BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031160
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 33 PEEKPRLCDDACEKELENV---PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPS 89
PE+ +D E E + +VTTESGL+Y+D+ G G G V+ +Y +
Sbjct: 76 PEDLDMEDNDIIEAHREQIGGSTIVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD 135
Query: 90 GQIFDSSLEKGRPYIFRVGSGQV 112
GQ FDSS ++ P+ F +G G V
Sbjct: 136 GQKFDSSKDRNDPFAFVLGGGMV 158
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 33 PEEKPRLCDDACEKELENV---PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPS 89
PE+ +D E E + +VTTESGL+Y+D+ G G G V+ +Y +
Sbjct: 76 PEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD 135
Query: 90 GQIFDSSLEKGRPYIFRVGSGQV 112
GQ FDSS ++ P+ F +G G V
Sbjct: 136 GQKFDSSKDRNDPFAFVLGGGMV 158
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 33 PEEKPRLCDDACEKELENV---PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPS 89
PE+ +D E E + +VTTESGL+Y+D+ G G G V+ +Y +
Sbjct: 76 PEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD 135
Query: 90 GQIFDSSLEKGRPYIFRVGSGQV 112
GQ FDSS ++ P+ F +G G V
Sbjct: 136 GQKFDSSKDRNDPFAFVLGGGMV 158
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 33 PEEKPRLCDDACEKELENV---PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPS 89
PE+ +D E E + +VTTESGL+Y+D+ G G G V+ +Y +
Sbjct: 76 PEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD 135
Query: 90 GQIFDSSLEKGRPYIFRVGSGQV 112
GQ FDSS ++ P+ F +G G V
Sbjct: 136 GQKFDSSKDRNDPFEFVLGGGMV 158
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 53 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G V
Sbjct: 3 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHV 62
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 53 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G V
Sbjct: 3 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 62
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 50 NVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS 109
++ +VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G
Sbjct: 20 HMTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGG 79
Query: 110 GQV 112
G V
Sbjct: 80 GMV 82
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 50 NVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS 109
++ +VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G
Sbjct: 4 SMTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGG 63
Query: 110 GQV 112
G V
Sbjct: 64 GMV 66
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 33 PEEKPRLCDDACEKELENV---PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPS 89
PE+ +D E E + +VTTESGL+Y+D+ G G G V+ +Y +
Sbjct: 76 PEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD 135
Query: 90 GQIFDSSLEKGRPYIFRVGSGQV 112
GQ F SS ++ P+ F +G G V
Sbjct: 136 GQKFGSSKDRNDPFAFVLGGGMV 158
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 47 ELENVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFR 106
E + + SGL + D VG GP G + A+YV + +G++FDSS +G+P FR
Sbjct: 1 ETTSCEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFR 60
Query: 107 VGSGQV 112
+G G+V
Sbjct: 61 IGVGEV 66
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV
Sbjct: 39 RVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQV 86
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV
Sbjct: 39 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 86
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 35 EKPRLCDDACEKELENVP-MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIF 93
++ ++ +A E +N P +V SGLQYK I G G P V Y + G +F
Sbjct: 82 DENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVF 141
Query: 94 DSSLEKGRPYIFRV 107
DS+ + G+P F+V
Sbjct: 142 DSTEKTGKPATFQV 155
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 38 RLCDDACEKELENVP-MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSS 96
++ +A E +N P +V SGLQYK I G G P V Y + G +FDS+
Sbjct: 9 KVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDST 68
Query: 97 LEKGRPYIFRV 107
+ G+P F+V
Sbjct: 69 EKTGKPATFQV 79
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV
Sbjct: 43 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV
Sbjct: 43 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV
Sbjct: 43 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 90
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV
Sbjct: 27 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 74
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV
Sbjct: 27 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQV 74
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 48 LENVPMVTTESGLQYKDIKVGQG---PSPPVGFQVAANYVAMIPS-GQIFDSSLEKGRPY 103
LE V + T + G+ ++ G+G +P G +V +YV + S G++FDSS E+ P+
Sbjct: 6 LEQVHL-TEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPF 64
Query: 104 IFRVGSGQV 112
F +G G+V
Sbjct: 65 KFHLGQGEV 73
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 55 TTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRV 107
T+ +GL Y+ ++ G+G +P V NY + G+ FD+S +G P FR+
Sbjct: 118 TSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL 170
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPSPPVGFQVAA-NYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + G + P QVA +Y + G++FDSS +G+P+ F VG G+V
Sbjct: 2 GVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEV 56
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 55 TTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRV 107
T+ +GL Y+ ++ G+G +P V NY + G+ FD+S +G P FR+
Sbjct: 118 TSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL 170
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 60 LQYKDIKVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
L+ K + G G + P G +V +Y P G+ FDSS +G+P+ F +G+G+V
Sbjct: 26 LEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEV 79
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G++ + I G G + P G +Y M+ +G+ FDSS ++ +P+ FR+G +V
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEV 55
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 58 SGLQYKDIKVGQGP-SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFR 106
SGL ++ I G G +P + + +Y + G +FDSS E+G+P FR
Sbjct: 37 SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR 86
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 57 ESGLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
E ++ I G G + P G V +Y + +GQ FDSS+++G P+ +G GQV
Sbjct: 5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 66 KVGQGP-SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
K GQG P G V +YV + +G FDSS ++G + F +G G V
Sbjct: 22 KEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNV 69
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+P VG +V +Y + G+ FDSS ++ + F++G GQV
Sbjct: 26 TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQV 66
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+P VG +V +Y + G+ FDSS ++ + F++G GQV
Sbjct: 42 TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQV 82
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 43 ACEKELENVPMVTTESGLQYKDIKVG-QGPS--PPVGFQVAANYVAMIPS-GQIFDSSLE 98
E+E E V + T + G+ +K G +G P G +V +YV + S G++FDSS +
Sbjct: 2 TTEQEFEKVEL-TADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD 60
Query: 99 KGRPYIFRVGSGQV 112
+ P+ F + G+V
Sbjct: 61 RNVPFKFHLEQGEV 74
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 43 ACEKELENVPMVTTESGLQYKDIKVG-QGPS--PPVGFQVAANYVAMIPS-GQIFDSSLE 98
E+E E V + T + G+ +K G +G P G +V +YV + S G++FDSS +
Sbjct: 2 TTEQEFEKVEL-TADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD 60
Query: 99 KGRPYIFRVGSGQV 112
+ P+ F + G+V
Sbjct: 61 RNVPFKFHLEQGEV 74
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ FDSS +K +P+ F +G +V
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEV 55
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEV 55
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 59 GLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS 109
G+ ++ G GP P +V YV +P G+IFD S + P FR+ S
Sbjct: 118 GILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS 165
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V
Sbjct: 3 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEV 57
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEV 55
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEV 55
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEV 55
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEV 55
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEV 55
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEV 55
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 82 NYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+Y + G FDSSL + +P++F +G+GQV
Sbjct: 15 HYTGKLEDGTEFDSSLPQNQPFVFSLGTGQV 45
>pdb|1NKG|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus
Length = 508
Score = 33.5 bits (75), Expect = 0.051, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 66 KVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILA 118
K+G+ P GF+ AAN + M PS DS + P + VGS ++ F +A
Sbjct: 344 KIGEWDGQPTGFRNAANQLRMHPS----DSRMSSWGPLTYTVGSSALTDFPMA 392
>pdb|2XHN|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|2XHN|B Chain B, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|3NJV|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Substrate Complex
Length = 508
Score = 33.5 bits (75), Expect = 0.051, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 66 KVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILA 118
K+G+ P GF+ AAN + M PS DS + P + VGS ++ F +A
Sbjct: 344 KIGEWDGQPTGFRNAANQLRMHPS----DSRMSSWGPLTYTVGSSALTDFPMA 392
>pdb|3NJX|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant
H210a
Length = 508
Score = 33.5 bits (75), Expect = 0.054, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 66 KVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILA 118
K+G+ P GF+ AAN + M PS DS + P + VGS ++ F +A
Sbjct: 344 KIGEWDGQPTGFRNAANQLRMHPS----DSRMSSWGPLTYTVGSSALTDFPMA 392
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV-SLFILAKSSRKMIDFC 128
+P +G +V +Y + G FDSSL++ + F +G G+V + +A ++ K+ + C
Sbjct: 45 TPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELC 102
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 60 LQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEV 55
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ DSS ++ +P+ F +G +V
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEV 55
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
G+Q + I G G + P G +Y M+ G+ DSS ++ +P+ F +G +V
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEV 55
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV-SLFILAKSSRKMIDFC 128
P +G +V +Y + G FDSSL++ + F +G G+V + +A ++ K+ + C
Sbjct: 47 PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVC 103
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV-SLFILAKSSRKMIDFC 128
P +G +V +Y + G FDSSL++ + F +G G+V + +A ++ K+ + C
Sbjct: 51 PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVC 107
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV-SLFILAKSSRKMIDFC 128
P +G +V +Y + G FDSSL++ + F +G G+V + +A ++ K+ + C
Sbjct: 67 PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVC 123
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 73 PPVGFQVAANYVAMIPSGQIFDSSLE-------KGRPYIFRVGSGQV------SLFILAK 119
P G V Y +P G +FD++++ +P F+VG G+V +L ++K
Sbjct: 20 PKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 120 SSRKMIDF-CTWYY 132
+ ++ W Y
Sbjct: 80 GEKARLEIEPEWAY 93
>pdb|2F5A|L Chain L, Crystal Structure Of Fab' From The Hiv-1 Neutralizing
Antibody 2f5
Length = 213
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 92 IFD-SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
I+D SSLE G P F GSG + F L S+ + DF T+Y
Sbjct: 48 IYDASSLESGVPSRFS-GSGSGTEFTLTISTLRPEDFATYY 87
>pdb|3D0L|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Fp-Mper Hyb3k
Construct
514gigalflgflgaags528kk-Ahx-655kneqelleldkwaslwn671
Length = 214
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 92 IFD-SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
I+D SSLE G P F GSG + F L S+ + DF T+Y
Sbjct: 48 IYDASSLESGVPSRFS-GSGSGTEFTLTISTLRPEDFATYY 87
>pdb|1TJG|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv-1
Antibody 2f5 In Complex With A Gp41 7mer Epitope
pdb|1TJH|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv-1
Antibody 2f5 In Complex With A Gp41 11mer Epitope
pdb|1TJI|L Chain L, Crystal Structure Of The Broadly Neutralizing Anti-Hiv-1
Antibody 2f5 In Complex With A Gp41 17mer Epitope
Length = 214
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 92 IFD-SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
I+D SSLE G P F GSG + F L S+ + DF T+Y
Sbjct: 48 IYDASSLESGVPSRFS-GSGSGTEFTLTISTLRPEDFATYY 87
>pdb|3LEV|L Chain L, Hiv-1 Antibody 2f5 In Complex With Epitope Scaffold Es2
pdb|3MOA|L Chain L, Crystal Structure Of The Neutralizing Hiv Antibody 2f5 Fab
Fragment (Recombinantly Produced Fab) With 17 Aa Gp41
Mper-Derived Peptide
pdb|3MOB|L Chain L, Crystal Structure Of The Neutralizing Hiv Antibody 2f5 Fab
Fragment (Recombinantly Produced Fab) With 11 Aa Gp41
Mper-Derived Peptide
pdb|3MOD|L Chain L, Crystal Structure Of The Neutralizing Hiv Antibody 2f5 Fab
Fragment (Recombinantly Produced Igg) With 11 Aa Gp41
Mper-Derived Peptide
Length = 214
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 92 IFD-SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
I+D SSLE G P F GSG + F L S+ + DF T+Y
Sbjct: 48 IYDASSLESGVPSRFS-GSGSGTEFTLTISTLRPEDFATYY 87
>pdb|2F5B|L Chain L, Crystal Structure Of Fab' From The Hiv-1 Neutralizing
Antibody 2f5 In Complex With Its Gp41 Epitope
pdb|1U8H|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Aldkwas
pdb|1U8I|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwan
pdb|1U8J|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwag
pdb|1U8L|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Dldrwas
pdb|1U8M|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkyas
pdb|1U8N|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkfas
pdb|1U8O|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkhas
pdb|1U8P|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Ecdkwcs
pdb|1U8Q|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Elekwas
pdb|1U91|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Analog Endkw- [dap]-S (Cyclic)
pdb|1U92|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Analog E-[dap]- Dkwqs (Cyclic)
pdb|1U93|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Analog Eqdkw- [dap]-S (Cyclic)
pdb|1U95|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldhwas
pdb|2P8L|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Elleldkwaslwn
pdb|2P8M|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Elleldkwaslwn In New Crystal Form
pdb|2P8P|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Leldkwaslw[n-Ac]
pdb|2PR4|L Chain L, Crystal Structure Of Fab' From The Hiv-1 Neutralizing
Antibody 2f5
pdb|2PW1|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwnsl
pdb|2PW2|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwksl
pdb|3D0V|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Lleldkwaslw
pdb|3DRO|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing Antibody
2f5 In Complex With Gp41 Peptide Elleldkwaslwn Grown In
Ammonium Sulfate
pdb|3DRQ|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Fp-Mper Hyb3k
Construct
514gigalflgflgaags528kk-Ahx-655kneqelleldkwaslwn671
Soaked In Peg2- Propanol Solution
pdb|3BQU|A Chain A, Crystal Structure Of The 2f5 Fab'-3h6 Fab Complex
pdb|3DRT|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Scrambledfp-Mper
Scrhyb3k Construct
Gigafgllgflaagskk-Ahx-K656neqelleldkwaslwn671
pdb|3EGS|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Scrambledfp-Mper
Scrhyb3k Construct
Gigafgllgflaagskk-Ahx-K656neqelleldkwaslwn671 Soaked In
Ammonium Sulfate
pdb|3IDJ|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Analog Eld(Orn)was
pdb|3IDM|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Analog Eld(Nrg)was
pdb|3IDN|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Analog Eld(Paf)was
pdb|3IDG|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Aldkwd
pdb|3IDI|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Aldkwnq
Length = 214
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 92 IFD-SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
I+D SSLE G P F GSG + F L S+ + DF T+Y
Sbjct: 48 IYDASSLESGVPSRFS-GSGSGTEFTLTISTLRPEDFATYY 87
>pdb|1U8K|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Leldkwasl
Length = 214
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 92 IFD-SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
I+D SSLE G P F GSG + F L S+ + DF T+Y
Sbjct: 48 IYDASSLESGVPSRFS-GSGSGTEFTLTISTLRPEDFATYY 87
>pdb|3HI5|L Chain L, Crystal Structure Of Fab Fragment Of Al-57
pdb|3HI6|L Chain L, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
pdb|3HI6|Y Chain Y, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
Length = 212
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS ++ DF T+Y
Sbjct: 53 SSLQSGVPSRFS-GSGSGTDFTLTISSLQLEDFATYY 88
>pdb|1CZ8|L Chain L, Vascular Endothelial Growth Factor In Complex With An
Affinity Matured Antibody
pdb|1CZ8|X Chain X, Vascular Endothelial Growth Factor In Complex With An
Affinity Matured Antibody
Length = 213
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 93 FDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
F SSL G P F GSG + F L SS + DF T+Y
Sbjct: 50 FTSSLHSGVPSRFS-GSGSGTDFTLTISSLQPEDFATYY 87
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 13/50 (26%)
Query: 76 GFQVAANYVAMIPSGQIFDSSLEKG-------------RPYIFRVGSGQV 112
G ++ +Y+ + SG +FD+S+E+ P F VG GQ+
Sbjct: 5 GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQL 54
>pdb|1BJ1|L Chain L, Vascular Endothelial Growth Factor In Complex With A
Neutralizing Antibody
pdb|1BJ1|J Chain J, Vascular Endothelial Growth Factor In Complex With A
Neutralizing Antibody
Length = 214
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 93 FDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
F SSL G P F GSG + F L SS + DF T+Y
Sbjct: 50 FTSSLHSGVPSRFS-GSGSGTDFTLTISSLQPEDFATYY 87
>pdb|4ERS|L Chain L, A Molecular Basis For Negative Regulation Of The Glucagon
Receptor
Length = 214
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSLE G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLESGVPSRFS-GSGSGTEFTLTISSVQPEDFVTYY 87
>pdb|3UAJ|L Chain L, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UAJ|D Chain D, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UC0|L Chain L, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
pdb|3UC0|M Chain M, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
Length = 215
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 92 IFD-SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
I+D S+LE G P F GSG + F L SS + DF T+Y
Sbjct: 49 IYDASTLESGVPSRFS-GSGSGTDFTLTISSLQPEDFATYY 88
>pdb|1DFB|L Chain L, Structure Of A Human Monoclonal Antibody Fab Fragment
Against Gp41 Of Human Immunodeficiency Virus Type I
Length = 212
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSLE G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLESGVPSRFS-GSGSGTEFTLTISSLQPDDFATYY 87
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 10 IGLVLGVSTLILDSFDAKGAGLPPEEKPRLCDDACEKELENVPMVTTESGLQYKDIKVGQ 69
+ +V G T+ + DA+ A +P L D+ ++PM ++ + I
Sbjct: 90 VWIVQGDPTIYYNLSDAQAAAIPSVSNAYLDDEKTVLAKLSMPMTLADAASGFTVIDKTT 149
Query: 70 GPSPPVGFQVAANYVAMIPSGQI 92
G PV V+AN V + G +
Sbjct: 150 GEKIPVTSAVSANPVTAVLVGDL 172
>pdb|2HWZ|L Chain L, Fab Fragment Of Humanized Anti-viral Antibody Medi-493
(synagis Tm)
Length = 213
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 92 IFDSS-LEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYF 133
I+D+S L G P F GSG + F L SS + DF T+Y F
Sbjct: 47 IYDTSKLASGVPSRFS-GSGSGTAFTLTISSLQPDDFATYYCF 88
>pdb|3K4I|A Chain A, Crystal Structure Of Uncharacterized Protein Pspto_3204
From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K4I|B Chain B, Crystal Structure Of Uncharacterized Protein Pspto_3204
From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K4I|C Chain C, Crystal Structure Of Uncharacterized Protein Pspto_3204
From Pseudomonas Syringae Pv. Tomato Str. Dc3000
Length = 244
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 76 GFQVAANYVAMIPSGQIFDSS 96
GF+ AANY+ +PSG + SS
Sbjct: 70 GFRGAANYIDQVPSGSVIVSS 90
>pdb|2JIX|A Chain A, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|G Chain G, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|L Chain L, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
Length = 214
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLQSGVPSRFS-GSGSGTEFTLTISSLQPEDFATYY 87
>pdb|3FZU|L Chain L, Igg1 Fab Characterized By HD EXCHANGE
pdb|3FZU|D Chain D, Igg1 Fab Characterized By HD EXCHANGE
Length = 214
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLQSGVPSRFS-GSGSGTEFTLTVSSLQPEDFATYY 87
>pdb|3IXT|L Chain L, Crystal Structure Of Motavizumab Fab Bound To Peptide
Epitope
pdb|3IXT|B Chain B, Crystal Structure Of Motavizumab Fab Bound To Peptide
Epitope
pdb|3QWO|L Chain L, Crystal Structure Of A Motavizumab Epitope-Scaffold Bound
To Motavizumab Fab
pdb|3QWO|B Chain B, Crystal Structure Of A Motavizumab Epitope-Scaffold Bound
To Motavizumab Fab
Length = 213
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 92 IFDSS-LEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYF 133
I+D+S L G P F GSG + F L SS + DF T+Y F
Sbjct: 47 IYDTSKLASGVPSRFS-GSGSGTEFTLTISSLQPDDFATYYCF 88
>pdb|1I9R|L Chain L, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|M Chain M, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
pdb|1I9R|Y Chain Y, Structure Of Cd40l In Complex With The Fab Fragment Of
Humanized 5c8 Antibody
Length = 218
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 93 FDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
+ S+LE G P F GSG + F L SS + DF T+Y
Sbjct: 54 YASNLESGVPARFS-GSGSGTDFTLTISSVEPEDFATYY 91
>pdb|1RZG|B Chain B, Crystal Structure Of Human Anti-hiv-1 Gp120 Reactive
Antibody 412d
pdb|1RZG|D Chain D, Crystal Structure Of Human Anti-hiv-1 Gp120 Reactive
Antibody 412d
pdb|2QAD|C Chain C, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|G Chain G, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 214
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLKSGVPSRFS-GSGSGTEFTLTISSLQSDDFATYY 87
>pdb|3NCJ|L Chain L, Crystal Structure Of Fab15 Mut8
Length = 214
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLQSGVPSRFS-GSGSGTDFTLTISSLQPEDFATYY 87
>pdb|2R56|L Chain L, Crystal Structure Of A Recombinant Ige Fab Fragment In
Complex With Bovine Beta-Lactoglobulin Allergen
pdb|2R56|M Chain M, Crystal Structure Of A Recombinant Ige Fab Fragment In
Complex With Bovine Beta-Lactoglobulin Allergen
Length = 211
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLQSGVPSRFS-GSGSGTEFTLTISSLQPEDFATYY 87
>pdb|3NA9|L Chain L, Crystal Structure Of Fab15
pdb|3NAA|L Chain L, Crystal Structure Of Fab15 Mut5
pdb|3NAB|L Chain L, Crystal Structure Of Fab15 Mut6
pdb|3NAC|L Chain L, Crystal Structure Of Fab15 Mut7
pdb|3ULU|L Chain L, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|L Chain L, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 214
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLQSGVPSRFS-GSGSGTDFTLTISSLQPEDFATYY 87
>pdb|1RZI|A Chain A, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|C Chain C, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|E Chain E, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|G Chain G, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|I Chain I, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|K Chain K, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|M Chain M, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|O Chain O, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
Length = 212
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 51 SSLQSGVPSRFS-GSGSGTDFTLTISSLQPEDFATYY 86
>pdb|2BX5|A Chain A, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|B Chain B, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|C Chain C, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|D Chain D, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|E Chain E, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|F Chain F, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|G Chain G, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|H Chain H, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|I Chain I, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|J Chain J, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|K Chain K, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|L Chain L, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|M Chain M, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|N Chain N, Is Fr1 The Antibody's Achillies Heel
pdb|2BX5|O Chain O, Is Fr1 The Antibody's Achillies Heel
Length = 107
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLQSGVPSRFS-GSGSGTDFTLTISSLQPEDFATYY 87
>pdb|1DEE|A Chain A, Crystal Structure At 2.7a Resolution Of A Complex Between
A Staphylococcus Aureus Domain And A Fab Fragment Of A
Human Igm Antibody
pdb|1DEE|C Chain C, Crystal Structure At 2.7a Resolution Of A Complex Between
A Staphylococcus Aureus Domain And A Fab Fragment Of A
Human Igm Antibody
pdb|1DEE|E Chain E, Crystal Structure At 2.7a Resolution Of A Complex Between
A Staphylococcus Aureus Domain And A Fab Fragment Of A
Human Igm Antibody
Length = 214
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLQSGVPSRFS-GSGSGTDFTLTISSLQPEDFATYY 87
>pdb|1HEZ|A Chain A, Antibody-Antigen Complex
pdb|1HEZ|C Chain C, Antibody-Antigen Complex
Length = 214
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLQSGVPSRFS-GSGSGTDFTLTISSLQPEDFATYY 87
>pdb|1DQL|L Chain L, Crystal Structure Of An Unliganded (Native) Fv From A
Human Igm Anti-Peptide Antibody
Length = 106
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 95 SSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131
SSL+ G P F GSG + F L SS + DF T+Y
Sbjct: 52 SSLQSGVPSRFS-GSGSGTDFTLTISSLQPEDFATYY 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,166,397
Number of Sequences: 62578
Number of extensions: 165768
Number of successful extensions: 460
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 87
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)