Query 031162
Match_columns 164
No_of_seqs 16 out of 18
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 16:03:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l66_A SSO7C4, transcriptional 33.3 6.3 0.00021 24.7 -0.7 39 21-69 15-53 (53)
2 1lv4_A Catestatin, chromograni 33.2 11 0.00039 22.4 0.4 11 122-132 16-26 (26)
3 3i9v_7 NADH-quinone oxidoreduc 29.3 23 0.00079 27.5 1.7 37 51-90 76-112 (129)
4 1yfb_A Transition state regula 26.1 32 0.0011 22.4 1.8 43 12-65 17-59 (59)
5 4gh9_A Polymerase cofactor VP3 19.9 46 0.0016 26.3 1.8 47 20-81 95-143 (146)
6 2e7m_A Protein KIAA0319; PKD d 19.7 1.2E+02 0.0041 22.7 4.0 70 37-108 16-90 (113)
7 3rws_A MTN13 protein; zeatin, 16.5 84 0.0029 23.6 2.5 32 49-80 99-133 (168)
8 1ln1_A PC-TP, phosphatidylchol 14.3 1.4E+02 0.0049 21.4 3.2 26 61-88 23-48 (214)
9 1o6a_A Putative flagellar moto 12.9 23 0.00077 24.6 -1.4 23 75-97 21-43 (96)
10 2gia_A Mitochondrial RNA-bindi 11.6 24 0.00081 28.8 -1.9 28 105-133 21-53 (195)
No 1
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=33.32 E-value=6.3 Score=24.66 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=27.6
Q ss_pred ccchhhhhhhheeecceEEEeeeEEecCCCcceeeEEEeecCCCCCCce
Q 031162 21 LMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPNRPWK 69 (164)
Q Consensus 21 lmP~El~lKFRkevqG~rvG~NfEf~n~~~nd~~aKlVlKPl~~~~kWK 69 (164)
..|+|++-++ |++-|-.+++.- .+- +++++|......||
T Consensus 15 ~IPk~ir~~l-----gi~~Gd~v~i~~---~~~--~ivl~p~~~~~~~~ 53 (53)
T 2l66_A 15 TIPAKVRQKF-----QIKEGDLVKVTF---DES--EGVVKIQLLKEPWK 53 (53)
T ss_dssp CCCHHHHHHS-----CCCTTCEEEEEE---CSS--SCCEEEEEECCCCC
T ss_pred EeCHHHHHHc-----CcCCCCEEEEEE---ECC--EEEEEECCCCCCCC
Confidence 3587776554 777777788773 221 59999998888886
No 2
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=33.18 E-value=11 Score=22.35 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=5.2
Q ss_pred ccCcccceeee
Q 031162 122 YPGSGIRHLWA 132 (164)
Q Consensus 122 fPG~d~r~gW~ 132 (164)
-||-++|.||+
T Consensus 16 ~Pg~~~rrgw~ 26 (26)
T 1lv4_A 16 GPGPQLXXXXX 26 (26)
T ss_dssp SSCTTC-----
T ss_pred CCccccccccC
Confidence 49999999996
No 3
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=29.33 E-value=23 Score=27.50 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=30.4
Q ss_pred cceeeEEEeecCCCCCCceEEEeecCCceeEEeeccccee
Q 031162 51 NEYQAKIILKPLSPNRPWKFIYEPIHQDVRILSKKIPVTK 90 (164)
Q Consensus 51 nd~~aKlVlKPl~~~~kWK~iyEP~~~DvrilsKKIPv~~ 90 (164)
++-.-.|.|.+...--.|+..|||-.|=+ +-|||+||
T Consensus 76 ha~lK~islr~~g~h~hwh~h~e~g~Gl~---eGk~p~tk 112 (129)
T 3i9v_7 76 HAKLKRIGLRLPRAHIHLHAHYEPGKGLV---TGKIPLTK 112 (129)
T ss_dssp SSSSCCEEEEETTTTEEEEEEEETTTEEE---ETTEECCH
T ss_pred hhhhcceEEecCCCcceeeeeecCCCccc---cCCCcccH
Confidence 34444578888888999999999998855 99999986
No 4
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=26.06 E-value=32 Score=22.43 Aligned_cols=43 Identities=40% Similarity=0.561 Sum_probs=28.9
Q ss_pred ChhhhhcccccchhhhhhhheeecceEEEeeeEEecCCCcceeeEEEeecCCCC
Q 031162 12 SWDELYSINLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSPN 65 (164)
Q Consensus 12 sw~ElY~inlmP~El~lKFRkevqG~rvG~NfEf~n~~~nd~~aKlVlKPl~~~ 65 (164)
..++.++| ..|+|++-++ |++-|-.++|.- .+ -+|+++|..|+
T Consensus 17 kv~~kGqI-tIPkeiR~~L-----gi~~Gd~l~i~~---~~--~~IiL~p~~p~ 59 (59)
T 1yfb_A 17 KVDELGRV-VIPIELRRTL-----GIAEKDALEIYV---DD--EKIILKKYKPN 59 (59)
T ss_dssp ECCTTCEE-ECCHHHHHHT-----TCCTTCEEEEEE---ET--TEEEEEECCCC
T ss_pred EECCCCEE-EeCHHHHHHc-----CCCCCCEEEEEE---EC--CEEEEEECCCC
Confidence 44455555 3688887665 677777788773 22 27999998764
No 5
>4gh9_A Polymerase cofactor VP35; viral polymerase, interferon inhibition, double stranded VIR viral protein,RNA binding protein; 1.65A {Marburg virus}
Probab=19.89 E-value=46 Score=26.25 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=37.9
Q ss_pred cccchhhhhhhheeecceEEEeeeEEecCCCcceeeEEEeecCCC--CCCceEEEeecCCceeE
Q 031162 20 NLMPSELFLKFRKEIEGFRVGVNLEFYNAPVNEYQAKIILKPLSP--NRPWKFIYEPIHQDVRI 81 (164)
Q Consensus 20 nlmP~El~lKFRkevqG~rvG~NfEf~n~~~nd~~aKlVlKPl~~--~~kWK~iyEP~~~Dvri 81 (164)
+..|..+++|.|..+ +..||--|---|.+| +|-|.-||+-.++.-+=
T Consensus 95 da~Ppvihirsrgdi---------------PraCQKSLRpvPPsPkIDrGWvcif~~q~gktl~ 143 (146)
T 4gh9_A 95 GVVPPVIRVKNFQTV---------------PRPCQKSLRAVPPNPTIDKGWVCVYSSEQGETRA 143 (146)
T ss_dssp TCCCCEEECSSGGGS---------------CGGGGGGEECCCSSCCGGGTEEEEEECTTSCEEE
T ss_pred cCCCCeEEeeccCCC---------------ChHHHhcCCCCCcCCccccceEEEEEccCCceec
Confidence 467888888888766 578998888888888 89999999988876543
No 6
>2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=19.66 E-value=1.2e+02 Score=22.68 Aligned_cols=70 Identities=24% Similarity=0.348 Sum_probs=45.0
Q ss_pred eEEEeeeEEecCCCcceeeEEEee--cCC---CCCCceEEEeecCCceeEEeecccceeeeeeeeecceeeeecccc
Q 031162 37 FRVGVNLEFYNAPVNEYQAKIILK--PLS---PNRPWKFIYEPIHQDVRILSKKIPVTKFLNLQVGIGHNFQLHATG 108 (164)
Q Consensus 37 ~rvG~NfEf~n~~~nd~~aKlVlK--Pl~---~~~kWK~iyEP~~~DvrilsKKIPv~~fLnlQvGIGH~F~~~~tG 108 (164)
+.+|-|.+.. +|.|+..-+-..- |.. ....|++|..|++.+++|--+--.--+.-+|+.|. +.||+.-++
T Consensus 16 Vsag~~~~i~-LP~n~v~L~a~v~pd~~~~~~ysyeWtli~gP~d~~~~~~~~~~~tlkLS~L~eG~-Y~FqltVtd 90 (113)
T 2e7m_A 16 VSAGDNLIIT-LPDNEVELKAFVAPAPPVETTYNYEWNLISHPTDYQGEIKQGHKQTLNLSQLSVGL-YVFKVTVSS 90 (113)
T ss_dssp EECCSCEEEE-TTCCCEEEECEEESCCCSSCCCCCBCCEEECCTTCCCCCCTTSSSEEEECSCCSEE-EEECCEEEE
T ss_pred EEcCCCeEEE-CCCCcEEEEEEECCCCCCCCEEeeEEEEecCCCCCceEEecCCCCeeEecCcCcEE-EEEEEEEEC
Confidence 3456666666 8888876544444 433 46789999999977777655544444556677665 346665554
No 7
>3rws_A MTN13 protein; zeatin, cytokinin, hormone, lucerne, nodulin, NODU plant protein; HET: ZEA; 1.85A {Medicago truncatula}
Probab=16.48 E-value=84 Score=23.62 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.3
Q ss_pred CCcceeeEEEeecCCCC---CCceEEEeecCCcee
Q 031162 49 PVNEYQAKIILKPLSPN---RPWKFIYEPIHQDVR 80 (164)
Q Consensus 49 ~~nd~~aKlVlKPl~~~---~kWK~iyEP~~~Dvr 80 (164)
|...|.+-+.+.|.... -+|...|+|+.+|..
T Consensus 99 p~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~d~~ 133 (168)
T 3rws_A 99 PLEKIVFEFKLVPTPEEGCIVKSTTKYYTKGDDIE 133 (168)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEEEEEECSSSCC
T ss_pred CceEEEEEEEEEECCCCceEEEEEEEEEECCCccC
Confidence 35567888888886543 679999999988654
No 8
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=14.30 E-value=1.4e+02 Score=21.40 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=19.2
Q ss_pred cCCCCCCceEEEeecCCceeEEeecccc
Q 031162 61 PLSPNRPWKFIYEPIHQDVRILSKKIPV 88 (164)
Q Consensus 61 Pl~~~~kWK~iyEP~~~DvrilsKKIPv 88 (164)
|......||++.+ ..+++|.+|+.|=
T Consensus 23 ~~~~~~~W~~~~~--~~~v~v~~~~~~~ 48 (214)
T 1ln1_A 23 PALAGADWQLLVE--TSGISIYRLLDKK 48 (214)
T ss_dssp CCCTTTTCEEEEE--ETTEEEEEEEETT
T ss_pred CCCCCCCcEEEEE--CCCeEEEEeccCC
Confidence 3334568999998 5689999997653
No 9
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=12.94 E-value=23 Score=24.61 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=17.5
Q ss_pred cCCceeEEeecccceeeeeeeee
Q 031162 75 IHQDVRILSKKIPVTKFLNLQVG 97 (164)
Q Consensus 75 ~~~DvrilsKKIPv~~fLnlQvG 97 (164)
..=.+++=+.++|+..+|+||+|
T Consensus 21 v~l~~~Lg~~~ltl~ell~L~~G 43 (96)
T 1o6a_A 21 LKVTVELGRTRMTLKRVLEMIHG 43 (96)
T ss_dssp EEEEEEEEEEEEEHHHHHHCCTT
T ss_pred EEEEEEEECcEeEHHHHhCCCCC
Confidence 33456777888999999998865
No 10
>2gia_A Mitochondrial RNA-binding protein 2; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei} SCOP: d.18.1.4 PDB: 2gid_A 2gje_A
Probab=11.61 E-value=24 Score=28.80 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=17.3
Q ss_pred ccccceeEEeeeecc-----ccccCcccceeeee
Q 031162 105 HATGWKWKLTTCLVE-----MEYPGSGIRHLWAC 133 (164)
Q Consensus 105 ~~tGWkWKltt~lG~-----~ifPG~d~r~gW~a 133 (164)
.+||-||+-.+.-+. .+=|.||| ++||.
T Consensus 21 ratg~~wr~~s~~~~R~RR~~lPPAFDv-VHWnD 53 (195)
T 2gia_A 21 RATGGKWRRPSLAQQRARRAQLPPAFDV-VHWND 53 (195)
T ss_dssp ------CCCHHHHHHHHHHHHSCCEEEE-EECCG
T ss_pred cccCcccccchhhhhcccCCCCCCccce-eeccC
Confidence 688989987666555 88899998 78986
Done!