Query 031164
Match_columns 164
No_of_seqs 139 out of 939
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 16:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w4s_A Polybromo, polybromo 1 100.0 5E-37 1.7E-41 227.2 9.0 134 3-139 9-145 (174)
2 3swr_A DNA (cytosine-5)-methyl 100.0 1.1E-28 3.8E-33 220.7 14.2 128 3-135 141-280 (1002)
3 3av4_A DNA (cytosine-5)-methyl 99.9 4.8E-27 1.6E-31 214.4 14.4 128 3-135 452-592 (1330)
4 4dov_A ORC1, origin recognitio 99.9 3.9E-25 1.3E-29 158.9 15.5 125 8-135 21-159 (163)
5 3swr_A DNA (cytosine-5)-methyl 99.9 1E-22 3.5E-27 182.4 13.6 128 5-134 319-499 (1002)
6 4ft4_B DNA (cytosine-5)-methyl 99.9 3.4E-22 1.2E-26 176.4 10.3 125 6-134 43-178 (784)
7 3av4_A DNA (cytosine-5)-methyl 99.9 2.1E-21 7.3E-26 177.5 11.9 128 5-134 631-810 (1330)
8 2fl7_A Regulatory protein SIR3 99.7 5.9E-17 2E-21 122.8 11.4 124 14-138 44-192 (232)
9 1m4z_A Origin recognition comp 99.7 7E-17 2.4E-21 122.8 11.1 125 14-139 44-193 (238)
10 1wep_A PHF8; structural genomi 98.2 2.9E-07 1E-11 58.8 1.6 35 130-164 3-37 (79)
11 3kqi_A GRC5, PHD finger protei 97.9 2.8E-06 9.6E-11 53.6 0.6 29 136-164 7-35 (75)
12 1we9_A PHD finger family prote 97.7 9E-06 3.1E-10 49.6 1.5 26 139-164 6-32 (64)
13 2vpb_A Hpygo1, pygopus homolog 97.7 9E-06 3.1E-10 49.9 0.9 22 143-164 13-35 (65)
14 2kgg_A Histone demethylase jar 97.7 1.1E-05 3.7E-10 47.3 1.0 24 141-164 5-29 (52)
15 1wee_A PHD finger family prote 97.5 2.8E-05 9.5E-10 48.6 1.2 29 136-164 13-41 (72)
16 3o7a_A PHD finger protein 13 v 97.4 3.1E-05 1.1E-09 45.3 0.4 24 140-164 5-28 (52)
17 1wem_A Death associated transc 97.3 6.4E-05 2.2E-09 47.3 1.0 27 137-164 14-40 (76)
18 3o70_A PHD finger protein 13; 97.3 5.5E-05 1.9E-09 46.7 0.6 27 137-164 17-43 (68)
19 3kv5_D JMJC domain-containing 96.8 0.00023 8E-09 59.7 0.8 31 134-164 32-62 (488)
20 1wew_A DNA-binding family prot 96.6 0.00067 2.3E-08 42.8 1.5 27 137-164 14-42 (78)
21 2k16_A Transcription initiatio 95.8 0.0023 7.8E-08 39.9 0.8 25 139-164 18-43 (75)
22 2lv9_A Histone-lysine N-methyl 95.5 0.0034 1.2E-07 41.3 0.8 24 140-164 29-52 (98)
23 2rsd_A E3 SUMO-protein ligase 95.0 0.0078 2.7E-07 36.8 1.2 27 137-164 8-36 (68)
24 1x4i_A Inhibitor of growth pro 94.1 0.015 5.2E-07 35.8 1.1 25 138-164 5-32 (70)
25 1wen_A Inhibitor of growth fam 94.0 0.016 5.5E-07 35.7 1.0 26 137-164 14-42 (71)
26 3c6w_A P28ING5, inhibitor of g 94.0 0.0087 3E-07 35.6 -0.2 26 137-164 7-35 (59)
27 1weu_A Inhibitor of growth fam 93.9 0.013 4.6E-07 37.9 0.5 26 137-164 34-62 (91)
28 2g6q_A Inhibitor of growth pro 93.6 0.011 3.7E-07 35.5 -0.2 26 137-164 9-37 (62)
29 2jmi_A Protein YNG1, ING1 homo 93.3 0.022 7.6E-07 36.8 0.9 26 137-164 24-52 (90)
30 2vnf_A ING 4, P29ING4, inhibit 93.3 0.013 4.6E-07 34.8 -0.2 26 137-164 8-36 (60)
31 2l7p_A Histone-lysine N-methyl 92.8 0.047 1.6E-06 35.9 1.8 19 145-163 19-37 (100)
32 3pur_A Lysine-specific demethy 92.0 0.049 1.7E-06 45.9 1.4 20 145-164 49-68 (528)
33 1f62_A Transcription factor WS 88.2 0.14 4.9E-06 29.0 0.8 21 143-164 5-25 (51)
34 2e61_A Zinc finger CW-type PWW 84.7 0.54 1.9E-05 28.6 2.1 17 147-163 11-29 (69)
35 2a7y_A Hypothetical protein RV 82.2 1.7 5.8E-05 27.3 3.7 40 24-65 7-46 (83)
36 2ku3_A Bromodomain-containing 78.1 0.96 3.3E-05 27.6 1.6 25 140-164 17-43 (71)
37 4hcz_A PHD finger protein 1; p 76.8 3.5 0.00012 24.0 3.6 28 22-51 3-30 (58)
38 2m0o_A PHD finger protein 1; t 73.7 3.4 0.00012 25.5 3.2 29 21-51 25-53 (79)
39 2gfu_A DNA mismatch repair pro 73.0 2.4 8.2E-05 28.9 2.7 44 21-66 21-69 (134)
40 2yt5_A Metal-response element- 72.4 1.5 5.1E-05 25.9 1.4 25 140-164 7-33 (66)
41 2e6r_A Jumonji/ARID domain-con 71.6 0.7 2.4E-05 29.6 -0.3 24 140-164 17-41 (92)
42 2l43_A N-teminal domain from h 69.9 1.5 5E-05 27.9 0.9 25 140-164 26-52 (88)
43 3zzs_A Transcription attenuati 69.7 7.2 0.00025 22.9 3.8 48 59-106 13-60 (65)
44 3llr_A DNA (cytosine-5)-methyl 69.3 4.1 0.00014 28.6 3.3 44 21-67 15-61 (154)
45 2lo3_A SAGA-associated factor 69.3 4 0.00014 22.2 2.5 17 146-162 9-25 (44)
46 2eqj_A Metal-response element- 68.9 6.2 0.00021 23.6 3.5 28 22-51 13-40 (66)
47 2ro0_A Histone acetyltransfera 67.4 11 0.00039 24.0 4.8 28 22-52 23-50 (92)
48 2xk0_A Polycomb protein PCL; t 66.7 7.2 0.00025 23.5 3.5 26 22-49 15-40 (69)
49 1xwh_A Autoimmune regulator; P 65.5 2.3 7.8E-05 25.3 1.1 22 139-164 8-30 (66)
50 3shb_A E3 ubiquitin-protein li 65.0 1.6 5.3E-05 27.1 0.3 20 144-164 32-51 (77)
51 3qby_A Hepatoma-derived growth 64.2 4.9 0.00017 25.6 2.7 41 21-64 4-46 (94)
52 1ri0_A Hepatoma-derived growth 64.0 3.2 0.00011 27.4 1.8 42 21-65 18-61 (110)
53 2l8d_A Lamin-B receptor; DNA b 63.0 8.7 0.0003 22.9 3.3 29 21-50 8-36 (66)
54 1wev_A Riken cDNA 1110020M19; 62.6 3.4 0.00012 26.1 1.6 25 140-164 17-43 (88)
55 2e6s_A E3 ubiquitin-protein li 62.2 3.3 0.00011 25.5 1.5 20 144-164 32-51 (77)
56 4fu6_A PC4 and SFRS1-interacti 60.9 5.4 0.00019 27.7 2.6 43 21-65 21-64 (153)
57 2e5p_A Protein PHF1, PHD finge 60.7 24 0.00083 21.1 5.0 29 21-51 8-36 (68)
58 3zte_A Tryptophan operon RNA-b 60.7 11 0.00036 23.0 3.4 49 59-107 21-69 (78)
59 3asl_A E3 ubiquitin-protein li 60.1 2.2 7.4E-05 25.8 0.3 20 144-164 24-43 (70)
60 1gtf_A Trp RNA-binding attenua 59.7 12 0.00039 22.5 3.4 48 59-106 17-64 (74)
61 2dig_A Lamin-B receptor; tudor 59.1 12 0.0004 22.4 3.4 29 21-50 11-39 (68)
62 2daq_A WHSC1L1 protein, isofor 58.5 4.5 0.00015 26.4 1.7 29 19-49 5-33 (110)
63 1khc_A DNA cytosine-5 methyltr 58.4 5.1 0.00017 27.9 2.0 44 21-66 10-55 (147)
64 3v43_A Histone acetyltransfera 55.0 4.1 0.00014 26.8 1.1 24 141-164 63-87 (112)
65 2e6z_A Transcription elongatio 54.3 8.1 0.00028 22.3 2.2 40 21-66 6-45 (59)
66 2l89_A PWWP domain-containing 53.2 19 0.00065 23.4 4.1 43 21-65 4-52 (108)
67 3bcw_A Uncharacterized protein 53.0 17 0.00058 24.1 3.9 20 17-36 85-104 (123)
68 1nz9_A Transcription antitermi 52.5 16 0.00056 20.7 3.3 43 22-68 4-46 (58)
69 1o5u_A Novel thermotoga mariti 51.9 16 0.00053 23.3 3.5 23 14-36 62-85 (101)
70 2ysm_A Myeloid/lymphoid or mix 51.2 5.5 0.00019 26.0 1.2 23 141-164 56-79 (111)
71 2jrp_A Putative cytoplasmic pr 50.7 5 0.00017 25.1 0.9 20 143-162 7-26 (81)
72 3p8d_A Medulloblastoma antigen 50.3 19 0.00066 21.5 3.4 28 22-51 6-33 (67)
73 3lwc_A Uncharacterized protein 49.7 13 0.00045 24.4 2.9 22 14-35 72-93 (119)
74 2opk_A Hypothetical protein; p 49.0 14 0.00048 23.7 3.0 22 14-35 66-89 (112)
75 2rnz_A Histone acetyltransfera 49.0 34 0.0012 21.9 4.6 28 22-52 25-52 (94)
76 2e2z_A TIM15; protein import, 48.5 5.6 0.00019 25.9 0.8 17 147-163 31-47 (100)
77 4axo_A EUTQ, ethanolamine util 46.4 14 0.00047 25.7 2.7 22 14-35 97-118 (151)
78 2kwj_A Zinc finger protein DPF 46.4 7.1 0.00024 25.7 1.2 20 144-164 64-83 (114)
79 2e5q_A PHD finger protein 19; 46.4 16 0.00054 21.5 2.5 29 21-51 6-34 (63)
80 2puy_A PHD finger protein 21A; 45.4 6 0.0002 22.8 0.6 20 141-164 7-27 (60)
81 2l5u_A Chromodomain-helicase-D 44.3 7 0.00024 22.7 0.8 24 137-164 9-33 (61)
82 2yql_A PHD finger protein 21A; 43.6 6.6 0.00023 22.3 0.6 21 140-164 10-31 (56)
83 2pyt_A Ethanolamine utilizatio 43.4 17 0.00057 24.4 2.7 22 14-35 88-109 (133)
84 3ask_A E3 ubiquitin-protein li 43.3 7.7 0.00026 29.0 1.0 46 22-68 2-52 (226)
85 1y9q_A Transcriptional regulat 42.4 72 0.0025 22.1 6.2 48 14-74 139-186 (192)
86 2ozj_A Cupin 2, conserved barr 41.9 24 0.00082 22.2 3.2 23 14-36 71-93 (114)
87 2f5k_A MORF-related gene 15 is 39.5 47 0.0016 21.5 4.3 28 21-51 21-48 (102)
88 1vq8_T 50S ribosomal protein L 38.9 34 0.0012 22.9 3.6 29 21-51 41-69 (120)
89 2l9z_A PR domain zinc finger p 38.5 4.9 0.00017 21.4 -0.5 12 153-164 10-21 (39)
90 4a4f_A SurviVal of motor neuro 38.3 39 0.0013 19.6 3.5 29 21-50 7-35 (64)
91 1wgs_A MYST histone acetyltran 38.0 61 0.0021 21.9 4.9 29 21-51 11-39 (133)
92 2do3_A Transcription elongatio 37.8 32 0.0011 20.7 3.0 29 21-51 16-44 (69)
93 2j5u_A MREC protein; bacterial 37.2 1.1E+02 0.0039 22.8 6.8 45 22-66 169-215 (255)
94 2zjr_R 50S ribosomal protein L 37.2 16 0.00054 24.3 1.7 28 22-51 15-42 (115)
95 3j21_U 50S ribosomal protein L 37.1 42 0.0014 22.4 3.8 29 21-51 44-72 (121)
96 2vpv_A Protein MIF2, MIF2P; nu 36.7 24 0.00082 24.9 2.7 22 14-35 123-144 (166)
97 1v70_A Probable antibiotics sy 36.6 29 0.001 20.9 2.9 21 15-35 63-83 (105)
98 1ard_A Yeast transcription fac 36.3 13 0.00044 16.4 0.9 10 155-164 3-12 (29)
99 4h7l_A Uncharacterized protein 36.3 17 0.00058 25.5 1.9 23 14-36 81-103 (157)
100 2lri_C Autoimmune regulator; Z 35.9 9.6 0.00033 22.6 0.4 12 153-164 23-34 (66)
101 3fjs_A Uncharacterized protein 34.7 25 0.00086 22.5 2.4 23 14-36 69-91 (114)
102 3v2d_Y 50S ribosomal protein L 34.7 41 0.0014 22.1 3.4 29 22-52 6-34 (110)
103 2i45_A Hypothetical protein; n 34.5 29 0.00097 21.6 2.7 23 14-36 61-84 (107)
104 2pfw_A Cupin 2, conserved barr 34.1 33 0.0011 21.5 2.9 22 14-35 67-88 (116)
105 3h8z_A FragIle X mental retard 34.0 46 0.0016 22.4 3.7 28 22-49 60-90 (128)
106 2m0d_A Zinc finger and BTB dom 33.7 11 0.00038 16.7 0.4 11 154-164 3-13 (30)
107 2jne_A Hypothetical protein YF 33.7 4.5 0.00015 26.2 -1.4 24 139-162 32-56 (101)
108 2lcc_A AT-rich interactive dom 33.6 20 0.0007 21.8 1.7 30 22-51 5-35 (76)
109 3m9q_A Protein MALE-specific l 33.3 84 0.0029 20.2 4.7 36 17-52 14-51 (101)
110 2b8m_A Hypothetical protein MJ 33.2 40 0.0014 21.2 3.3 22 14-35 60-82 (117)
111 1mhn_A SurviVal motor neuron p 33.1 52 0.0018 18.6 3.4 28 22-50 3-30 (59)
112 1znf_A 31ST zinc finger from X 32.9 15 0.00052 15.8 0.8 10 155-164 2-11 (27)
113 3kgz_A Cupin 2 conserved barre 32.5 31 0.001 23.7 2.7 22 14-35 77-98 (156)
114 1mm2_A MI2-beta; PHD, zinc fin 32.5 14 0.00047 21.4 0.7 22 139-164 9-31 (61)
115 3p8b_B Transcription antitermi 32.1 46 0.0016 22.7 3.6 43 21-67 90-132 (152)
116 2lvt_A Zinc finger and BTB dom 38.2 9.7 0.00033 17.0 0.0 10 155-164 3-12 (29)
117 2oqk_A Putative translation in 31.7 38 0.0013 22.4 2.9 26 23-50 71-96 (117)
118 2lvu_A Zinc finger and BTB dom 37.5 10 0.00035 16.5 0.0 10 155-164 3-12 (26)
119 2gu9_A Tetracenomycin polyketi 31.3 31 0.0011 21.2 2.4 21 15-35 58-78 (113)
120 1yhf_A Hypothetical protein SP 31.1 36 0.0012 21.3 2.7 22 15-36 74-95 (115)
121 4e2q_A Ureidoglycine aminohydr 31.1 1.6E+02 0.0055 22.2 6.8 23 14-36 103-126 (266)
122 3vhs_A ATPase wrnip1; zinc fin 31.1 24 0.00083 16.9 1.3 10 153-162 5-14 (29)
123 2eko_A Histone acetyltransfera 31.1 48 0.0016 20.7 3.2 32 21-52 8-41 (87)
124 2l6l_A DNAJ homolog subfamily 30.8 15 0.0005 25.3 0.8 27 138-164 111-143 (155)
125 1paa_A Yeast transcription fac 30.6 18 0.00062 16.0 0.9 10 155-164 3-12 (30)
126 1rik_A E6APC1 peptide; E6-bind 30.4 14 0.00049 16.3 0.5 10 155-164 3-12 (29)
127 2kvh_A Zinc finger and BTB dom 30.2 14 0.0005 16.1 0.5 10 155-164 4-13 (27)
128 2equ_A PHD finger protein 20-l 30.2 57 0.0019 19.7 3.3 28 21-50 8-35 (74)
129 4i4a_A Similar to unknown prot 30.1 37 0.0013 21.7 2.7 21 15-35 68-88 (128)
130 3qii_A PHD finger protein 20; 29.9 54 0.0018 20.5 3.2 29 21-51 20-48 (85)
131 2kvf_A Zinc finger and BTB dom 29.7 15 0.0005 16.1 0.5 10 155-164 4-13 (28)
132 1klr_A Zinc finger Y-chromosom 29.7 18 0.00062 15.9 0.8 10 155-164 3-12 (30)
133 3l2h_A Putative sugar phosphat 29.5 41 0.0014 22.7 2.9 20 15-34 82-101 (162)
134 3r8s_U 50S ribosomal protein L 29.5 52 0.0018 21.3 3.2 28 22-51 3-30 (102)
135 2zkr_t 60S ribosomal protein L 29.5 47 0.0016 22.9 3.2 29 21-51 47-76 (145)
136 3ibm_A Cupin 2, conserved barr 29.3 41 0.0014 23.2 2.9 23 14-36 89-111 (167)
137 3cew_A Uncharacterized cupin p 29.3 31 0.0011 22.1 2.2 21 15-35 62-82 (125)
138 3oa6_A MALE-specific lethal 3 29.2 1.2E+02 0.004 19.9 4.9 33 21-53 18-52 (110)
139 3jzv_A Uncharacterized protein 28.6 43 0.0015 23.2 2.9 22 14-35 86-107 (166)
140 2m0e_A Zinc finger and BTB dom 27.8 20 0.00069 15.5 0.8 10 155-164 3-12 (29)
141 3h8u_A Uncharacterized conserv 27.6 30 0.001 22.1 1.9 22 15-36 74-96 (125)
142 4e2g_A Cupin 2 conserved barre 27.6 38 0.0013 21.5 2.4 21 15-35 75-95 (126)
143 2lvr_A Zinc finger and BTB dom 33.5 13 0.00044 16.5 0.0 10 155-164 4-13 (30)
144 2qqr_A JMJC domain-containing 27.3 68 0.0023 21.3 3.6 28 21-50 4-31 (118)
145 3u5e_Y L33, YL33, 60S ribosoma 27.3 66 0.0023 21.7 3.5 29 21-51 48-76 (127)
146 1rim_A E6APC2 peptide; E6-bind 27.1 21 0.00071 16.7 0.8 10 155-164 3-12 (33)
147 3d82_A Cupin 2, conserved barr 27.1 32 0.0011 20.8 1.9 22 15-36 64-85 (102)
148 2arc_A ARAC, arabinose operon 26.9 52 0.0018 21.7 3.1 22 15-36 52-73 (164)
149 3rns_A Cupin 2 conserved barre 26.3 44 0.0015 24.3 2.8 23 14-36 70-92 (227)
150 1o4t_A Putative oxalate decarb 26.3 37 0.0013 22.2 2.2 21 15-35 92-112 (133)
151 2elm_A Zinc finger protein 406 26.3 18 0.00063 17.4 0.5 12 153-164 8-19 (37)
152 2elq_A Zinc finger protein 406 26.2 19 0.00063 17.1 0.5 12 153-164 8-19 (36)
153 2els_A Zinc finger protein 406 25.8 23 0.0008 16.7 0.9 12 153-164 8-19 (36)
154 1g5v_A SurviVal motor neuron p 25.7 82 0.0028 19.6 3.6 28 22-50 10-37 (88)
155 3iz5_Y 60S ribosomal protein L 25.5 73 0.0025 22.1 3.6 29 21-51 47-75 (150)
156 2rsn_A Chromo domain-containin 25.5 1.1E+02 0.0039 18.2 4.3 30 38-68 20-49 (75)
157 2qf4_A Cell shape determining 25.4 1.1E+02 0.0039 21.3 4.8 46 21-66 107-154 (172)
158 4hae_A CDY-like 2, chromodomai 25.3 1.2E+02 0.0041 18.4 5.1 27 38-65 22-48 (81)
159 2bnm_A Epoxidase; oxidoreducta 25.1 60 0.0021 22.5 3.3 17 19-35 162-178 (198)
160 2m0f_A Zinc finger and BTB dom 24.8 20 0.00069 15.6 0.4 9 155-163 3-11 (29)
161 2fqp_A Hypothetical protein BP 24.7 51 0.0017 20.1 2.5 22 14-35 52-75 (97)
162 1srk_A Zinc finger protein ZFP 24.5 21 0.0007 16.7 0.5 11 154-164 7-17 (35)
163 3m9p_A MALE-specific lethal 3 24.4 1.5E+02 0.0052 19.3 5.0 35 18-52 15-51 (110)
164 2kvg_A Zinc finger and BTB dom 24.3 14 0.00047 16.3 -0.2 9 155-163 4-12 (27)
165 4a17_S RPL26, 60S ribosomal pr 24.0 85 0.0029 21.4 3.6 28 22-51 48-75 (135)
166 2elr_A Zinc finger protein 406 23.8 26 0.00089 16.4 0.8 11 154-164 9-19 (36)
167 2q30_A Uncharacterized protein 23.7 44 0.0015 20.5 2.1 18 18-35 73-90 (110)
168 1rc6_A Hypothetical protein YL 23.6 47 0.0016 24.6 2.5 23 14-36 94-116 (261)
169 2jvv_A Transcription antitermi 23.6 1.1E+02 0.0037 21.4 4.3 44 22-69 127-170 (181)
170 1x4u_A Zinc finger, FYVE domai 23.6 43 0.0015 20.5 1.9 29 133-161 8-37 (84)
171 4bbq_A Lysine-specific demethy 23.5 16 0.00055 23.8 -0.1 14 151-164 72-85 (117)
172 3i7d_A Sugar phosphate isomera 23.4 61 0.0021 22.1 2.9 20 15-34 79-98 (163)
173 2elx_A Zinc finger protein 406 22.8 23 0.0008 16.4 0.5 11 154-164 7-17 (35)
174 2elt_A Zinc finger protein 406 22.8 30 0.001 16.1 0.9 12 153-164 8-19 (36)
175 2elo_A Zinc finger protein 406 22.7 17 0.00059 17.3 -0.1 11 154-164 9-19 (37)
176 1at0_A 17-hedgehog; developmen 22.4 1.1E+02 0.0037 20.6 4.0 28 22-50 91-118 (145)
177 1z2q_A LM5-1; membrane protein 22.3 38 0.0013 20.8 1.5 30 133-162 15-45 (84)
178 1p7a_A BF3, BKLF, kruppel-like 22.1 26 0.0009 16.6 0.6 11 154-164 11-21 (37)
179 3s6w_A Tudor domain-containing 21.9 81 0.0028 17.3 2.8 28 23-51 2-29 (54)
180 2z1c_A Hydrogenase expression/ 21.9 46 0.0016 20.2 1.8 12 23-34 36-47 (75)
181 2dgy_A MGC11102 protein; EIF-1 21.8 69 0.0024 21.0 2.8 14 22-35 53-66 (111)
182 2elv_A Zinc finger protein 406 21.7 25 0.00086 16.5 0.5 11 154-164 9-19 (36)
183 2oa2_A BH2720 protein; 1017534 21.4 78 0.0027 21.0 3.1 15 21-35 90-104 (148)
184 2kfq_A FP1; protein, de novo p 21.2 22 0.00074 16.5 0.1 10 155-164 3-12 (32)
185 1vj2_A Novel manganese-contain 21.1 48 0.0016 21.4 1.9 21 15-35 82-102 (126)
186 2eon_A ZFP-95, zinc finger pro 21.1 32 0.0011 17.4 0.8 11 154-164 12-22 (46)
187 1jt8_A EIF-1A, probable transl 21.0 76 0.0026 20.4 2.8 26 23-49 59-84 (102)
188 3ht1_A REMF protein; cupin fol 21.0 50 0.0017 21.4 2.0 20 16-35 76-95 (145)
189 2elp_A Zinc finger protein 406 20.9 27 0.00092 16.5 0.5 11 154-164 9-19 (37)
190 1e0b_A SWI6 protein; chromatin 20.9 1.4E+02 0.0048 17.6 4.2 24 39-63 10-33 (68)
191 1sfn_A Conserved hypothetical 20.7 56 0.0019 24.0 2.4 23 14-36 81-103 (246)
192 2ytb_A Zinc finger protein 32; 20.6 29 0.001 17.0 0.6 11 154-164 11-21 (42)
193 2f4p_A Hypothetical protein TM 20.2 91 0.0031 20.7 3.2 22 14-35 81-103 (147)
194 2eof_A Zinc finger protein 268 20.1 28 0.00094 17.3 0.4 11 154-164 12-22 (44)
195 1x82_A Glucose-6-phosphate iso 20.0 90 0.0031 21.9 3.3 15 21-35 121-135 (190)
196 2o8q_A Hypothetical protein; c 20.0 58 0.002 21.0 2.1 22 14-35 77-99 (134)
No 1
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=100.00 E-value=5e-37 Score=227.18 Aligned_cols=134 Identities=27% Similarity=0.386 Sum_probs=105.0
Q ss_pred CCCCCceeeeeEEEcCcCcEEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeecccccCCcccccCCCCe
Q 031164 3 KPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82 (164)
Q Consensus 3 ~~~~~r~~y~~~~i~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~~~~~~~~E 82 (164)
+++++|.+|++++++|. +|++||+|||.+++++++++||+|++||++.+|+ ++++|+|||||+||.++....+.+||
T Consensus 9 ~~~~~r~~y~~~~~~g~--~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~-~~v~v~WfyRPeet~~~~~~~~~~~E 85 (174)
T 1w4s_A 9 LSSLHRTYSQDCSFKNS--MYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGE-KWLYGCWFYRPNETFHLATRKFLEKE 85 (174)
T ss_dssp -------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCC-EEEEEEEEECGGGSCCCTTCEEETTE
T ss_pred ccCCCcEEeEEEEECCE--EEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCC-EEEEEEEecCHHHcccccCCcCCCCe
Confidence 56788999999999987 9999999999998866789999999999999998 99999999999999976544456999
Q ss_pred eEEecccccccccceeeccEEEecccccccCC---CCCCeEEEeeeeeccCCcccCCCCc
Q 031164 83 VFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA---VGNDDFFCRFEYNSSSGAFNPDRVA 139 (164)
Q Consensus 83 Lf~s~~~d~~~~~~I~~kc~V~~~~~~~~~~~---~~~~~ffcr~~yd~~~~~f~p~~~~ 139 (164)
||+|++.+++|+++|.|||.|++.++|.++.+ .+.++||||+.||+.+++|.+.+.+
T Consensus 86 vF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~~~~~~dvF~c~~~Yd~~~~~f~~i~~w 145 (174)
T 1w4s_A 86 VFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKLW 145 (174)
T ss_dssp EEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEETTCCGGGEEEEEEEEETTTTEEEECSSC
T ss_pred eEEeCCcceecHHHeeeeEEEEECchhhhcCcCCCCCCCEEEEeEEEccccCeEccCccC
Confidence 99999999999999999999999999987754 3468899999999999999965443
No 2
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.96 E-value=1.1e-28 Score=220.65 Aligned_cols=128 Identities=20% Similarity=0.392 Sum_probs=113.7
Q ss_pred CCCCCceeeeeEEEcCcCcEEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeecccccCCcccccCCCCe
Q 031164 3 KPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82 (164)
Q Consensus 3 ~~~~~r~~y~~~~i~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~~~~~~~~E 82 (164)
|+..++.+|+++.++|. +|++||+|+|.+++++.++|||+|++||++.+|+ +||+|+|||||+||.+++. ++++|
T Consensus 141 k~~~~~~~Y~s~~v~g~--~i~VGD~V~v~~~d~~~ppyIarIe~m~ed~~g~-k~~~v~Wf~rp~ET~lg~~--~~~~E 215 (1002)
T 3swr_A 141 KTDGKKSYYKKVCIDAE--TLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNG-QMFHAHWFCAGTDTVLGAT--SDPLE 215 (1002)
T ss_dssp CCBTTEEECSEEEETTE--EEETTCEEEECBSSTTSCCEEEEEEEEEEETTTE-EEEEEEEEEEGGGSTTGGG--SCTTE
T ss_pred ccccCceeeeEEEECCE--EEecCCEEEEecCCCCCCceEEEEEEEeecCCCC-eEEEEEEEecchhcccccC--CCCCc
Confidence 56789999999999986 9999999999998877788999999999998888 9999999999999999988 78999
Q ss_pred eEEecccccccccceeeccEEEeccc---cccc------CC---CCCCeEEEeeeeeccCCcccC
Q 031164 83 VFLSDHHDIQSADTIEGKCTVHSFKS---YTKL------DA---VGNDDFFCRFEYNSSSGAFNP 135 (164)
Q Consensus 83 Lf~s~~~d~~~~~~I~~kc~V~~~~~---~~~~------~~---~~~~~ffcr~~yd~~~~~f~p 135 (164)
||+|++++.+++++|.|||.|++... |... .. ..+++|||+..||+++++|..
T Consensus 216 lFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~~~~~ffc~~~Y~~~~~~F~~ 280 (1002)
T 3swr_A 216 LFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFES 280 (1002)
T ss_dssp EEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCCCCTSEEEEEEEETTTTEEEC
T ss_pred eEeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccCCCCeEEEEEEECCCCCcccC
Confidence 99999999999999999999998654 2111 11 236899999999999999994
No 3
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.94 E-value=4.8e-27 Score=214.42 Aligned_cols=128 Identities=21% Similarity=0.405 Sum_probs=110.0
Q ss_pred CCCCCceeeeeEEEcCcCcEEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeecccccCCcccccCCCCe
Q 031164 3 KPKAPRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGRRQFHGSKE 82 (164)
Q Consensus 3 ~~~~~r~~y~~~~i~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~~~~~~~~E 82 (164)
|+.+|+.||+++.++|. +|++||+|||.+++++.++|||+|++||++.+|. +||+|+|||||+||.+++. ++++|
T Consensus 452 k~~~~~~~Y~~~~v~g~--~~~vGD~V~v~~~d~~~p~yiarIe~iwe~~dg~-~~~~~~WfyRp~ETvlg~~--~~~rE 526 (1330)
T 3av4_A 452 KIEENRTYYQKVSIDEE--MLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQ-MMFHAHWFCAGTDTVLGAT--SDPLE 526 (1330)
T ss_dssp CCC--CEEECSEEEESS--EEETTCEEEECBCCSSCCCEEEEEEEEEEETTCC-EEEEEEEEEEGGGSTTGGG--SCTTE
T ss_pred eccCCceeeeEEEECCE--EEecCCEEEEeCCCCCCCCEEEEEeeeeecCCCC-EEEEEEEEEchHHcccccc--cCCCe
Confidence 67789999999999997 9999999999988765678999999999999998 9999999999999998875 78999
Q ss_pred eEEecccccccccceeeccEEEeccc---ccccC--------C--CCCCeEEEeeeeeccCCcccC
Q 031164 83 VFLSDHHDIQSADTIEGKCTVHSFKS---YTKLD--------A--VGNDDFFCRFEYNSSSGAFNP 135 (164)
Q Consensus 83 Lf~s~~~d~~~~~~I~~kc~V~~~~~---~~~~~--------~--~~~~~ffcr~~yd~~~~~f~p 135 (164)
||+|+++|++|+++|.|||.|++..+ |.... . ...+.|||++.||+..++|..
T Consensus 527 lFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~C~~~Yd~~~~~F~~ 592 (1330)
T 3av4_A 527 LFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEYARFES 592 (1330)
T ss_dssp EEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC-------------CCEEEEEEEETTTTEEEC
T ss_pred EEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccccccCCceEEEeEECCccCccCC
Confidence 99999999999999999999999655 42111 1 245689999999999999983
No 4
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=99.93 E-value=3.9e-25 Score=158.86 Aligned_cols=125 Identities=22% Similarity=0.367 Sum_probs=103.6
Q ss_pred ceeeeeEEEcCc---CcEEccCCEEEEecCCCCCCCeEEEEeEEeecC--CCCeEEEEEEEeecccccCCccccc----C
Q 031164 8 RRTLESYTVKSI---SKTIKPGDCVLMRPSEPSKPSYVAKIERIESDA--RGANVKVHVRWYYRPEESIGGRRQF----H 78 (164)
Q Consensus 8 r~~y~~~~i~g~---~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~--~g~~~~v~v~Wfyrp~e~~~~~~~~----~ 78 (164)
-.+|+++.++.. ..++++||+|+|.+++. +.||||+|+.|+++. ....+.++||||+||+|++.+.... +
T Consensus 21 ~~~Y~~~~v~~~~~~~~~i~vGd~VLI~~~D~-~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~ 99 (163)
T 4dov_A 21 QQMYREICMKINDGSEIHIKVGQFVLIQGEDN-KKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSP 99 (163)
T ss_dssp EEEESEEEEECTTSCEEEEETTCEEEECCSSS-SCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCC
T ss_pred ceeeeEEEEecCCCCCeEEeeCCEEEEeCCcc-cCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCC
Confidence 357999988432 36999999999999886 677999999998852 2223889999999999999876432 4
Q ss_pred CCCeeEEecccc---cccccceeeccEEEecccccccCC--CCCCeEEEeeeeeccCCcccC
Q 031164 79 GSKEVFLSDHHD---IQSADTIEGKCTVHSFKSYTKLDA--VGNDDFFCRFEYNSSSGAFNP 135 (164)
Q Consensus 79 ~~~ELf~s~~~d---~~~~~~I~~kc~V~~~~~~~~~~~--~~~~~ffcr~~yd~~~~~f~p 135 (164)
+++|||+++|.+ .+++++|+|+|.|+..+.++.++. ...++||.|..+|.+. |.|
T Consensus 100 ~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~e~t~FvklsWd~k~--f~p 159 (163)
T 4dov_A 100 PAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKSEETLFVKLSWNKKD--FAP 159 (163)
T ss_dssp CTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCCCSEEEEEEEECSSC--EEE
T ss_pred CCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCcccceEEEEEEEecCCc--cee
Confidence 688999999984 899999999999999988877643 5689999999999887 876
No 5
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.89 E-value=1e-22 Score=182.36 Aligned_cols=128 Identities=23% Similarity=0.388 Sum_probs=108.5
Q ss_pred CCCceeeeeEEEcCcCcEEccCCEEEEecCC-----------------------------------------CCCCCeEE
Q 031164 5 KAPRRTLESYTVKSISKTIKPGDCVLMRPSE-----------------------------------------PSKPSYVA 43 (164)
Q Consensus 5 ~~~r~~y~~~~i~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~i~ 43 (164)
-+|+++|.++.++|. +|++||+|||.++. .+.+++||
T Consensus 319 ~~~~~~~~~~~~~g~--~y~vgD~Vyl~p~~~~f~~~~~~~~~~~~~~~vd~~~ype~yrk~~~~~kg~n~~~~~P~~Ig 396 (1002)
T 3swr_A 319 LDSRVLYYSATKNGI--LYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIG 396 (1002)
T ss_dssp CSSCEEESEEEETTE--EEETTCEEEECTTSCCCSSCCCCCCCCSCSCCCCTTTCTTSGGGHHHHHTCCCCCCCCCCEEE
T ss_pred cCCcEEEEEEEECCE--EEecCCEEEECCcccccccccccccccccccccccccchhhhhccchhccccccCCCCCceee
Confidence 468999999999987 99999999999932 23478899
Q ss_pred EEeEEeecCCCC------eEEEEEEEeecccccCCcccc--cCCCCeeEEecccccccccceeeccEEEecccccccCC-
Q 031164 44 KIERIESDARGA------NVKVHVRWYYRPEESIGGRRQ--FHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA- 114 (164)
Q Consensus 44 ~I~~i~~~~~g~------~~~v~v~Wfyrp~e~~~~~~~--~~~~~ELf~s~~~d~~~~~~I~~kc~V~~~~~~~~~~~- 114 (164)
+|++|+.+.++. ..+|+|+|||||+||..+... ..+.||||+|++.+.+|+++|.|||.|++.+++.+...
T Consensus 397 rI~~i~~~~~~~~~~~~~~~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~ 476 (1002)
T 3swr_A 397 RIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQV 476 (1002)
T ss_dssp EEEEEEECCCSSSSCCSSCCEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHH
T ss_pred EEeEEEecCCccccCCCccEEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchh
Confidence 999999765432 389999999999999865432 34789999999999999999999999999999876543
Q ss_pred ---CCCCeEEEeeeeeccCCccc
Q 031164 115 ---VGNDDFFCRFEYNSSSGAFN 134 (164)
Q Consensus 115 ---~~~~~ffcr~~yd~~~~~f~ 134 (164)
.+++.||++..||+.+++|.
T Consensus 477 ~~~~~p~~fyf~~~Yd~~~~~f~ 499 (1002)
T 3swr_A 477 YSMGGPNRFYFLEAYNAKSKSFE 499 (1002)
T ss_dssp HHHTSSSEEEEEEEEETTTTEEE
T ss_pred hccCCCCeEEEEEEEeCCCCeee
Confidence 45688888899999999998
No 6
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.87 E-value=3.4e-22 Score=176.38 Aligned_cols=125 Identities=20% Similarity=0.372 Sum_probs=106.5
Q ss_pred CCceeeeeEEEcCcCcEEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeecccccCCcc-------cccC
Q 031164 6 APRRTLESYTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGR-------RQFH 78 (164)
Q Consensus 6 ~~r~~y~~~~i~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~-------~~~~ 78 (164)
.+|.||.++.++|. +|++||+|||.+++. .+.+||+|.+|+++.+|. .+++|+|||||+||..+. ....
T Consensus 43 ~~~~~~~~~~~~~~--~~~~~d~~~v~~~~~-~~~~i~~i~~~~~~~~~~-~~~~~~~~~r~~d~~~~~~~~~~~~~~~~ 118 (784)
T 4ft4_B 43 KARCHYRSAKVDNV--VYCLGDDVYVKAGEN-EADYIGRITEFFEGTDQC-HYFTCRWFFRAEDTVINSLVSISVDGHKH 118 (784)
T ss_dssp CEEEECSEEEETTE--EEETTCEEEECCSTT-SCCEEEEEEEEEEETTSC-EEEEEEEEEEGGGSTTGGGGGCCBTTBCC
T ss_pred ccceeeeeeeECCE--EEeCCCeEEEeCCCC-CCCEEEEEEEEEEcCCCC-EEEEEEEeeChhhhccccccccccccccc
Confidence 46899999999987 999999999998663 788999999999999999 999999999999998653 1245
Q ss_pred CCCeeEEecccccccccceeeccEEEecccccccCC----CCCCeEEEeeeeeccCCccc
Q 031164 79 GSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLDA----VGNDDFFCRFEYNSSSGAFN 134 (164)
Q Consensus 79 ~~~ELf~s~~~d~~~~~~I~~kc~V~~~~~~~~~~~----~~~~~ffcr~~yd~~~~~f~ 134 (164)
+.||||+|++.+++++++|.+||+|++.....+... .....|||+..|.....+|.
T Consensus 119 d~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 178 (784)
T 4ft4_B 119 DPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAYSTFA 178 (784)
T ss_dssp CTTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHHHHCSEEESEEEETGGGEEE
T ss_pred ccceEEEeCcEEEechHHeeeeEEEEeeCccccchhhhhccCCcceEeccccCccccCcc
Confidence 789999999999999999999999998765433222 23456999999998888777
No 7
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.85 E-value=2.1e-21 Score=177.45 Aligned_cols=128 Identities=23% Similarity=0.393 Sum_probs=108.4
Q ss_pred CCCceeeeeEEEcCcCcEEccCCEEEEecCC-----------------------------------------CCCCCeEE
Q 031164 5 KAPRRTLESYTVKSISKTIKPGDCVLMRPSE-----------------------------------------PSKPSYVA 43 (164)
Q Consensus 5 ~~~r~~y~~~~i~g~~~~~~vGD~V~v~~~~-----------------------------------------~~~~~~i~ 43 (164)
.+|+.+|.+++++|. +|++||+|||.++. .+.+++||
T Consensus 631 ~~~~~~Y~~~~~~g~--~Y~vgD~Vyl~p~~f~~~~~~~~~~~~~~~~~~~~~~ype~yrk~~~~~kg~~~~~~~Py~Ig 708 (1330)
T 3av4_A 631 VDGRVYCSSITKNGV--VYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIKGSNLDAPEPYRIG 708 (1330)
T ss_dssp SSSSEEEEEEEETTE--EEETTCEEEECTTSCCCCCCC-------CCCCCCTTTCSSGGGGGC-------CCCCCCCEEE
T ss_pred ccCceeeeEEEECCE--EEecCCEEEECcccccccccccccccccccccccccccchhhhcccccccccccCCCCCceEE
Confidence 468999999999986 99999999998762 13567899
Q ss_pred EEeEEeecCCC-----CeEEEEEEEeecccccCCccc--ccCCCCeeEEecccccccccceeeccEEEecccccccC-C-
Q 031164 44 KIERIESDARG-----ANVKVHVRWYYRPEESIGGRR--QFHGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKLD-A- 114 (164)
Q Consensus 44 ~I~~i~~~~~g-----~~~~v~v~Wfyrp~e~~~~~~--~~~~~~ELf~s~~~d~~~~~~I~~kc~V~~~~~~~~~~-~- 114 (164)
+|.+||.+.++ .+.+|+|+|||||+||..+.. ...+.||||+|++.+.+|+++|.|||.|.+..++.... +
T Consensus 709 qI~eI~~~~~s~~~~~~~~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y 788 (1330)
T 3av4_A 709 RIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDY 788 (1330)
T ss_dssp EEEECCCCEETTEECSSCCEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHH
T ss_pred EEEEEEecCCccccCCCceEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEeccccccccccc
Confidence 99999987542 239999999999999987642 24689999999999999999999999999998886642 2
Q ss_pred --CCCCeEEEeeeeeccCCccc
Q 031164 115 --VGNDDFFCRFEYNSSSGAFN 134 (164)
Q Consensus 115 --~~~~~ffcr~~yd~~~~~f~ 134 (164)
.+++.|||+..||+.++.|.
T Consensus 789 ~~~g~d~Fy~~~~Yd~~~k~~~ 810 (1330)
T 3av4_A 789 SQGGPDRFYFLEAYNSKTKNFE 810 (1330)
T ss_dssp HHTSTTEEEESCEEETTTTEEE
T ss_pred ccCCCCeEEEEEEecccCCeec
Confidence 35789999999999999997
No 8
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=99.72 E-value=5.9e-17 Score=122.78 Aligned_cols=124 Identities=16% Similarity=0.193 Sum_probs=96.8
Q ss_pred EEEcCcCcEEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeecccccCC-------ccc--------cc-
Q 031164 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIG-------GRR--------QF- 77 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~-------~~~--------~~- 77 (164)
+.....+.++++||.|+|..++ .+.+.++.|.+|......+-+.+.|.||+|..|+.. .+. .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (232)
T 2fl7_A 44 LKRISDGLSFGKGESVIFNDNV-TETYSVYLIHEIRLNTLNNVVEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFY 122 (232)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEC-----CCEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 5555556799999999998865 367889999999876522238899999999999965 221 23
Q ss_pred -------CCCCeeEEecccccccccceeeccEEEeccccccc--CCCCCCeEEEeeeeeccCCcccCCCC
Q 031164 78 -------HGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL--DAVGNDDFFCRFEYNSSSGAFNPDRV 138 (164)
Q Consensus 78 -------~~~~ELf~s~~~d~~~~~~I~~kc~V~~~~~~~~~--~~~~~~~ffcr~~yd~~~~~f~p~~~ 138 (164)
...||||+|.+.+.+-+.+|+++|.|++.++|..+ +.....+||||+++|+....|.+..|
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~~d~~~~~tFf~R~~cd~~~~~f~~iD~ 192 (232)
T 2fl7_A 123 KDKFFNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSSIDKIEDRDFLVRYACEPTAEKFVPIDI 192 (232)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC-------CTTTEEEEEEECCTTSCSCEECCH
T ss_pred hhhhhcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhcccccCCceEEEEEEEcCCcCccccccH
Confidence 68999999999999999999999999999999976 33567999999999998888987544
No 9
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=99.71 E-value=7e-17 Score=122.78 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=103.2
Q ss_pred EEEcCcCcEEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeecccccCC-------ccc--------cc-
Q 031164 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIG-------GRR--------QF- 77 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~-------~~~--------~~- 77 (164)
+.....+..+++||.|+|..++ .+.+.++.|.+|......+-+.+.|.||+|..|+.. .+. .+
T Consensus 44 L~R~~Dg~~~~~GDsVlv~~~~-~~sysv~LI~eIrl~t~~n~vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~ 122 (238)
T 1m4z_A 44 LKRSSDGIKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYY 122 (238)
T ss_dssp EEETTTCCEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHH
T ss_pred EEEccCCcEEeCCCEEEEecCC-CCceEEEEEEEEEecCCCceEEEEEEEeecHHHcCchhhhhhcCchhcccccchhhh
Confidence 4555556799999999998865 367889999999877633348899999999999965 221 23
Q ss_pred -------CCCCeeEEecccccccccceeeccEEEeccccccc--CCCCCCeEEEeeeeeccCCcccCCCCc
Q 031164 78 -------HGSKEVFLSDHHDIQSADTIEGKCTVHSFKSYTKL--DAVGNDDFFCRFEYNSSSGAFNPDRVA 139 (164)
Q Consensus 78 -------~~~~ELf~s~~~d~~~~~~I~~kc~V~~~~~~~~~--~~~~~~~ffcr~~yd~~~~~f~p~~~~ 139 (164)
...||||+|.+.+.+-+.+|+++|.|++.++|..+ +.....+||||+++|+....|.+..|.
T Consensus 123 ~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~i~~d~~~~~tFf~R~~cd~~~~~f~~iD~~ 193 (238)
T 1m4z_A 123 NKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKGNVDPERDFTVRYICEPTGEKFVDINIE 193 (238)
T ss_dssp HHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEECHHHHHHHGGGCCTTTEEEEEEECCTTSCCCEECCHH
T ss_pred hhhhhcccccceEEEeccHHHHhHHhhhhheEeccHHHHhhhccccccCceEEEEEEEcCCcCccccccHH
Confidence 68999999999999999999999999999999876 446679999999999988889875543
No 10
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.24 E-value=2.9e-07 Score=58.79 Aligned_cols=35 Identities=43% Similarity=0.980 Sum_probs=32.3
Q ss_pred CCcccCCCCceEEeeCCCCCCCCceEeCCccCCCC
Q 031164 130 SGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 130 ~~~f~p~~~~~~C~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
.+.|.++.....|+|.+|.+++..||||+.|+.||
T Consensus 3 ~~~~~~~~~~~~C~C~~~~d~~~~MIqCd~C~~Wf 37 (79)
T 1wep_A 3 SGSSGMALVPVYCLCRQPYNVNHFMIECGLCQDWF 37 (79)
T ss_dssp SCCCCCCCCCCCSTTSCSCCSSSCEEEBTTTCCEE
T ss_pred CCccCccCCccEEEcCCccCCCCceEEcCCCCCcE
Confidence 56788888899999999999999999999999997
No 11
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.85 E-value=2.8e-06 Score=53.62 Aligned_cols=29 Identities=41% Similarity=1.238 Sum_probs=26.4
Q ss_pred CCCceEEeeCCCCCCCCceEeCCccCCCC
Q 031164 136 DRVAVYCKCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 136 ~~~~~~C~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
+.....|+|.+|.+++..||||+.|+.||
T Consensus 7 ~~~~~yCiC~~~~~~~~~MI~Cd~C~~Wf 35 (75)
T 3kqi_A 7 ATVPVYCVCRLPYDVTRFMIECDACKDWF 35 (75)
T ss_dssp CCCCEETTTTEECCTTSCEEECTTTCCEE
T ss_pred CCCeeEEECCCcCCCCCCEEEcCCCCCCE
Confidence 35678999999999999999999999997
No 12
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.74 E-value=9e-06 Score=49.57 Aligned_cols=26 Identities=27% Similarity=0.809 Sum_probs=23.9
Q ss_pred ceEE-eeCCCCCCCCceEeCCccCCCC
Q 031164 139 AVYC-KCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 139 ~~~C-~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
...| +|.+|++++..+|||+.|+.||
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~Wf 32 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWF 32 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEE
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCC
Confidence 4679 9999999999999999999997
No 13
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.68 E-value=9e-06 Score=49.87 Aligned_cols=22 Identities=32% Similarity=0.759 Sum_probs=21.1
Q ss_pred eeCCCCCCCCceEeCC-ccCCCC
Q 031164 143 KCEMPYNPDDLMVQCE-GCSDWS 164 (164)
Q Consensus 143 ~c~~~~~pD~~~~~C~-~C~~~~ 164 (164)
+|.+|++||..+|+|| .|++||
T Consensus 13 ~C~~p~~~~~~mI~CD~~C~~Wf 35 (65)
T 2vpb_A 13 ICTNEVNDDQDAILCEASCQKWF 35 (65)
T ss_dssp TTCSBCCTTSCEEEBTTTTCCEE
T ss_pred cCCCccCCCCCeEecccCccccC
Confidence 6999999999999999 999997
No 14
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.66 E-value=1.1e-05 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.840 Sum_probs=21.7
Q ss_pred EEeeCCCCCCCCceEeCC-ccCCCC
Q 031164 141 YCKCEMPYNPDDLMVQCE-GCSDWS 164 (164)
Q Consensus 141 ~C~c~~~~~pD~~~~~C~-~C~~~~ 164 (164)
-|+|.+|++++..+|+|+ .|+.||
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~Wf 29 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWF 29 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEE
T ss_pred CCCCcCccCCCCcEEEeCCCCCccC
Confidence 367999999999999999 899997
No 15
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.49 E-value=2.8e-05 Score=48.55 Aligned_cols=29 Identities=34% Similarity=0.871 Sum_probs=25.6
Q ss_pred CCCceEEeeCCCCCCCCceEeCCccCCCC
Q 031164 136 DRVAVYCKCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 136 ~~~~~~C~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
+.+...|+|.++.+....+|||+.|+.||
T Consensus 13 ~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~ 41 (72)
T 1wee_A 13 DNWKVDCKCGTKDDDGERMLACDGCGVWH 41 (72)
T ss_dssp CSSEECCTTCCCSCCSSCEEECSSSCEEE
T ss_pred CCcceEeeCCCccCCCCcEEECCCCCCcc
Confidence 46788999999987777899999999996
No 16
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.38 E-value=3.1e-05 Score=45.26 Aligned_cols=24 Identities=33% Similarity=1.000 Sum_probs=21.6
Q ss_pred eEEeeCCCCCCCCceEeCCccCCCC
Q 031164 140 VYCKCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 140 ~~C~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
..|+|.++.+ +..||||+.|+.||
T Consensus 5 ~~C~C~~~~~-~~~MI~Cd~C~~W~ 28 (52)
T 3o7a_A 5 VTCFCMKPFA-GRPMIECNECHTWI 28 (52)
T ss_dssp BCSTTCCBCT-TCCEEECTTTCCEE
T ss_pred eEEEeCCcCC-CCCEEEcCCCCccc
Confidence 5799999887 77899999999996
No 17
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.27 E-value=6.4e-05 Score=47.35 Aligned_cols=27 Identities=37% Similarity=1.064 Sum_probs=23.1
Q ss_pred CCceEEeeCCCCCCCCceEeCCccCCCC
Q 031164 137 RVAVYCKCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 137 ~~~~~C~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
.....|+|.++.+ +..||||+.|+.||
T Consensus 14 ~~~~~C~C~~~~~-~~~MI~Cd~C~~Wf 40 (76)
T 1wem_A 14 PNALYCICRQPHN-NRFMICCDRCEEWF 40 (76)
T ss_dssp TTCCCSTTCCCCC-SSCEEECSSSCCEE
T ss_pred CCCCEEECCCccC-CCCEEEeCCCCCcE
Confidence 3457999999987 55799999999997
No 18
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.26 E-value=5.5e-05 Score=46.71 Aligned_cols=27 Identities=30% Similarity=0.853 Sum_probs=23.1
Q ss_pred CCceEEeeCCCCCCCCceEeCCccCCCC
Q 031164 137 RVAVYCKCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 137 ~~~~~C~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
.....|+|.++.+ +..+|||+.|+.||
T Consensus 17 ~~~~~CiC~~~~~-~~~MIqCd~C~~Wf 43 (68)
T 3o70_A 17 QGLVTCFCMKPFA-GRPMIECNECHTWI 43 (68)
T ss_dssp TTCCCSTTCCCCT-TCCEEECTTTCCEE
T ss_pred CCceEeECCCcCC-CCCEEECCCCCccc
Confidence 3457999999887 66799999999997
No 19
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.84 E-value=0.00023 Score=59.69 Aligned_cols=31 Identities=39% Similarity=1.092 Sum_probs=27.3
Q ss_pred cCCCCceEEeeCCCCCCCCceEeCCccCCCC
Q 031164 134 NPDRVAVYCKCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 134 ~p~~~~~~C~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
.+......|+|.+|.+++..|||||.|+.||
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd~C~~Wf 62 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECDICKDWF 62 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBTTTCCEE
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEccCCCCce
Confidence 3445668999999999999999999999997
No 20
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.61 E-value=0.00067 Score=42.83 Aligned_cols=27 Identities=37% Similarity=0.858 Sum_probs=23.5
Q ss_pred CCceEEeeCCCCCCCCceEeCC--ccCCCC
Q 031164 137 RVAVYCKCEMPYNPDDLMVQCE--GCSDWS 164 (164)
Q Consensus 137 ~~~~~C~c~~~~~pD~~~~~C~--~C~~~~ 164 (164)
.+...|+|.++ .++..||||+ .|+.||
T Consensus 14 ~~~~~CiC~~~-~~~g~MI~CD~~~C~~W~ 42 (78)
T 1wew_A 14 EIKVRCVCGNS-LETDSMIQCEDPRCHVWQ 42 (78)
T ss_dssp CCCCCCSSCCC-CCCSCEEECSSTTTCCEE
T ss_pred CCCEEeECCCc-CCCCCEEEECCccCCccc
Confidence 46789999999 4677999999 999996
No 21
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=95.79 E-value=0.0023 Score=39.88 Aligned_cols=25 Identities=32% Similarity=0.963 Sum_probs=20.3
Q ss_pred ceEE-eeCCCCCCCCceEeCCccCCCC
Q 031164 139 AVYC-KCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 139 ~~~C-~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
...| +|.++.+ +..+|+||.|..||
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wf 43 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWY 43 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEE
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCccc
Confidence 3568 7998876 34699999999997
No 22
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=95.47 E-value=0.0034 Score=41.29 Aligned_cols=24 Identities=29% Similarity=0.870 Sum_probs=20.3
Q ss_pred eEEeeCCCCCCCCceEeCCccCCCC
Q 031164 140 VYCKCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 140 ~~C~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
.-|+|..+.+. ..+|+|+.|..||
T Consensus 29 vrCiC~~~~~~-~~mi~Cd~C~~w~ 52 (98)
T 2lv9_A 29 TRCICGFTHDD-GYMICCDKCSVWQ 52 (98)
T ss_dssp CCCTTSCCSCS-SCEEEBTTTCBEE
T ss_pred EEeECCCccCC-CcEEEcCCCCCcC
Confidence 57999988764 4699999999997
No 23
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=94.98 E-value=0.0078 Score=36.79 Aligned_cols=27 Identities=37% Similarity=0.893 Sum_probs=21.1
Q ss_pred CCceEEeeCCCCCCCCceEeCCc--cCCCC
Q 031164 137 RVAVYCKCEMPYNPDDLMVQCEG--CSDWS 164 (164)
Q Consensus 137 ~~~~~C~c~~~~~pD~~~~~C~~--C~~~~ 164 (164)
.....|+|.++.+ +..||+|++ |+.||
T Consensus 8 e~~v~C~C~~~~~-~g~mI~CD~~~C~~W~ 36 (68)
T 2rsd_A 8 EAKVRCICSSTMV-NDSMIQCEDQRCQVWQ 36 (68)
T ss_dssp SCEECCTTCCCSC-CSCEEECSCTTTCEEE
T ss_pred CCCEEeECCCCcC-CCCEEEECCCCCCCeE
Confidence 3457899988755 457999995 99996
No 24
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.11 E-value=0.015 Score=35.77 Aligned_cols=25 Identities=28% Similarity=0.682 Sum_probs=20.0
Q ss_pred CceEEeeCCCCCCCCceEeCCccC---CCC
Q 031164 138 VAVYCKCEMPYNPDDLMVQCEGCS---DWS 164 (164)
Q Consensus 138 ~~~~C~c~~~~~pD~~~~~C~~C~---~~~ 164 (164)
....|+|.++.+ ..||+||.|. .||
T Consensus 5 ~~~yC~C~~~~~--g~MI~CD~cdC~~~Wf 32 (70)
T 1x4i_A 5 SSGYCICNQVSY--GEMVGCDNQDCPIEWF 32 (70)
T ss_dssp CCCCSTTSCCCC--SSEECCSCTTCSCCCE
T ss_pred CCeEEEcCCCCC--CCEeEeCCCCCCccCC
Confidence 457899999854 4799999974 886
No 25
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=94.00 E-value=0.016 Score=35.74 Aligned_cols=26 Identities=31% Similarity=0.869 Sum_probs=21.2
Q ss_pred CCceEEeeCCCCCCCCceEeCCc--cC-CCC
Q 031164 137 RVAVYCKCEMPYNPDDLMVQCEG--CS-DWS 164 (164)
Q Consensus 137 ~~~~~C~c~~~~~pD~~~~~C~~--C~-~~~ 164 (164)
.....|+|.++.+ ..||+||. |. .||
T Consensus 14 ~~~~~C~C~~~~~--g~MI~CD~~~C~~~wf 42 (71)
T 1wen_A 14 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWF 42 (71)
T ss_dssp TSCCCSTTCCCSC--SSEECCSCSSCSCCCE
T ss_pred CCCCEEECCCCCC--CCEeEeeCCCCCCccE
Confidence 3457999999875 57999999 77 797
No 26
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=94.00 E-value=0.0087 Score=35.58 Aligned_cols=26 Identities=27% Similarity=0.846 Sum_probs=20.7
Q ss_pred CCceEEeeCCCCCCCCceEeCCc--cC-CCC
Q 031164 137 RVAVYCKCEMPYNPDDLMVQCEG--CS-DWS 164 (164)
Q Consensus 137 ~~~~~C~c~~~~~pD~~~~~C~~--C~-~~~ 164 (164)
.....|+|.++.+ ..||+||. |. .||
T Consensus 7 ~e~~yC~C~~~~~--g~mi~CD~~~C~~~wf 35 (59)
T 3c6w_A 7 NEPTYCLCHQVSY--GEMIGCDNPDCPIEWF 35 (59)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEE
T ss_pred CCCcEEECCCCCC--CCeeEeeCCCCCCCCE
Confidence 3567999999875 46999999 77 786
No 27
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.87 E-value=0.013 Score=37.93 Aligned_cols=26 Identities=31% Similarity=0.869 Sum_probs=21.3
Q ss_pred CCceEEeeCCCCCCCCceEeCCc--cC-CCC
Q 031164 137 RVAVYCKCEMPYNPDDLMVQCEG--CS-DWS 164 (164)
Q Consensus 137 ~~~~~C~c~~~~~pD~~~~~C~~--C~-~~~ 164 (164)
.....|+|.++.+ ..||+||. |. .||
T Consensus 34 ~e~~yCiC~~~~~--g~MI~CD~~dC~~~Wf 62 (91)
T 1weu_A 34 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWF 62 (91)
T ss_dssp CCCBCSTTCCBCC--SCCCCCSCSSCSCCCC
T ss_pred CCCcEEECCCCCC--CCEeEecCCCCCCCCE
Confidence 3557999999886 46999999 76 897
No 28
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=93.63 E-value=0.011 Score=35.52 Aligned_cols=26 Identities=27% Similarity=0.852 Sum_probs=20.4
Q ss_pred CCceEEeeCCCCCCCCceEeCCc--cC-CCC
Q 031164 137 RVAVYCKCEMPYNPDDLMVQCEG--CS-DWS 164 (164)
Q Consensus 137 ~~~~~C~c~~~~~pD~~~~~C~~--C~-~~~ 164 (164)
.....|+|.++.+ ..||+||. |. .||
T Consensus 9 ~e~~yC~C~~~~~--g~MI~CD~c~C~~~Wf 37 (62)
T 2g6q_A 9 NEPTYCLCNQVSY--GEMIGCDNEQCPIEWF 37 (62)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEE
T ss_pred CCCcEEECCCCCC--CCeeeeeCCCCCcccE
Confidence 3458999999876 36999999 55 886
No 29
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=93.34 E-value=0.022 Score=36.81 Aligned_cols=26 Identities=31% Similarity=0.691 Sum_probs=21.2
Q ss_pred CCceEEeeCCCCCCCCceEeCCccC---CCC
Q 031164 137 RVAVYCKCEMPYNPDDLMVQCEGCS---DWS 164 (164)
Q Consensus 137 ~~~~~C~c~~~~~pD~~~~~C~~C~---~~~ 164 (164)
.....|+|.++.+- .||+||.|+ .||
T Consensus 24 ~~~~yCiC~~~~~g--~MI~CD~c~C~~eWf 52 (90)
T 2jmi_A 24 QEEVYCFCRNVSYG--PMVACDNPACPFEWF 52 (90)
T ss_dssp CCSCCSTTTCCCSS--SEECCCSSSCSCSCE
T ss_pred CCCcEEEeCCCCCC--CEEEecCCCCccccC
Confidence 45679999998763 599999977 897
No 30
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=93.32 E-value=0.013 Score=34.84 Aligned_cols=26 Identities=31% Similarity=0.869 Sum_probs=20.5
Q ss_pred CCceEEeeCCCCCCCCceEeCCc--cC-CCC
Q 031164 137 RVAVYCKCEMPYNPDDLMVQCEG--CS-DWS 164 (164)
Q Consensus 137 ~~~~~C~c~~~~~pD~~~~~C~~--C~-~~~ 164 (164)
.....|+|.++.+ ..+|+||. |. .||
T Consensus 8 ~e~~~C~C~~~~~--g~mi~CD~cdC~~~wf 36 (60)
T 2vnf_A 8 NEPTYCLCHQVSY--GEMIGCDNPDCSIEWF 36 (60)
T ss_dssp -CCEETTTTEECC--SEEEECSCTTCSSCEE
T ss_pred CCCCEEECCCcCC--CCEEEeCCCCCCCceE
Confidence 3467999999875 57999999 66 786
No 31
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=92.78 E-value=0.047 Score=35.90 Aligned_cols=19 Identities=32% Similarity=0.936 Sum_probs=16.5
Q ss_pred CCCCCCCCceEeCCccCCC
Q 031164 145 EMPYNPDDLMVQCEGCSDW 163 (164)
Q Consensus 145 ~~~~~pD~~~~~C~~C~~~ 163 (164)
..+..|+...+||+.|.||
T Consensus 19 ~~~~~~~~~WVQCD~C~KW 37 (100)
T 2l7p_A 19 EDSYSTESAWVRCDDCFKW 37 (100)
T ss_dssp SSCCSSSSEEEECTTTCCE
T ss_pred CCCCCCCCeEEeeCCCCcc
Confidence 4566788999999999999
No 32
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=92.01 E-value=0.049 Score=45.89 Aligned_cols=20 Identities=20% Similarity=0.569 Sum_probs=17.4
Q ss_pred CCCCCCCCceEeCCccCCCC
Q 031164 145 EMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 145 ~~~~~pD~~~~~C~~C~~~~ 164 (164)
..+.|||..||+||.|+.||
T Consensus 49 ~~~~n~~~~mI~CD~C~~Wf 68 (528)
T 3pur_A 49 HHHKKNDFQWIGCDSCQTWY 68 (528)
T ss_dssp TTTTTSTTSEEECTTTCCEE
T ss_pred ccCCCcCCCEEECCCCCcCC
Confidence 44567999999999999997
No 33
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.24 E-value=0.14 Score=28.97 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=16.0
Q ss_pred eeCCCCCCCCceEeCCccCCCC
Q 031164 143 KCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 143 ~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
+|.++.+++ .++.||.|.+||
T Consensus 5 vC~~~~~~~-~ll~Cd~C~~~~ 25 (51)
T 1f62_A 5 VCRKKGEDD-KLILCDECNKAF 25 (51)
T ss_dssp TTCCSSCCS-CCEECTTTCCEE
T ss_pred CCCCCCCCC-CEEECCCCChhh
Confidence 366666554 599999999986
No 34
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=84.68 E-value=0.54 Score=28.64 Aligned_cols=17 Identities=29% Similarity=0.825 Sum_probs=14.4
Q ss_pred CCCCCCceEeCC--ccCCC
Q 031164 147 PYNPDDLMVQCE--GCSDW 163 (164)
Q Consensus 147 ~~~pD~~~~~C~--~C~~~ 163 (164)
+..+....|||+ .|.||
T Consensus 11 ~~~~~~~WVQCd~p~C~KW 29 (69)
T 2e61_A 11 GFGQCLVWVQCSFPNCGKW 29 (69)
T ss_dssp SCCCCCCEEECSSTTTCCE
T ss_pred CCCCCCeEEEeCccccCcc
Confidence 445778899999 99998
No 35
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=82.17 E-value=1.7 Score=27.30 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=33.8
Q ss_pred ccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEee
Q 031164 24 KPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYY 65 (164)
Q Consensus 24 ~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfy 65 (164)
.+||.+.|.....+.+...|.|.++... +|. +-..|+|+-
T Consensus 7 ~vGDrlvv~g~~vg~~~R~GeIvEV~g~-dG~-PPY~VRw~d 46 (83)
T 2a7y_A 7 KVGDYLVVKGTTTERHDQHAEIIEVRSA-DGS-PPYVVRWLV 46 (83)
T ss_dssp CTTEEEEESCTTTSCCEEEEEEEECSCS-SSC-SCEEEEETT
T ss_pred cCCCEEEEecCcCCCCCcEEEEEEEECC-CCC-CCEEEEecC
Confidence 6899999999877789999999999876 466 778899953
No 36
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=78.13 E-value=0.96 Score=27.58 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=18.4
Q ss_pred eEE-eeCCCC-CCCCceEeCCccCCCC
Q 031164 140 VYC-KCEMPY-NPDDLMVQCEGCSDWS 164 (164)
Q Consensus 140 ~~C-~c~~~~-~pD~~~~~C~~C~~~~ 164 (164)
..| +|.+.. ..+..++.||+|..||
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~ 43 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAV 43 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEE
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCcc
Confidence 456 587775 3445799999999886
No 37
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=76.83 E-value=3.5 Score=24.05 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.5
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
.++.|+.|++.-.+ ..+|.|.|+++...
T Consensus 3 ~f~~GedVLarwsD--G~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 3 RLWEGQDVLARWTD--GLLYLGTIKKVDSA 30 (58)
T ss_dssp SCCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred ccccCCEEEEEecC--CCEEeEEEEEEecC
Confidence 56899999999777 68999999999875
No 38
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=73.66 E-value=3.4 Score=25.49 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.3
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
..|..||.|++.-.| ..+|.|.|.++...
T Consensus 25 ~~f~eGeDVLarwsD--GlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 25 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 53 (79)
T ss_dssp CCCCTTCEEEBCCTT--SCCCEEEEEEEETT
T ss_pred ceeccCCEEEEEecC--CCEEeEEEEEeccC
Confidence 478999999998777 68999999999875
No 39
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=73.00 E-value=2.4 Score=28.92 Aligned_cols=44 Identities=25% Similarity=0.455 Sum_probs=32.4
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeecC-----CCCeEEEEEEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA-----RGANVKVHVRWYYR 66 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~-----~g~~~~v~v~Wfyr 66 (164)
..+.+||.|...-.+ -+.|-|+|...-... .|....+.|+||-.
T Consensus 21 ~~~~~GdlVwaK~~g--~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~ 69 (134)
T 2gfu_A 21 SDFSPGDLVWAKMEG--YPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDD 69 (134)
T ss_dssp CCCCTTSEEEECCTT--SCCEEEECCCCSSTTCCEEESSSCEEEEEEECSS
T ss_pred CCCCCCCEEEEeecC--CCCCCeeecchhhhhhhhhccCCCceEEEEECCC
Confidence 389999999999887 589999998864321 12225688888754
No 40
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=72.39 E-value=1.5 Score=25.92 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=18.1
Q ss_pred eEE-eeCCCCC-CCCceEeCCccCCCC
Q 031164 140 VYC-KCEMPYN-PDDLMVQCEGCSDWS 164 (164)
Q Consensus 140 ~~C-~c~~~~~-pD~~~~~C~~C~~~~ 164 (164)
..| +|..... .+..+++|+.|..+|
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~ 33 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGY 33 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEE
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHH
Confidence 355 5777643 445899999999876
No 41
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.61 E-value=0.7 Score=29.64 Aligned_cols=24 Identities=29% Similarity=0.700 Sum_probs=18.2
Q ss_pred eEE-eeCCCCCCCCceEeCCccCCCC
Q 031164 140 VYC-KCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 140 ~~C-~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
..| +|.+..+++ .++.||.|..||
T Consensus 17 ~~C~vC~~~~~~~-~ll~CD~C~~~~ 41 (92)
T 2e6r_A 17 YICQVCSRGDEDD-KLLFCDGCDDNY 41 (92)
T ss_dssp CCCSSSCCSGGGG-GCEECTTTCCEE
T ss_pred CCCccCCCcCCCC-CEEEcCCCCchh
Confidence 356 588776544 599999999886
No 42
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=69.86 E-value=1.5 Score=27.87 Aligned_cols=25 Identities=16% Similarity=0.416 Sum_probs=18.6
Q ss_pred eEE-eeCCCC-CCCCceEeCCccCCCC
Q 031164 140 VYC-KCEMPY-NPDDLMVQCEGCSDWS 164 (164)
Q Consensus 140 ~~C-~c~~~~-~pD~~~~~C~~C~~~~ 164 (164)
..| +|.... ..+..++.||.|..||
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~C~~~f 52 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDMCNLAV 52 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSSSCCCC
T ss_pred CcCCcCCCCCCCCCCCEEECCCCCchh
Confidence 456 688775 3344799999999987
No 43
>3zzs_A Transcription attenuation protein MTRB; transcription regulation, protein engineering; HET: TRP; 1.49A {Geobacillus stearothermophilus} SCOP: b.82.5.1 PDB: 3zzq_A* 3zzl_A*
Probab=69.72 E-value=7.2 Score=22.95 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=36.3
Q ss_pred EEEEEeecccccCCcccccCCCCeeEEecccccccccceeeccEEEec
Q 031164 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSF 106 (164)
Q Consensus 59 v~v~Wfyrp~e~~~~~~~~~~~~ELf~s~~~d~~~~~~I~~kc~V~~~ 106 (164)
|.|.=+-|..|+.-.-..-.+..|+.+....+..++-.|+|++.+++.
T Consensus 13 V~VigltRg~dtkfhhtEkLdkGEVmiaQftehtsaiKiRGkA~i~t~ 60 (65)
T 3zzs_A 13 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 60 (65)
T ss_dssp EEEEC-CCSSSCCCCCEEEECTTCEEEEECCSSCSEEEEESSEEEEET
T ss_pred eEEEEeeccCCccchhhhccCCCcEEEEEeecceeEEEEeceEEEEee
Confidence 455556677777543322367899999999999999999999999874
No 44
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=69.32 E-value=4.1 Score=28.64 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=32.8
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeecCC---CCeEEEEEEEeecc
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDAR---GANVKVHVRWYYRP 67 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~---g~~~~v~v~Wfyrp 67 (164)
..+++||.|...-.. -+.|-|+|........ .. -.+.|+||=..
T Consensus 15 ~~f~~GDLVWaKvkG--~PwWPa~V~~~~~~~k~~~~~-~~~~V~FFG~~ 61 (154)
T 3llr_A 15 RGFGIGELVWGKLRG--FSWWPGRIVSWWMTGRSRAAE-GTRWVMWFGDG 61 (154)
T ss_dssp CCCCTTCEEEECCTT--SCCEEEEEECGGGTTSCCCCT-TEEEEEETTTC
T ss_pred CCCccCCEEEEecCC--CCCCCEEEecccccccccCCC-CEEEEEEeCCC
Confidence 389999999999877 6999999998764321 12 45778887544
No 45
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=69.31 E-value=4 Score=22.18 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=14.5
Q ss_pred CCCCCCCceEeCCccCC
Q 031164 146 MPYNPDDLMVQCEGCSD 162 (164)
Q Consensus 146 ~~~~pD~~~~~C~~C~~ 162 (164)
.|..++..|.-|.+|++
T Consensus 9 ~ple~~~~YRvC~~Cgk 25 (44)
T 2lo3_A 9 DPLDKPIQYRVCEKCGK 25 (44)
T ss_dssp CCCCCCCCEEECTTTCC
T ss_pred cccCccccchhhcccCC
Confidence 46678889999999987
No 46
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=68.88 E-value=6.2 Score=23.63 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=24.2
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
.+++||.|+..=.+ ...|.|.|.+|...
T Consensus 13 ~f~vGddVLA~wtD--Gl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 13 KFEEGQDVLARWSD--GLFYLGTIKKINIL 40 (66)
T ss_dssp CSCTTCEEEEECTT--SCEEEEEEEEEETT
T ss_pred cccCCCEEEEEEcc--CcEEEeEEEEEccC
Confidence 68999999988544 58999999999975
No 47
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=67.41 E-value=11 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=23.7
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeecC
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 52 (164)
.|.+|+.|++..+ ...+-|+|+++....
T Consensus 23 ~~~vG~kv~v~~~---~~~y~AkIl~ir~~~ 50 (92)
T 2ro0_A 23 DIIIKCQCWVQKN---DEERLAEILSINTRK 50 (92)
T ss_dssp SCCTTCEEEEEET---TEEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 6899999999963 478999999999764
No 48
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=66.71 E-value=7.2 Score=23.49 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=21.7
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEe
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIE 49 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~ 49 (164)
.|.+||.|++.-.| ..+|.|.|++..
T Consensus 15 ~~~~geDVL~rw~D--G~fYLGtIVd~~ 40 (69)
T 2xk0_A 15 TYALQEDVFIKCND--GRFYLGTIIDQT 40 (69)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEC
T ss_pred ccccCCeEEEEecC--CCEEEEEEEecC
Confidence 78999999999666 699999996543
No 49
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=65.50 E-value=2.3 Score=25.28 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=15.3
Q ss_pred ceEE-eeCCCCCCCCceEeCCccCCCC
Q 031164 139 AVYC-KCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 139 ~~~C-~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
...| +|... ..++.||.|..||
T Consensus 8 ~~~C~vC~~~----g~ll~CD~C~~~f 30 (66)
T 1xwh_A 8 EDECAVCRDG----GELICCDGCPRAF 30 (66)
T ss_dssp CCSBSSSSCC----SSCEECSSCCCEE
T ss_pred CCCCccCCCC----CCEEEcCCCChhh
Confidence 3456 47654 3589999998876
No 50
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=64.96 E-value=1.6 Score=27.08 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=14.4
Q ss_pred eCCCCCCCCceEeCCccCCCC
Q 031164 144 CEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 144 c~~~~~pD~~~~~C~~C~~~~ 164 (164)
|.+..+++ .+++|+.|.++|
T Consensus 32 C~~~~d~~-~ll~CD~C~~~y 51 (77)
T 3shb_A 32 CGGRQDPD-KQLMCDECDMAF 51 (77)
T ss_dssp TCCCSCGG-GEEECTTTCCEE
T ss_pred cCCCCCCc-ceeEeCCCCCcc
Confidence 45555444 599999999875
No 51
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=64.25 E-value=4.9 Score=25.63 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=29.2
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeecC--CCCeEEEEEEEe
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA--RGANVKVHVRWY 64 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~--~g~~~~v~v~Wf 64 (164)
..+++||.|...-.+ -+.|-|+|.++-... ... ..+.|+||
T Consensus 4 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~~~~k~~~-~~~~V~FF 46 (94)
T 3qby_A 4 HAFKPGDLVFAKMKG--YPHWPARIDDIADGAVKPPP-NKYPIFFF 46 (94)
T ss_dssp CCCCTTCEEEECCTT--SCCEEEEECCCCTTSBCCCT-TCEEEEET
T ss_pred CcCccCCEEEEecCC--CCCCCEEEeecccccccCCC-CEEEEEEE
Confidence 368999999999877 589999998864221 111 34667776
No 52
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=64.01 E-value=3.2 Score=27.37 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=30.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeecC--CCCeEEEEEEEee
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA--RGANVKVHVRWYY 65 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~--~g~~~~v~v~Wfy 65 (164)
..+++||.|...-.+ -+.|-|+|.++-+.. ... ..+.|+||-
T Consensus 18 ~~~~~GdlVwaK~kG--yP~WPa~V~~~p~~~~k~~~-~~~~V~FFG 61 (110)
T 1ri0_A 18 KEYKCGDLVFAKMKG--YPHWPARIDEMPEAAVKSTA-NKYQVFFFG 61 (110)
T ss_dssp SSCCTTCEEEEEETT--EEEEEEEEECCCSSSSCCCS-SCEEEEETT
T ss_pred CCCCCCCEEEEEeCC--CCCCCEEEecccHhhcCCCC-CEEEEEEec
Confidence 488999999999877 589999998754321 112 457777773
No 53
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=62.98 E-value=8.7 Score=22.90 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=24.2
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEee
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (164)
..|++||.|+-.=.++ ..+|-++|.+|..
T Consensus 8 ~~~~vgd~VmaRW~Gd-~~yYparI~Si~s 36 (66)
T 2l8d_A 8 RKYADGEVVMGRWPGS-VLYYEVQVTSYDD 36 (66)
T ss_dssp SSSCSSCEEEEECTTS-SCEEEEEEEEEET
T ss_pred eEeecCCEEEEEcCCC-ccceEEEEEEecc
Confidence 3789999999986443 7899999999993
No 54
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.64 E-value=3.4 Score=26.06 Aligned_cols=25 Identities=20% Similarity=0.614 Sum_probs=18.5
Q ss_pred eEE-eeCCCCCC-CCceEeCCccCCCC
Q 031164 140 VYC-KCEMPYNP-DDLMVQCEGCSDWS 164 (164)
Q Consensus 140 ~~C-~c~~~~~p-D~~~~~C~~C~~~~ 164 (164)
..| +|.....+ +..+++|+.|...|
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~y 43 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLY 43 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEE
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeE
Confidence 456 48877654 46899999998765
No 55
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.23 E-value=3.3 Score=25.51 Aligned_cols=20 Identities=20% Similarity=0.575 Sum_probs=14.5
Q ss_pred eCCCCCCCCceEeCCccCCCC
Q 031164 144 CEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 144 c~~~~~pD~~~~~C~~C~~~~ 164 (164)
|.+..+++ .++.||.|..+|
T Consensus 32 C~~~~~~~-~ll~CD~C~~~y 51 (77)
T 2e6s_A 32 CGGKHEPN-MQLLCDECNVAY 51 (77)
T ss_dssp SCCCCCST-TEEECSSSCCEE
T ss_pred cCCcCCCC-CEEEcCCCCccc
Confidence 55554444 599999998875
No 56
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=60.91 E-value=5.4 Score=27.74 Aligned_cols=43 Identities=19% Similarity=0.441 Sum_probs=29.1
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeecCCC-CeEEEEEEEee
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARG-ANVKVHVRWYY 65 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g-~~~~v~v~Wfy 65 (164)
..|++||.|...-.+ -+.|-|+|.+.-..... ....+.|+||-
T Consensus 21 ~~f~~GdlVwaK~~g--~p~WPa~V~~~~~~~~~~~~~~~~V~FfG 64 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG--YPHWPARVDEVPDGAVKPPTNKLPIFFFG 64 (153)
T ss_dssp GGCCTTCEEEECCTT--SCCEEEEECCCC---CCCCTTCEEEEETT
T ss_pred cCCCCCCEEEEeCCC--CCCCCEEEeEchhhccCCCCCEEEEEecC
Confidence 478999999999877 58999999876443110 01346677764
No 57
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.66 E-value=24 Score=21.05 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=24.9
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
-.+.+|+.|+..=.| ..+|.|.|.++...
T Consensus 8 ~~f~eGqdVLarWsD--GlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 8 PRLWEGQDVLARWTD--GLLYLGTIKKVDSA 36 (68)
T ss_dssp CCCCTTCEEEEECTT--SSEEEEEEEEEETT
T ss_pred cccccCCEEEEEecC--CcEEEeEEEEEecC
Confidence 478999999998666 68999999999865
No 58
>3zte_A Tryptophan operon RNA-binding attenuation protein; RNA-binding protein, transcription factors, trinucleotide RE; HET: TRP; 2.41A {Bacillus licheniformis} SCOP: b.82.5.1
Probab=60.65 E-value=11 Score=23.04 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=35.6
Q ss_pred EEEEEeecccccCCcccccCCCCeeEEecccccccccceeeccEEEecc
Q 031164 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSFK 107 (164)
Q Consensus 59 v~v~Wfyrp~e~~~~~~~~~~~~ELf~s~~~d~~~~~~I~~kc~V~~~~ 107 (164)
|.|.=+-|..|+...-..-.+..|+.+....+..++-.|+|++.|++..
T Consensus 21 V~VIGltRG~dtkfhHtEkLdkGEVmIaQFTehtsaiKiRGkA~I~t~~ 69 (78)
T 3zte_A 21 VNVIGLTRGTDTRFHHSEKLDKGEVMICQFTEHTSAIKVRGEALIQTAN 69 (78)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEETT
T ss_pred eEEEEeeccCCcccceehccCCCcEEEEEeecceeEEEEeeeEEEEecc
Confidence 4444455666664322222578999999999999999999999998743
No 59
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=60.10 E-value=2.2 Score=25.82 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=14.0
Q ss_pred eCCCCCCCCceEeCCccCCCC
Q 031164 144 CEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 144 c~~~~~pD~~~~~C~~C~~~~ 164 (164)
|.+..+++ .++.||.|.++|
T Consensus 24 C~~~~~~~-~ll~CD~C~~~y 43 (70)
T 3asl_A 24 CGGRQDPD-KQLMCDECDMAF 43 (70)
T ss_dssp TCCCSCGG-GEEECTTTCCEE
T ss_pred CCCcCCCC-CEEEcCCCCCce
Confidence 44444433 699999999876
No 60
>1gtf_A Trp RNA-binding attenuation protein (trap); RNA binding protein-RNA complex, transcription attenuation, RNA-binding protein, Trp RNA; HET: TRP; 1.75A {Bacillus stearothermophilus} SCOP: b.82.5.1 PDB: 1c9s_A* 1gtn_A* 1qaw_A* 1utd_A* 1utf_A* 1utv_A* 2zp8_A* 3aqd_A 2zcz_A* 2zp9_A* 2zd0_A* 2ext_A* 2exs_A* 1wap_A*
Probab=59.71 E-value=12 Score=22.49 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=35.7
Q ss_pred EEEEEeecccccCCcccccCCCCeeEEecccccccccceeeccEEEec
Q 031164 59 VHVRWYYRPEESIGGRRQFHGSKEVFLSDHHDIQSADTIEGKCTVHSF 106 (164)
Q Consensus 59 v~v~Wfyrp~e~~~~~~~~~~~~ELf~s~~~d~~~~~~I~~kc~V~~~ 106 (164)
|.|.=+-|..||.---..-.+..|+.+.-..+..++-.|+|++.|+..
T Consensus 17 V~viGLTRG~dTkFhHtEKLDkGEVmiaQFTehTSAiKiRGka~i~t~ 64 (74)
T 1gtf_A 17 VNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTR 64 (74)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTCEEEEECCSSEEEEEEESSEEEEET
T ss_pred eEEEEeccCCcccccchhhcCCCcEEEEEeccceeeEEEeccEEEEee
Confidence 445555666666533222257899999999999999999999999874
No 61
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=59.10 E-value=12 Score=22.43 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=24.4
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEee
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (164)
..|.+||.|+-.=.+ +..+|-++|.+|..
T Consensus 11 ~~f~vgd~VmaRW~G-d~~yYparItSits 39 (68)
T 2dig_A 11 RKFADGEVVRGRWPG-SSLYYEVEILSHDS 39 (68)
T ss_dssp CSSCSSCEEEEECTT-TCCEEEEEEEEEET
T ss_pred eEeecCCEEEEEccC-CccceEEEEEEecc
Confidence 378999999998664 37999999999993
No 62
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=58.54 E-value=4.5 Score=26.45 Aligned_cols=29 Identities=14% Similarity=0.038 Sum_probs=24.3
Q ss_pred cCcEEccCCEEEEecCCCCCCCeEEEEeEEe
Q 031164 19 ISKTIKPGDCVLMRPSEPSKPSYVAKIERIE 49 (164)
Q Consensus 19 ~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~ 49 (164)
.+..+++||.|...-.+ -+.|-|+|.+..
T Consensus 5 ~g~~~~~GdlVwaK~~g--~p~WPa~V~~~~ 33 (110)
T 2daq_A 5 SSGKLHYKQIVWVKLGN--YRWWPAEICNPR 33 (110)
T ss_dssp CCCSCCSSEEEEEECSS--SCEEEEEECCTT
T ss_pred CCCCCCCCCEEEEEeCC--CCCCceeeCChh
Confidence 34588999999999887 589999998773
No 63
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=58.43 E-value=5.1 Score=27.88 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=32.1
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeecCCCC--eEEEEEEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGA--NVKVHVRWYYR 66 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~--~~~v~v~Wfyr 66 (164)
..+++||.|...-.+ -+.|-|+|.+.......+ ...+.|+||-.
T Consensus 10 ~~~~~GDlVWaKvkG--yPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~ 55 (147)
T 1khc_A 10 KEFGIGDLVWGKIKG--FSWWPAMVVSWKATSKRQAMPGMRWVQWFGD 55 (147)
T ss_dssp SSCCTTCEEEEEETT--TEEEEEEEECGGGTTSCCCCTTEEEEEETTT
T ss_pred ccCcCCCEEEEecCC--cCCCCEEeccchhhhcccCCCCeEEEEEecC
Confidence 489999999999877 589999998875532111 14678888753
No 64
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=54.97 E-value=4.1 Score=26.77 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=17.5
Q ss_pred EE-eeCCCCCCCCceEeCCccCCCC
Q 031164 141 YC-KCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 141 ~C-~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
.| +|......+..+++|+.|.++|
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~y 87 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGF 87 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEE
T ss_pred ccccccCcCCCccceEEcCCCCCee
Confidence 44 3666655566799999999876
No 65
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.30 E-value=8.1 Score=22.35 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=31.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYR 66 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyr 66 (164)
..+.+||.|.|..+. -.-..|.|+++..+ . ..+.+.-|-|
T Consensus 6 ~~f~~GD~V~V~~Gp--f~g~~G~V~evd~e---~-v~V~v~~fg~ 45 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGE--LINLQGKILSVDGN---K-ITIMPKHEDL 45 (59)
T ss_dssp SSCCTTSEEEECSST--TTTCEEEECCCBTT---E-EEEEECCSSC
T ss_pred ccCCCCCEEEEeecC--CCCCEEEEEEEeCC---E-EEEEEEecCC
Confidence 468999999999988 58899999998742 3 7777766655
No 66
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=53.24 E-value=19 Score=23.41 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=30.3
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeecC-----CCC-eEEEEEEEee
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDA-----RGA-NVKVHVRWYY 65 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~-----~g~-~~~v~v~Wfy 65 (164)
..+++||.|...-.+ -+.|-|+|..-..-. .+. ...+.|++|-
T Consensus 4 ~~~~~GdlVwaK~~g--yP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg 52 (108)
T 2l89_A 4 DRLNFGDRILVKAPG--YPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP 52 (108)
T ss_dssp CCCCTTEEEEEECSS--SCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT
T ss_pred CcccCCCEEEEEeCC--cCCCceEecCcccCcHHHhhccCCCCeEEEEECC
Confidence 478999999999887 589999997643211 111 2567777764
No 67
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=53.01 E-value=17 Score=24.10 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.2
Q ss_pred cCcCcEEccCCEEEEecCCC
Q 031164 17 KSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 17 ~g~~~~~~vGD~V~v~~~~~ 36 (164)
+|...+++.||++++.++.+
T Consensus 85 ~g~~~~l~~GD~~~ip~g~~ 104 (123)
T 3bcw_A 85 DGTVHAVKAGDAFIMPEGYT 104 (123)
T ss_dssp TCCEEEEETTCEEEECTTCC
T ss_pred CCeEEEECCCCEEEECCCCe
Confidence 34445789999999998874
No 68
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=52.46 E-value=16 Score=20.68 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=32.2
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeeccc
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPE 68 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~ 68 (164)
.+++||.|.|..+. -.-+.|.|.++... .+. ..+.+..|-|.-
T Consensus 4 ~~~~Gd~V~V~~Gp--f~g~~g~v~~v~~~-k~~-v~V~v~~~Gr~t 46 (58)
T 1nz9_A 4 AFREGDQVRVVSGP--FADFTGTVTEINPE-RGK-VKVMVTIFGRET 46 (58)
T ss_dssp SCCTTCEEEECSGG--GTTCEEEEEEEETT-TTE-EEEEEESSSSEE
T ss_pred ccCCCCEEEEeecC--CCCcEEEEEEEcCC-CCE-EEEEEEeCCCEE
Confidence 56899999999887 47789999999743 233 667777766543
No 69
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=51.90 E-value=16 Score=23.32 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=17.2
Q ss_pred EEEc-CcCcEEccCCEEEEecCCC
Q 031164 14 YTVK-SISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 14 ~~i~-g~~~~~~vGD~V~v~~~~~ 36 (164)
++++ |....++.||.+++.++.+
T Consensus 62 ~~i~~g~~~~l~~GD~i~ip~g~~ 85 (101)
T 1o5u_A 62 VTTEDGKKYVIEKGDLVTFPKGLR 85 (101)
T ss_dssp EEETTCCEEEEETTCEEEECTTCE
T ss_pred EEECCCCEEEECCCCEEEECCCCc
Confidence 4566 5556789999999998763
No 70
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=51.22 E-value=5.5 Score=25.97 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=16.8
Q ss_pred EE-eeCCCCCCCCceEeCCccCCCC
Q 031164 141 YC-KCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 141 ~C-~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
.| +|.+..+++ .+++|+.|.++|
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~y 79 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGY 79 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEE
T ss_pred cccccCccCCCC-CeeECCCCCcHH
Confidence 45 366666544 599999999886
No 71
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=50.73 E-value=5 Score=25.09 Aligned_cols=20 Identities=20% Similarity=0.589 Sum_probs=14.5
Q ss_pred eeCCCCCCCCceEeCCccCC
Q 031164 143 KCEMPYNPDDLMVQCEGCSD 162 (164)
Q Consensus 143 ~c~~~~~pD~~~~~C~~C~~ 162 (164)
.|.++..++..+.+|+.|++
T Consensus 7 ~C~~~l~~~~~~~~C~~C~~ 26 (81)
T 2jrp_A 7 VCHHALERNGDTAHCETCAK 26 (81)
T ss_dssp SSCSCCEECSSEEECTTTCC
T ss_pred CCCCccccCCCceECccccc
Confidence 36777777777777888875
No 72
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=50.28 E-value=19 Score=21.49 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.2
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
.+++||-|+..=++ ..+|-|+|.+|-.+
T Consensus 6 ~~~vGd~vmArW~D--~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 6 EFQINEQVLACWSD--CRFYPAKVTAVNKD 33 (67)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEECTT
T ss_pred ccccCCEEEEEcCC--CCEeeEEEEEECCC
Confidence 67999999999744 78999999999865
No 73
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=49.66 E-value=13 Score=24.35 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=17.1
Q ss_pred EEEcCcCcEEccCCEEEEecCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~ 35 (164)
++++|...+++.||+|++.++.
T Consensus 72 ~~~~g~~~~l~~GD~v~ip~g~ 93 (119)
T 3lwc_A 72 VSTDGETVTAGPGEIVYMPKGE 93 (119)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEECCCCEEEECCCC
Confidence 4556665678999999999876
No 74
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=49.03 E-value=14 Score=23.74 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=17.2
Q ss_pred EEEcCcC--cEEccCCEEEEecCC
Q 031164 14 YTVKSIS--KTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g~~--~~~~vGD~V~v~~~~ 35 (164)
++++|.. ..++.||++++.+..
T Consensus 66 l~~~~~~~~~~l~~Gd~i~ipa~~ 89 (112)
T 2opk_A 66 IECEGDTAPRVMRPGDWLHVPAHC 89 (112)
T ss_dssp EEETTCSSCEEECTTEEEEECTTC
T ss_pred EEECCEEEEEEECCCCEEEECCCC
Confidence 4566665 678999999999876
No 75
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=49.01 E-value=34 Score=21.85 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=23.6
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeecC
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 52 (164)
.|.+|+.|++..+ ...+-|+|+++....
T Consensus 25 ~~~vG~kv~v~~~---~~~yeAeIl~ir~~~ 52 (94)
T 2rnz_A 25 DIIIKCQCWVQKN---DEERLAEILSINTRK 52 (94)
T ss_dssp GCCTTEEEEEECS---SCEEEEEEEEEECSS
T ss_pred cccCCCEEEEEEC---CEEEEEEEEEEEEcC
Confidence 5899999999953 478999999999754
No 76
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=48.53 E-value=5.6 Score=25.88 Aligned_cols=17 Identities=18% Similarity=0.649 Sum_probs=12.7
Q ss_pred CCCCCCceEeCCccCCC
Q 031164 147 PYNPDDLMVQCEGCSDW 163 (164)
Q Consensus 147 ~~~pD~~~~~C~~C~~~ 163 (164)
.+.--.++++|++|+.+
T Consensus 31 aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 31 AYEKGTVLISCPHCKVR 47 (100)
T ss_dssp HHHTSEEEEECTTTCCE
T ss_pred HhhCCEEEEEcCCCccc
Confidence 34444589999999875
No 77
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=46.45 E-value=14 Score=25.71 Aligned_cols=22 Identities=5% Similarity=0.220 Sum_probs=17.5
Q ss_pred EEEcCcCcEEccCCEEEEecCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~ 35 (164)
++++|....++.||++++.++.
T Consensus 97 l~i~g~~~~l~~GD~i~iP~G~ 118 (151)
T 4axo_A 97 IIIDGRKVSASSGELIFIPKGS 118 (151)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEEcCCCEEEECCCC
Confidence 4566766678999999999876
No 78
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.41 E-value=7.1 Score=25.70 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=14.7
Q ss_pred eCCCCCCCCceEeCCccCCCC
Q 031164 144 CEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 144 c~~~~~pD~~~~~C~~C~~~~ 164 (164)
|.+..+ +..++.|+.|.++|
T Consensus 64 C~~~~~-~~~ll~Cd~C~~~y 83 (114)
T 2kwj_A 64 CGTSEN-DDQLLFCDDCDRGY 83 (114)
T ss_dssp TTCCTT-TTTEEECSSSCCEE
T ss_pred ccccCC-CCceEEcCCCCccc
Confidence 555544 34699999999876
No 79
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.37 E-value=16 Score=21.53 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=24.3
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
-.+.+||.|+..=.+ ..+|.|.|.++...
T Consensus 6 ~~f~eGqdVLarWsD--GlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTD--GLYYLGKIKRVSSS 34 (63)
T ss_dssp CCCCTTCEEEEECTT--SCEEEEEECCCCST
T ss_pred cceecCCEEEEEecC--CCEEEEEEEEEecC
Confidence 478999999998555 58999999998765
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=45.39 E-value=6 Score=22.84 Aligned_cols=20 Identities=25% Similarity=0.831 Sum_probs=14.5
Q ss_pred EE-eeCCCCCCCCceEeCCccCCCC
Q 031164 141 YC-KCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 141 ~C-~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
.| +|.+. ..++.|+.|.+||
T Consensus 7 ~C~vC~~~----g~ll~Cd~C~~~f 27 (60)
T 2puy_A 7 FCSVCRKS----GQLLMCDTCSRVY 27 (60)
T ss_dssp SCTTTCCC----SSCEECSSSSCEE
T ss_pred CCcCCCCC----CcEEEcCCCCcCE
Confidence 34 36553 3699999999886
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=44.34 E-value=7 Score=22.70 Aligned_cols=24 Identities=21% Similarity=0.642 Sum_probs=17.3
Q ss_pred CCceEEe-eCCCCCCCCceEeCCccCCCC
Q 031164 137 RVAVYCK-CEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 137 ~~~~~C~-c~~~~~pD~~~~~C~~C~~~~ 164 (164)
.....|. |.+. ..++.|+.|..||
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~f 33 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAY 33 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEE
T ss_pred CCCCCCccCCCC----CcEEECCCCChhh
Confidence 3345674 7763 3699999999886
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.56 E-value=6.6 Score=22.31 Aligned_cols=21 Identities=24% Similarity=0.746 Sum_probs=15.3
Q ss_pred eEE-eeCCCCCCCCceEeCCccCCCC
Q 031164 140 VYC-KCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 140 ~~C-~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
..| +|.+. ..++.|+.|.+||
T Consensus 10 ~~C~vC~~~----g~ll~Cd~C~~~~ 31 (56)
T 2yql_A 10 DFCSVCRKS----GQLLMCDTCSRVY 31 (56)
T ss_dssp CSCSSSCCS----SCCEECSSSSCEE
T ss_pred CCCccCCCC----CeEEEcCCCCcce
Confidence 356 36664 3699999999886
No 83
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=43.40 E-value=17 Score=24.41 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=17.5
Q ss_pred EEEcCcCcEEccCCEEEEecCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~ 35 (164)
++++|...+++.||++++.++.
T Consensus 88 l~~~g~~~~l~~GD~i~~p~g~ 109 (133)
T 2pyt_A 88 VRHEGETMIAKAGDVMFIPKGS 109 (133)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEECCCcEEEECCCC
Confidence 4566666678999999999877
No 84
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=43.34 E-value=7.7 Score=29.01 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=27.8
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeecCC-----CCeEEEEEEEeeccc
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDAR-----GANVKVHVRWYYRPE 68 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~-----g~~~~v~v~Wfyrp~ 68 (164)
.|++||.|-....+. ..-+=|+|+.+.+... +.....+|.|=-.|+
T Consensus 2 ~yki~~~vd~~d~~~-Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~ 52 (226)
T 3ask_A 2 LYKVNEYVDARDTNM-GAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPE 52 (226)
T ss_dssp CSCTTCEEEEECTTT-CCEEEEEEEEEEECC------CCCEEEEEEETTCGG
T ss_pred ccccCceEEeeecCC-CceeEEEEEEEeccccccCCCCCceEEEeecccCcc
Confidence 478888888887553 4556778888877431 112555665543333
No 85
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=42.45 E-value=72 Score=22.06 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=24.8
Q ss_pred EEEcCcCcEEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeecccccCCcc
Q 031164 14 YTVKSISKTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEESIGGR 74 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e~~~~~ 74 (164)
+.++|....++.||++++.+..+ . .+... |. ..+ +.|+..|....+|.
T Consensus 139 ~~~~~~~~~l~~GD~i~i~~~~~---H------~~~n~--~~-~~~-~l~v~~~~~~~~~~ 186 (192)
T 1y9q_A 139 VFFDEQWHELQQGEHIRFFSDQP---H------GYAAV--TE-KAV-FQNIVAYPRREGGS 186 (192)
T ss_dssp EEETTEEEEECTTCEEEEECSSS---E------EEEES--SS-CEE-EEEEEECCC-----
T ss_pred EEECCEEEEeCCCCEEEEcCCCC---e------EeECC--CC-CcE-EEEEEecCcccCCc
Confidence 34455545778899999987763 1 11212 22 223 77777766555543
No 86
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=41.91 E-value=24 Score=22.22 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=17.5
Q ss_pred EEEcCcCcEEccCCEEEEecCCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
+.++|....++.||.+++.+..+
T Consensus 71 ~~i~~~~~~l~~Gd~i~i~~~~~ 93 (114)
T 2ozj_A 71 ITFDDQKIDLVPEDVLMVPAHKI 93 (114)
T ss_dssp EEETTEEEEECTTCEEEECTTCC
T ss_pred EEECCEEEEecCCCEEEECCCCc
Confidence 45566556789999999998874
No 87
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=39.49 E-value=47 Score=21.50 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
..|.+|+-|++..+ ...|-|+|+++...
T Consensus 21 ~~f~vGekVl~~~~---~~~YeAkIl~v~~~ 48 (102)
T 2f5k_A 21 PKFQEGERVLCFHG---PLLYEAKCVKVAIK 48 (102)
T ss_dssp CSCCTTCEEEEESS---SSEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEEC---CEEEEEEEEEEEEc
Confidence 36899999999873 47999999999974
No 88
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=38.93 E-value=34 Score=22.87 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=24.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
..|+.||.|.|.++. +.--.|+|.++...
T Consensus 41 ~~IkkGD~V~Vi~G~--dKGk~GkV~~V~~k 69 (120)
T 1vq8_T 41 VRVNAGDTVEVLRGD--FAGEEGEVINVDLD 69 (120)
T ss_dssp EECCTTCEEEECSST--TTTCEEEEEEEETT
T ss_pred ccccCCCEEEEEecC--CCCCEEEEEEEECC
Confidence 368999999999987 46789999999864
No 89
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=38.54 E-value=4.9 Score=21.41 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=10.0
Q ss_pred ceEeCCccCCCC
Q 031164 153 LMVQCEGCSDWS 164 (164)
Q Consensus 153 ~~~~C~~C~~~~ 164 (164)
.|+.|+.|++.|
T Consensus 10 ~yl~CE~C~~~~ 21 (39)
T 2l9z_A 10 FTIWCTLCDRAY 21 (39)
T ss_dssp CSEEEGGGTEEE
T ss_pred hhhHHHHHhhhc
Confidence 789999998753
No 90
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=38.33 E-value=39 Score=19.56 Aligned_cols=29 Identities=34% Similarity=0.388 Sum_probs=23.4
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEee
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (164)
..+++||.++..=.++ ...|=|+|+++..
T Consensus 7 ~~~~vGd~c~A~~s~D-g~wYrA~I~~v~~ 35 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSED-GQCYEAEIEEIDE 35 (64)
T ss_dssp SCCCTTCEEEEECTTT-SSEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCC-CCEEEEEEEEEcC
Confidence 4689999999886442 5789999999985
No 91
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=38.01 E-value=61 Score=21.88 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=24.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
..|.+|+.|++.-.+ ...|-|+|+++...
T Consensus 11 ~~~~vGe~v~~~~~d--~~~y~AkIl~i~~~ 39 (133)
T 1wgs_A 11 VTVEIGETYLCRRPD--STWHSAEVIQSRVN 39 (133)
T ss_dssp CCCCTTSEEEEEETT--TEEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEeCC--CCEEEEEEEEEEec
Confidence 368999999999764 47899999999875
No 92
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=37.77 E-value=32 Score=20.70 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=22.3
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
+.+++||+|-|-.+. -.--.|.|..+..+
T Consensus 16 K~F~~GDHVkVi~G~--~~getGlVV~v~~d 44 (69)
T 2do3_A 16 KYFKMGDHVKVIAGR--FEGDTGLIVRVEEN 44 (69)
T ss_dssp SSCCTTCEEEESSST--TTTCEEEEEEECSS
T ss_pred eeccCCCeEEEeccE--EcCceEEEEEEeCC
Confidence 578999999999986 35667777777644
No 93
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=37.24 E-value=1.1e+02 Score=22.75 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=31.5
Q ss_pred EEccCCEEEEecCC--CCCCCeEEEEeEEeecCCCCeEEEEEEEeec
Q 031164 22 TIKPGDCVLMRPSE--PSKPSYVAKIERIESDARGANVKVHVRWYYR 66 (164)
Q Consensus 22 ~~~vGD~V~v~~~~--~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyr 66 (164)
.+++||.|.-..-+ -+....||+|.++..+..+....+.|.=+..
T Consensus 169 ~i~~GD~VvTSGl~gifP~GipVG~V~~V~~~~~~~~~~i~v~P~ad 215 (255)
T 2j5u_A 169 KFKKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFIKPGAD 215 (255)
T ss_dssp CCCTTCEEEECCTTSSSCTTCEEEEEEEEEECTTSSEEEEEEEESSC
T ss_pred CCCCCCEEEECCCCCcCCCCCEEEEEEEEeeCCCCceEEEEEEECCC
Confidence 68999988766533 2356789999999988766545555554433
No 94
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=37.20 E-value=16 Score=24.31 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.9
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
.|+.||.|.|.++. +.--.|+|.++...
T Consensus 15 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 42 (115)
T 2zjr_R 15 HFKKGDTVIVLSGK--HKGQTGKVLLALPR 42 (115)
T ss_dssp SSCTTSEEECCSSS--STTCEEEEEEEETT
T ss_pred cccCCCEEEEeEcC--CCCcEEEEEEEECC
Confidence 47899999999987 47788999999865
No 95
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.10 E-value=42 Score=22.44 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=24.2
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
..|+.||-|.|.++. +.--.|+|.++...
T Consensus 44 ~~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~k 72 (121)
T 3j21_U 44 LPVRVGDKVRIMRGD--YKGHEGKVVEVDLK 72 (121)
T ss_dssp EECCSSSEEEECSSS--CSSEEEEEEEEETT
T ss_pred cccccCCEEEEeecC--CCCcEeEEEEEEec
Confidence 367899999999997 46668999999865
No 96
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=36.67 E-value=24 Score=24.90 Aligned_cols=22 Identities=14% Similarity=-0.061 Sum_probs=16.0
Q ss_pred EEEcCcCcEEccCCEEEEecCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~ 35 (164)
++++|...++..||++++.+..
T Consensus 123 vtl~g~~~~L~~Gds~~iP~g~ 144 (166)
T 2vpv_A 123 VTVCKNKFLSVKGSTFQIPAFN 144 (166)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEEcCCCEEEECCCC
Confidence 4566665667788888888766
No 97
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=36.63 E-value=29 Score=20.89 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=14.8
Q ss_pred EEcCcCcEEccCCEEEEecCC
Q 031164 15 TVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.++|....++.||.+++.++.
T Consensus 63 ~~~~~~~~l~~Gd~~~ip~~~ 83 (105)
T 1v70_A 63 RVGEEEALLAPGMAAFAPAGA 83 (105)
T ss_dssp EETTEEEEECTTCEEEECTTS
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 344444567889998888765
No 98
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=36.31 E-value=13 Score=16.37 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=7.4
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 4688888765
No 99
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=36.29 E-value=17 Score=25.51 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=16.8
Q ss_pred EEEcCcCcEEccCCEEEEecCCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
+.++|....++.||.|+|.++..
T Consensus 81 v~idge~~~l~~GD~v~IPpg~~ 103 (157)
T 4h7l_A 81 IELNGQSYPLTKLLAISIPPLVR 103 (157)
T ss_dssp EEETTEEEECCTTEEEEECTTCC
T ss_pred EEECCEEEEeCCCCEEEECCCCe
Confidence 34555545679999999998873
No 100
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=35.92 E-value=9.6 Score=22.62 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=10.4
Q ss_pred ceEeCCccCCCC
Q 031164 153 LMVQCEGCSDWS 164 (164)
Q Consensus 153 ~~~~C~~C~~~~ 164 (164)
.++.|+.|.++|
T Consensus 23 ~ll~Cd~C~~~~ 34 (66)
T 2lri_C 23 DVLRCTHCAAAF 34 (66)
T ss_dssp TCEECSSSCCEE
T ss_pred eEEECCCCCCce
Confidence 489999999876
No 101
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=34.70 E-value=25 Score=22.49 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=17.0
Q ss_pred EEEcCcCcEEccCCEEEEecCCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
++++|....++.||.+++.+...
T Consensus 69 ~~i~~~~~~l~~Gd~i~ip~~~~ 91 (114)
T 3fjs_A 69 IGVDGAQRRLHQGDLLYLGAGAA 91 (114)
T ss_dssp EEETTEEEEECTTEEEEECTTCC
T ss_pred EEECCEEEEECCCCEEEECCCCc
Confidence 45566556788999999988763
No 102
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=34.68 E-value=41 Score=22.11 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.2
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeecC
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDA 52 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~ 52 (164)
.++.||-|.|.++. +.--.|+|.++....
T Consensus 6 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~~ 34 (110)
T 3v2d_Y 6 HVKKGDTVLVASGK--YKGRVGKVKEVLPKK 34 (110)
T ss_dssp SCCTTSEEEECSST--TTTCEEEEEEEEGGG
T ss_pred ccCCCCEEEEeEcC--CCCeEeEEEEEECCC
Confidence 57899999999987 466679999998653
No 103
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=34.51 E-value=29 Score=21.59 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.3
Q ss_pred EEEcC-cCcEEccCCEEEEecCCC
Q 031164 14 YTVKS-ISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 14 ~~i~g-~~~~~~vGD~V~v~~~~~ 36 (164)
+.++| ....++.||.+++.++..
T Consensus 61 ~~~~~~~~~~l~~Gd~~~ip~~~~ 84 (107)
T 2i45_A 61 VDFADGGSMTIREGEMAVVPKSVS 84 (107)
T ss_dssp EEETTSCEEEECTTEEEEECTTCC
T ss_pred EEECCCcEEEECCCCEEEECCCCc
Confidence 45566 556789999999998763
No 104
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=34.11 E-value=33 Score=21.48 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=16.0
Q ss_pred EEEcCcCcEEccCCEEEEecCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~ 35 (164)
+.++|....++.||.+++.+..
T Consensus 67 ~~~~~~~~~l~~Gd~~~ip~~~ 88 (116)
T 2pfw_A 67 VNVDGVIKVLTAGDSFFVPPHV 88 (116)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEeCCCCEEEECcCC
Confidence 3445555678899999998876
No 105
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=33.96 E-value=46 Score=22.43 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEccCCEEEEecCCCC-CCC--eEEEEeEEe
Q 031164 22 TIKPGDCVLMRPSEPS-KPS--YVAKIERIE 49 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~-~~~--~i~~I~~i~ 49 (164)
.+.+||-|-|.+...+ ++. |.|+|.++.
T Consensus 60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 60 EITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 5789999999986432 333 799998887
No 106
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=33.74 E-value=11 Score=16.69 Aligned_cols=11 Identities=27% Similarity=0.452 Sum_probs=7.6
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
...|+.|++.|
T Consensus 3 ~~~C~~C~~~f 13 (30)
T 2m0d_A 3 PYQCDYCGRSF 13 (30)
T ss_dssp CEECTTTCCEE
T ss_pred CccCCCCCccc
Confidence 35788888753
No 107
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=33.73 E-value=4.5 Score=26.22 Aligned_cols=24 Identities=21% Similarity=0.755 Sum_probs=16.7
Q ss_pred ceEE-eeCCCCCCCCceEeCCccCC
Q 031164 139 AVYC-KCEMPYNPDDLMVQCEGCSD 162 (164)
Q Consensus 139 ~~~C-~c~~~~~pD~~~~~C~~C~~ 162 (164)
...| .|.++..++..+..|+.|++
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~~C~~ 56 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCRSCGE 56 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEETTTCC
T ss_pred cccCccCCCcceecCCEEECccccc
Confidence 3466 47777767777777888875
No 108
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=33.62 E-value=20 Score=21.83 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=23.5
Q ss_pred EEccCCEEEEecCC-CCCCCeEEEEeEEeec
Q 031164 22 TIKPGDCVLMRPSE-PSKPSYVAKIERIESD 51 (164)
Q Consensus 22 ~~~vGD~V~v~~~~-~~~~~~i~~I~~i~~~ 51 (164)
.+.+|+.|++.-.+ .....+-|+|+++...
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~ 35 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEID 35 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc
Confidence 67899999999763 1236799999998864
No 109
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=33.32 E-value=84 Score=20.24 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=27.4
Q ss_pred cCcCcEEccCCEEEEecCCC--CCCCeEEEEeEEeecC
Q 031164 17 KSISKTIKPGDCVLMRPSEP--SKPSYVAKIERIESDA 52 (164)
Q Consensus 17 ~g~~~~~~vGD~V~v~~~~~--~~~~~i~~I~~i~~~~ 52 (164)
.|....|.+|+-|++.-+++ ....|=|+|+.+....
T Consensus 14 ~~~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~ 51 (101)
T 3m9q_A 14 RDETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR 51 (101)
T ss_dssp CCCCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE
T ss_pred ccCCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecC
Confidence 44456899999999998641 1467899999998753
No 110
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=33.23 E-value=40 Score=21.22 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=16.8
Q ss_pred EEEcCcCc-EEccCCEEEEecCC
Q 031164 14 YTVKSISK-TIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g~~~-~~~vGD~V~v~~~~ 35 (164)
+.+++... .++.||.+++.+..
T Consensus 60 ~~i~~~~~~~l~~Gd~i~ip~~~ 82 (117)
T 2b8m_A 60 LTLEDQEPHNYKEGNIVYVPFNV 82 (117)
T ss_dssp EEETTSCCEEEETTCEEEECTTC
T ss_pred EEECCEEEEEeCCCCEEEECCCC
Confidence 45566666 88899999998876
No 111
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=33.08 E-value=52 Score=18.56 Aligned_cols=28 Identities=32% Similarity=0.159 Sum_probs=21.8
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEee
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (164)
.+++||.++..=.++ ...|=|+|.++..
T Consensus 3 ~~~~G~~c~A~~s~D-g~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSED-GCIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTT-SCEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCC-CCEEEEEEEEEcC
Confidence 578999988885432 5788999999954
No 112
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=32.92 E-value=15 Score=15.85 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=7.0
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 3688888754
No 113
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=32.54 E-value=31 Score=23.72 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=16.9
Q ss_pred EEEcCcCcEEccCCEEEEecCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~ 35 (164)
++++|....++.||+|+|.+..
T Consensus 77 v~v~g~~~~l~~Gd~i~ip~~~ 98 (156)
T 3kgz_A 77 CLVGETISDVAQGDLVFIPPMT 98 (156)
T ss_dssp EEETTEEEEEETTCEEEECTTC
T ss_pred EEECCEEEEeCCCCEEEECCCC
Confidence 4566665678899999998876
No 114
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=32.51 E-value=14 Score=21.40 Aligned_cols=22 Identities=18% Similarity=0.609 Sum_probs=15.2
Q ss_pred ceEE-eeCCCCCCCCceEeCCccCCCC
Q 031164 139 AVYC-KCEMPYNPDDLMVQCEGCSDWS 164 (164)
Q Consensus 139 ~~~C-~c~~~~~pD~~~~~C~~C~~~~ 164 (164)
...| +|... ..++.|+.|..+|
T Consensus 9 ~~~C~vC~~~----g~ll~Cd~C~~~f 31 (61)
T 1mm2_A 9 MEFCRVCKDG----GELLCCDTCPSSY 31 (61)
T ss_dssp CSSCTTTCCC----SSCBCCSSSCCCB
T ss_pred CCcCCCCCCC----CCEEEcCCCCHHH
Confidence 3456 36642 3599999999876
No 115
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=32.06 E-value=46 Score=22.66 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=32.6
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeecc
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRP 67 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp 67 (164)
..+.+||.|-|..+. -.-..|.|.++..++ +. ..+.+.-|-|+
T Consensus 90 ~~~~~Gd~VrI~~Gp--f~g~~g~V~~vd~~k-~~-v~V~v~~~gr~ 132 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGP--FKGQKAKVVKIDESK-DE-VVVQFIDAIVP 132 (152)
T ss_dssp TTCCTTCEEEECSST--TTTCEEEEEEEETTT-TE-EEEEESSCSSC
T ss_pred ccCCCCCEEEEeeec--CCCCEEEEEEEeCCC-CE-EEEEEEeccee
Confidence 367899999999877 578899999998653 33 56777666554
No 116
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=38.19 E-value=9.7 Score=17.02 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=7.0
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
.+|+.|++.|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2lvt_A 3 CQCVMCGKAF 12 (29)
Confidence 4688887754
No 117
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=31.70 E-value=38 Score=22.36 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=16.3
Q ss_pred EccCCEEEEecCCCCCCCeEEEEeEEee
Q 031164 23 IKPGDCVLMRPSEPSKPSYVAKIERIES 50 (164)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (164)
+.+||.|.|...+- ..--|.|+.+..
T Consensus 71 i~~GD~V~ve~~~~--~~~kG~I~~~~~ 96 (117)
T 2oqk_A 71 VNPGDIVLVSLRDF--QDSKGDIILKYT 96 (117)
T ss_dssp CCTTCEEEEEECTT--CTTEEEEEEECC
T ss_pred CCCCCEEEEEEEcC--CCCeEEEEEEec
Confidence 45888888886642 123567766654
No 118
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=37.53 E-value=10 Score=16.50 Aligned_cols=10 Identities=30% Similarity=0.651 Sum_probs=6.8
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 4688887654
No 119
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=31.27 E-value=31 Score=21.24 Aligned_cols=21 Identities=10% Similarity=0.340 Sum_probs=14.4
Q ss_pred EEcCcCcEEccCCEEEEecCC
Q 031164 15 TVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.+++....++.||.+++.+..
T Consensus 58 ~~~~~~~~l~~Gd~~~i~~~~ 78 (113)
T 2gu9_A 58 IVDGHTQALQAGSLIAIERGQ 78 (113)
T ss_dssp EETTEEEEECTTEEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 344444567888888888765
No 120
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=31.13 E-value=36 Score=21.26 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=15.6
Q ss_pred EEcCcCcEEccCCEEEEecCCC
Q 031164 15 TVKSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
.++|....+..||.+++.++..
T Consensus 74 ~~~~~~~~l~~Gd~~~ip~~~~ 95 (115)
T 1yhf_A 74 TIDQETYRVAEGQTIVMPAGIP 95 (115)
T ss_dssp EETTEEEEEETTCEEEECTTSC
T ss_pred EECCEEEEECCCCEEEECCCCC
Confidence 3455545678899999888763
No 121
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=31.07 E-value=1.6e+02 Score=22.23 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=17.2
Q ss_pred EEEc-CcCcEEccCCEEEEecCCC
Q 031164 14 YTVK-SISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 14 ~~i~-g~~~~~~vGD~V~v~~~~~ 36 (164)
++++ |...+++.||++|+.++..
T Consensus 103 l~l~~g~~~~L~~Gds~y~p~~~~ 126 (266)
T 4e2q_A 103 LTNTSSSSKKLTVDSYAYLPPNFH 126 (266)
T ss_dssp EEC--CCCEEECTTEEEEECTTCC
T ss_pred EEECCCcEEEEcCCCEEEECCCCC
Confidence 4555 6667889999999998773
No 122
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=31.06 E-value=24 Score=16.88 Aligned_cols=10 Identities=40% Similarity=0.913 Sum_probs=8.2
Q ss_pred ceEeCCccCC
Q 031164 153 LMVQCEGCSD 162 (164)
Q Consensus 153 ~~~~C~~C~~ 162 (164)
..+||+-|++
T Consensus 5 f~vqcpvcqq 14 (29)
T 3vhs_A 5 FQVQCPVCQQ 14 (29)
T ss_dssp CEEECTTTCC
T ss_pred eeeeChHHHH
Confidence 3789999986
No 123
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.05 E-value=48 Score=20.75 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=24.4
Q ss_pred cEEccCCEEEEecC--CCCCCCeEEEEeEEeecC
Q 031164 21 KTIKPGDCVLMRPS--EPSKPSYVAKIERIESDA 52 (164)
Q Consensus 21 ~~~~vGD~V~v~~~--~~~~~~~i~~I~~i~~~~ 52 (164)
..|.+|+-|++.-. +.+...+-|+|+++....
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~ 41 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDIS 41 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSS
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcC
Confidence 37899999999863 122578899999998753
No 124
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=30.85 E-value=15 Score=25.34 Aligned_cols=27 Identities=26% Similarity=0.707 Sum_probs=17.5
Q ss_pred CceEEeeCCCCC--CCC----ceEeCCccCCCC
Q 031164 138 VAVYCKCEMPYN--PDD----LMVQCEGCSDWS 164 (164)
Q Consensus 138 ~~~~C~c~~~~~--pD~----~~~~C~~C~~~~ 164 (164)
+...|.|..-+. .+. ..+.|++|+.|+
T Consensus 111 f~~~CrCG~~f~i~~~~l~~~~~v~C~sCSl~~ 143 (155)
T 2l6l_A 111 FYLSCRCGGKYSVSKDEAEEVSLISCDTCSLII 143 (155)
T ss_dssp EEEECSSSCEEEEETTHHHHCCEEECSSSSCEE
T ss_pred EEEcCCCCCeEEecHHHhCCCCEEECCCCceEE
Confidence 345676664442 111 589999999985
No 125
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.61 E-value=18 Score=16.02 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=7.2
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 4688888754
No 126
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=30.38 E-value=14 Score=16.25 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=7.0
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 5688887653
No 127
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.25 E-value=14 Score=16.09 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=7.1
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 5788888743
No 128
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.22 E-value=57 Score=19.69 Aligned_cols=28 Identities=39% Similarity=0.431 Sum_probs=23.6
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEee
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (164)
..+++||.|+-.=.| ...|-|+|.++..
T Consensus 8 ~~~kvGd~clA~wsD--g~~Y~A~I~~v~~ 35 (74)
T 2equ_A 8 FDFKAGEEVLARWTD--CRYYPAKIEAINK 35 (74)
T ss_dssp CCCCTTCEEEEECSS--SSEEEEEEEEEST
T ss_pred CCCCCCCEEEEECCC--CCEEEEEEEEECC
Confidence 368999999999763 6899999999964
No 129
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=30.14 E-value=37 Score=21.70 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=15.5
Q ss_pred EEcCcCcEEccCCEEEEecCC
Q 031164 15 TVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.++|....++.||.++|.++.
T Consensus 68 ~i~~~~~~l~~Gd~~~i~~~~ 88 (128)
T 4i4a_A 68 RINDEDFPVTKGDLIIIPLDS 88 (128)
T ss_dssp EETTEEEEEETTCEEEECTTC
T ss_pred EECCEEEEECCCcEEEECCCC
Confidence 445554567889999998876
No 130
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=29.91 E-value=54 Score=20.52 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=24.5
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
..+++||-|+-.=.+ ..+|-|+|.+|-.+
T Consensus 20 ~~f~vGd~VlArW~D--~~yYPAkI~sV~~~ 48 (85)
T 3qii_A 20 SEFQINEQVLACWSD--CRFYPAKVTAVNKD 48 (85)
T ss_dssp -CCCTTCEEEEECTT--SCEEEEEEEEECTT
T ss_pred cccccCCEEEEEeCC--CCEeeEEEEEECCC
Confidence 478999999999844 68999999999875
No 131
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.75 E-value=15 Score=16.14 Aligned_cols=10 Identities=20% Similarity=0.518 Sum_probs=7.1
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 5788887643
No 132
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=29.72 E-value=18 Score=15.86 Aligned_cols=10 Identities=40% Similarity=0.620 Sum_probs=7.2
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 4688888754
No 133
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=29.54 E-value=41 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=15.0
Q ss_pred EEcCcCcEEccCCEEEEecC
Q 031164 15 TVKSISKTIKPGDCVLMRPS 34 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~ 34 (164)
.++|....++.||++++.+.
T Consensus 82 ~~~~~~~~l~~Gd~i~i~~~ 101 (162)
T 3l2h_A 82 TMENDQYPIAPGDFVGFPCH 101 (162)
T ss_dssp EETTEEEEECTTCEEEECTT
T ss_pred EECCEEEEeCCCCEEEECCC
Confidence 44555566889999999986
No 134
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=29.53 E-value=52 Score=21.27 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=23.4
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
.++.||-|.|.++. +.--.|+|.++...
T Consensus 3 ~IkkGD~V~Vi~Gk--dKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 3 KIRRDDEVIVLTGK--DKGKRGKVKNVLSS 30 (102)
T ss_dssp SSCSSCEEEECSSS--STTCEEEEEEEETT
T ss_pred CccCCCEEEEeEcC--CCCeeeEEEEEEeC
Confidence 46899999999987 46678999999865
No 135
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.53 E-value=47 Score=22.94 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=23.9
Q ss_pred cEEccCCEEEEecCCCCCCCeE-EEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYV-AKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i-~~I~~i~~~ 51 (164)
..|+.||.|.|.++.+ .--. |+|..+...
T Consensus 47 ~~IkkGD~V~Vi~Gkd--KGk~~GkV~~V~~k 76 (145)
T 2zkr_t 47 MPIRKDDEVQVVRGHY--KGQQIGKVVQVYRK 76 (145)
T ss_dssp CBCCTTCEEEECSSTT--TTCCSEEEEEEETT
T ss_pred cccCCCCEEEEeecCC--CCcceeEEEEEECC
Confidence 3689999999999873 5566 999999864
No 136
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=29.34 E-value=41 Score=23.24 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=17.1
Q ss_pred EEEcCcCcEEccCCEEEEecCCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
++++|....++.||+|+|.+...
T Consensus 89 ~~i~~~~~~l~~Gd~i~ip~~~~ 111 (167)
T 3ibm_A 89 VVLDDRVEPLTPLDCVYIAPHAW 111 (167)
T ss_dssp EEETTEEEEECTTCEEEECTTCC
T ss_pred EEECCEEEEECCCCEEEECCCCc
Confidence 45566556789999999988763
No 137
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=29.28 E-value=31 Score=22.11 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=15.2
Q ss_pred EEcCcCcEEccCCEEEEecCC
Q 031164 15 TVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.++|....++.||.+++.+..
T Consensus 62 ~i~~~~~~l~~Gd~i~i~~~~ 82 (125)
T 3cew_A 62 TIDGEKIELQAGDWLRIAPDG 82 (125)
T ss_dssp EETTEEEEEETTEEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 445555577889999988776
No 138
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=29.21 E-value=1.2e+02 Score=19.88 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=24.5
Q ss_pred cEEccCCEEEEecCCCC--CCCeEEEEeEEeecCC
Q 031164 21 KTIKPGDCVLMRPSEPS--KPSYVAKIERIESDAR 53 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~--~~~~i~~I~~i~~~~~ 53 (164)
..|.+|+-|+..-.+.. ...|=|+|+++....+
T Consensus 18 ~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~ 52 (110)
T 3oa6_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKD 52 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEEC
T ss_pred cccCCCCEEEEEecCCCCCcccEEEEEEEEEeccC
Confidence 46899999999865532 3458999999976543
No 139
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=28.58 E-value=43 Score=23.24 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=16.9
Q ss_pred EEEcCcCcEEccCCEEEEecCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~ 35 (164)
++++|....++.||+|+|.+..
T Consensus 86 ~~v~g~~~~l~~GD~i~ip~g~ 107 (166)
T 3jzv_A 86 AMVGRAVSAVAPYDLVTIPGWS 107 (166)
T ss_dssp EEETTEEEEECTTCEEEECTTC
T ss_pred EEECCEEEEeCCCCEEEECCCC
Confidence 4566665678899999998876
No 140
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.82 E-value=20 Score=15.51 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=6.8
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 4588887754
No 141
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=27.64 E-value=30 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=15.4
Q ss_pred EE-cCcCcEEccCCEEEEecCCC
Q 031164 15 TV-KSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 15 ~i-~g~~~~~~vGD~V~v~~~~~ 36 (164)
++ +|....++.||.+++.++..
T Consensus 74 ~~~~~~~~~l~~Gd~~~i~~~~~ 96 (125)
T 3h8u_A 74 HQGNGIVTHLKAGDIAIAKPGQV 96 (125)
T ss_dssp ECSTTCEEEEETTEEEEECTTCC
T ss_pred EECCCeEEEeCCCCEEEECCCCE
Confidence 44 45445678899999887763
No 142
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=27.59 E-value=38 Score=21.54 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=15.6
Q ss_pred EEcCcCcEEccCCEEEEecCC
Q 031164 15 TVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.++|....++.||.+++.+..
T Consensus 75 ~~~~~~~~l~~Gd~~~ip~~~ 95 (126)
T 4e2g_A 75 TIGEETRVLRPGMAYTIPGGV 95 (126)
T ss_dssp EETTEEEEECTTEEEEECTTC
T ss_pred EECCEEEEeCCCCEEEECCCC
Confidence 445555678899999988776
No 143
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=33.53 E-value=13 Score=16.55 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=6.8
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 4 ~~C~~C~k~f 13 (30)
T 2lvr_A 4 YVCIHCQRQF 13 (30)
Confidence 4688887654
No 144
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=27.32 E-value=68 Score=21.32 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.4
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEee
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (164)
..+++||.|+.+..+ ..+|=|+|.++..
T Consensus 4 ~~v~vGq~V~akh~n--gryy~~~V~~~~~ 31 (118)
T 2qqr_A 4 QSITAGQKVISKHKN--GRFYQCEVVRLTT 31 (118)
T ss_dssp SCCCTTCEEEEECTT--SSEEEEEEEEEEE
T ss_pred ceeccCCEEEEECCC--CCEEeEEEEEEee
Confidence 368999999988776 6899999999854
No 145
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=27.26 E-value=66 Score=21.69 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=23.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
..|+.||-|.|-++.+ .--.|+|..+...
T Consensus 48 ~~IkkgD~V~Vi~Gkd--KGk~GkV~~V~~k 76 (127)
T 3u5e_Y 48 LPIRRDDEVLVVRGSK--KGQEGKISSVYRL 76 (127)
T ss_dssp EECCTTCEEEECSSTT--TTCEEEEEEEEGG
T ss_pred ccccCCCEEEEeecCC--CCccceEEEEECC
Confidence 3689999999999984 4456999999865
No 146
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=27.13 E-value=21 Score=16.75 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=7.4
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 3 ~~C~~C~k~F 12 (33)
T 1rim_A 3 FACPECPKRF 12 (33)
T ss_dssp CCCSSSCCCC
T ss_pred ccCCCCCchh
Confidence 4688888765
No 147
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=27.11 E-value=32 Score=20.80 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=15.8
Q ss_pred EEcCcCcEEccCCEEEEecCCC
Q 031164 15 TVKSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
.++|....++.||.+++.++..
T Consensus 64 ~~~~~~~~l~~Gd~~~ip~~~~ 85 (102)
T 3d82_A 64 AFRDQNITLQAGEMYVIPKGVE 85 (102)
T ss_dssp ECSSCEEEEETTEEEEECTTCC
T ss_pred EECCEEEEEcCCCEEEECCCCe
Confidence 3455556788899999988763
No 148
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=26.94 E-value=52 Score=21.71 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=15.8
Q ss_pred EEcCcCcEEccCCEEEEecCCC
Q 031164 15 TVKSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
.++|....++.||.+++.++..
T Consensus 52 ~i~~~~~~l~~Gd~~~i~p~~~ 73 (164)
T 2arc_A 52 KNQGREFVCRPGDILLFPPGEI 73 (164)
T ss_dssp EETTEEEEECTTCEEEECTTCC
T ss_pred EECCEEEEecCCeEEEEcCCCC
Confidence 4455545678899999988763
No 149
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=26.34 E-value=44 Score=24.26 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.4
Q ss_pred EEEcCcCcEEccCCEEEEecCCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
++++|....++.||.+++.+..+
T Consensus 70 ~~i~~~~~~l~~Gd~~~~p~~~~ 92 (227)
T 3rns_A 70 IFIENNKKTISNGDFLEITANHN 92 (227)
T ss_dssp EEESSCEEEEETTEEEEECSSCC
T ss_pred EEECCEEEEECCCCEEEECCCCC
Confidence 45677667899999999998763
No 150
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=26.32 E-value=37 Score=22.21 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=14.3
Q ss_pred EEcCcCcEEccCCEEEEecCC
Q 031164 15 TVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
+++|....++.||++++.+..
T Consensus 92 ~i~~~~~~l~~Gd~i~i~~~~ 112 (133)
T 1o4t_A 92 HDNGKDVPIKAGDVCFTDSGE 112 (133)
T ss_dssp EETTEEEEEETTEEEEECTTC
T ss_pred EECCEEEEeCCCcEEEECCCC
Confidence 345544567888888888765
No 151
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.31 E-value=18 Score=17.43 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=8.5
Q ss_pred ceEeCCccCCCC
Q 031164 153 LMVQCEGCSDWS 164 (164)
Q Consensus 153 ~~~~C~~C~~~~ 164 (164)
.-..|+.|++.|
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elm_A 8 HLYYCSQCHYSS 19 (37)
T ss_dssp CEEECSSSSCEE
T ss_pred cCeECCCCCccc
Confidence 346799998754
No 152
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.19 E-value=19 Score=17.09 Aligned_cols=12 Identities=17% Similarity=0.312 Sum_probs=8.5
Q ss_pred ceEeCCccCCCC
Q 031164 153 LMVQCEGCSDWS 164 (164)
Q Consensus 153 ~~~~C~~C~~~~ 164 (164)
....|+.|++.|
T Consensus 8 k~~~C~~C~k~f 19 (36)
T 2elq_A 8 KPFKCSLCEYAT 19 (36)
T ss_dssp CSEECSSSSCEE
T ss_pred CCccCCCCCchh
Confidence 346888888754
No 153
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.79 E-value=23 Score=16.67 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=8.6
Q ss_pred ceEeCCccCCCC
Q 031164 153 LMVQCEGCSDWS 164 (164)
Q Consensus 153 ~~~~C~~C~~~~ 164 (164)
....|+.|++.|
T Consensus 8 k~~~C~~C~k~f 19 (36)
T 2els_A 8 KIFTCEYCNKVF 19 (36)
T ss_dssp CCEECTTTCCEE
T ss_pred CCEECCCCCcee
Confidence 356899998754
No 154
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=25.72 E-value=82 Score=19.61 Aligned_cols=28 Identities=32% Similarity=0.159 Sum_probs=23.2
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEee
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (164)
.+++||.++..-..+ ...|=|+|.++..
T Consensus 10 ~~kvGd~C~A~ys~D-g~wYrA~I~~i~~ 37 (88)
T 1g5v_A 10 QWKVGDKCSAIWSED-GCIYPATIASIDF 37 (88)
T ss_dssp CCCSSCEEEEECTTT-CCEEEEEEEEEET
T ss_pred CCCCCCEEEEEECCC-CCEEEEEEEEecC
Confidence 679999999987543 6889999999965
No 155
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=25.54 E-value=73 Score=22.13 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=23.7
Q ss_pred cEEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 21 KTIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
..|+.||-|.|.++.+ .--.|+|..+...
T Consensus 47 ~~IkKGD~V~Vi~Gkd--KGk~GkVl~V~~k 75 (150)
T 3iz5_Y 47 IPIRKDDEVQVVRGSY--KGREGKVVQVYRR 75 (150)
T ss_dssp EECCSSSEEEECSSTT--TTCEEEEEEEETT
T ss_pred cccCCCCEEEEeecCC--CCccceEEEEEcC
Confidence 3689999999999984 4457999999865
No 156
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=25.51 E-value=1.1e+02 Score=18.23 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=22.7
Q ss_pred CCCeEEEEeEEeecCCCCeEEEEEEEeeccc
Q 031164 38 KPSYVAKIERIESDARGANVKVHVRWYYRPE 68 (164)
Q Consensus 38 ~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~ 68 (164)
+.+-|-+|+.-....+|. ....|.|---|.
T Consensus 20 e~yeVE~Il~~r~~~~g~-~~YlVkWkGy~~ 49 (75)
T 2rsn_A 20 DVYEVEDILADRVNKNGI-NEYYIKWAGYDW 49 (75)
T ss_dssp GCEEEEEEEEEEECSSSC-EEEEEEEESSCG
T ss_pred ceEEEEEEEEEEEcCCCc-EEEEEEECCCCC
Confidence 456688888887777788 889999965543
No 157
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=25.40 E-value=1.1e+02 Score=21.25 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=30.9
Q ss_pred cEEccCCEEEEecCCC--CCCCeEEEEeEEeecCCCCeEEEEEEEeec
Q 031164 21 KTIKPGDCVLMRPSEP--SKPSYVAKIERIESDARGANVKVHVRWYYR 66 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~~--~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyr 66 (164)
..+++||.|.-..-+. +....||+|.++..+..+....+.+.=+..
T Consensus 107 ~~i~~GD~vvTSGl~g~fP~GipVG~V~~v~~~~~~~~~~i~v~p~ad 154 (172)
T 2qf4_A 107 SDISAGDKVTTGGLGNFNVADIPVGEVVATTHSTDYLTREVTVKLSAD 154 (172)
T ss_dssp CCCCTTCEEEEECCSSSCCEEEEEEEEEEEESTTCSSCCEEEEEESCC
T ss_pred CCCCCCCEEEECCCCCcCCCCCEEEEEEEEecCCCCcEEEEEEEECCC
Confidence 3689999888765432 245579999999988665435555554433
No 158
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=25.25 E-value=1.2e+02 Score=18.44 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCCeEEEEeEEeecCCCCeEEEEEEEee
Q 031164 38 KPSYVAKIERIESDARGANVKVHVRWYY 65 (164)
Q Consensus 38 ~~~~i~~I~~i~~~~~g~~~~v~v~Wfy 65 (164)
+.+-|-+|+.-....+|. ....|.|--
T Consensus 22 e~yeVE~Ild~R~~~~g~-~~YlVKWkG 48 (81)
T 4hae_A 22 DLYEVERIVDKRKNKKGK-WEYLIRWKG 48 (81)
T ss_dssp CEEEEEEEEEEEECTTSC-EEEEEEETT
T ss_pred CEEEEEEEEEeEECCCCe-EEEEEEECC
Confidence 566788888887777788 889999953
No 159
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=25.08 E-value=60 Score=22.55 Aligned_cols=17 Identities=6% Similarity=0.161 Sum_probs=12.7
Q ss_pred cCcEEccCCEEEEecCC
Q 031164 19 ISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 19 ~~~~~~vGD~V~v~~~~ 35 (164)
....++.||++++.+..
T Consensus 162 ~~~~l~~GD~~~~~~~~ 178 (198)
T 2bnm_A 162 KEALLPTGASMFVEEHV 178 (198)
T ss_dssp EEEEECTTCEEEECTTC
T ss_pred ccEEECCCCEEEeCCCC
Confidence 44567888888887765
No 160
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.82 E-value=20 Score=15.58 Aligned_cols=9 Identities=22% Similarity=0.892 Sum_probs=6.4
Q ss_pred EeCCccCCC
Q 031164 155 VQCEGCSDW 163 (164)
Q Consensus 155 ~~C~~C~~~ 163 (164)
..|+.|++.
T Consensus 3 ~~C~~C~k~ 11 (29)
T 2m0f_A 3 LKCRECGKQ 11 (29)
T ss_dssp EECTTTSCE
T ss_pred ccCCCCCCc
Confidence 468888764
No 161
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=24.74 E-value=51 Score=20.09 Aligned_cols=22 Identities=5% Similarity=0.048 Sum_probs=14.4
Q ss_pred EEEcC--cCcEEccCCEEEEecCC
Q 031164 14 YTVKS--ISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g--~~~~~~vGD~V~v~~~~ 35 (164)
+++++ ...+++.||++++.++.
T Consensus 52 ~~~~~g~~~~~l~~Gd~~~~p~~~ 75 (97)
T 2fqp_A 52 LETPEGSVTSQLTRGVSYTRPEGV 75 (97)
T ss_dssp EEETTEEEEEEECTTCCEEECTTC
T ss_pred EEeCCCCEEEEEcCCCEEEeCCCC
Confidence 34444 33577888888887765
No 162
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.51 E-value=21 Score=16.71 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=7.8
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
-..|+.|++.|
T Consensus 7 ~~~C~~C~k~f 17 (35)
T 1srk_A 7 PFVCRICLSAF 17 (35)
T ss_dssp CEECSSSCCEE
T ss_pred CeeCCCCCccc
Confidence 46788888754
No 163
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=24.35 E-value=1.5e+02 Score=19.33 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=24.8
Q ss_pred CcCcEEccCCEEEEecCCCC--CCCeEEEEeEEeecC
Q 031164 18 SISKTIKPGDCVLMRPSEPS--KPSYVAKIERIESDA 52 (164)
Q Consensus 18 g~~~~~~vGD~V~v~~~~~~--~~~~i~~I~~i~~~~ 52 (164)
|....|.+|+-|++.-+++. ...|-|+|+++....
T Consensus 15 ~~~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~ 51 (110)
T 3m9p_A 15 GMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGK 51 (110)
T ss_dssp ---CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEE
T ss_pred CCCCcccCCCEEEEEcCCCCCCCCceeeEEEEEEecc
Confidence 33357899999999966521 356899999998754
No 164
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.30 E-value=14 Score=16.32 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=6.3
Q ss_pred EeCCccCCC
Q 031164 155 VQCEGCSDW 163 (164)
Q Consensus 155 ~~C~~C~~~ 163 (164)
..|+.|++.
T Consensus 4 ~~C~~C~k~ 12 (27)
T 2kvg_A 4 YRCPLCRAG 12 (27)
T ss_dssp EEETTTTEE
T ss_pred cCCCCCCcc
Confidence 468888764
No 165
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=23.96 E-value=85 Score=21.37 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=23.2
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
.|+.||-|.|-++.+ .--.|+|..+...
T Consensus 48 ~IkkgD~V~Vi~Gkd--KGk~GkV~~V~~k 75 (135)
T 4a17_S 48 PVRKDDEVLIVRGKF--KGNKGKVTQVYRK 75 (135)
T ss_dssp ECCTTCEEEECSSTT--TTCEEEEEEEETT
T ss_pred cccCCCEEEEeecCC--CCceeeEEEEEcC
Confidence 589999999999984 4456999999865
No 166
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.84 E-value=26 Score=16.39 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=8.2
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
...|+.|.+.|
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elr_A 9 THLCDMCGKKF 19 (36)
T ss_dssp SCBCTTTCCBC
T ss_pred CeecCcCCCCc
Confidence 46788898765
No 167
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=23.71 E-value=44 Score=20.48 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=13.2
Q ss_pred CcCcEEccCCEEEEecCC
Q 031164 18 SISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 18 g~~~~~~vGD~V~v~~~~ 35 (164)
|....++.||.+++.++.
T Consensus 73 ~~~~~l~~Gd~~~ip~~~ 90 (110)
T 2q30_A 73 DAVIPAPRGAVLVAPIST 90 (110)
T ss_dssp GCEEEECTTEEEEEETTS
T ss_pred CEEEEECCCCEEEeCCCC
Confidence 344567888888888776
No 168
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=23.59 E-value=47 Score=24.60 Aligned_cols=23 Identities=9% Similarity=0.158 Sum_probs=17.5
Q ss_pred EEEcCcCcEEccCCEEEEecCCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
++++|....++.||++++.++.+
T Consensus 94 ~~~~~~~~~L~~Gd~~~~~~~~~ 116 (261)
T 1rc6_A 94 AKAEGKTFALSEGGYLYCPPGSL 116 (261)
T ss_dssp EEETTEEEEEETTEEEEECTTCC
T ss_pred EEECCEEEEECCCCEEEECCCCC
Confidence 45566656789999999998764
No 169
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=23.58 E-value=1.1e+02 Score=21.37 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=34.0
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEeecCCCCeEEEEEEEeecccc
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIESDARGANVKVHVRWYYRPEE 69 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~v~v~Wfyrp~e 69 (164)
.+.+||.|.|..+. -.-+.|.|.++..++ +. ..|.+..|-|.-.
T Consensus 127 ~~~~Gd~V~V~~GP--f~g~~G~v~~v~~~k-~r-~~V~v~ifgr~t~ 170 (181)
T 2jvv_A 127 LFEPGEMVRVNDGP--FADFNGVVEEVDYEK-SR-LKVSVSIFGRATP 170 (181)
T ss_dssp CCCTTEEEEECSST--TTTEEEEEEEEETTT-TE-EEEEEEETTEEEE
T ss_pred cCCCCCEEEEeccC--CCCcEEEEEEEeCCC-CE-EEEEEEECCCCEE
Confidence 56799999999887 478999999997653 34 7778887776543
No 170
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.58 E-value=43 Score=20.47 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=14.4
Q ss_pred ccCCCCceEE-eeCCCCCCCCceEeCCccC
Q 031164 133 FNPDRVAVYC-KCEMPYNPDDLMVQCEGCS 161 (164)
Q Consensus 133 f~p~~~~~~C-~c~~~~~pD~~~~~C~~C~ 161 (164)
+.|+.....| .|.+++..-..-+.|..|+
T Consensus 8 W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG 37 (84)
T 1x4u_A 8 RYPTNNFGNCTGCSATFSVLKKRRSCSNCG 37 (84)
T ss_dssp SCSCCCCSSCSSSCCCCCSSSCCEECSSSC
T ss_pred cccCCCCCcCcCcCCccccchhhhhhcCCC
Confidence 4454444455 3666655444444444444
No 171
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=23.46 E-value=16 Score=23.78 Aligned_cols=14 Identities=14% Similarity=0.560 Sum_probs=11.5
Q ss_pred CCceEeCCccCCCC
Q 031164 151 DDLMVQCEGCSDWS 164 (164)
Q Consensus 151 D~~~~~C~~C~~~~ 164 (164)
+..+++|+.|..||
T Consensus 72 ~~~m~~C~~C~~~~ 85 (117)
T 4bbq_A 72 EKKLMECCICNEIV 85 (117)
T ss_dssp GGSCEEETTTCCEE
T ss_pred CcceEEeeecCCeE
Confidence 34689999999986
No 172
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=23.37 E-value=61 Score=22.13 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=14.8
Q ss_pred EEcCcCcEEccCCEEEEecC
Q 031164 15 TVKSISKTIKPGDCVLMRPS 34 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~ 34 (164)
.+++....++.||++++.+.
T Consensus 79 ~~~~~~~~l~~GD~i~ip~~ 98 (163)
T 3i7d_A 79 VDDQGEHPMVPGDCAAFPAG 98 (163)
T ss_dssp EETTEEEEECTTCEEEECTT
T ss_pred EECCEEEEeCCCCEEEECCC
Confidence 34454456789999999887
No 173
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.76 E-value=23 Score=16.39 Aligned_cols=11 Identities=18% Similarity=0.142 Sum_probs=7.7
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
-..|+.|++.|
T Consensus 7 ~~~C~~C~k~f 17 (35)
T 2elx_A 7 GYVCALCLKKF 17 (35)
T ss_dssp SEECSSSCCEE
T ss_pred CeECCCCcchh
Confidence 36788888753
No 174
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.76 E-value=30 Score=16.14 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=8.4
Q ss_pred ceEeCCccCCCC
Q 031164 153 LMVQCEGCSDWS 164 (164)
Q Consensus 153 ~~~~C~~C~~~~ 164 (164)
....|+.|++.|
T Consensus 8 k~~~C~~C~k~f 19 (36)
T 2elt_A 8 KPYKCPQCSYAS 19 (36)
T ss_dssp CSEECSSSSCEE
T ss_pred CCCCCCCCCccc
Confidence 346788888754
No 175
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.65 E-value=17 Score=17.30 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=7.8
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
-..|+.|++.|
T Consensus 9 ~~~C~~C~k~f 19 (37)
T 2elo_A 9 SYSCPVCEKSF 19 (37)
T ss_dssp CCEETTTTEEC
T ss_pred CcCCCCCCCcc
Confidence 36788888754
No 176
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=22.37 E-value=1.1e+02 Score=20.64 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=19.0
Q ss_pred EEccCCEEEEecCCCCCCCeEEEEeEEee
Q 031164 22 TIKPGDCVLMRPSEPSKPSYVAKIERIES 50 (164)
Q Consensus 22 ~~~vGD~V~v~~~~~~~~~~i~~I~~i~~ 50 (164)
.+++||.|++..+.. ......+|.+|..
T Consensus 91 ~l~~GD~v~~~~~~~-~~~~~~~V~~v~~ 118 (145)
T 1at0_A 91 RIEEKNQVLVRDVET-GELRPQRVVKVGS 118 (145)
T ss_dssp GCCTTCEEEEECTTT-CCEEEEEEEEEEE
T ss_pred HCcCCCEEEEecCCC-CCEEEEEEEEEEE
Confidence 578999999997632 2355566666653
No 177
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.29 E-value=38 Score=20.77 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=17.0
Q ss_pred ccCCCCceEE-eeCCCCCCCCceEeCCccCC
Q 031164 133 FNPDRVAVYC-KCEMPYNPDDLMVQCEGCSD 162 (164)
Q Consensus 133 f~p~~~~~~C-~c~~~~~pD~~~~~C~~C~~ 162 (164)
+.|+.....| .|.++++.=..-+.|..|++
T Consensus 15 W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~ 45 (84)
T 1z2q_A 15 WQEDEDAPACNGCGCVFTTTVRRHHCRNCGY 45 (84)
T ss_dssp CCCTTTCCBCTTTCCBCCTTSCCEECTTTCC
T ss_pred cccCCCCCCCcCcCCccccchhcccccCCCc
Confidence 4454445566 47777665555555555554
No 178
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.13 E-value=26 Score=16.55 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=7.9
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
-..|+.|++.|
T Consensus 11 ~~~C~~C~k~f 21 (37)
T 1p7a_A 11 PFQCPDCDRSF 21 (37)
T ss_dssp SBCCTTTCCCB
T ss_pred CccCCCCCccc
Confidence 46788888754
No 179
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=21.95 E-value=81 Score=17.26 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred EccCCEEEEecCCCCCCCeEEEEeEEeec
Q 031164 23 IKPGDCVLMRPSEPSKPSYVAKIERIESD 51 (164)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~i~~I~~i~~~ 51 (164)
+++||.++..-.++ ...|=|+|.++..+
T Consensus 2 wk~G~~c~A~~s~D-g~wYrA~I~~i~~~ 29 (54)
T 3s6w_A 2 WKPGDECFALYWED-NKFYRAEVEALHSS 29 (54)
T ss_dssp CCTTCEEEEEETTT-TEEEEEEEEEC--C
T ss_pred CCCCCEEEEEECCC-CCEEEEEEEEEeCC
Confidence 57899998885432 57889999998753
No 180
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=21.94 E-value=46 Score=20.24 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=10.3
Q ss_pred EccCCEEEEecC
Q 031164 23 IKPGDCVLMRPS 34 (164)
Q Consensus 23 ~~vGD~V~v~~~ 34 (164)
.++||+|+|..+
T Consensus 36 ~~vGD~VLVH~G 47 (75)
T 2z1c_A 36 TKPGDWVIVHTG 47 (75)
T ss_dssp CCTTCEEEEETT
T ss_pred CCCCCEEEEecc
Confidence 589999999865
No 181
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.78 E-value=69 Score=20.96 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=11.5
Q ss_pred EEccCCEEEEecCC
Q 031164 22 TIKPGDCVLMRPSE 35 (164)
Q Consensus 22 ~~~vGD~V~v~~~~ 35 (164)
.|+.||.|+|...+
T Consensus 53 wI~~GD~VlVe~~~ 66 (111)
T 2dgy_A 53 WIKRGDFLIVDPIE 66 (111)
T ss_dssp CCCSSCEEEEEECS
T ss_pred EEcCCCEEEEEecc
Confidence 47889999998765
No 182
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.68 E-value=25 Score=16.54 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=7.9
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
...|+.|++.|
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elv_A 9 LYDCHICERKF 19 (36)
T ss_dssp CEECSSSCCEE
T ss_pred CeECCCCCCcc
Confidence 46788888753
No 183
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=21.43 E-value=78 Score=20.98 Aligned_cols=15 Identities=7% Similarity=0.164 Sum_probs=12.5
Q ss_pred cEEccCCEEEEecCC
Q 031164 21 KTIKPGDCVLMRPSE 35 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~ 35 (164)
..++.||.+++.++.
T Consensus 90 ~~l~~Gd~i~ip~g~ 104 (148)
T 2oa2_A 90 EEVFDDYAILIPAGT 104 (148)
T ss_dssp EEEETTCEEEECTTC
T ss_pred EEECCCCEEEECCCC
Confidence 678899999998776
No 184
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=21.21 E-value=22 Score=16.49 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=7.0
Q ss_pred EeCCccCCCC
Q 031164 155 VQCEGCSDWS 164 (164)
Q Consensus 155 ~~C~~C~~~~ 164 (164)
..|+.|++.|
T Consensus 3 ~~C~~C~k~f 12 (32)
T 2kfq_A 3 FACPACPKRF 12 (32)
T ss_dssp SSSSSSCTTH
T ss_pred CCCCCCCccc
Confidence 4688888753
No 185
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=21.09 E-value=48 Score=21.36 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=15.0
Q ss_pred EEcCcCcEEccCCEEEEecCC
Q 031164 15 TVKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 15 ~i~g~~~~~~vGD~V~v~~~~ 35 (164)
.+++....++.||.+++.++.
T Consensus 82 ~i~~~~~~l~~Gd~i~ip~g~ 102 (126)
T 1vj2_A 82 LKEQGEETVEEGFYIFVEPNE 102 (126)
T ss_dssp ECSSCEEEEETTEEEEECTTC
T ss_pred EECCEEEEECCCCEEEECCCC
Confidence 344544577889999988876
No 186
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.07 E-value=32 Score=17.41 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=8.4
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
-..|+.|++.|
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2eon_A 12 PYKCQVCGKAF 22 (46)
T ss_dssp SCBCSSSCCBC
T ss_pred ccCCCCCCccc
Confidence 46799998865
No 187
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=21.05 E-value=76 Score=20.44 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=17.8
Q ss_pred EccCCEEEEecCCCCCCCeEEEEeEEe
Q 031164 23 IKPGDCVLMRPSEPSKPSYVAKIERIE 49 (164)
Q Consensus 23 ~~vGD~V~v~~~~~~~~~~i~~I~~i~ 49 (164)
++.||.|.|...+- +..-=|+|...+
T Consensus 59 I~~GD~VlVe~~~y-d~~~Kg~Iv~r~ 84 (102)
T 1jt8_A 59 VREGDVVIVKPWEV-QGDQKCDIIWRY 84 (102)
T ss_dssp CCSCEEEEECCBCC-TTSEEEEEEEES
T ss_pred ecCCCEEEEEeccC-CCCceEEEEEEe
Confidence 78999999997663 223446666554
No 188
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=20.96 E-value=50 Score=21.43 Aligned_cols=20 Identities=15% Similarity=0.474 Sum_probs=14.3
Q ss_pred EcCcCcEEccCCEEEEecCC
Q 031164 16 VKSISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 16 i~g~~~~~~vGD~V~v~~~~ 35 (164)
++|....++.||.+++.++.
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~ 95 (145)
T 3ht1_A 76 DQGRTEEVGPGEAIFIPRGE 95 (145)
T ss_dssp GGTEEEEECTTCEEEECTTC
T ss_pred ECCEEEEECCCCEEEECCCC
Confidence 44444567889999988766
No 189
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.94 E-value=27 Score=16.55 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=7.8
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
-..|+.|++.|
T Consensus 9 ~~~C~~C~k~f 19 (37)
T 2elp_A 9 AMKCPYCDFYF 19 (37)
T ss_dssp CEECSSSSCEE
T ss_pred CeECCCCChhh
Confidence 46788888753
No 190
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=20.90 E-value=1.4e+02 Score=17.60 Aligned_cols=24 Identities=25% Similarity=0.630 Sum_probs=20.2
Q ss_pred CCeEEEEeEEeecCCCCeEEEEEEE
Q 031164 39 PSYVAKIERIESDARGANVKVHVRW 63 (164)
Q Consensus 39 ~~~i~~I~~i~~~~~g~~~~v~v~W 63 (164)
...|-+|..+..+.+|+ .+|-+.|
T Consensus 10 E~~Ve~I~g~~~~~~g~-L~flikw 33 (68)
T 1e0b_A 10 EDLVSSIDTIERKDDGT-LEIYLTW 33 (68)
T ss_dssp TTTEEEEEEEEECTTSC-EEEEEEE
T ss_pred hhheeEEEEEEECCCCE-EEEEEEE
Confidence 45688999998866788 9999999
No 191
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=20.73 E-value=56 Score=24.03 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=17.4
Q ss_pred EEEcCcCcEEccCCEEEEecCCC
Q 031164 14 YTVKSISKTIKPGDCVLMRPSEP 36 (164)
Q Consensus 14 ~~i~g~~~~~~vGD~V~v~~~~~ 36 (164)
++++|....++.||++++.++.+
T Consensus 81 ~~~~~~~~~l~~Gd~~~~p~~~~ 103 (246)
T 1sfn_A 81 VAVGGETRTLREYDYVYLPAGEK 103 (246)
T ss_dssp EECSSCEEEECTTEEEEECTTCC
T ss_pred EEECCEEEEECCCCEEEECCCCC
Confidence 34556656789999999998874
No 192
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.63 E-value=29 Score=16.96 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=8.1
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
-..|+.|++.|
T Consensus 11 ~~~C~~C~k~f 21 (42)
T 2ytb_A 11 PYRCDQCGKAF 21 (42)
T ss_dssp SBCCTTTTCCB
T ss_pred CeeCCCccchh
Confidence 46788888765
No 193
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=20.17 E-value=91 Score=20.74 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=16.8
Q ss_pred EEEcCcC-cEEccCCEEEEecCC
Q 031164 14 YTVKSIS-KTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g~~-~~~~vGD~V~v~~~~ 35 (164)
+.+++.. ..++.||.+++.+..
T Consensus 81 ~~~~~~~~~~l~~Gd~i~ip~~~ 103 (147)
T 2f4p_A 81 YQERGKPARILKKGDVVEIPPNV 103 (147)
T ss_dssp EEETTSCCEEEETTCEEEECTTC
T ss_pred EEECCEEEEEECCCCEEEECCCC
Confidence 3556664 678999999998876
No 194
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.07 E-value=28 Score=17.29 Aligned_cols=11 Identities=18% Similarity=0.473 Sum_probs=8.2
Q ss_pred eEeCCccCCCC
Q 031164 154 MVQCEGCSDWS 164 (164)
Q Consensus 154 ~~~C~~C~~~~ 164 (164)
...|+.|++.|
T Consensus 12 ~~~C~~C~k~f 22 (44)
T 2eof_A 12 PYECNECQKAF 22 (44)
T ss_dssp SEECTTTCCEE
T ss_pred CeECCCCCccc
Confidence 47889888754
No 195
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=20.04 E-value=90 Score=21.92 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=12.7
Q ss_pred cEEccCCEEEEecCC
Q 031164 21 KTIKPGDCVLMRPSE 35 (164)
Q Consensus 21 ~~~~vGD~V~v~~~~ 35 (164)
..++.||.|++.+..
T Consensus 121 ~~l~~GD~v~ip~g~ 135 (190)
T 1x82_A 121 ISMEPGTVVYVPPYW 135 (190)
T ss_dssp EEECTTCEEEECTTC
T ss_pred EEECCCcEEEECCCC
Confidence 578999999998876
No 196
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=20.01 E-value=58 Score=21.00 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=15.0
Q ss_pred EEEcC-cCcEEccCCEEEEecCC
Q 031164 14 YTVKS-ISKTIKPGDCVLMRPSE 35 (164)
Q Consensus 14 ~~i~g-~~~~~~vGD~V~v~~~~ 35 (164)
+.++| ....++.||.+++.++.
T Consensus 77 ~~~~~~~~~~l~~Gd~~~ip~g~ 99 (134)
T 2o8q_A 77 FEYEDIGAVMLEAGGSAFQPPGV 99 (134)
T ss_dssp EEETTTEEEEEETTCEEECCTTC
T ss_pred EEECCcEEEEecCCCEEEECCCC
Confidence 34455 44567888888888765
Done!