 161 (164)
Q Consensus 139 ~l~~~l~~l~~~l~~I~~eq~y~ 161 (164)
..+..+....+.+.+.+.+..|+
T Consensus 98 ~A~~Ai~~v~~~l~q~~~~~~~~ 120 (130)
T PRK10386 98 TVVFALDQTEEALNRRQIDQALL 120 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666677777776666553
No 127
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=21.05 E-value=1.6e+02 Score=19.19 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=14.8
Q ss_pred HHHHHHHhhceeeEEEEEeCCcc
Q 031159 9 VLVIGILSSTSQSLRFEIQSAHT 31 (164)
Q Consensus 9 ~~~l~ll~~~~~a~~f~i~~~~~ 31 (164)
++.++|+++....-+|.+.+...
T Consensus 7 ~~~lallLtgCatqt~~~~~~~~ 29 (97)
T PF06291_consen 7 AAALALLLTGCATQTFTVGNQPT 29 (97)
T ss_pred HHHHHHHHcccceeEEEeCCCCc
Confidence 33445556788888888876443
No 128
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.02 E-value=87 Score=19.81 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=10.2
Q ss_pred EEEEEeCCCCCeE
Q 031159 65 LTVRVTSAYGNSY 77 (164)
Q Consensus 65 i~~~v~dp~g~~l 77 (164)
-.+.++||+|+.+
T Consensus 98 ~~~~~~DPdGn~i 110 (114)
T cd07261 98 YTFVALDPDGHRL 110 (114)
T ss_pred cEEEEECCCCCEE
Confidence 3578899999875
No 129
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.00 E-value=1.6e+02 Score=19.62 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=17.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh
Q 031159 137 VDVMELELKKLYDTVSSIHQEMFYLR 162 (164)
Q Consensus 137 ~~~l~~~l~~l~~~l~~I~~eq~y~r 162 (164)
+.+++.++.+|...+..++.|.++++
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLK 98 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLK 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777665
No 130
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=20.90 E-value=2.4e+02 Score=18.40 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=6.9
Q ss_pred EEEeCCCCCeEEe
Q 031159 67 VRVTSAYGNSYHY 79 (164)
Q Consensus 67 ~~v~dp~g~~l~~ 79 (164)
+.++|++|.++++
T Consensus 67 Lvl~~~~g~~vW~ 79 (116)
T cd00028 67 LVIYDGSGTVVWS 79 (116)
T ss_pred eEEEcCCCcEEEE
Confidence 4455555555554
No 131
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=20.88 E-value=1.2e+02 Score=22.20 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 031159 138 DVMELELKKLYDTVSSIHQEMF 159 (164)
Q Consensus 138 ~~l~~~l~~l~~~l~~I~~eq~ 159 (164)
..+|++++.|+.+++++...|.
T Consensus 155 ~~LE~kv~~LE~qvr~L~~R~~ 176 (177)
T PF14965_consen 155 ASLEAKVRHLERQVRELNIRQR 176 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHhc
Confidence 6789999999999998887764
No 132
>PRK10905 cell division protein DamX; Validated
Probab=20.73 E-value=71 Score=25.66 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=9.2
Q ss_pred ChhhHHHHHHHHHH
Q 031159 1 MIRLTLTLVLVIGI 14 (164)
Q Consensus 1 ~~~~~~~l~~~l~l 14 (164)
||++=+|+||||.+
T Consensus 1 MiGiGilVLlLLIi 14 (328)
T PRK10905 1 MMGVGILVLLLLII 14 (328)
T ss_pred CcchhHHHHHHHHH
Confidence 88887766665544
No 133
>PLN00115 pollen allergen group 3; Provisional
Probab=20.38 E-value=1.8e+02 Score=19.77 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=17.2
Q ss_pred ChhhHHHHHH-HH-HHHhh--ceeeEEEEEeCCc
Q 031159 1 MIRLTLTLVL-VI-GILSS--TSQSLRFEIQSAH 30 (164)
Q Consensus 1 ~~~~~~~l~~-~l-~ll~~--~~~a~~f~i~~~~ 30 (164)
|...+.+|++ .| +|++. ....++|+|..|.
T Consensus 1 ~~~~~~~~~~~~~a~l~~~~~~g~~v~F~V~~gS 34 (118)
T PLN00115 1 MSSLSFLLLAVALAALFAVGSCATEVTFKVGKGS 34 (118)
T ss_pred CchhHHHHHHHHHHHHhhhhhcCCceEEEECCCC
Confidence 4445443332 22 34443 2457999999987
No 134
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.16 E-value=1.8e+02 Score=16.22 Aligned_cols=25 Identities=8% Similarity=0.291 Sum_probs=16.9
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHH
Q 031159 134 KGSVDVMELELKKLYDTVSSIHQEM 158 (164)
Q Consensus 134 ~~~~~~l~~~l~~l~~~l~~I~~eq 158 (164)
.++-+.+|.+|..+..++.++..-.
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR 35 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKR 35 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHH
Confidence 4778888999999988888776543
No 135
>PF14977 FAM194: FAM194 protein
Probab=20.16 E-value=3.9e+02 Score=20.09 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=12.1
Q ss_pred ceeceeccCCcEEEEEEEEE
Q 031159 32 KCIAEDIKSNSMTVGKYNVV 51 (164)
Q Consensus 32 ~Cf~e~v~~~~~v~~~y~v~ 51 (164)
-|++|+.+.+. +.+.|.-.
T Consensus 49 ~~v~eD~~~~~-ilA~Fd~~ 67 (208)
T PF14977_consen 49 YIVYEDSPENT-ILALFDSS 67 (208)
T ss_pred EEEEecCCCCc-eEEEEcCC
Confidence 46777777766 66665543
No 136
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=20.06 E-value=2.5e+02 Score=17.98 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=29.2
Q ss_pred eEEEEEeC-CCCCeEEeeeccccceEEEEeeccCceeEE
Q 031159 64 KLTVRVTS-AYGNSYHYADRVDSGQFAFTAAEAGDYMAC 101 (164)
Q Consensus 64 ~i~~~v~d-p~g~~l~~~~~~~~g~~~f~~~~~G~y~~C 101 (164)
.+.|.+++ .+|+++.+...-.+|...|.......+-+.
T Consensus 30 ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~~~~~~viA 68 (97)
T PF11974_consen 30 GAEVELYDSRNGQVLASGKTDADGFASFDSTKKPFLVIA 68 (97)
T ss_pred CCEEEEEECCCCcEeeeeeeCCCceEEecCCCCCEEEEE
Confidence 67888899 899999988777789999988744444333
Done!