Query 031165
Match_columns 164
No_of_seqs 158 out of 395
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 16:07:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_U 60S ribosomal protein L 100.0 2.1E-89 7E-94 549.5 1.5 164 1-164 1-164 (164)
2 4a17_P RPL21, 60S ribosomal pr 100.0 1.3E-84 4.6E-89 518.7 13.5 156 1-157 1-156 (157)
3 3izc_U 60S ribosomal protein R 100.0 5.3E-85 1.8E-89 522.4 5.2 158 1-158 1-160 (160)
4 2zkr_q 60S ribosomal protein L 100.0 2.3E-83 7.9E-88 512.9 7.2 158 1-158 1-160 (160)
5 3jyw_Q 60S ribosomal protein L 100.0 3.5E-59 1.2E-63 356.8 0.7 108 2-109 1-108 (116)
6 3j21_R 50S ribosomal protein L 100.0 4.2E-53 1.4E-57 314.8 10.3 96 1-100 2-97 (97)
7 1vq8_Q 50S ribosomal protein L 100.0 3.3E-53 1.1E-57 314.8 8.7 96 1-100 1-96 (96)
8 2zzd_A Thiocyanate hydrolase s 68.6 3.9 0.00013 31.2 3.3 36 33-69 36-72 (126)
9 2do3_A Transcription elongatio 68.5 5.5 0.00019 27.4 3.7 57 27-99 11-67 (69)
10 3iz5_Y 60S ribosomal protein L 67.5 4.7 0.00016 31.6 3.6 84 26-123 33-132 (150)
11 3r8s_U 50S ribosomal protein L 67.2 2.8 9.7E-05 30.7 2.1 48 32-100 2-49 (102)
12 2heq_A YORP protein; SH3-like, 62.3 5.3 0.00018 28.2 2.7 34 33-70 11-44 (84)
13 1ugp_B NitrIle hydratase beta 60.2 6.3 0.00021 32.5 3.2 35 33-68 138-173 (226)
14 3qyh_B CO-type nitrIle hydrata 59.3 6.6 0.00023 32.2 3.2 35 33-68 130-165 (219)
15 3v2d_Y 50S ribosomal protein L 58.3 5.5 0.00019 29.5 2.3 48 33-100 6-53 (110)
16 3hht_B NitrIle hydratase beta 57.9 7.2 0.00024 32.2 3.2 35 33-68 141-176 (229)
17 2ftc_N Mitochondrial ribosomal 57.4 15 0.00052 26.4 4.5 43 37-99 1-43 (96)
18 2zjr_R 50S ribosomal protein L 56.1 4.3 0.00015 30.2 1.4 47 33-99 15-61 (115)
19 4fm4_B NitrIle hydratase beta 48.8 13 0.00046 30.0 3.4 36 33-69 118-154 (206)
20 2e6z_A Transcription elongatio 47.9 27 0.00094 22.4 4.2 50 33-96 7-56 (59)
21 3a8g_B NitrIle hydratase subun 47.5 13 0.00045 30.3 3.2 36 32-68 121-158 (212)
22 4a17_S RPL26, 60S ribosomal pr 43.1 14 0.00047 28.4 2.5 74 25-109 32-121 (135)
23 1nz9_A Transcription antitermi 42.8 40 0.0014 21.1 4.4 50 33-96 4-55 (58)
24 3u5e_Y L33, YL33, 60S ribosoma 40.5 30 0.001 26.2 4.0 64 34-108 50-121 (127)
25 1vq8_T 50S ribosomal protein L 39.4 18 0.00063 27.1 2.6 34 34-77 43-76 (120)
26 1hr0_W Translation initiation 39.4 11 0.00038 25.1 1.3 26 13-46 34-59 (71)
27 1ah9_A IF1, initiation factor 37.7 15 0.0005 24.4 1.6 25 13-45 33-57 (71)
28 2zkr_t 60S ribosomal protein L 33.3 26 0.00088 27.1 2.6 34 33-76 48-82 (145)
29 1ts9_A Ribonuclease P protein 32.7 99 0.0034 22.2 5.6 36 52-89 25-60 (102)
30 3p8d_A Medulloblastoma antigen 31.7 73 0.0025 21.5 4.4 54 31-101 4-58 (67)
31 1qp2_A Protein (PSAE protein); 30.7 44 0.0015 23.1 3.2 36 34-77 2-41 (70)
32 3j21_U 50S ribosomal protein L 30.2 28 0.00096 26.0 2.3 41 26-76 30-78 (121)
33 3bbo_W Ribosomal protein L24; 29.8 5.6 0.00019 32.3 -1.8 47 33-99 68-114 (191)
34 1jb0_E Photosystem 1 reaction 28.6 47 0.0016 23.2 3.0 28 35-70 2-29 (75)
35 2k52_A Uncharacterized protein 28.3 14 0.00049 24.4 0.4 24 22-45 30-57 (80)
36 3p8b_B Transcription antitermi 27.8 66 0.0023 23.7 4.0 55 32-100 90-146 (152)
37 3udc_A Small-conductance mecha 27.7 52 0.0018 26.8 3.7 30 31-75 126-155 (285)
38 2vv5_A MSCS, small-conductance 24.5 48 0.0016 27.0 2.9 28 32-74 128-155 (286)
39 2bzy_A CRK-like protein, CRKL 23.0 62 0.0021 20.2 2.7 11 34-44 22-32 (67)
40 2k9g_A SH3 domain-containing k 22.3 47 0.0016 21.0 2.0 13 33-45 27-39 (73)
41 4a6q_A Histone deacetylase com 22.2 41 0.0014 26.0 1.9 14 33-46 126-139 (143)
42 2e70_A Transcription elongatio 22.0 69 0.0024 21.9 2.9 47 36-98 20-66 (71)
43 2eqs_A ATP-dependent RNA helic 21.0 31 0.0011 24.0 1.0 15 32-46 59-73 (103)
44 2jte_A CD2-associated protein; 20.8 54 0.0019 20.1 2.0 12 34-45 25-36 (64)
45 2eyx_A V-CRK sarcoma virus CT1 20.7 61 0.0021 20.3 2.3 11 34-44 27-37 (67)
No 1
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=100.00 E-value=2.1e-89 Score=549.49 Aligned_cols=164 Identities=91% Similarity=1.436 Sum_probs=163.0
Q ss_pred CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (164)
Q Consensus 1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v 80 (164)
|++|+|+|++||||||++||+||++||+|||++|++||+|||++||||||||||+||||+||+||||||+||||+|||||
T Consensus 1 m~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~AvgV~Vnk~v 80 (164)
T 3iz5_U 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (164)
T ss_dssp CCCCCCTTSSCHHHHCCCGGGCSCCCTHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSSSEEEEEECCS
T ss_pred CCCCCCCCCCChhhhcCCccccCCCCHHHHHHHhCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCCEEEEEEEeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeeeeEEeeeeceeecccChHHHHHHHhhcHHHHHHHHHcCCceecccCCCCCcceeeecCCceeEeeeeceeEEeec
Q 031165 81 GNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDL 160 (164)
Q Consensus 81 ~~k~i~KrI~VriEHik~sk~r~~fl~rvk~nd~~k~eak~~g~~v~~kr~p~~Pr~a~~v~~~~p~~l~p~py~~~~~~ 160 (164)
+|+||+|||||+||||+||+||++||+||||||++++||||+|+||||||||+|||+||||++++||+|+|+||||++||
T Consensus 81 ~gkil~KrInVriEHik~sk~r~~Flkrvkend~kkkeakekg~~v~lKrqp~~Pr~a~~v~~~~pe~l~pipye~~~~~ 160 (164)
T 3iz5_U 81 GNRIIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKARGEVISTKRQPAGPKPGFMVEGTTIETVTPIPYDVVNDL 160 (164)
T ss_dssp SSSCCEEEEEECGGGEEECHHHHHHHHHHHHHHHHHHHTTTSCCSCSTTHHHHTTCCCCCCHHHHHHHTTTSSCSHHHHH
T ss_pred CCeeeeeEEEEeHHHcccccCHHHHHHHHHHhHHHHHHHHhcCCcccccccCCCCcceeEECCCCeEEEeceeeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCCC
Q 031165 161 KGGY 164 (164)
Q Consensus 161 ~~~~ 164 (164)
+|||
T Consensus 161 ~~~~ 164 (164)
T 3iz5_U 161 KGGY 164 (164)
T ss_dssp HHHC
T ss_pred cccC
Confidence 9997
No 2
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=100.00 E-value=1.3e-84 Score=518.71 Aligned_cols=156 Identities=42% Similarity=0.759 Sum_probs=154.0
Q ss_pred CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (164)
Q Consensus 1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v 80 (164)
|++|+|+|+|||||||++||+||++||+|||++|++||+|||++||||||||||+||||+||+||||||+|+||+||++|
T Consensus 1 M~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v 80 (157)
T 4a17_P 1 MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIV 80 (157)
T ss_dssp -CCCCCTTTTCHHHHSCCTTCTTCCCHHHHHCCCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEE
T ss_pred CCCCCCCcCCChhhhcCCccccCCCCHHHHHHHhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeeeeEEeeeeceeecccChHHHHHHHhhcHHHHHHHHHcCCceecccCCCCCcceeeecCCceeEeeeeceeEE
Q 031165 81 GNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVV 157 (164)
Q Consensus 81 ~~k~i~KrI~VriEHik~sk~r~~fl~rvk~nd~~k~eak~~g~~v~~kr~p~~Pr~a~~v~~~~p~~l~p~py~~~ 157 (164)
+|+||+|||||+||||+||+||++||+||||||++++||||+|+||||||||+|||+|||| +++||+|+|+||||+
T Consensus 81 ~gkil~KrI~VriEHik~sk~r~~flkrvkend~~kkeak~kg~~v~lKrqp~~pr~a~~v-~~~pe~l~pipye~~ 156 (157)
T 4a17_P 81 NGRYIEKRLHVKIEHVRPSNVKTALSKRYQANDQAKAEGNKAGKRVSTKRNPGQPLEAVQV-QGAVNFQHPKVFREI 156 (157)
T ss_dssp TTEEEEEEEEEEGGGEEECHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCCCC
T ss_pred CCEeeeeEEEEeHHHccccccHHHHHHHHHHhHHHHHHHHhcCCccccccCCCCCCcceEe-CCceEEEeccceEee
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999985
No 3
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=100.00 E-value=5.3e-85 Score=522.36 Aligned_cols=158 Identities=53% Similarity=0.910 Sum_probs=156.0
Q ss_pred CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (164)
Q Consensus 1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v 80 (164)
|++|+|+|+|||||||++||+||++||+|||++|++||+|||++||||||||||+||||+||+|||||++|+||+||++|
T Consensus 1 M~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v 80 (160)
T 3izc_U 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMV 80 (160)
T ss_dssp CCSCCCSSTTCHHHHCCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEECCCS
T ss_pred CCCCCCCCCCChhhhcCCccccCCCCHHHHHHHhcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeeeeEEeeeeceeecccChHHHHHHHhhcHHHHHHHHHcCCceecccCCCCCcceeee--cCCceeEeeeeceeEEe
Q 031165 81 GNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYDVVN 158 (164)
Q Consensus 81 ~~k~i~KrI~VriEHik~sk~r~~fl~rvk~nd~~k~eak~~g~~v~~kr~p~~Pr~a~~v--~~~~p~~l~p~py~~~~ 158 (164)
+|+||+|+|||+||||+||+||++||+||||||++++||||+|+||||||||+|||+|||| ++++||+|+|+||||++
T Consensus 81 ~gkil~KrI~VriEHik~sk~r~~flkrvkend~~kkeak~kg~~v~lKrqp~~pr~a~~v~t~~~~pe~l~pipye~~~ 160 (160)
T 3izc_U 81 GNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYETFI 160 (160)
T ss_dssp SSSCCCEEEEECTTSEEECHHHHHHHHHHHHHHHHHHHHHHSCCSCSTTHHHHTTCCCCCSCCSSSHHHHHTTSSCTTTC
T ss_pred CCEeeeeEEEEeHHHccccccHHHHHHHHHHhHHHHHHHHhcCCcccccccCCCCcceEEEECCCCceEEEeccceEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999 78999999999999853
No 4
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.3e-83 Score=512.89 Aligned_cols=158 Identities=48% Similarity=0.848 Sum_probs=95.9
Q ss_pred CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (164)
Q Consensus 1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v 80 (164)
|++|+|+|++||||||++||+||++|||+||++|++||+|||++||||||||||+||||+||+||||+|+||||+||++|
T Consensus 1 M~~s~G~R~~TR~~fsr~fRk~G~~plst~m~~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v 80 (160)
T 2zkr_q 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQV 80 (160)
T ss_dssp ---CCSSSTTCHHHHSCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECC
T ss_pred CCCCCCccccchHhhCCCccccCCCcHHHHHHHcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeeeeEEeeeeceeecccChHHHHHHHhhcHHHHHHHHHcCCceecccCCCCCcceeee--cCCceeEeeeeceeEEe
Q 031165 81 GNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYDVVN 158 (164)
Q Consensus 81 ~~k~i~KrI~VriEHik~sk~r~~fl~rvk~nd~~k~eak~~g~~v~~kr~p~~Pr~a~~v--~~~~p~~l~p~py~~~~ 158 (164)
+|+||+|+||||+|||++|+||++||+||||||++++|||++|+||||||||+|||+|||| ++++||+|+|+|||+++
T Consensus 81 ~~kil~Kri~vr~eHik~sk~r~~Fl~rvk~n~~~k~eak~kg~~v~lKrqp~~Pr~a~~v~~~~~~pe~~~pipy~~~~ 160 (160)
T 2zkr_q 81 KGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRHAAPPREAHFVRTNGKEPELLEPIPYEFMA 160 (160)
T ss_dssp SSCCSCEEEEECGGGEEEC-------------------------------------------------------------
T ss_pred CCeeeeeEEEcCHHHcCccccHHHHHHHHHHhHHHHHHHHhcCCEeeecccCCCCcceEEEECCCCceEEecccceEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999 78999999999999874
No 5
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q
Probab=100.00 E-value=3.5e-59 Score=356.83 Aligned_cols=108 Identities=55% Similarity=0.936 Sum_probs=105.7
Q ss_pred CCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeC
Q 031165 2 PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVG 81 (164)
Q Consensus 2 ~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~ 81 (164)
++|+|+|++||||||++||+||++||+|||++|++||+|||++||||||||||+||||+||+||||||+||||+||+||+
T Consensus 1 ~~skG~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGKTGrV~nvt~~AvgivVnkqv~ 80 (116)
T 3jyw_Q 1 GKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVG 80 (116)
T ss_dssp CCCCSSSSSCHHHHSCCSTTCSSCCSSTTTCCCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSSSSSEEEECCCS
T ss_pred CCCCCCCCCChhhhcCCccccCCCCHHHHHHHhCCCCEEEEeccCccCCCCCCcccCCCCeEEEeecCcEEEEEEEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeeeeEEeeeeceeecccChHHHHHHH
Q 031165 82 NRIIKKRIHVRVEHVQPSRCTEEFKLRK 109 (164)
Q Consensus 82 ~k~i~KrI~VriEHik~sk~r~~fl~rv 109 (164)
||||+|||||+||||+||+||++||.-.
T Consensus 81 gKil~KrInVriEHik~sk~r~~~~~~~ 108 (116)
T 3jyw_Q 81 NRYLEKRLNLRVEHIKHSKAAAAAAAAA 108 (116)
T ss_dssp SSSCCCEEEECGGGBCCCCCSGGGHHHH
T ss_pred CeeeeeEEEECHhHCccccCHHHHHHHH
Confidence 9999999999999999999999998653
No 6
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.2e-53 Score=314.81 Aligned_cols=96 Identities=31% Similarity=0.614 Sum_probs=92.7
Q ss_pred CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (164)
Q Consensus 1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v 80 (164)
|++|+|+|++||||||++||+||++||++||++|++||+|||++||||||||||+||||+||+||||||+||||+||+
T Consensus 2 m~~s~G~R~~TR~~fsr~fRk~G~~pls~~m~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn~-- 79 (97)
T 3j21_R 2 VQKAHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIKD-- 79 (97)
T ss_dssp -CCSCCSSTTCTTTSCCCTTTCSSCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEE--
T ss_pred CCCCCCCcCCChhhhcCCccccCCCcHHHHHHHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEEe--
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CcEeeeeEEeeeeceeeccc
Q 031165 81 GNRIIKKRIHVRVEHVQPSR 100 (164)
Q Consensus 81 ~~k~i~KrI~VriEHik~sk 100 (164)
+| ++|||||+||||+||+
T Consensus 80 ~g--~~Kri~vrieHik~~~ 97 (97)
T 3j21_R 80 GS--KVKTLFIHPVHLRPQK 97 (97)
T ss_dssp TT--EEEEEEECGGGEEECC
T ss_pred CC--cceEEEECHHHccccC
Confidence 78 4999999999999985
No 7
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=100.00 E-value=3.3e-53 Score=314.85 Aligned_cols=96 Identities=26% Similarity=0.363 Sum_probs=92.8
Q ss_pred CCCCCCCCcccccccCCcccCCCCCChHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeee
Q 031165 1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV 80 (164)
Q Consensus 1 m~~s~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v 80 (164)
|++|+|+|++||||||++||+||++|||+||++|++||+|||++||||||||||+||||+||+||||||+||||+||+++
T Consensus 1 m~~s~G~R~~TR~~fsr~fR~~G~~pls~~m~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk~v 80 (96)
T 1vq8_Q 1 MPSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGG 80 (96)
T ss_dssp -CCCCSTTTTCTTTTSCCGGGCSSCCSHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETT
T ss_pred CCCCCCccccchHhhCCCccccCCCCHHHHHHHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEeecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcEeeeeEEeeeeceeeccc
Q 031165 81 GNRIIKKRIHVRVEHVQPSR 100 (164)
Q Consensus 81 ~~k~i~KrI~VriEHik~sk 100 (164)
++ |+||||||||++|+
T Consensus 81 k~----Kri~vr~eHik~sk 96 (96)
T 1vq8_Q 81 KE----KTIIVTAAHLRRQE 96 (96)
T ss_dssp EE----EEEEECGGGEEECC
T ss_pred CC----cEEEeCHhHcccCC
Confidence 76 69999999999985
No 8
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=68.58 E-value=3.9 Score=31.19 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=26.5
Q ss_pred hhCCCCEEEEEec-CceeeCccCccccccceeEEeeec
Q 031165 33 TYKIGDYVDVKVN-GAVHKGMPHKFYHGRTGRVWNVTK 69 (164)
Q Consensus 33 ~yk~GD~VdIk~~-~svqKGmPhk~YHGkTG~V~~v~~ 69 (164)
.|++||.|-++-. +.-|--|| .+=-|+||+|.-+.+
T Consensus 36 rF~vGDrVrvr~~~p~gHtRlP-~YvRGk~G~I~~~~G 72 (126)
T 2zzd_A 36 KFNVGDRVRIKDLPDLFYTRTM-TYTRGATGTIVRLVY 72 (126)
T ss_dssp SSCTTCEEEECCCCCSSCCSSC-GGGTTCEEEEEEEEE
T ss_pred ccCCCCEEEEccCCCCCceecc-HHhCCCEEEEEEEec
Confidence 5999999999843 44555666 456799999876653
No 9
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=68.54 E-value=5.5 Score=27.45 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=40.7
Q ss_pred hHHHHHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeecc
Q 031165 27 LSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPS 99 (164)
Q Consensus 27 ls~~l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~s 99 (164)
.+..=..|++||-|-+. +-+|.|.||-|+.|.+.-+.|. .++ . .+.|.|.+..|..+
T Consensus 11 ~~~LrK~F~~GDHVkVi----------~G~~~getGlVV~v~~d~v~v~-SD~--t---~~Ei~V~~~dL~~~ 67 (69)
T 2do3_A 11 AQELRKYFKMGDHVKVI----------AGRFEGDTGLIVRVEENFVILF-SDL--T---MHELKVLPRDLQLC 67 (69)
T ss_dssp CCCCCSSCCTTCEEEES----------SSTTTTCEEEEEEECSSCEEEE-ESS--S---CSEEEECTTSEEES
T ss_pred HHHceeeccCCCeEEEe----------ccEEcCceEEEEEEeCCEEEEE-eCC--C---CCEEEEEhHHhhhh
Confidence 33444569999999773 2379999999999998866654 432 2 36788888777654
No 10
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=67.53 E-value=4.7 Score=31.57 Aligned_cols=84 Identities=31% Similarity=0.409 Sum_probs=49.3
Q ss_pred ChHHHHH--------hhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEE-----eeeCcEeeeeEE---
Q 031165 26 PLSTYLR--------TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN-----KQVGNRIIKKRI--- 89 (164)
Q Consensus 26 ~ls~~l~--------~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vn-----k~v~~k~i~KrI--- 89 (164)
|||.=|+ ..+.||.|-|. -| .|-|++|.|..|.....-|+|. +.-| ...+--|
T Consensus 33 ~LSkELR~ky~vRs~~IkKGD~V~Vi-~G---------kdKGk~GkVl~V~~kk~~V~VEGVN~~K~~G-~~~eapIh~S 101 (150)
T 3iz5_Y 33 ALSTELRHKYNVRSIPIRKDDEVQVV-RG---------SYKGREGKVVQVYRRRWVIHVERITREKVNG-STVNVGIHPS 101 (150)
T ss_dssp EECHHHHTTTTCSEEECCSSSEEEEC-SS---------TTTTCEEEEEEEETTTTEEEETTCEEECTTS-CEEECCBCGG
T ss_pred cCCHHHHHHhCCcccccCCCCEEEEe-ec---------CCCCccceEEEEEcCCCEEEEeCcEEEeCCC-CEEecccchH
Confidence 5666565 45789999664 33 4789999999998765445442 2222 2222222
Q ss_pred eeeeceeecccChHHHHHHHhhcHHHHHHHHHcC
Q 031165 90 HVRVEHVQPSRCTEEFKLRKKKNDELKADAKARG 123 (164)
Q Consensus 90 ~VriEHik~sk~r~~fl~rvk~nd~~k~eak~~g 123 (164)
||-+--++--+.|.+.|+|-....+. .+++|
T Consensus 102 NV~i~~~k~dk~R~~~lerk~~~~~~---~~~k~ 132 (150)
T 3iz5_Y 102 KVVVTKLKLDKDRKAILDRKASGRAA---DKAKG 132 (150)
T ss_dssp GEEEEECCCCSHHHHHHHHHHHHHHH---HHC--
T ss_pred HEEEEcccCChHHHHHhccchhhhhh---ccccc
Confidence 45555555567788888886554333 34455
No 11
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=67.25 E-value=2.8 Score=30.66 Aligned_cols=48 Identities=27% Similarity=0.296 Sum_probs=33.8
Q ss_pred HhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeeccc
Q 031165 32 RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR 100 (164)
Q Consensus 32 ~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~sk 100 (164)
.-.+.||.|-|. -| .+-|++|.|..|... .-|+| .-||+.--|.+++.
T Consensus 2 ~~IkkGD~V~Vi-~G---------kdKGk~GkV~~V~~~-~~ViV----------eGvN~~kkh~kp~~ 49 (102)
T 3r8s_U 2 AKIRRDDEVIVL-TG---------KDKGKRGKVKNVLSS-GKVIV----------EGINLVKKHQKPVP 49 (102)
T ss_dssp CSSCSSCEEEEC-SS---------SSTTCEEEEEEEETT-TEEEE----------TTCSEEEEEECCCS
T ss_pred CCccCCCEEEEe-Ec---------CCCCeeeEEEEEEeC-CEEEE----------eCeEEEEeccccCc
Confidence 356899999764 23 377999999888776 55554 34666677888763
No 12
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=62.27 E-value=5.3 Score=28.23 Aligned_cols=34 Identities=29% Similarity=0.606 Sum_probs=27.0
Q ss_pred hhCCCCEEEEEecCceeeCccCccccccceeEEeeecc
Q 031165 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKR 70 (164)
Q Consensus 33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~ 70 (164)
.|..||.|.| |....-||||. -|+-|.|...-..
T Consensus 11 sYp~gl~VeI--N~NAkygcPhh--VGrkGkIie~~hS 44 (84)
T 2heq_A 11 SYPVGLAVEI--NNNARYGCPHH--VGRKGKIIEHLHS 44 (84)
T ss_dssp CSCTTCEEEE--CTTCTTTSTTC--CSSEEEEEEECCC
T ss_pred ccCCCCEEEE--cCCcccCCccc--cccccchhhhhhh
Confidence 5899999998 77778899984 6998988765443
No 13
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=60.17 E-value=6.3 Score=32.48 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=25.6
Q ss_pred hhCCCCEEEEEec-CceeeCccCccccccceeEEeee
Q 031165 33 TYKIGDYVDVKVN-GAVHKGMPHKFYHGRTGRVWNVT 68 (164)
Q Consensus 33 ~yk~GD~VdIk~~-~svqKGmPhk~YHGkTG~V~~v~ 68 (164)
.|++||.|-++-. +.-|--+| .+=-|+||+|.-+.
T Consensus 138 ~F~vGd~Vrv~~~~~~~HtR~P-~Y~Rgk~G~I~~~~ 173 (226)
T 1ugp_B 138 KFKEGDVVRFSTASPKGHARRA-RYVRGKTGTVVKHH 173 (226)
T ss_dssp SCCTTCEEEECCCCCSSCCCCC-GGGTTCEEEEEEEE
T ss_pred cCCCCCeEEEccCCCCCccccc-HHhCCCeEEEEEEe
Confidence 4999999999844 34455565 45679999988665
No 14
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=59.25 E-value=6.6 Score=32.22 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=26.1
Q ss_pred hhCCCCEEEEEe-cCceeeCccCccccccceeEEeee
Q 031165 33 TYKIGDYVDVKV-NGAVHKGMPHKFYHGRTGRVWNVT 68 (164)
Q Consensus 33 ~yk~GD~VdIk~-~~svqKGmPhk~YHGkTG~V~~v~ 68 (164)
.|++||.|-++- ++.-|--+| .+-.|+||+|.-+.
T Consensus 130 ~F~vGd~Vrv~~~~~~~HtR~P-~Y~RG~~G~I~~~~ 165 (219)
T 3qyh_B 130 RFAVGDKVRVLNKNPVGHTRMP-RYTRGKVGTVVIDH 165 (219)
T ss_dssp CCCTTCEEEECCCCCSSCCCSC-GGGTTCEEEEEEEE
T ss_pred CCCCCCEEEECCCCCCCccccc-HHHCCCeeEEEEEe
Confidence 499999999964 444555666 45689999997664
No 15
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=58.28 E-value=5.5 Score=29.48 Aligned_cols=48 Identities=31% Similarity=0.429 Sum_probs=33.5
Q ss_pred hhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeeccc
Q 031165 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSR 100 (164)
Q Consensus 33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~sk 100 (164)
..+.||.|-|. -| .+-|++|.|..|.....-|+| .-||+.--|++|+.
T Consensus 6 ~IkkGD~V~Vi-~G---------kdKGk~GkV~~V~~~~~~ViV----------EGvN~~kkh~kp~~ 53 (110)
T 3v2d_Y 6 HVKKGDTVLVA-SG---------KYKGRVGKVKEVLPKKYAVIV----------EGVNIVKKAVRVSP 53 (110)
T ss_dssp SCCTTSEEEEC-SS---------TTTTCEEEEEEEEGGGTEEEE----------TTSSEEEEECCSSS
T ss_pred ccCCCCEEEEe-Ec---------CCCCeEeEEEEEECCCCEEEE----------eCEEEEEEEeCCCc
Confidence 35789999764 23 377999999887765444444 44667777888864
No 16
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=57.91 E-value=7.2 Score=32.23 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=26.3
Q ss_pred hhCCCCEEEEEe-cCceeeCccCccccccceeEEeee
Q 031165 33 TYKIGDYVDVKV-NGAVHKGMPHKFYHGRTGRVWNVT 68 (164)
Q Consensus 33 ~yk~GD~VdIk~-~~svqKGmPhk~YHGkTG~V~~v~ 68 (164)
.|++||.|-++- ++.-|--+| .+-.|+||+|.-+.
T Consensus 141 ~F~vGd~Vrv~~~~~~~HtR~P-~Y~RG~~G~I~~~~ 176 (229)
T 3hht_B 141 RFKVGERIKTKNIHPTGHTRFP-RYARDKYGVIDEVY 176 (229)
T ss_dssp SCCTTCEEEECCCCCSSCCSCC-GGGTTCEEEEEEEE
T ss_pred CCCCCCEEEECCCCCCCcccCc-HHHCCCeeEEEEEe
Confidence 599999999964 444566666 45689999997764
No 17
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=57.41 E-value=15 Score=26.37 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=29.9
Q ss_pred CCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeecc
Q 031165 37 GDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPS 99 (164)
Q Consensus 37 GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~s 99 (164)
||.|-|.- | .+-|++|.|..|.....-|+| ..+|+.-.|++++
T Consensus 1 GD~V~Vi~-G---------kdKGk~GkV~~V~~~~~~ViV----------eGvN~~kkh~kp~ 43 (96)
T 2ftc_N 1 GDTVEILE-G---------KDAGKQGKVVQVIRQRNWVVV----------GGLNTHYRYIGKT 43 (96)
T ss_pred CCEEEEeE-c---------CCCCcEEEEEEEECCCCEEEE----------eCCEEEEEEcCCC
Confidence 78877642 2 267999999887765544444 5577778888886
No 18
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=56.12 E-value=4.3 Score=30.18 Aligned_cols=47 Identities=34% Similarity=0.416 Sum_probs=33.2
Q ss_pred hhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeecc
Q 031165 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPS 99 (164)
Q Consensus 33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~s 99 (164)
.++.||.|-|.- | .+-|++|.|..|....-.|+ ..-||+.--|++++
T Consensus 15 ~IkkGD~V~Vi~-G---------kdKGk~GkV~~V~~~~~~V~----------VEGvN~~kkh~kp~ 61 (115)
T 2zjr_R 15 HFKKGDTVIVLS-G---------KHKGQTGKVLLALPRDQKVV----------VEGVNVITKNVKPS 61 (115)
T ss_dssp SSCTTSEEECCS-S---------SSTTCEEEEEEEETTTTEEE----------ESSSCBCCCCCCTT
T ss_pred cccCCCEEEEeE-c---------CCCCcEEEEEEEECCCCEEE----------EeCcEeEEEecCCC
Confidence 588999998852 2 26799999988875543443 44567777788876
No 19
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=48.84 E-value=13 Score=30.04 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=24.4
Q ss_pred hhCCCCEEEEEec-CceeeCccCccccccceeEEeeec
Q 031165 33 TYKIGDYVDVKVN-GAVHKGMPHKFYHGRTGRVWNVTK 69 (164)
Q Consensus 33 ~yk~GD~VdIk~~-~svqKGmPhk~YHGkTG~V~~v~~ 69 (164)
.|++||.|-++-. +.=|--+| .+=-|+||+|..+.+
T Consensus 118 ~F~vGd~Vrv~~~~~~gHtRlP-~Y~rg~~G~I~~~~g 154 (206)
T 4fm4_B 118 GFKLGQRVHVKNEFVPGHTRFP-AYIRGKAGVVVGISP 154 (206)
T ss_dssp CCCTTCEEEECCCCCSSCCSSC-GGGTTCEEEEEEECC
T ss_pred CCcCCCEEEeCCCCCCCccccc-HhhcCCeeEEEEEec
Confidence 3999999999743 22333344 345688888887654
No 20
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.93 E-value=27 Score=22.44 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=33.7
Q ss_pred hhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeecee
Q 031165 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHV 96 (164)
Q Consensus 33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHi 96 (164)
.|.+||.|-|. +| | |.|-+|+|..+.+.-+.|.|. ..|+ ...+.+....|
T Consensus 7 ~f~~GD~V~V~-~G------p---f~g~~G~V~evd~e~v~V~v~--~fg~--~tpvel~~~qv 56 (59)
T 2e6z_A 7 GFQPGDNVEVC-EG------E---LINLQGKILSVDGNKITIMPK--HEDL--KDMLEFPAQEL 56 (59)
T ss_dssp SCCTTSEEEEC-SS------T---TTTCEEEECCCBTTEEEEEEC--CSSC--CSCEEEETTTE
T ss_pred cCCCCCEEEEe-ec------C---CCCCEEEEEEEeCCEEEEEEE--ecCC--CceEEEcHHHE
Confidence 58999999996 44 3 467889999999886666553 3454 33555554444
No 21
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=47.50 E-value=13 Score=30.29 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=24.9
Q ss_pred HhhCCCCEEEEEec-CceeeCccCccccccceeE-Eeee
Q 031165 32 RTYKIGDYVDVKVN-GAVHKGMPHKFYHGRTGRV-WNVT 68 (164)
Q Consensus 32 ~~yk~GD~VdIk~~-~svqKGmPhk~YHGkTG~V-~~v~ 68 (164)
..|++||.|-++-. +.-|--|| .+=.||||+| .-+.
T Consensus 121 ~~F~vGd~Vrv~~~~~~gHtR~P-~YvRGk~G~I~~~~~ 158 (212)
T 3a8g_B 121 TTFEVGQRVRVRDEYVPGHIRMP-AYCRGRVGTISHRTT 158 (212)
T ss_dssp CCCCTTCEEEECCCCCSSCCSCC-GGGTTCEEEEEEECS
T ss_pred cccCCCCeEEEecCCCCCccccc-HHHCCCeEEEEEEec
Confidence 35999999999843 44555566 4567999988 4433
No 22
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=43.14 E-value=14 Score=28.44 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=45.5
Q ss_pred CChHHHHHh--------hCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEE-----eeeCcEeeeeEE--
Q 031165 25 IPLSTYLRT--------YKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN-----KQVGNRIIKKRI-- 89 (164)
Q Consensus 25 ~~ls~~l~~--------yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vn-----k~v~~k~i~KrI-- 89 (164)
.|||.=|+. .+.||.|-|. -| .|-|++|.|..|.....-|+|. +. .|...+--|
T Consensus 32 a~LSkeLr~ky~vRs~~IkkgD~V~Vi-~G---------kdKGk~GkV~~V~~kk~~V~VEgVn~~K~-~G~~~e~pIh~ 100 (135)
T 4a17_S 32 AHLSKDLRSKYNVRSMPVRKDDEVLIV-RG---------KFKGNKGKVTQVYRKKWAIHVEKISKNKL-NGAPYQIPLSA 100 (135)
T ss_dssp EEECHHHHHHHTCSEEECCTTCEEEEC-SS---------TTTTCEEEEEEEETTTTEEEETTCCEEET-TTEEECCCBCG
T ss_pred CcCCHHHHHHhCCCcccccCCCEEEEe-ec---------CCCCceeeEEEEEcCCCEEEEeCeEEEcC-CCCEEEcccch
Confidence 367777776 6799999664 23 4889999999998765555542 11 232222222
Q ss_pred -eeeeceeecccChHHHHHHH
Q 031165 90 -HVRVEHVQPSRCTEEFKLRK 109 (164)
Q Consensus 90 -~VriEHik~sk~r~~fl~rv 109 (164)
||-+--++--+.|.+.|+|-
T Consensus 101 SNV~i~~~k~dk~R~~~lerk 121 (135)
T 4a17_S 101 SQLVLTKLKLDKSRQSLLTRK 121 (135)
T ss_dssp GGEEEEECCCCHHHHHHHHHH
T ss_pred HHEEEEcccCCcHHHHHhhhh
Confidence 34444445556677777774
No 23
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=42.79 E-value=40 Score=21.08 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=31.5
Q ss_pred hhCCCCEEEEEecCceeeCccCccccccceeEEeeecc--EEEEEEEeeeCcEeeeeEEeeeecee
Q 031165 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKR--AIGVEINKQVGNRIIKKRIHVRVEHV 96 (164)
Q Consensus 33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~--AvgV~Vnk~v~~k~i~KrI~VriEHi 96 (164)
.|++||.|-|. +| | |.|..|.|..+... -+.|.|+ .-|+ .-.+.+..+.|
T Consensus 4 ~~~~Gd~V~V~-~G------p---f~g~~g~v~~v~~~k~~v~V~v~--~~Gr--~t~v~l~~~~v 55 (58)
T 1nz9_A 4 AFREGDQVRVV-SG------P---FADFTGTVTEINPERGKVKVMVT--IFGR--ETPVELDFSQV 55 (58)
T ss_dssp SCCTTCEEEEC-SG------G---GTTCEEEEEEEETTTTEEEEEEE--SSSS--EEEEEECGGGE
T ss_pred ccCCCCEEEEe-ec------C---CCCcEEEEEEEcCCCCEEEEEEE--eCCC--EEEEEECHHHE
Confidence 47899999986 33 4 45778888888654 4666665 4555 23444444443
No 24
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=40.46 E-value=30 Score=26.22 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=37.3
Q ss_pred hCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEE-----eeeCcEeeeeEE---eeeeceeecccChHHH
Q 031165 34 YKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN-----KQVGNRIIKKRI---HVRVEHVQPSRCTEEF 105 (164)
Q Consensus 34 yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vn-----k~v~~k~i~KrI---~VriEHik~sk~r~~f 105 (164)
.+.||.|-|. -| .|-|++|.|..|.....-|+|. +.-| ...+--| ||-+--++-.+.|...
T Consensus 50 IkkgD~V~Vi-~G---------kdKGk~GkV~~V~~kk~~V~VEgVn~~K~~G-~~~e~pIh~SNV~i~~~~~dk~R~~~ 118 (127)
T 3u5e_Y 50 IRRDDEVLVV-RG---------SKKGQEGKISSVYRLKFAVQVDKVTKEKVNG-ASVPINLHPSKLVITKLHLDKDRKAL 118 (127)
T ss_dssp CCTTCEEEEC-SS---------TTTTCEEEEEEEEGGGTEEEEETCEEECSSS-CEEECCBCGGGEEEEECCCCHHHHHH
T ss_pred ccCCCEEEEe-ec---------CCCCccceEEEEECCCCEEEEeCeEEECCCC-cEEEcccchHHEEEEccccCcHHHHH
Confidence 3589999664 23 4789999999998765445442 2222 2112222 3444445555566666
Q ss_pred HHH
Q 031165 106 KLR 108 (164)
Q Consensus 106 l~r 108 (164)
|+|
T Consensus 119 ler 121 (127)
T 3u5e_Y 119 IQR 121 (127)
T ss_dssp HHH
T ss_pred hhh
Confidence 666
No 25
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=39.42 E-value=18 Score=27.08 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=25.3
Q ss_pred hCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEE
Q 031165 34 YKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEIN 77 (164)
Q Consensus 34 yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vn 77 (164)
.+.||.|-|.- | .|-|++|.|..|......|+|.
T Consensus 43 IkkGD~V~Vi~-G---------~dKGk~GkV~~V~~k~~~V~VE 76 (120)
T 1vq8_T 43 VNAGDTVEVLR-G---------DFAGEEGEVINVDLDKAVIHVE 76 (120)
T ss_dssp CCTTCEEEECS-S---------TTTTCEEEEEEEETTTTEEEET
T ss_pred ccCCCEEEEEe-c---------CCCCCEEEEEEEECCCCEEEEe
Confidence 57899998852 2 2679999999998766555553
No 26
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=39.37 E-value=11 Score=25.08 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=18.0
Q ss_pred cccCCcccCCCCCChHHHHHhhCCCCEEEEEecC
Q 031165 13 DLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNG 46 (164)
Q Consensus 13 ~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~~ 46 (164)
..++..||++.+-++ +||+|.+...+
T Consensus 34 ~~i~Gk~Rk~~i~i~--------~GD~V~ve~~~ 59 (71)
T 1hr0_W 34 AYISGKMRMHYIRIL--------PGDRVVVEITP 59 (71)
T ss_dssp CEECHHHHHTCCCCC--------TTCEEEEECCT
T ss_pred EEEcceEeccCcCCC--------CCCEEEEEEEc
Confidence 345556777666554 89999998654
No 27
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=37.71 E-value=15 Score=24.41 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=19.2
Q ss_pred cccCCcccCCCCCChHHHHHhhCCCCEEEEEec
Q 031165 13 DLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVN 45 (164)
Q Consensus 13 ~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIk~~ 45 (164)
..++..||++.+-++ +||+|.+...
T Consensus 33 ~~i~Gk~Rk~~i~i~--------vGD~V~ve~~ 57 (71)
T 1ah9_A 33 AHISGKMRKNYIRIL--------TGDKVTVELT 57 (71)
T ss_dssp EEECSSGGGTTCCCC--------TTCEECCEEC
T ss_pred EEEcceEeccCccCC--------CCCEEEEEEe
Confidence 456778888877664 9999999764
No 28
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.28 E-value=26 Score=27.09 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=25.0
Q ss_pred hhCCCCEEEEEecCceeeCccCccccccc-eeEEeeeccEEEEEE
Q 031165 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRT-GRVWNVTKRAIGVEI 76 (164)
Q Consensus 33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkT-G~V~~v~~~AvgV~V 76 (164)
..+.||.|-|.- | .|-|++ |.|..|.....-|+|
T Consensus 48 ~IkkGD~V~Vi~-G---------kdKGk~~GkV~~V~~k~~~V~V 82 (145)
T 2zkr_t 48 PIRKDDEVQVVR-G---------HYKGQQIGKVVQVYRKKYVIYI 82 (145)
T ss_dssp BCCTTCEEEECS-S---------TTTTCCSEEEEEEETTTTEEEE
T ss_pred ccCCCCEEEEee-c---------CCCCcceeEEEEEECCCCEEEE
Confidence 377899998853 2 267999 999999866555554
No 29
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=32.73 E-value=99 Score=22.21 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=28.2
Q ss_pred ccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEE
Q 031165 52 MPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRI 89 (164)
Q Consensus 52 mPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI 89 (164)
-+++.|-|-.|+|..=|.+++.|+.. .+-+.++|.-
T Consensus 25 S~~pslVGi~GiVV~ETkntf~I~t~--~~~k~VPK~~ 60 (102)
T 1ts9_A 25 SPNHSEVGIKGEVVDETQNTLKIMTE--KGLKVVAKRG 60 (102)
T ss_dssp CSSGGGTTCEEEEEEECSSEEEEEES--SSEEEEECTT
T ss_pred cCCCCccCcEEEEEEeccceEEEEeC--CcEEEEECCC
Confidence 47889999999999999999998862 3345566643
No 30
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=31.71 E-value=73 Score=21.46 Aligned_cols=54 Identities=20% Similarity=0.128 Sum_probs=36.2
Q ss_pred HHhhCCCCEEEEEecCceeeCccCccccccceeEEeeecc-EEEEEEEeeeCcEeeeeEEeeeeceeecccC
Q 031165 31 LRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKR-AIGVEINKQVGNRIIKKRIHVRVEHVQPSRC 101 (164)
Q Consensus 31 l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~-AvgV~Vnk~v~~k~i~KrI~VriEHik~sk~ 101 (164)
+..|++||.|-.+= ..|.- |- ++|..+++. .|.|... .| ..-.|+..||++...
T Consensus 4 ~~~~~vGd~vmArW----~D~~y---Yp---A~I~si~~~~~Y~V~F~--dG-----~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 4 SSEFQINEQVLACW----SDCRF---YP---AKVTAVNKDGTYTVKFY--DG-----VVQTVKHIHVKAFSK 58 (67)
T ss_dssp -CCCCTTCEEEEEC----TTSCE---EE---EEEEEECTTSEEEEEET--TS-----CEEEEEGGGEEECC-
T ss_pred CcccccCCEEEEEc----CCCCE---ee---EEEEEECCCCeEEEEEe--CC-----ceEEEeHHHcccCCc
Confidence 46899999999873 34444 43 668888885 5666654 24 345678999998754
No 31
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=30.70 E-value=44 Score=23.09 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=29.3
Q ss_pred hCCCCEEEEEecCceeeCccCccccccceeEEeeeccE----EEEEEE
Q 031165 34 YKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRA----IGVEIN 77 (164)
Q Consensus 34 yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~A----vgV~Vn 77 (164)
.+.|+.|-|. -|-.+|.+-.|.|..|.+.. +.|...
T Consensus 2 i~rGs~VrIl--------r~eSywy~~vG~V~~Vd~~~~~ypV~VrFe 41 (70)
T 1qp2_A 2 VQRGSKVRIL--------RPESYWFQDVGTVASVDQSGIKYPVIVRFE 41 (70)
T ss_dssp CCTTCEEEEC--------CTTSTTTTCEEEEEEECCSSCSCSEEEECS
T ss_pred cCCCCEEEEc--------CccceeecceeEEEEEeCCCcEeeEEEEec
Confidence 3679999887 68899999999999999986 555443
No 32
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.23 E-value=28 Score=26.04 Aligned_cols=41 Identities=34% Similarity=0.590 Sum_probs=28.5
Q ss_pred ChHHHHH--------hhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEE
Q 031165 26 PLSTYLR--------TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEI 76 (164)
Q Consensus 26 ~ls~~l~--------~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~V 76 (164)
|||.=|+ ..+.||.|-|. -| .|-|++|.|..|.....-|+|
T Consensus 30 ~LSkeLR~ky~~r~~~IkkGD~V~Vi-~G---------kdKGk~GkV~~V~~k~~~V~V 78 (121)
T 3j21_U 30 PLSRELREKYKVRNLPVRVGDKVRIM-RG---------DYKGHEGKVVEVDLKRYRIYV 78 (121)
T ss_dssp EBCHHHHHHTCCSEEECCSSSEEEEC-SS---------SCSSEEEEEEEEETTTTEEEE
T ss_pred cCCHHHHHHhCCcccccccCCEEEEe-ec---------CCCCcEeEEEEEEecCCEEEE
Confidence 5665554 24689999764 33 477999999999866555554
No 33
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=29.75 E-value=5.6 Score=32.30 Aligned_cols=47 Identities=28% Similarity=0.486 Sum_probs=32.9
Q ss_pred hhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeecc
Q 031165 33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPS 99 (164)
Q Consensus 33 ~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~s 99 (164)
.+++||.|-|.- | .+-|++|.|..|.... |+++..-||+.--|++++
T Consensus 68 kIkKGD~V~VIa-G---------kDKGK~GkVl~V~~k~----------~rViVEGVN~vkKH~Kp~ 114 (191)
T 3bbo_W 68 HVKVGDTVKVIS-G---------GEKGKIGEISKIHKHN----------STVIIKDLNFKTKHVKSK 114 (191)
T ss_dssp CSCCSSCEEECS-S---------SSTTCCCSCCCCCSSS----------CCCCCSSCCCCCCBCCSC
T ss_pred eeecCCEEEEee-c---------CCCCceEEEEEEECCC----------CEEEEeCCEEEEEecCCc
Confidence 378999998852 2 2679999999886543 444445567777777774
No 34
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=28.56 E-value=47 Score=23.21 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=25.1
Q ss_pred CCCCEEEEEecCceeeCccCccccccceeEEeeecc
Q 031165 35 KIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKR 70 (164)
Q Consensus 35 k~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~ 70 (164)
+.||+|-|. .|-.++...+|+|.+|.+.
T Consensus 2 ~RGskVrIl--------R~ESYWyn~vGtVasVD~s 29 (75)
T 1jb0_E 2 QRGSKVKIL--------RPESYWYNEVGTVASVDQT 29 (75)
T ss_dssp CTTCEEEEC--------CTTCTTBTCEEEEEEECCC
T ss_pred CCCCEEEEc--------cccceeecCcceEEEEecC
Confidence 579999997 7899999999999999886
No 35
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=28.28 E-value=14 Score=24.42 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=16.1
Q ss_pred CCCCChHHHH----HhhCCCCEEEEEec
Q 031165 22 KGYIPLSTYL----RTYKIGDYVDVKVN 45 (164)
Q Consensus 22 ~G~~~ls~~l----~~yk~GD~VdIk~~ 45 (164)
.|++++|.+. ..|++||.|.+++.
T Consensus 30 ~Gllh~sel~~~~~~~~~~Gd~V~v~V~ 57 (80)
T 2k52_A 30 RGLLRPRDMISLRLENLNVGDEIIVQAI 57 (80)
T ss_dssp EEEECGGGCSSCCGGGCCTTCEEEEEEE
T ss_pred EEEEEHHHCCcccceeeCCCCEEEEEEE
Confidence 3555555433 47999999988654
No 36
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=27.75 E-value=66 Score=23.73 Aligned_cols=55 Identities=18% Similarity=0.313 Sum_probs=38.5
Q ss_pred HhhCCCCEEEEEecCceeeCccCccccccceeEEeeecc--EEEEEEEeeeCcEeeeeEEeeeeceeeccc
Q 031165 32 RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKR--AIGVEINKQVGNRIIKKRIHVRVEHVQPSR 100 (164)
Q Consensus 32 ~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~--AvgV~Vnk~v~~k~i~KrI~VriEHik~sk 100 (164)
..|++||.|-|. +| | |-|-.|.|..+..+ -+.|.+. .-|+ +-.+.+....|++.+
T Consensus 90 ~~~~~Gd~VrI~-~G------p---f~g~~g~V~~vd~~k~~v~V~v~--~~gr--~tpvel~~~~v~~i~ 146 (152)
T 3p8b_B 90 SGLEPGDLVEVI-AG------P---FKGQKAKVVKIDESKDEVVVQFI--DAIV--PIPVTIKGDYVRLIS 146 (152)
T ss_dssp TTCCTTCEEEEC-SS------T---TTTCEEEEEEEETTTTEEEEEES--SCSS--CCEEEEEGGGEEEEE
T ss_pred ccCCCCCEEEEe-ee------c---CCCCEEEEEEEeCCCCEEEEEEE--ecce--eEEEEECHHHEEEec
Confidence 468999999996 33 5 55778888888754 4555554 5676 455777777777654
No 37
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=27.66 E-value=52 Score=26.76 Aligned_cols=30 Identities=27% Similarity=0.559 Sum_probs=22.2
Q ss_pred HHhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEE
Q 031165 31 LRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVE 75 (164)
Q Consensus 31 l~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~ 75 (164)
-+.|++||.|.|. |-+|+|..++=++..+.
T Consensus 126 ~~pf~vGD~I~i~---------------~~~G~V~~I~l~~T~i~ 155 (285)
T 3udc_A 126 EDQFSVGDYVTIN---------------GISGTVEEIGLRVTKIR 155 (285)
T ss_dssp TTSCCTTCEEEET---------------TEEEEEEEECSSEEEEE
T ss_pred hCCccCCCEEEEC---------------CEEEEEEEeeeeEEEEe
Confidence 3679999999982 45688888777766553
No 38
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=24.49 E-value=48 Score=27.04 Aligned_cols=28 Identities=32% Similarity=0.619 Sum_probs=22.3
Q ss_pred HhhCCCCEEEEEecCceeeCccCccccccceeEEeeeccEEEE
Q 031165 32 RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGV 74 (164)
Q Consensus 32 ~~yk~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV 74 (164)
+.|++||+|.|. |-+|+|..++=++..+
T Consensus 128 ~pf~vGD~I~i~---------------g~~G~V~~I~l~~T~i 155 (286)
T 2vv5_A 128 RPFRAGEYVDLG---------------GVAGTVLSVQIFSTTM 155 (286)
T ss_dssp CSSCTTCEEESS---------------SCEEEEEEECSSEEEE
T ss_pred CCccCCCEEEEC---------------CEEEEEEEEEeEEEEE
Confidence 569999999872 5688888888777665
No 39
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=23.03 E-value=62 Score=20.21 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=9.3
Q ss_pred hCCCCEEEEEe
Q 031165 34 YKIGDYVDVKV 44 (164)
Q Consensus 34 yk~GD~VdIk~ 44 (164)
|+.||+|.|.-
T Consensus 22 f~~Gd~i~v~~ 32 (67)
T 2bzy_A 22 LEVGDIVKVTR 32 (67)
T ss_dssp BCTTCEEEEEE
T ss_pred cCCCCEEEEEE
Confidence 78999999854
No 40
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=22.35 E-value=47 Score=21.03 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=10.6
Q ss_pred hhCCCCEEEEEec
Q 031165 33 TYKIGDYVDVKVN 45 (164)
Q Consensus 33 ~yk~GD~VdIk~~ 45 (164)
.|+.||+|.|.-.
T Consensus 27 s~~~Gd~i~v~~~ 39 (73)
T 2k9g_A 27 TIKEGDIVTLINK 39 (73)
T ss_dssp CBCTTCEEEEEEC
T ss_pred eECCCCEEEEEEC
Confidence 3789999999754
No 41
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=22.24 E-value=41 Score=26.00 Aligned_cols=14 Identities=36% Similarity=0.975 Sum_probs=12.5
Q ss_pred hhCCCCEEEEEecC
Q 031165 33 TYKIGDYVDVKVNG 46 (164)
Q Consensus 33 ~yk~GD~VdIk~~~ 46 (164)
.|.+||++||-|-|
T Consensus 126 rF~iGDyidvaI~p 139 (143)
T 4a6q_A 126 KFQIGDYLDIAITP 139 (143)
T ss_dssp TCCTTCEEEEEEEC
T ss_pred CCcCCCEEEEEEeC
Confidence 69999999998876
No 42
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.01 E-value=69 Score=21.92 Aligned_cols=47 Identities=30% Similarity=0.510 Sum_probs=36.2
Q ss_pred CCCEEEEEecCceeeCccCccccccceeEEeeeccEEEEEEEeeeCcEeeeeEEeeeeceeec
Q 031165 36 IGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQP 98 (164)
Q Consensus 36 ~GD~VdIk~~~svqKGmPhk~YHGkTG~V~~v~~~AvgV~Vnk~v~~k~i~KrI~VriEHik~ 98 (164)
+|..|.|. +| | |-|.-|+|..+|..-+-|++.- + .|.|.|.-+||..
T Consensus 20 iGktV~I~------kG-p---yKG~~GiVkd~t~~~~RVELhs----~--~K~VtV~r~~l~~ 66 (71)
T 2e70_A 20 IGQTVRIS------QG-P---YKGYIGVVKDATESTARVELHS----T--CQTISVDRQRLTT 66 (71)
T ss_dssp TTSEEEEC------SS-T---TTTCEEEEEEECSSCEEEEESS----S--CCEEEECTTTEEE
T ss_pred CCCEEEEe------cc-C---CCCeEEEEEECCCCeEEEEecC----C--ceEEEEEhhhccc
Confidence 58888885 33 5 4588899999999999999863 2 4888888888754
No 43
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.99 E-value=31 Score=24.01 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=11.3
Q ss_pred HhhCCCCEEEEEecC
Q 031165 32 RTYKIGDYVDVKVNG 46 (164)
Q Consensus 32 ~~yk~GD~VdIk~~~ 46 (164)
..|++||.|.+++..
T Consensus 59 ~~~~~Gd~V~VkV~~ 73 (103)
T 2eqs_A 59 DVVSKGQRVKVKVLS 73 (103)
T ss_dssp HHCCTTCEEEEEEEE
T ss_pred cEeCCCCEEEEEEEE
Confidence 568889998887643
No 44
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=20.83 E-value=54 Score=20.11 Aligned_cols=12 Identities=8% Similarity=0.465 Sum_probs=10.0
Q ss_pred hCCCCEEEEEec
Q 031165 34 YKIGDYVDVKVN 45 (164)
Q Consensus 34 yk~GD~VdIk~~ 45 (164)
|+.||+|.|.-.
T Consensus 25 ~~~Gd~i~v~~~ 36 (64)
T 2jte_A 25 FREGEIIHLISK 36 (64)
T ss_dssp BCTTCEEEEEES
T ss_pred CCCCCEEEEEEC
Confidence 789999999743
No 45
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=20.66 E-value=61 Score=20.30 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=9.3
Q ss_pred hCCCCEEEEEe
Q 031165 34 YKIGDYVDVKV 44 (164)
Q Consensus 34 yk~GD~VdIk~ 44 (164)
|+.||+|.|.-
T Consensus 27 ~~~Gd~i~v~~ 37 (67)
T 2eyx_A 27 LEVGELVKVTK 37 (67)
T ss_dssp BCSSEEEEEEE
T ss_pred cCCCCEEEEEE
Confidence 78999999854
Done!