Query 031160
Match_columns 164
No_of_seqs 184 out of 1430
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:06:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 8.5E-30 1.8E-34 197.4 8.0 114 45-162 88-202 (205)
2 KOG0544 FKBP-type peptidyl-pro 99.9 1.2E-25 2.7E-30 154.1 6.7 102 59-162 2-105 (108)
3 PRK11570 peptidyl-prolyl cis-t 99.9 4.5E-25 9.8E-30 173.7 9.9 111 46-160 90-201 (206)
4 KOG0552 FKBP-type peptidyl-pro 99.9 6.9E-24 1.5E-28 167.6 7.9 106 54-162 116-223 (226)
5 TIGR03516 ppisom_GldI peptidyl 99.9 6.1E-23 1.3E-27 158.2 11.8 109 51-162 62-173 (177)
6 PRK10902 FKBP-type peptidyl-pr 99.9 1.1E-22 2.4E-27 165.8 10.0 110 47-160 135-244 (269)
7 KOG0549 FKBP-type peptidyl-pro 99.9 2.5E-22 5.5E-27 153.1 8.1 105 55-161 65-172 (188)
8 PF00254 FKBP_C: FKBP-type pep 99.8 1.1E-18 2.4E-23 120.6 5.8 86 72-159 4-91 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.6 5E-16 1.1E-20 117.5 7.8 70 72-143 4-73 (156)
10 COG1047 SlpA FKBP-type peptidy 99.4 5.7E-13 1.2E-17 101.8 8.2 80 72-153 2-81 (174)
11 PRK10737 FKBP-type peptidyl-pr 99.4 1.2E-12 2.5E-17 102.4 7.9 68 73-143 3-70 (196)
12 KOG0543 FKBP-type peptidyl-pro 99.2 3.8E-11 8.3E-16 101.7 7.4 100 57-162 83-187 (397)
13 KOG0543 FKBP-type peptidyl-pro 99.0 4.4E-10 9.6E-15 95.3 5.1 61 66-128 1-62 (397)
14 TIGR00115 tig trigger factor. 98.5 2.2E-07 4.8E-12 79.8 7.0 66 72-142 146-211 (408)
15 KOG0545 Aryl-hydrocarbon recep 98.5 5.3E-08 1.1E-12 78.7 1.2 80 56-136 8-91 (329)
16 PRK01490 tig trigger factor; P 98.4 6.8E-07 1.5E-11 77.4 7.6 62 72-137 157-218 (435)
17 COG0544 Tig FKBP-type peptidyl 98.4 5.4E-07 1.2E-11 78.4 7.0 61 73-137 158-220 (441)
18 KOG0549 FKBP-type peptidyl-pro 97.3 4.7E-05 1E-09 58.7 -0.3 36 105-142 1-36 (188)
19 TIGR01480 copper_res_A copper- 75.9 10 0.00022 34.6 6.8 17 73-89 80-96 (587)
20 PF01346 FKBP_N: Domain amino 72.0 3.3 7.2E-05 29.3 2.3 20 45-64 105-124 (124)
21 COG1018 Hmp Flavodoxin reducta 67.4 43 0.00092 27.3 8.1 96 58-157 18-131 (266)
22 PF00970 FAD_binding_6: Oxidor 64.9 38 0.00082 22.4 7.3 64 72-141 29-99 (99)
23 PF10518 TAT_signal: TAT (twin 62.5 11 0.00023 19.7 2.5 17 4-20 2-18 (26)
24 PRK08051 fre FMN reductase; Va 59.9 63 0.0014 25.2 7.6 98 56-156 13-122 (232)
25 PHA02122 hypothetical protein 56.2 18 0.00039 22.7 3.0 20 74-94 39-58 (65)
26 PRK00226 greA transcription el 45.5 24 0.00053 26.3 3.0 26 112-138 122-147 (157)
27 cd06198 FNR_like_3 NAD(P) bind 40.4 1.6E+02 0.0035 22.3 9.0 95 58-156 7-115 (216)
28 cd01090 Creatinase Creatine am 38.7 76 0.0016 24.9 5.0 53 71-131 75-136 (228)
29 PF07172 GRP: Glycine rich pro 38.3 37 0.0008 23.5 2.7 10 1-12 1-11 (95)
30 cd01088 MetAP2 Methionine Amin 37.0 70 0.0015 26.2 4.7 54 70-131 68-127 (291)
31 PF05688 DUF824: Salmonella re 36.9 89 0.0019 18.8 3.9 34 72-110 8-41 (47)
32 PRK12407 flgH flagellar basal 35.5 1.8E+02 0.0039 23.2 6.6 16 72-87 64-79 (221)
33 TIGR00501 met_pdase_II methion 34.1 91 0.002 25.7 4.9 52 71-130 73-130 (295)
34 cd01089 PA2G4-like Related to 32.9 1.1E+02 0.0025 23.8 5.1 53 71-131 81-147 (228)
35 PRK07609 CDP-6-deoxy-delta-3,4 31.6 2.8E+02 0.006 22.9 7.5 94 57-157 114-225 (339)
36 TIGR03808 RR_plus_rpt_1 twin-a 31.5 31 0.00067 30.6 1.8 14 1-15 1-14 (455)
37 PRK08671 methionine aminopepti 31.4 1.1E+02 0.0023 25.2 4.9 51 71-129 70-126 (291)
38 PRK10965 multicopper oxidase; 29.8 1.9E+02 0.004 26.1 6.5 17 73-89 81-97 (523)
39 COG4922 Uncharacterized protei 29.7 84 0.0018 22.8 3.4 41 73-118 71-112 (129)
40 PF01272 GreA_GreB: Transcript 29.6 46 0.00099 21.6 2.0 24 113-137 43-66 (77)
41 PTZ00053 methionine aminopepti 28.9 79 0.0017 28.2 3.9 51 71-129 232-288 (470)
42 cd06221 sulfite_reductase_like 28.4 3E+02 0.0064 21.7 9.0 83 72-158 27-120 (253)
43 PLN00044 multi-copper oxidase- 28.3 1.3E+02 0.0029 27.6 5.3 37 54-90 38-81 (596)
44 PRK05753 nucleoside diphosphat 28.3 1.2E+02 0.0025 22.2 4.2 25 112-137 91-115 (137)
45 PF11191 DUF2782: Protein of u 28.0 1.8E+02 0.0039 20.0 5.0 13 55-67 44-56 (105)
46 PF04246 RseC_MucC: Positive r 28.0 27 0.00059 25.2 0.8 18 121-138 49-66 (135)
47 TIGR01461 greB transcription e 26.8 1.2E+02 0.0025 22.8 4.0 24 114-138 121-144 (156)
48 PRK12897 methionine aminopepti 26.1 1.7E+02 0.0036 23.1 5.1 55 69-131 81-144 (248)
49 PF07076 DUF1344: Protein of u 24.1 1.4E+02 0.0031 19.0 3.4 35 53-87 18-52 (61)
50 PF10917 DUF2708: Protein of u 24.1 27 0.00059 20.5 0.1 14 151-164 3-16 (43)
51 TIGR00500 met_pdase_I methioni 24.0 1.9E+02 0.004 22.7 5.0 52 70-129 81-141 (247)
52 COG0024 Map Methionine aminope 24.0 2E+02 0.0044 23.5 5.2 51 71-129 85-145 (255)
53 cd06196 FNR_like_1 Ferredoxin 23.7 3.3E+02 0.0071 20.6 8.5 96 58-157 13-120 (218)
54 COG4013 Uncharacterized protei 22.9 1.7E+02 0.0036 20.0 3.7 41 72-116 20-60 (91)
55 cd01086 MetAP1 Methionine Amin 22.2 2.1E+02 0.0045 22.2 4.9 52 70-129 73-133 (238)
56 TIGR00495 crvDNA_42K 42K curve 22.2 2.1E+02 0.0045 24.7 5.2 52 71-130 99-164 (389)
57 PF09122 DUF1930: Domain of un 22.0 1.1E+02 0.0025 19.6 2.6 23 114-137 35-57 (68)
58 PLN00042 photosystem II oxygen 22.0 1.2E+02 0.0026 24.9 3.5 15 4-18 50-64 (260)
59 PRK12699 flgH flagellar basal 22.0 4.1E+02 0.0088 21.6 6.5 16 72-87 87-102 (246)
60 PRK12896 methionine aminopepti 21.9 2.1E+02 0.0045 22.5 4.9 52 70-129 88-148 (255)
61 PRK08345 cytochrome-c3 hydroge 21.8 3.6E+02 0.0077 21.8 6.3 78 73-157 38-129 (289)
62 cd06194 FNR_N-term_Iron_sulfur 21.5 3.7E+02 0.0079 20.4 7.1 99 56-157 7-118 (222)
63 PF05526 R_equi_Vir: Rhodococc 21.4 3.6E+02 0.0077 20.9 5.7 23 73-95 76-102 (177)
64 PRK02268 hypothetical protein; 21.3 69 0.0015 23.8 1.8 26 112-138 25-50 (141)
65 PF03896 TRAP_alpha: Transloco 21.1 4.9E+02 0.011 21.6 7.0 20 1-20 1-20 (285)
66 TIGR03096 nitroso_cyanin nitro 21.0 1.2E+02 0.0026 22.4 3.0 28 57-84 43-76 (135)
67 cd06182 CYPOR_like NADPH cytoc 20.7 4.5E+02 0.0097 21.0 7.8 101 56-157 13-136 (267)
68 cd04454 S1_Rrp4_like S1_Rrp4_l 20.4 2.4E+02 0.0053 17.9 6.3 60 72-135 3-62 (82)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.5e-30 Score=197.37 Aligned_cols=114 Identities=29% Similarity=0.315 Sum_probs=102.7
Q ss_pred hhhhcCCCceecCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCC
Q 031160 45 EKELENVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKM 124 (164)
Q Consensus 45 ~~~~~~~~~~~~~~Gl~~~~l~~G~G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~m 124 (164)
+++.....++++++||+|++++.|+|..|+.||+|++||++++.||++||||+++++|+.|.+| ++|+||++| |++|
T Consensus 88 ~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~eg-l~~M 164 (205)
T COG0545 88 EKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEG-LQGM 164 (205)
T ss_pred hhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHH-HhhC
Confidence 3444457788999999999999999999999999999999999999999999999999999998 999999996 9999
Q ss_pred CCCeEEEEEecCCCcccc-cCCCcccchhhHHHHhhhhc
Q 031160 125 IDFCTWYYFIVMGAFCYS-VCASLVLLVLSMLLFCLLSV 162 (164)
Q Consensus 125 k~Ge~~~~~IP~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 162 (164)
++|++|+++||+++ +|| ....+.+|+.|+|+|+.=|+
T Consensus 165 ~vG~k~~l~IP~~l-aYG~~g~~g~Ippns~LvFeVeLl 202 (205)
T COG0545 165 KVGGKRKLTIPPEL-AYGERGVPGVIPPNSTLVFEVELL 202 (205)
T ss_pred CCCceEEEEeCchh-ccCcCCCCCCCCCCCeEEEEEEEE
Confidence 99999999999996 777 44467799999999986443
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-25 Score=154.09 Aligned_cols=102 Identities=24% Similarity=0.304 Sum_probs=93.3
Q ss_pred CcEEEEEEcCCCCC-CCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEEEecCC
Q 031160 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYFIVMG 137 (164)
Q Consensus 59 Gl~~~~l~~G~G~~-p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP~~ 137 (164)
|+..+++..|+|.. |+.||+|++||++.+.||+.||||.+++.|+.|.+|.+++|+||+|| +..|.+||++++.|++.
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdeg-v~qmsvGekakLti~pd 80 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEG-VAQMSVGEKAKLTISPD 80 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhc-chhccccccceeeeccc
Confidence 68899999999965 99999999999999999999999999999999999999999999997 99999999999999998
Q ss_pred Ccccc-cCCCcccchhhHHHHhhhhc
Q 031160 138 AFCYS-VCASLVLLVLSMLLFCLLSV 162 (164)
Q Consensus 138 ~~~~~-~~~~~~~~~~~~~~~~~~~~ 162 (164)
. +|| -.-...+|+-|+|+|+.=+|
T Consensus 81 ~-aYG~~G~p~~IppNatL~FdVEll 105 (108)
T KOG0544|consen 81 Y-AYGPRGHPGGIPPNATLVFDVELL 105 (108)
T ss_pred c-ccCCCCCCCccCCCcEEEEEEEEE
Confidence 6 666 44566999999999986443
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.92 E-value=4.5e-25 Score=173.69 Aligned_cols=111 Identities=26% Similarity=0.339 Sum_probs=100.1
Q ss_pred hhhcCCCceecCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCC
Q 031160 46 KELENVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMI 125 (164)
Q Consensus 46 ~~~~~~~~~~~~~Gl~~~~l~~G~G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk 125 (164)
++.++.+++++++|++|+++++|+|..|+.||.|.+||++++.||++||+|+++++|+.|.++ ++||||+++ |.+|+
T Consensus 90 ~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~ea-L~~M~ 166 (206)
T PRK11570 90 ENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEA-LTLMP 166 (206)
T ss_pred HhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHH-HcCCC
Confidence 344567889999999999999999999999999999999999999999999999999999996 799999995 99999
Q ss_pred CCeEEEEEecCCCcccccC-CCcccchhhHHHHhhh
Q 031160 126 DFCTWYYFIVMGAFCYSVC-ASLVLLVLSMLLFCLL 160 (164)
Q Consensus 126 ~Ge~~~~~IP~~~~~~~~~-~~~~~~~~~~~~~~~~ 160 (164)
+|++|+++||+++ +||.. ....+|++++|+|++=
T Consensus 167 ~G~k~~~~IP~~l-AYG~~g~~~~Ipp~s~Lif~ve 201 (206)
T PRK11570 167 VGSKWELTIPHEL-AYGERGAGASIPPFSTLVFEVE 201 (206)
T ss_pred CCCEEEEEECHHH-cCCCCCCCCCcCCCCeEEEEEE
Confidence 9999999999996 77743 3458999999999863
No 4
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.9e-24 Score=167.61 Aligned_cols=106 Identities=29% Similarity=0.411 Sum_probs=97.5
Q ss_pred eecCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcC-CCCEEecccCCCcCEE-EEECCCchhhhhhHhHhCCCCCCeEEE
Q 031160 54 VTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIP-SGQIFDSSLEKGRPYI-FRVGSGQVSLFILAKSSRKMIDFCTWY 131 (164)
Q Consensus 54 ~~~~~Gl~~~~l~~G~G~~p~~Gd~V~v~Y~~~~~-dG~vfdss~~~~~p~~-f~lG~g~vi~Gl~eg~L~~mk~Ge~~~ 131 (164)
.++++||+|++++.|+|+.|..|++|.+||++++. +|.+||+++. ++|+. |.+|.+++|+||+.| +.+|++|++++
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-~kp~~~f~lg~g~VIkG~d~g-v~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG-GKPFKLFRLGSGEVIKGWDVG-VEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC-CCCccccccCCCCCCchHHHh-hhhhccCCeeE
Confidence 68999999999999999999999999999999998 9999999986 57888 999999999999996 99999999999
Q ss_pred EEecCCCcccccCCCcccchhhHHHHhhhhc
Q 031160 132 YFIVMGAFCYSVCASLVLLVLSMLLFCLLSV 162 (164)
Q Consensus 132 ~~IP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (164)
++|||++ +||..+-.-+|+-|+|+|+.=|+
T Consensus 194 viIPp~l-gYg~~g~~~IppnstL~fdVEL~ 223 (226)
T KOG0552|consen 194 VIIPPEL-GYGKKGVPEIPPNSTLVFDVELL 223 (226)
T ss_pred EEeCccc-cccccCcCcCCCCCcEEEEEEEE
Confidence 9999985 88876666999999999986444
No 5
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.89 E-value=6.1e-23 Score=158.17 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=96.1
Q ss_pred CCceecCCCcEEEEEEc--CCCCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCe
Q 031160 51 VPMVTTESGLQYKDIKV--GQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFC 128 (164)
Q Consensus 51 ~~~~~~~~Gl~~~~l~~--G~G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge 128 (164)
..+.++++|++|.++++ |+|..|+.||.|++||++++.||++|+++++ ..|+.|.+|.+++++||+++ |.+|++||
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~-~~P~~f~vg~~~vi~Gl~e~-L~~Mk~Ge 139 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEE-LGPQTYKVDQQDLFSGLRDG-LKLMKEGE 139 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCC-CCCEEEEeCCcchhHHHHHH-HcCCCCCC
Confidence 45678999999999976 6667899999999999999999999999986 45999999999999999995 99999999
Q ss_pred EEEEEecCCCcccc-cCCCcccchhhHHHHhhhhc
Q 031160 129 TWYYFIVMGAFCYS-VCASLVLLVLSMLLFCLLSV 162 (164)
Q Consensus 129 ~~~~~IP~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 162 (164)
+++|+||+++ +|| ......+|++|.|+|++=++
T Consensus 140 ~~~~~iP~~~-AYG~~g~~~~Ippns~L~f~IeL~ 173 (177)
T TIGR03516 140 TATFLFPSHK-AYGYYGDQNKIGPNLPIISTVTLL 173 (177)
T ss_pred EEEEEECHHH-cCCCCCCCCCcCcCCcEEEEEEEE
Confidence 9999999995 777 43456899999999987443
No 6
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.88 E-value=1.1e-22 Score=165.75 Aligned_cols=110 Identities=25% Similarity=0.245 Sum_probs=98.9
Q ss_pred hhcCCCceecCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCC
Q 031160 47 ELENVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMID 126 (164)
Q Consensus 47 ~~~~~~~~~~~~Gl~~~~l~~G~G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~ 126 (164)
+..+.+++++++|++|+++++|+|..|+.||.|++||++++.||++||+++.++.|+.|.++ ++||||+++ |.+|++
T Consensus 135 ~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~Ea-L~~Mk~ 211 (269)
T PRK10902 135 FAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEG-LKNIKK 211 (269)
T ss_pred hccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHH-HhcCCC
Confidence 34457789999999999999999999999999999999999999999999998999999985 799999995 999999
Q ss_pred CeEEEEEecCCCcccccCCCcccchhhHHHHhhh
Q 031160 127 FCTWYYFIVMGAFCYSVCASLVLLVLSMLLFCLL 160 (164)
Q Consensus 127 Ge~~~~~IP~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (164)
|++|+++||+++ .||..+...+++.++|+|.+=
T Consensus 212 Gek~~l~IP~~l-aYG~~g~~gIppns~LvfeVe 244 (269)
T PRK10902 212 GGKIKLVIPPEL-AYGKAGVPGIPANSTLVFDVE 244 (269)
T ss_pred CcEEEEEECchh-hCCCCCCCCCCCCCcEEEEEE
Confidence 999999999985 788545557899999999763
No 7
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.5e-22 Score=153.06 Aligned_cols=105 Identities=22% Similarity=0.182 Sum_probs=90.9
Q ss_pred ecCCCcEEEEEEcC--CCCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEE
Q 031160 55 TTESGLQYKDIKVG--QGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYY 132 (164)
Q Consensus 55 ~~~~Gl~~~~l~~G--~G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~ 132 (164)
.+.+++++.++++- -..+.+.||.+.+||++.+.||++|||||++++|+.|.+|.+++|+|||+| |.+|.+||++++
T Consensus 65 ~~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqg-l~gMCvGEkRkl 143 (188)
T KOG0549|consen 65 NPDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQG-LLGMCVGEKRKL 143 (188)
T ss_pred CCCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHH-hhhhCcccceEE
Confidence 45677888877763 234589999999999999999999999999999999999999999999996 999999999999
Q ss_pred EecCCCcccc-cCCCcccchhhHHHHhhhh
Q 031160 133 FIVMGAFCYS-VCASLVLLVLSMLLFCLLS 161 (164)
Q Consensus 133 ~IP~~~~~~~-~~~~~~~~~~~~~~~~~~~ 161 (164)
+|||++ +|| ..+-..+|.=+.|+|+.=+
T Consensus 144 ~IPp~L-gYG~~G~~~~IP~~A~LiFdiEL 172 (188)
T KOG0549|consen 144 IIPPHL-GYGERGAPPKIPGDAVLIFDIEL 172 (188)
T ss_pred ecCccc-cCccCCCCCCCCCCeeEEEEEEE
Confidence 999996 777 4444469999999998643
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.76 E-value=1.1e-18 Score=120.55 Aligned_cols=86 Identities=27% Similarity=0.372 Sum_probs=77.2
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEEEecCCCcccccCC--Cccc
Q 031160 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYFIVMGAFCYSVCA--SLVL 149 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP~~~~~~~~~~--~~~~ 149 (164)
.|+.||+|++||++++.+|++|++++..++|+.|.+|.+++++||++ +|.+|++||+++++||+++ .||... ...+
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~-al~~m~~Ge~~~~~vp~~~-ayg~~~~~~~~i 81 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEE-ALIGMKVGEKREFYVPPEL-AYGEKGLEPPKI 81 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHH-HHTTSBTTEEEEEEEEGGG-TTTTTTBCTTTB
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhh-hcccccCCCEeeeEeCChh-hcCccccCCCCc
Confidence 49999999999999998999999998888999999999999999999 5999999999999999985 777433 3359
Q ss_pred chhhHHHHhh
Q 031160 150 LVLSMLLFCL 159 (164)
Q Consensus 150 ~~~~~~~~~~ 159 (164)
|+.+.|+|..
T Consensus 82 p~~~~l~f~I 91 (94)
T PF00254_consen 82 PPNSTLVFEI 91 (94)
T ss_dssp TTTSEEEEEE
T ss_pred CCCCeEEEEE
Confidence 9999999875
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.64 E-value=5e-16 Score=117.53 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEEEecCCCccccc
Q 031160 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYFIVMGAFCYSV 143 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP~~~~~~~~ 143 (164)
.++.||.|++||++++.||++||+|+..++|+.|.+|.+++++||+++ |.+|++|+++++.|||+. +||.
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~a-L~gm~~Ge~~~v~ipp~~-ayG~ 73 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQ-LLGLKVGDKKTFSLEPEA-AFGV 73 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHH-HcCCCCCCEEEEEEChHH-hcCC
Confidence 478999999999999999999999998789999999999999999995 999999999999999985 7774
No 10
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.7e-13 Score=101.79 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=69.4
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEEEecCCCcccccCCCcccch
Q 031160 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYFIVMGAFCYSVCASLVLLV 151 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP~~~~~~~~~~~~~~~~ 151 (164)
.++.||.|++||+++..||++||+|.+...|+.|.+|.+++|+|+++ +|.+|.+|++.++.|||+- +||.-....++-
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~-al~g~~~Ge~~~V~IpPE~-AfGe~~~~lvq~ 79 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEE-ALLGKEVGEEFTVEIPPED-AFGEYDPDLVQR 79 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHH-HHhCCCCCceeEEEeCchH-hcCCCChHHeEE
Confidence 36789999999999999999999998767899999999999999999 5999999999999999994 888544434443
Q ss_pred hh
Q 031160 152 LS 153 (164)
Q Consensus 152 ~~ 153 (164)
++
T Consensus 80 vp 81 (174)
T COG1047 80 VP 81 (174)
T ss_pred ec
Confidence 33
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.39 E-value=1.2e-12 Score=102.36 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=63.1
Q ss_pred CCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEEEecCCCccccc
Q 031160 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYFIVMGAFCYSV 143 (164)
Q Consensus 73 p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP~~~~~~~~ 143 (164)
+++++.|++||+.++.||++||+|+. ..|+.|.+|.++++|||++ +|.+|++|+++++.|||+. +||.
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~-aL~G~~~Gd~~~v~l~pee-AyGe 70 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLET-ALEGHEVGDKFDVAVGAND-AYGQ 70 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHH-HHcCCCCCCEEEEEEChHH-hcCC
Confidence 67899999999999999999999975 6899999999999999999 5999999999999999985 7774
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.8e-11 Score=101.69 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=84.1
Q ss_pred CCCcEEEEEEcCCC--CCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECC-CchhhhhhHhHhCCCCCCeEEEEE
Q 031160 57 ESGLQYKDIKVGQG--PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS-GQVSLFILAKSSRKMIDFCTWYYF 133 (164)
Q Consensus 57 ~~Gl~~~~l~~G~G--~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~-g~vi~Gl~eg~L~~mk~Ge~~~~~ 133 (164)
+.+|..+++++|.| ..|.+|..|++||.+++.|+ +|+++ ...+.|..|+ ..+|.||+. +|+.|++||++.|+
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~---~~~fe~~~Ge~~~vi~Gle~-al~~M~~GE~a~v~ 157 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR---ELRFEFGEGEDIDVIEGLEI-ALRMMKVGEVALVT 157 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc---ccceEEecCCccchhHHHHH-HHHhcCccceEEEE
Confidence 88999999999999 55999999999999999777 77754 2347888887 479999999 59999999999999
Q ss_pred ecCCCcccc-cC-CCcccchhhHHHHhhhhc
Q 031160 134 IVMGAFCYS-VC-ASLVLLVLSMLLFCLLSV 162 (164)
Q Consensus 134 IP~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 162 (164)
|||.+ +|| .. ..-.+|+=++|+|+.=++
T Consensus 158 i~~~Y-ayG~~~~~~p~IPPnA~l~yEVeL~ 187 (397)
T KOG0543|consen 158 IDPKY-AYGEEGGEPPLIPPNATLLYEVELL 187 (397)
T ss_pred eCccc-ccCCCCCCCCCCCCCceEEEEEEEE
Confidence 99986 777 43 344899999999876544
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.4e-10 Score=95.29 Aligned_cols=61 Identities=31% Similarity=0.417 Sum_probs=56.4
Q ss_pred EcCCCCC-CCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCe
Q 031160 66 KVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFC 128 (164)
Q Consensus 66 ~~G~G~~-p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge 128 (164)
++|+|.+ |..||.|.+||++++.||+.||||.+ ++|+.|.+|.+++|.||+.| +..|+.|+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~g-v~tm~~g~ 62 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLG-VATMKKGE 62 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccc-cccccccc
Confidence 4688876 99999999999999999999999998 89999999999999999996 99999743
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.53 E-value=2.2e-07 Score=79.79 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=57.7
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEEEecCCCcccc
Q 031160 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYFIVMGAFCYS 142 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP~~~~~~~ 142 (164)
.++.||.|++||+++. +|..|+++. ..++.|.+|.+.+++||+++ |.||++|+++++.+|... -|+
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~~ee~-L~G~k~Gd~~~~~v~~p~-~~~ 211 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGK--AENFSLELGSGQFIPGFEEQ-LVGMKAGEEKEIKVTFPE-DYH 211 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCC--CCCeEEEECCCCcchhHHHH-hCCCCCCCeeEEEecCcc-ccC
Confidence 4788999999999987 899998764 47899999999999999995 999999999999998653 354
No 15
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.3e-08 Score=78.66 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=71.7
Q ss_pred cCCCcEEEEEEcCCCCC--CCCCCEEEEEEEEEcC--CCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEE
Q 031160 56 TESGLQYKDIKVGQGPS--PPVGFQVAANYVAMIP--SGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131 (164)
Q Consensus 56 ~~~Gl~~~~l~~G~G~~--p~~Gd~V~v~Y~~~~~--dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~ 131 (164)
...|+++.++..|+|+- -.+|..|++||..... .++++|+|+..++|+.+.+|...-++-|+. .|..|+++|.+.
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~-il~tM~v~Evaq 86 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEI-ILTTMRVHEVAQ 86 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHH-HHHHHhhhhHHH
Confidence 45799999999999976 5599999999999864 467999999999999999999889999999 799999999999
Q ss_pred EEecC
Q 031160 132 YFIVM 136 (164)
Q Consensus 132 ~~IP~ 136 (164)
|++--
T Consensus 87 F~~d~ 91 (329)
T KOG0545|consen 87 FWCDT 91 (329)
T ss_pred hhhhh
Confidence 98764
No 16
>PRK01490 tig trigger factor; Provisional
Probab=98.43 E-value=6.8e-07 Score=77.44 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=55.1
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEEEecCC
Q 031160 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYFIVMG 137 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP~~ 137 (164)
.++.||.|++||++.. ||..|+++. ..++.|.+|.+++++||+++ |.||++|+++.+.++..
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~--~~~~~~~lg~~~~~~~fee~-L~G~k~Ge~~~~~~~~p 218 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGK--AEDFSLELGSGRFIPGFEEQ-LVGMKAGEEKTIDVTFP 218 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCC--CCceEEEEcCCCcchhHHHH-hCCCCCCCeeEEEecCc
Confidence 4789999999999998 899988764 46899999999999999995 99999999999887754
No 17
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.4e-07 Score=78.45 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=53.7
Q ss_pred CCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEE--EEecCC
Q 031160 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY--YFIVMG 137 (164)
Q Consensus 73 p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~--~~IP~~ 137 (164)
++.||+|+++|.++. ||..|.+.. .+.+.+.+|++++||||+++ |.||+.|++.. +..|..
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~--ae~~~l~lGs~~fipgFe~~-LvG~k~Ge~k~i~vtFP~d 220 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGK--AENFSLELGSGRFIPGFEDQ-LVGMKAGEEKDIKVTFPED 220 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCcc--ccCeEEEEcCCCchhhHHhh-hccCcCCCeeEEEEEcccc
Confidence 889999999999987 999998754 35689999999999999996 99999999977 667754
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=4.7e-05 Score=58.69 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=32.0
Q ss_pred EEECCCchhhhhhHhHhCCCCCCeEEEEEecCCCcccc
Q 031160 105 FRVGSGQVSLFILAKSSRKMIDFCTWYYFIVMGAFCYS 142 (164)
Q Consensus 105 f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP~~~~~~~ 142 (164)
|.+|.+++|+|+++ ++.+|..|++++++||+++ .|+
T Consensus 1 ~~~g~~~vi~gm~~-~~~g~c~ge~rkvv~pp~l-~fg 36 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQ-ALEGMCNGEKRKVVIPPHL-GFG 36 (188)
T ss_pred CcccceEEecCHHH-HhhhhhccccceeccCCcc-ccc
Confidence 35678899999999 5999999999999999997 566
No 19
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=75.92 E-value=10 Score=34.62 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=13.4
Q ss_pred CCCCCEEEEEEEEEcCC
Q 031160 73 PPVGFQVAANYVAMIPS 89 (164)
Q Consensus 73 p~~Gd~V~v~Y~~~~~d 89 (164)
.+.||.|.++++-.+..
T Consensus 80 ~~~Gd~v~v~v~N~l~~ 96 (587)
T TIGR01480 80 WREGDTVRLRVTNTLPE 96 (587)
T ss_pred EECCCEEEEEEEcCCCC
Confidence 67999999988766543
No 20
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=71.95 E-value=3.3 Score=29.35 Aligned_cols=20 Identities=45% Similarity=0.526 Sum_probs=14.3
Q ss_pred hhhhcCCCceecCCCcEEEE
Q 031160 45 EKELENVPMVTTESGLQYKD 64 (164)
Q Consensus 45 ~~~~~~~~~~~~~~Gl~~~~ 64 (164)
.++..+++++++++||+|++
T Consensus 105 a~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 105 AENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHTSTTEEE-TTS-EEEE
T ss_pred HHHcCCCCCEECCCCCeeeC
Confidence 34456688999999999986
No 21
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=67.45 E-value=43 Score=27.35 Aligned_cols=96 Identities=13% Similarity=-0.082 Sum_probs=53.1
Q ss_pred CCcEEEEEEcCCCC--CCCCCCEEEEEEEEEcC---CCCEEecccCCCcCEEEEECCCchhh--hhhHhHhC-CCCCCeE
Q 031160 58 SGLQYKDIKVGQGP--SPPVGFQVAANYVAMIP---SGQIFDSSLEKGRPYIFRVGSGQVSL--FILAKSSR-KMIDFCT 129 (164)
Q Consensus 58 ~Gl~~~~l~~G~G~--~p~~Gd~V~v~Y~~~~~---dG~vfdss~~~~~p~~f~lG~g~vi~--Gl~eg~L~-~mk~Ge~ 129 (164)
..+.--.++...|. .-++|+.|.++...--. .-..+-|+.....-+.|.+ ...+ +... -|. .+|+||+
T Consensus 18 ~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isV---k~~~~G~~S~-~Lh~~lk~Gd~ 93 (266)
T COG1018 18 DDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISV---KREDGGGGSN-WLHDHLKVGDT 93 (266)
T ss_pred CceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEE---EEeCCCcccH-HHHhcCCCCCE
Confidence 33443344444554 36788888876532110 0011111111112344444 2222 3444 465 7999999
Q ss_pred EEEEecCCCccccc----------CCCcccchhhHHHH
Q 031160 130 WYYFIVMGAFCYSV----------CASLVLLVLSMLLF 157 (164)
Q Consensus 130 ~~~~IP~~~~~~~~----------~~~~~~~~~~~~~~ 157 (164)
+.+.-|.+.+.+-. .++++=|..|||=.
T Consensus 94 l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~ 131 (266)
T COG1018 94 LEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRT 131 (266)
T ss_pred EEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHH
Confidence 99999988876643 25668888888754
No 22
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=64.94 E-value=38 Score=22.44 Aligned_cols=64 Identities=11% Similarity=-0.028 Sum_probs=39.5
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEeccc------CCCcCEEEEECCCchhhh-hhHhHhCCCCCCeEEEEEecCCCccc
Q 031160 72 SPPVGFQVAANYVAMIPSGQIFDSSL------EKGRPYIFRVGSGQVSLF-ILAKSSRKMIDFCTWYYFIVMGAFCY 141 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~~dG~vfdss~------~~~~p~~f~lG~g~vi~G-l~eg~L~~mk~Ge~~~~~IP~~~~~~ 141 (164)
...+|+.|.++.. .+|..+...| +....+.|.+- ....| +.. .|..|++|+++.+.=|.+.+.|
T Consensus 29 ~~~pGQ~v~v~~~---~~~~~~~R~yS~~s~~~~~~~~~~~ik--~~~~G~~S~-~L~~l~~Gd~v~i~gP~G~f~y 99 (99)
T PF00970_consen 29 DFKPGQFVSVRVP---INGKQVSRPYSPASSPDDKGYLEFAIK--RYPNGRVSR-YLHQLKPGDEVEIRGPYGNFTY 99 (99)
T ss_dssp SSTTT-EEEEEEE---ETTEEEEEEEEBCSSTTSSSEEEEEEE--ECTTSHHHH-HHHTSCTTSEEEEEEEESSEEE
T ss_pred ccCcceEEEEEEc---cCCcceecceeEeeecCCCCcEEEEEE--eccCCHHHH-HHHhCCCCCEEEEEEcccccCC
Confidence 3778999999987 2444222211 12234666663 22223 445 4777999999999999887655
No 23
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=62.47 E-value=11 Score=19.70 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHhhh
Q 031160 4 VSRRDLIGLVLGVSTLI 20 (164)
Q Consensus 4 ~~Rr~~l~~~~~~~~~~ 20 (164)
++||..|..+++++++.
T Consensus 2 ~sRR~fLk~~~a~~a~~ 18 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAA 18 (26)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 57888887666655443
No 24
>PRK08051 fre FMN reductase; Validated
Probab=59.87 E-value=63 Score=25.18 Aligned_cols=98 Identities=11% Similarity=-0.067 Sum_probs=53.1
Q ss_pred cCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhh-h-hHhHhCCCCCCeEEEEE
Q 031160 56 TESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLF-I-LAKSSRKMIDFCTWYYF 133 (164)
Q Consensus 56 ~~~Gl~~~~l~~G~G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~G-l-~eg~L~~mk~Ge~~~~~ 133 (164)
..+.++.-.++..+...-++|+.|.++......---.+-|.......+.|.+.. .-.| + .. .+..+++|+++.+.
T Consensus 13 ~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~r~ySias~p~~~~~l~~~v~~--~~~~~~~~~-~~~~l~~G~~v~v~ 89 (232)
T PRK08051 13 ITDTVYRVRLVPEAPFSFRAGQYLMVVMGEKDKRPFSIASTPREKGFIELHIGA--SELNLYAMA-VMERILKDGEIEVD 89 (232)
T ss_pred CCCCeEEEEEecCCCCccCCCCEEEEEcCCCcceeecccCCCCCCCcEEEEEEE--cCCCcchHH-HHHHcCCCCEEEEE
Confidence 344555445554444457899999888632110000111211123446666642 1111 1 23 35678999999999
Q ss_pred ecCCCccccc----------CCCcccchhhHHH
Q 031160 134 IVMGAFCYSV----------CASLVLLVLSMLL 156 (164)
Q Consensus 134 IP~~~~~~~~----------~~~~~~~~~~~~~ 156 (164)
-|.+.+++.. .++++-|.+|||-
T Consensus 90 gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~ 122 (232)
T PRK08051 90 IPHGDAWLREESERPLLLIAGGTGFSYARSILL 122 (232)
T ss_pred cCCCceEccCCCCCcEEEEecCcCcchHHHHHH
Confidence 9988765542 1445567777764
No 25
>PHA02122 hypothetical protein
Probab=56.23 E-value=18 Score=22.75 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.9
Q ss_pred CCCCEEEEEEEEEcCCCCEEe
Q 031160 74 PVGFQVAANYVAMIPSGQIFD 94 (164)
Q Consensus 74 ~~Gd~V~v~Y~~~~~dG~vfd 94 (164)
.+||.|.++|.... ||..|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 47999999999997 887765
No 26
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=45.45 E-value=24 Score=26.26 Aligned_cols=26 Identities=12% Similarity=-0.318 Sum_probs=21.1
Q ss_pred hhhhhhHhHhCCCCCCeEEEEEecCCC
Q 031160 112 VSLFILAKSSRKMIDFCTWYYFIVMGA 138 (164)
Q Consensus 112 vi~Gl~eg~L~~mk~Ge~~~~~IP~~~ 138 (164)
+..-+-. +|.|.++||.+.+..|.+.
T Consensus 122 ~~SPlG~-aLlGk~~Gd~v~~~~p~g~ 147 (157)
T PRK00226 122 IESPIAR-ALIGKKVGDTVEVTTPGGE 147 (157)
T ss_pred cCChHHH-HHhCCCCCCEEEEEcCCCc
Confidence 3344668 5999999999999999873
No 27
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=40.39 E-value=1.6e+02 Score=22.31 Aligned_cols=95 Identities=8% Similarity=-0.096 Sum_probs=52.6
Q ss_pred CCcEEEEEEcCCC-CCCCCCCEEEEEEEEE--cC-CCCEEecccCCCcCEEEEECCCchhhhhhHhHhC-CCCCCeEEEE
Q 031160 58 SGLQYKDIKVGQG-PSPPVGFQVAANYVAM--IP-SGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSR-KMIDFCTWYY 132 (164)
Q Consensus 58 ~Gl~~~~l~~G~G-~~p~~Gd~V~v~Y~~~--~~-dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~-~mk~Ge~~~~ 132 (164)
.++....++.-.+ ...++|+.|.+.+... .. ---.+-+.......+.|.+-. ...+.. .|. .+++|+++.+
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~---~G~~t~-~l~~~l~~G~~v~i 82 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKA---LGDYTR-RLAERLKPGTRVTV 82 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEe---CChHHH-HHHHhCCCCCEEEE
Confidence 4444444544333 4578999999987531 10 011122211112346666631 234666 476 7999999999
Q ss_pred EecCCCccccc---------CCCcccchhhHHH
Q 031160 133 FIVMGAFCYSV---------CASLVLLVLSMLL 156 (164)
Q Consensus 133 ~IP~~~~~~~~---------~~~~~~~~~~~~~ 156 (164)
.-|.+.+.+-. .++++-|.+|||-
T Consensus 83 ~gP~G~~~~~~~~~~~vlia~GtGiap~~~~l~ 115 (216)
T cd06198 83 EGPYGRFTFDDRRARQIWIAGGIGITPFLALLE 115 (216)
T ss_pred ECCCCCCcccccCceEEEEccccCHHHHHHHHH
Confidence 98876543321 1444556677664
No 28
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=38.71 E-value=76 Score=24.93 Aligned_cols=53 Identities=9% Similarity=-0.099 Sum_probs=34.0
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCc---------hhhhhhHhHhCCCCCCeEEE
Q 031160 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VSLFILAKSSRKMIDFCTWY 131 (164)
Q Consensus 71 ~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~---------vi~Gl~eg~L~~mk~Ge~~~ 131 (164)
..+++||.|.+++-..+ +|...|.+ .+|.+|.-. +..+.+. ++..+|+|-++.
T Consensus 75 r~l~~GD~v~~d~g~~~-~GY~ad~~------RT~~vG~~~~~~~~~~~~~~ea~~~-~~~~~rpG~~~~ 136 (228)
T cd01090 75 RKVQRGDILSLNCFPMI-AGYYTALE------RTLFLDEVSDAHLKIWEANVAVHER-GLELIKPGARCK 136 (228)
T ss_pred cccCCCCEEEEEEeEEE-CCEeeeeE------EEEECCCCCHHHHHHHHHHHHHHHH-HHHHcCCCCcHH
Confidence 45899999999988776 77766643 345566321 3445555 366677775543
No 29
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=38.35 E-value=37 Score=23.46 Aligned_cols=10 Identities=50% Similarity=0.723 Sum_probs=4.5
Q ss_pred CCchhHH-HHHHH
Q 031160 1 MNLVSRR-DLIGL 12 (164)
Q Consensus 1 ~~~~~Rr-~~l~~ 12 (164)
|. ||. .+|++
T Consensus 1 Ma--SK~~llL~l 11 (95)
T PF07172_consen 1 MA--SKAFLLLGL 11 (95)
T ss_pred Cc--hhHHHHHHH
Confidence 55 444 34443
No 30
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=36.98 E-value=70 Score=26.24 Aligned_cols=54 Identities=15% Similarity=0.048 Sum_probs=35.4
Q ss_pred CCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCc------hhhhhhHhHhCCCCCCeEEE
Q 031160 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ------VSLFILAKSSRKMIDFCTWY 131 (164)
Q Consensus 70 G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~------vi~Gl~eg~L~~mk~Ge~~~ 131 (164)
....++||.|.++.-... ||..-|.+ .+|.+|... ...+.+. ++..+++|-+..
T Consensus 68 ~~~l~~GDvV~iD~G~~~-dGY~sD~a------rT~~vg~~~~~l~ea~~~A~~~-ai~~ikPG~~~~ 127 (291)
T cd01088 68 DTVLKEGDVVKLDFGAHV-DGYIADSA------FTVDFDPKYDDLLEAAKEALNA-AIKEAGPDVRLG 127 (291)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEEE------EEEecChhHHHHHHHHHHHHHH-HHHHhcCCCcHH
Confidence 345899999999987766 88776654 345555421 2355666 477777776543
No 31
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=36.92 E-value=89 Score=18.75 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=25.5
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCC
Q 031160 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG 110 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g 110 (164)
.++.|+.+.+.-+.+..+|..+- +.|+.+..|.+
T Consensus 8 kaK~Ge~I~ltVt~kda~G~pv~-----n~~f~l~r~~~ 41 (47)
T PF05688_consen 8 KAKVGETIPLTVTVKDANGNPVP-----NAPFTLTRGDA 41 (47)
T ss_pred heecCCeEEEEEEEECCCCCCcC-----CceEEEEecCc
Confidence 47889999999999988887654 34666666543
No 32
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=35.50 E-value=1.8e+02 Score=23.23 Aligned_cols=16 Identities=13% Similarity=-0.091 Sum_probs=13.3
Q ss_pred CCCCCCEEEEEEEEEc
Q 031160 72 SPPVGFQVAANYVAMI 87 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~ 87 (164)
.-+.||.|+|+-.-..
T Consensus 64 A~~VGDiiTV~i~E~t 79 (221)
T PRK12407 64 AYRVGDILTVILDEST 79 (221)
T ss_pred ccCCCCEEEEEEEEec
Confidence 3678999999988765
No 33
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=34.09 E-value=91 Score=25.67 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCC--ch----hhhhhHhHhCCCCCCeEE
Q 031160 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--QV----SLFILAKSSRKMIDFCTW 130 (164)
Q Consensus 71 ~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g--~v----i~Gl~eg~L~~mk~Ge~~ 130 (164)
...++||.|.++.-+.. ||..-|.+ .+|.+|.. .+ ..+.+. ++..+++|-+.
T Consensus 73 ~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~A~~a-ai~~~kPGv~~ 130 (295)
T TIGR00501 73 TVFKDGDVVKLDLGAHV-DGYIADTA------ITVDLGDQYDNLVKAAKDALYT-AIKEIRAGVRV 130 (295)
T ss_pred ccCCCCCEEEEEEeEEE-CCEEEEEE------EEEEeCcHHHHHHHHHHHHHHH-HHHHhcCCCCH
Confidence 45889999999987776 88877754 35666642 22 344455 36667776543
No 34
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=32.88 E-value=1.1e+02 Score=23.79 Aligned_cols=53 Identities=17% Similarity=-0.018 Sum_probs=35.0
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCC-------ch-------hhhhhHhHhCCCCCCeEEE
Q 031160 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG-------QV-------SLFILAKSSRKMIDFCTWY 131 (164)
Q Consensus 71 ~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g-------~v-------i~Gl~eg~L~~mk~Ge~~~ 131 (164)
..+++||.|.+++-+.+ +|..-|-+ .+|.+|.. .. ..+.+. ++..+|+|-++.
T Consensus 81 ~~l~~Gd~v~iD~g~~~-~GY~sD~t------RT~~vG~~~~~~~~~~~~~~~~~~~ea~~~-~~~~~kpG~~~~ 147 (228)
T cd01089 81 YTLKDGDVVKIDLGCHI-DGYIAVVA------HTIVVGAEAETPVTGKKADVIAAAHYALEA-ALRLLRPGNQNS 147 (228)
T ss_pred cccCCCCEEEEEEEEEE-CCEEEEEE------EEEEeCCcCccccchHHHHHHHHHHHHHHH-HHHHhCCCCcHH
Confidence 44899999999998777 88766654 34556632 11 244556 477888886543
No 35
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=31.59 E-value=2.8e+02 Score=22.88 Aligned_cols=94 Identities=7% Similarity=0.017 Sum_probs=50.7
Q ss_pred CCCcEEEEEEcCCCC--CCCCCCEEEEEEEEEcCCCC-E---EecccCCCcCEEEEECCCchhhh-hhHhHh-CCCCCCe
Q 031160 57 ESGLQYKDIKVGQGP--SPPVGFQVAANYVAMIPSGQ-I---FDSSLEKGRPYIFRVGSGQVSLF-ILAKSS-RKMIDFC 128 (164)
Q Consensus 57 ~~Gl~~~~l~~G~G~--~p~~Gd~V~v~Y~~~~~dG~-v---fdss~~~~~p~~f~lG~g~vi~G-l~eg~L-~~mk~Ge 128 (164)
...+..-.++...+. .-++|+.|.+... ++. . +-|.......+.|.+- .+..| +.. .| ..+++|+
T Consensus 114 ~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~----~~~~R~ySias~p~~~~~l~~~ik--~~~~G~~s~-~l~~~l~~G~ 186 (339)
T PRK07609 114 AGDVMRLKLRLPATERLQYLAGQYIEFILK----DGKRRSYSIANAPHSGGPLELHIR--HMPGGVFTD-HVFGALKERD 186 (339)
T ss_pred CCcEEEEEEEcCCCCCCccCCCCeEEEECC----CCceeeeecCCCCCCCCEEEEEEE--ecCCCccHH-HHHHhccCCC
Confidence 345544445433222 3668999988753 221 1 1111111235677662 11112 222 23 4689999
Q ss_pred EEEEEecCCCccccc----------CCCcccchhhHHHH
Q 031160 129 TWYYFIVMGAFCYSV----------CASLVLLVLSMLLF 157 (164)
Q Consensus 129 ~~~~~IP~~~~~~~~----------~~~~~~~~~~~~~~ 157 (164)
++.+.=|.+.+.+.. .++++-|.+|||--
T Consensus 187 ~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~ 225 (339)
T PRK07609 187 ILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEH 225 (339)
T ss_pred EEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHH
Confidence 999888887665531 25557788887743
No 36
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=31.50 E-value=31 Score=30.57 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=9.8
Q ss_pred CCchhHHHHHHHHHH
Q 031160 1 MNLVSRRDLIGLVLG 15 (164)
Q Consensus 1 ~~~~~Rr~~l~~~~~ 15 (164)
|+ ++||.+|++.++
T Consensus 1 ~~-~~rr~~~~~~~~ 14 (455)
T TIGR03808 1 MD-LNRRRLLGASAA 14 (455)
T ss_pred CC-ccHHHHhhhhhh
Confidence 77 578888875554
No 37
>PRK08671 methionine aminopeptidase; Provisional
Probab=31.44 E-value=1.1e+02 Score=25.15 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=33.5
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCC--ch----hhhhhHhHhCCCCCCeE
Q 031160 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--QV----SLFILAKSSRKMIDFCT 129 (164)
Q Consensus 71 ~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g--~v----i~Gl~eg~L~~mk~Ge~ 129 (164)
..+++||.|.+++-... ||...|.+ .++.+|.. .+ ..+.+. ++..+|+|-+
T Consensus 70 ~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~a~~a-ai~~ikpG~~ 126 (291)
T PRK08671 70 RVFPEGDVVKLDLGAHV-DGYIADTA------VTVDLGGKYEDLVEASEEALEA-AIEVVRPGVS 126 (291)
T ss_pred cccCCCCEEEEEEeEEE-CCEEEEEE------EEEEeChhHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 45889999999987766 88877754 35566632 12 344555 3667777744
No 38
>PRK10965 multicopper oxidase; Provisional
Probab=29.78 E-value=1.9e+02 Score=26.09 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=13.6
Q ss_pred CCCCCEEEEEEEEEcCC
Q 031160 73 PPVGFQVAANYVAMIPS 89 (164)
Q Consensus 73 p~~Gd~V~v~Y~~~~~d 89 (164)
.+.||.|.++++-.+.+
T Consensus 81 ~~~Gd~v~v~~~N~L~~ 97 (523)
T PRK10965 81 LQRGKAVTVDITNQLPE 97 (523)
T ss_pred EECCCEEEEEEEECCCC
Confidence 67999999999877643
No 39
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.66 E-value=84 Score=22.77 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=26.5
Q ss_pred CCCCCEEEEEEEEEcCC-CCEEecccCCCcCEEEEECCCchhhhhhH
Q 031160 73 PPVGFQVAANYVAMIPS-GQIFDSSLEKGRPYIFRVGSGQVSLFILA 118 (164)
Q Consensus 73 p~~Gd~V~v~Y~~~~~d-G~vfdss~~~~~p~~f~lG~g~vi~Gl~e 118 (164)
+.+||.|.+||.-++.. |..-.-+ .-.|++-+|....=|+-
T Consensus 71 iadGdLV~vh~hqt~~~pg~~~~v~-----~DtfR~ddgkivEHWDv 112 (129)
T COG4922 71 IADGDLVTVHYHQTVSEPGSYTTVT-----FDTFRIDDGKIVEHWDV 112 (129)
T ss_pred eccCCEEEEEEeeeeCCCCcceeEE-----EEEEEeeCCceeeccch
Confidence 78899999999988743 4321111 12456666677777776
No 40
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=29.64 E-value=46 Score=21.57 Aligned_cols=24 Identities=4% Similarity=-0.452 Sum_probs=18.3
Q ss_pred hhhhhHhHhCCCCCCeEEEEEecCC
Q 031160 113 SLFILAKSSRKMIDFCTWYYFIVMG 137 (164)
Q Consensus 113 i~Gl~eg~L~~mk~Ge~~~~~IP~~ 137 (164)
..-+-. +|.+.++||.+.+.+|.+
T Consensus 43 ~SPLG~-ALlG~~~Gd~v~~~~~~g 66 (77)
T PF01272_consen 43 DSPLGK-ALLGKKVGDEVEVELPGG 66 (77)
T ss_dssp TSHHHH-HHTT-BTT-EEEEEETTB
T ss_pred cCHHHH-HhcCCCCCCEEEEEeCCc
Confidence 344678 599999999999999976
No 41
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=28.95 E-value=79 Score=28.22 Aligned_cols=51 Identities=6% Similarity=-0.020 Sum_probs=33.7
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCC--ch----hhhhhHhHhCCCCCCeE
Q 031160 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--QV----SLFILAKSSRKMIDFCT 129 (164)
Q Consensus 71 ~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g--~v----i~Gl~eg~L~~mk~Ge~ 129 (164)
...++||.|.+++-..+ ||...|.++ +|.+|.. .+ ..+.+. ++..+++|-+
T Consensus 232 ~vLk~GDvVkID~G~~v-dGYiaD~Ar------Tv~vg~~~~~L~eAv~eA~~a-aI~~~kpGv~ 288 (470)
T PTZ00053 232 TVLTYDDVCKLDFGTHV-NGRIIDCAF------TVAFNPKYDPLLQATKDATNT-GIKEAGIDVR 288 (470)
T ss_pred cEecCCCeEEEEEeEEE-CCEEEeEEE------EEEeCHHHHHHHHHHHHHHHH-HHHHhcCCCc
Confidence 34889999999998887 999888753 4455532 12 344445 3666666644
No 42
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=28.42 E-value=3e+02 Score=21.72 Aligned_cols=83 Identities=8% Similarity=-0.132 Sum_probs=47.3
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEEEecCCCcccc---c-----
Q 031160 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYFIVMGAFCYS---V----- 143 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP~~~~~~~---~----- 143 (164)
.-++|+.+.+++......-..+-+.......+.|.+- ....+.. .|..+++|+++.+.=|.+-+.+- .
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~~~~l~~~Ik---~~G~~S~-~L~~l~~G~~v~i~gP~G~~f~~~~~~~~~iv 102 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTRRGPLELTIR---RVGRVTE-ALHELKPGDTVGLRGPFGNGFPVEEMKGKDLL 102 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCCCCeEEEEEE---eCChhhH-HHHcCCCCCEEEEECCcCCCcccccccCCeEE
Confidence 4778999988864211000111222211345777763 2234667 48889999999999997653221 1
Q ss_pred ---CCCcccchhhHHHHh
Q 031160 144 ---CASLVLLVLSMLLFC 158 (164)
Q Consensus 144 ---~~~~~~~~~~~~~~~ 158 (164)
.+.+.-|.+||+-..
T Consensus 103 ~IA~G~GitP~ls~l~~~ 120 (253)
T cd06221 103 LVAGGLGLAPLRSLINYI 120 (253)
T ss_pred EEccccchhHHHHHHHHH
Confidence 144566777776543
No 43
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=28.32 E-value=1.3e+02 Score=27.63 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=23.3
Q ss_pred eecCCC--cE-EEEEEcC--CCCC--CCCCCEEEEEEEEEcCCC
Q 031160 54 VTTESG--LQ-YKDIKVG--QGPS--PPVGFQVAANYVAMIPSG 90 (164)
Q Consensus 54 ~~~~~G--l~-~~~l~~G--~G~~--p~~Gd~V~v~Y~~~~~dG 90 (164)
..+++| .. ..+...| .|+. ...||.|.|+.+-++.++
T Consensus 38 ~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ 81 (596)
T PLN00044 38 SAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEP 81 (596)
T ss_pred EEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCC
Confidence 356777 33 3344455 4554 679999999877766443
No 44
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=28.31 E-value=1.2e+02 Score=22.22 Aligned_cols=25 Identities=12% Similarity=-0.198 Sum_probs=20.7
Q ss_pred hhhhhhHhHhCCCCCCeEEEEEecCC
Q 031160 112 VSLFILAKSSRKMIDFCTWYYFIVMG 137 (164)
Q Consensus 112 vi~Gl~eg~L~~mk~Ge~~~~~IP~~ 137 (164)
+..-+-. +|.|.++||.+.+..|.+
T Consensus 91 i~SPlG~-ALlG~~~Gd~v~v~~p~G 115 (137)
T PRK05753 91 VLAPVGA-ALLGLSVGQSIDWPLPGG 115 (137)
T ss_pred ccCHHHH-HHcCCCCCCEEEEECCCC
Confidence 3445778 599999999999999976
No 45
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=28.04 E-value=1.8e+02 Score=20.04 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=7.1
Q ss_pred ecCCCcEEEEEEc
Q 031160 55 TTESGLQYKDIKV 67 (164)
Q Consensus 55 ~~~~Gl~~~~l~~ 67 (164)
..+.+.+++..+.
T Consensus 44 ~~~~~~~ieEyRv 56 (105)
T PF11191_consen 44 IEDGGSTIEEYRV 56 (105)
T ss_pred EecCCcEEEEEEE
Confidence 4455566655554
No 46
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=28.00 E-value=27 Score=25.15 Aligned_cols=18 Identities=6% Similarity=-0.477 Sum_probs=15.5
Q ss_pred hCCCCCCeEEEEEecCCC
Q 031160 121 SRKMIDFCTWYYFIVMGA 138 (164)
Q Consensus 121 L~~mk~Ge~~~~~IP~~~ 138 (164)
=.+.++||++++.+|.+.
T Consensus 49 ~~~~~~GD~V~v~i~~~~ 66 (135)
T PF04246_consen 49 PIGAKVGDRVEVEIPESS 66 (135)
T ss_pred CCCCCCCCEEEEEeccch
Confidence 356899999999999875
No 47
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=26.76 E-value=1.2e+02 Score=22.78 Aligned_cols=24 Identities=8% Similarity=-0.341 Sum_probs=20.3
Q ss_pred hhhhHhHhCCCCCCeEEEEEecCCC
Q 031160 114 LFILAKSSRKMIDFCTWYYFIVMGA 138 (164)
Q Consensus 114 ~Gl~eg~L~~mk~Ge~~~~~IP~~~ 138 (164)
.-+-. +|.|.++||.+.+-.|.+-
T Consensus 121 SPlG~-ALlGk~~GD~v~v~~p~g~ 144 (156)
T TIGR01461 121 SPLAR-ALLKKEVGDEVVVNTPAGE 144 (156)
T ss_pred CHHHH-HHcCCCCCCEEEEEcCCCc
Confidence 44667 5999999999999999874
No 48
>PRK12897 methionine aminopeptidase; Reviewed
Probab=26.13 E-value=1.7e+02 Score=23.14 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=36.0
Q ss_pred CCCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCc---------hhhhhhHhHhCCCCCCeEEE
Q 031160 69 QGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VSLFILAKSSRKMIDFCTWY 131 (164)
Q Consensus 69 ~G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~---------vi~Gl~eg~L~~mk~Ge~~~ 131 (164)
++...++||.|.+++-... +|..-|.+ .+|.+|.-. +..+.+. ++..+++|-++.
T Consensus 81 ~~~~l~~Gd~V~iD~g~~~-~GY~sD~t------RT~~vG~~s~~~~~~~~~~~~a~~~-~i~~~kpG~~~~ 144 (248)
T PRK12897 81 ADVPLTEGDIVTIDMVVNL-NGGLSDSA------WTYRVGKVSDEAEKLLLVAENALYK-GIDQAVIGNRVG 144 (248)
T ss_pred CCcccCCCCEEEEEeeEEE-CCEEEEEE------EEEEcCCCCHHHHHHHHHHHHHHHH-HHHhhcCCCccc
Confidence 3445899999999998876 77766654 355666321 2345566 377788885443
No 49
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=24.15 E-value=1.4e+02 Score=18.96 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=24.3
Q ss_pred ceecCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEc
Q 031160 53 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMI 87 (164)
Q Consensus 53 ~~~~~~Gl~~~~l~~G~G~~p~~Gd~V~v~Y~~~~ 87 (164)
..++++|=.|+.-.+=+=...++|..|.++|....
T Consensus 18 titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~~ 52 (61)
T PF07076_consen 18 TITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEVD 52 (61)
T ss_pred EEEecCCCEEECCCcccccccCCCCEEEEEEEccC
Confidence 35778888877432222244889999999997654
No 50
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=24.07 E-value=27 Score=20.51 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=11.3
Q ss_pred hhhHHHHhhhhcCC
Q 031160 151 VLSMLLFCLLSVSS 164 (164)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (164)
.||..+|.+|.+||
T Consensus 3 ~YsvfvFaiLaiss 16 (43)
T PF10917_consen 3 VYSVFVFAILAISS 16 (43)
T ss_pred eeeehHHHHhhhhc
Confidence 58888999988765
No 51
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=24.01 E-value=1.9e+02 Score=22.67 Aligned_cols=52 Identities=13% Similarity=-0.052 Sum_probs=34.9
Q ss_pred CCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCC---------chhhhhhHhHhCCCCCCeE
Q 031160 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG---------QVSLFILAKSSRKMIDFCT 129 (164)
Q Consensus 70 G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g---------~vi~Gl~eg~L~~mk~Ge~ 129 (164)
...+++||.|.+++-... +|..-|-+ .+|.+|.. .+..+++. ++..+|+|-+
T Consensus 81 ~~~l~~Gd~v~iD~g~~~-~gY~aD~~------RT~~vG~~~~~~~~~~~~~~~a~~~-~~~~~kpG~~ 141 (247)
T TIGR00500 81 KKVLKDGDIVNIDVGVIY-DGYHGDTA------KTFLVGKISPEAEKLLECTEESLYK-AIEEAKPGNR 141 (247)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEEE------EEEEcCCCCHHHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 455899999999998876 77766644 34566631 13455666 4777788744
No 52
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=23.98 E-value=2e+02 Score=23.46 Aligned_cols=51 Identities=22% Similarity=0.081 Sum_probs=35.2
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCc------hh----hhhhHhHhCCCCCCeE
Q 031160 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ------VS----LFILAKSSRKMIDFCT 129 (164)
Q Consensus 71 ~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~------vi----~Gl~eg~L~~mk~Ge~ 129 (164)
...++||.|.++..... ||..-|++ ..|.+|... ++ ..+..| +..+|+|-+
T Consensus 85 ~vlk~GDiv~IDvg~~~-dG~~~Dsa------~T~~vg~~~~~~~~~L~~~t~eal~~~-I~~vkpG~~ 145 (255)
T COG0024 85 KVLKEGDIVKIDVGAHI-DGYIGDTA------ITFVVGEVSDEDAKRLLEATKEALYAG-IEAVKPGAR 145 (255)
T ss_pred cccCCCCEEEEEEEEEE-CCeeeeEE------EEEECCCCChHHHHHHHHHHHHHHHHH-HHhccCCCC
Confidence 44889999999998887 89888865 467777311 33 345553 666676644
No 53
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=23.66 E-value=3.3e+02 Score=20.58 Aligned_cols=96 Identities=11% Similarity=-0.049 Sum_probs=53.4
Q ss_pred CCcEEEEEEcCCCCCCCCCCEEEEEEEEEcCCCC------EEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEE
Q 031160 58 SGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQ------IFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWY 131 (164)
Q Consensus 58 ~Gl~~~~l~~G~G~~p~~Gd~V~v~Y~~~~~dG~------vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~ 131 (164)
..+..-.++...+..-++|+.|.+..... +.. .+-|. .....+.|.+-.-.--.++.. .|..+++|+++.
T Consensus 13 ~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~--~~~~~~r~ySi~s~-~~~~~l~~~vk~~~~~g~~s~-~l~~l~~G~~v~ 88 (218)
T cd06196 13 HDVKRLRFDKPEGYDFTPGQATEVAIDKP--GWRDEKRPFTFTSL-PEDDVLEFVIKSYPDHDGVTE-QLGRLQPGDTLL 88 (218)
T ss_pred CCeEEEEEcCCCcCCCCCCCEEEEEeeCC--CCCccccccccccC-CCCCeEEEEEEEcCCCCcHhH-HHHhCCCCCEEE
Confidence 33443344443444578999998875421 110 11111 112345666531000024567 588899999999
Q ss_pred EEecCCCcccc------cCCCcccchhhHHHH
Q 031160 132 YFIVMGAFCYS------VCASLVLLVLSMLLF 157 (164)
Q Consensus 132 ~~IP~~~~~~~------~~~~~~~~~~~~~~~ 157 (164)
+.=|.+.+.+. ..++++-|.+||+--
T Consensus 89 i~gP~G~~~~~~~~vlia~GtGiaP~~s~l~~ 120 (218)
T cd06196 89 IEDPWGAIEYKGPGVFIAGGAGITPFIAILRD 120 (218)
T ss_pred EECCccceEecCceEEEecCCCcChHHHHHHH
Confidence 98888765432 126667788888764
No 54
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.94 E-value=1.7e+02 Score=19.97 Aligned_cols=41 Identities=12% Similarity=-0.007 Sum_probs=27.4
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhh
Q 031160 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFI 116 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl 116 (164)
++..||.|.+.|--....|+++.-+. .-+++.+- ..+++|+
T Consensus 20 eV~~gd~vel~~grVhIpG~vv~~n~---g~l~l~~e-sdmi~Gi 60 (91)
T COG4013 20 EVDVGDYVELYFGRVHIPGRVVHYND---GLLRLVHE-SDMIYGI 60 (91)
T ss_pred cCCCCCEEEEEEEEEEeccEEEEeec---cEEEEEEe-ccccCce
Confidence 47889999999966556888887543 23455543 3566663
No 55
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=22.20 E-value=2.1e+02 Score=22.19 Aligned_cols=52 Identities=15% Similarity=-0.019 Sum_probs=32.8
Q ss_pred CCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCc---------hhhhhhHhHhCCCCCCeE
Q 031160 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VSLFILAKSSRKMIDFCT 129 (164)
Q Consensus 70 G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~---------vi~Gl~eg~L~~mk~Ge~ 129 (164)
...+++||.|.+.+-... +|..-|-+ .+|.+|... +..+.+. ++..+|+|-+
T Consensus 73 ~~~l~~Gd~v~id~g~~~-~GY~ad~~------RT~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~pG~~ 133 (238)
T cd01086 73 DRVLKDGDIVNIDVGVEL-DGYHGDSA------RTFIVGEVSEEAKKLVEVTEEALYK-GIEAVKPGNR 133 (238)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEEE------EEEECCCCCHHHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 455889999999998876 77665543 345555321 2344555 3666777643
No 56
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=22.18 E-value=2.1e+02 Score=24.75 Aligned_cols=52 Identities=25% Similarity=0.041 Sum_probs=35.2
Q ss_pred CCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCC----------ch----hhhhhHhHhCCCCCCeEE
Q 031160 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG----------QV----SLFILAKSSRKMIDFCTW 130 (164)
Q Consensus 71 ~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g----------~v----i~Gl~eg~L~~mk~Ge~~ 130 (164)
...++||.|.+++-... ||..-|.+ .+|.+|.. .+ ..+++. ++..+++|-+.
T Consensus 99 ~~Lk~GDvVkIDlG~~i-dGY~aD~a------rTv~vG~~~~~~~t~~~~~l~~aa~~A~~a-ai~~vkPG~~~ 164 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI-DGFIALVA------HTFVVGVAQEEPVTGRKADVIAAAHLAAEA-ALRLVKPGNTN 164 (389)
T ss_pred cCcCCCCEEEEEEEEEE-CCEEEEEE------EEEEECCcccccCCHHHHHHHHHHHHHHHH-HHHHhCCCCcH
Confidence 45899999999998887 88877765 35666631 12 234556 47777877544
No 57
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=22.02 E-value=1.1e+02 Score=19.64 Aligned_cols=23 Identities=4% Similarity=-0.279 Sum_probs=16.9
Q ss_pred hhhhHhHhCCCCCCeEEEEEecCC
Q 031160 114 LFILAKSSRKMIDFCTWYYFIVMG 137 (164)
Q Consensus 114 ~Gl~eg~L~~mk~Ge~~~~~IP~~ 137 (164)
+.+.. ++..|..||+++++.-++
T Consensus 35 ~El~s-A~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKS-ALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHH-HHTT-BTT-EEEEEETTS
T ss_pred HHHHH-HHHHhhcCceeEEEEecC
Confidence 35667 599999999999998765
No 58
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=22.01 E-value=1.2e+02 Score=24.92 Aligned_cols=15 Identities=40% Similarity=0.663 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHh
Q 031160 4 VSRRDLIGLVLGVST 18 (164)
Q Consensus 4 ~~Rr~~l~~~~~~~~ 18 (164)
++||.++.+++++++
T Consensus 50 ~srr~~l~~~~ga~a 64 (260)
T PLN00042 50 VSRRAALALLAGAAA 64 (260)
T ss_pred ccHHHHHHHHHHHHH
Confidence 688888776666644
No 59
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.01 E-value=4.1e+02 Score=21.63 Aligned_cols=16 Identities=6% Similarity=0.011 Sum_probs=13.3
Q ss_pred CCCCCCEEEEEEEEEc
Q 031160 72 SPPVGFQVAANYVAMI 87 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~ 87 (164)
.-+.||.|+|.-.-..
T Consensus 87 A~~VGDiiTV~i~E~t 102 (246)
T PRK12699 87 ARQIGDTIIVLLNEKT 102 (246)
T ss_pred cccCCCEEEEEEEEec
Confidence 3678999999988775
No 60
>PRK12896 methionine aminopeptidase; Reviewed
Probab=21.90 E-value=2.1e+02 Score=22.45 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=33.4
Q ss_pred CCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCc---------hhhhhhHhHhCCCCCCeE
Q 031160 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VSLFILAKSSRKMIDFCT 129 (164)
Q Consensus 70 G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~---------vi~Gl~eg~L~~mk~Ge~ 129 (164)
+..+++||.|.+++-... +|..-|.+ .+|.+|... +..+++. ++..|++|-+
T Consensus 88 ~~~l~~Gd~v~iD~g~~~-~gY~aD~~------RT~~vG~~~~~~~~~~~~~~~a~~~-~~~~~kpG~~ 148 (255)
T PRK12896 88 PRVIKDGDLVNIDVSAYL-DGYHGDTG------ITFAVGPVSEEAEKLCRVAEEALWA-GIKQVKAGRP 148 (255)
T ss_pred CccCCCCCEEEEEEeEEE-CcEEEeeE------EEEECCCCCHHHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 345889999999998876 67655543 345566321 2455666 3777777743
No 61
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=21.77 E-value=3.6e+02 Score=21.85 Aligned_cols=78 Identities=12% Similarity=-0.072 Sum_probs=45.4
Q ss_pred CCCCCEEEEEEEEEcCCCCE---EecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEEEecCCCcccc-c-----
Q 031160 73 PPVGFQVAANYVAMIPSGQI---FDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYFIVMGAFCYS-V----- 143 (164)
Q Consensus 73 p~~Gd~V~v~Y~~~~~dG~v---fdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP~~~~~~~-~----- 143 (164)
-++|+.|.++... ++.. +-+.......+.|.+-. ...+.. .|..+++|+++.+.=|.+.+.+- .
T Consensus 38 ~~pGQ~v~l~~~~---~~~~pySias~p~~~~~l~l~Ik~---~G~~S~-~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~ 110 (289)
T PRK08345 38 FKPGQFVQVTIPG---VGEVPISICSSPTRKGFFELCIRR---AGRVTT-VIHRLKEGDIVGVRGPYGNGFPVDEMEGMD 110 (289)
T ss_pred cCCCCEEEEEcCC---CCceeeEecCCCCCCCEEEEEEEe---CChHHH-HHHhCCCCCEEEEeCCCCCCCCcccccCce
Confidence 5789999887532 1211 11111112336666632 134556 47779999999999888752221 1
Q ss_pred -----CCCcccchhhHHHH
Q 031160 144 -----CASLVLLVLSMLLF 157 (164)
Q Consensus 144 -----~~~~~~~~~~~~~~ 157 (164)
.++++-|.+|||-.
T Consensus 111 ~llIAgGtGIaP~~s~l~~ 129 (289)
T PRK08345 111 LLLIAGGLGMAPLRSVLLY 129 (289)
T ss_pred EEEEecccchhHHHHHHHH
Confidence 25567788888754
No 62
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=21.49 E-value=3.7e+02 Score=20.36 Aligned_cols=99 Identities=6% Similarity=-0.132 Sum_probs=51.2
Q ss_pred cCCCcEEEEEEcCCCCCCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhh-hhHhHhCC-CCCCeEEEEE
Q 031160 56 TESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLF-ILAKSSRK-MIDFCTWYYF 133 (164)
Q Consensus 56 ~~~Gl~~~~l~~G~G~~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~G-l~eg~L~~-mk~Ge~~~~~ 133 (164)
..+.+..-.++......-++|+.|.++......---.+-|.......+.|.+-. .-.| +.. .|.. +++|+++.+.
T Consensus 7 ~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~~~~~~~i~~--~~~G~~s~-~l~~~~~~G~~v~i~ 83 (222)
T cd06194 7 LSPDVLRVRLEPDRPLPYLPGQYVNLRRAGGLARSYSPTSLPDGDNELEFHIRR--KPNGAFSG-WLGEEARPGHALRLQ 83 (222)
T ss_pred cCCCEEEEEEecCCCCCcCCCCEEEEEcCCCCceeeecCCCCCCCCEEEEEEEe--ccCCccch-HHHhccCCCCEEEEe
Confidence 344555445554444457789999988632110001111211111345565521 1112 344 3655 6999999998
Q ss_pred ecCCCccccc-----------CCCcccchhhHHHH
Q 031160 134 IVMGAFCYSV-----------CASLVLLVLSMLLF 157 (164)
Q Consensus 134 IP~~~~~~~~-----------~~~~~~~~~~~~~~ 157 (164)
=|.+.+.+-. .++++-|.++++-.
T Consensus 84 gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~ 118 (222)
T cd06194 84 GPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARA 118 (222)
T ss_pred cCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHH
Confidence 8877654431 14455667776653
No 63
>PF05526 R_equi_Vir: Rhodococcus equi virulence-associated protein; InterPro: IPR008810 This family consists of several virulence-associated proteins from Corynebacterium equii (Rhodococcus equi). R. equi is an important pulmonary pathogen of foals and is increasingly isolated from pneumonic infections and other infections in Homo sapiens immunodeficiency virus-infected patients. Isolates from foals possess a large virulence plasmid, varying in size from 80 to 90 kb. Isolates lacking the plasmid are avirulent to foals. Little is known about the function of the plasmid apart from its encoding a virulence associated surface protein [].
Probab=21.37 E-value=3.6e+02 Score=20.87 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=13.2
Q ss_pred CCCCCEEE----EEEEEEcCCCCEEec
Q 031160 73 PPVGFQVA----ANYVAMIPSGQIFDS 95 (164)
Q Consensus 73 p~~Gd~V~----v~Y~~~~~dG~vfds 95 (164)
+..|+.+. -|+......|+.|+.
T Consensus 76 ~v~g~v~Sa~fYq~~~v~v~gGktF~G 102 (177)
T PF05526_consen 76 PVHGVVVSALFYQHFSVTVDGGKTFDG 102 (177)
T ss_pred eEEEEEEEEEEEEEEEEEeCCCeEEec
Confidence 44455433 355555567888885
No 64
>PRK02268 hypothetical protein; Provisional
Probab=21.31 E-value=69 Score=23.82 Aligned_cols=26 Identities=19% Similarity=-0.053 Sum_probs=20.2
Q ss_pred hhhhhhHhHhCCCCCCeEEEEEecCCC
Q 031160 112 VSLFILAKSSRKMIDFCTWYYFIVMGA 138 (164)
Q Consensus 112 vi~Gl~eg~L~~mk~Ge~~~~~IP~~~ 138 (164)
+-.|=.. .|..||+||...++.|-..
T Consensus 25 v~hgK~a-pl~RmkpGD~ivyYsp~~~ 50 (141)
T PRK02268 25 VCHGKAA-PLRRMKPGDWIIYYSPKTT 50 (141)
T ss_pred eCCCccc-hhhcCCCCCEEEEEeceEe
Confidence 3344455 5899999999999999863
No 65
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=21.13 E-value=4.9e+02 Score=21.64 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=13.5
Q ss_pred CCchhHHHHHHHHHHHHhhh
Q 031160 1 MNLVSRRDLIGLVLGVSTLI 20 (164)
Q Consensus 1 ~~~~~Rr~~l~~~~~~~~~~ 20 (164)
|+.++|-.+|.+.+.-++++
T Consensus 1 ~~~~~~~~ll~ll~~p~~l~ 20 (285)
T PF03896_consen 1 MRFLSRLILLALLVFPATLL 20 (285)
T ss_pred CcchhhHHHHHHHHHHHHHH
Confidence 78888888777655544444
No 66
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=21.02 E-value=1.2e+02 Score=22.42 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=23.8
Q ss_pred CCCcEEEEEEcCCCCC------CCCCCEEEEEEE
Q 031160 57 ESGLQYKDIKVGQGPS------PPVGFQVAANYV 84 (164)
Q Consensus 57 ~~Gl~~~~l~~G~G~~------p~~Gd~V~v~Y~ 84 (164)
..|+.++.++.|++.- ++.||.|+++++
T Consensus 43 ~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 43 VEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVE 76 (135)
T ss_pred eCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEE
Confidence 7899999999888731 789999999996
No 67
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=20.69 E-value=4.5e+02 Score=21.04 Aligned_cols=101 Identities=8% Similarity=-0.143 Sum_probs=54.5
Q ss_pred cCCCcEEEEEEcCC--CCCCCCCCEEEEEEEEEcCC-CCEEecccCC-CcCEEEEECCC-------chhhh-hhHhHhCC
Q 031160 56 TESGLQYKDIKVGQ--GPSPPVGFQVAANYVAMIPS-GQIFDSSLEK-GRPYIFRVGSG-------QVSLF-ILAKSSRK 123 (164)
Q Consensus 56 ~~~Gl~~~~l~~G~--G~~p~~Gd~V~v~Y~~~~~d-G~vfdss~~~-~~p~~f~lG~g-------~vi~G-l~eg~L~~ 123 (164)
.+.++.--.++... ...-.+|+.|.+...+...- -..+-+.... ...+.|.+... ....| ... .|..
T Consensus 13 ~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~-~L~~ 91 (267)
T cd06182 13 SPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSN-FLAG 91 (267)
T ss_pred CCCceEEEEEecCCCCcCccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhH-HHhh
Confidence 45566655565553 33467899988865321100 0112111111 12355655311 11114 345 4777
Q ss_pred CCCCeEEEEEecCC-Cccccc----------CCCcccchhhHHHH
Q 031160 124 MIDFCTWYYFIVMG-AFCYSV----------CASLVLLVLSMLLF 157 (164)
Q Consensus 124 mk~Ge~~~~~IP~~-~~~~~~----------~~~~~~~~~~~~~~ 157 (164)
+++|+.+.+..|.+ .+.+-. .+.++-|.+||+--
T Consensus 92 lk~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~ 136 (267)
T cd06182 92 LQLGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQE 136 (267)
T ss_pred CCCCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHH
Confidence 99999999999998 555431 14556777777754
No 68
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=20.43 E-value=2.4e+02 Score=17.92 Aligned_cols=60 Identities=10% Similarity=-0.125 Sum_probs=33.9
Q ss_pred CCCCCCEEEEEEEEEcCCCCEEecccCCCcCEEEEECCCchhhhhhHhHhCCCCCCeEEEEEec
Q 031160 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVSLFILAKSSRKMIDFCTWYYFIV 135 (164)
Q Consensus 72 ~p~~Gd~V~v~Y~~~~~dG~vfdss~~~~~p~~f~lG~g~vi~Gl~eg~L~~mk~Ge~~~~~IP 135 (164)
.|+.||.|...-+....++-.++=. ..+...+-..++.....+..-..+++||...+.|=
T Consensus 3 ~p~~GdiV~G~V~~v~~~~~~V~i~----~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~ 62 (82)
T cd04454 3 LPDVGDIVIGIVTEVNSRFWKVDIL----SRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVI 62 (82)
T ss_pred CCCCCCEEEEEEEEEcCCEEEEEeC----CCceEEeechhccCcchHHHHhcCCCCCEEEEEEE
Confidence 3789999987777766555555421 12333333233332222212344799999988764
Done!