BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031162
         (164 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
           Furiosus
          Length = 226

 Score = 30.8 bits (68), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 75  IHQDVRILSKKIPVTKFLNLQVGIGHNFQLHAT-GWKWKLTTCLVE-MEYP 123
           I QDVRIL    P   +  L V + H F +  T   K K+   +VE +EYP
Sbjct: 132 IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP 182


>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
           Pyrococcus Horikoshii
 pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
           Pyrococcus Horikoshii
 pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
           Pyrococcus Horikoshii
 pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
           Pyrococcus Horikoshii
 pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
           Pyrococcus Horikoshii
 pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
           Pyrococcus Horikoshii
 pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
           Pyrococcus Horikoshii
 pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
           Pyrococcus Horikoshii
          Length = 226

 Score = 28.5 bits (62), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 75  IHQDVRILSKKIPVTKFLNLQVGIGHNFQLHAT-GWKWKLTTCLVE-MEYP 123
           I +DVRIL    P   +  L V + H F +  T   K K+   +VE +EYP
Sbjct: 132 IDKDVRILIFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP 182


>pdb|1Z7S|2 Chain 2, The Crystal Structure Of Coxsackievirus A21
 pdb|1Z7Z|2 Chain 2, Cryo-Em Structure Of Human Coxsackievirus A21 Complexed
           With Five Domain Icam-1kilifi
          Length = 272

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 108 GWKWKLTTCLVEMEYPGSGIRHLWACVLGWIFDLVGGQIMFFQRLLGLWVL---VNRCST 164
           GW WKL  CL +M   G  + + +    G+   +      F Q  LG++++   V  C+T
Sbjct: 77  GWWWKLPDCLKDMGMFGQNMYYHYLGRSGYTIHVQCNASKFHQGALGVFLIPEFVMACNT 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.142    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,515,557
Number of Sequences: 62578
Number of extensions: 225369
Number of successful extensions: 375
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 4
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)