BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031166
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WXU|A Chain A, Clostridium Perfringens Alpha-Toxin Strain Nctc8237 Mutant
T74i
pdb|2WY6|A Chain A, Clostridium Perfringens Alpha-Toxin Strain Nctc8237 Mutant
T74i
pdb|2WY6|B Chain B, Clostridium Perfringens Alpha-Toxin Strain Nctc8237 Mutant
T74i
pdb|2WY6|C Chain C, Clostridium Perfringens Alpha-Toxin Strain Nctc8237 Mutant
T74i
Length = 370
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 13/54 (24%)
Query: 73 FYETQIDN----------AYDFPIFGAGQARKYSAMLPLQWLRCSCR---FCMG 113
F++ IDN AY P G Q RK+SA+ +W R + + F +G
Sbjct: 69 FWDPDIDNNFSKDNSWYLAYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLG 122
>pdb|1OGY|A Chain A, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|C Chain C, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|E Chain E, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|G Chain G, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|I Chain I, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|K Chain K, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|M Chain M, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|O Chain O, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
Length = 802
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 15/59 (25%)
Query: 85 PIFGAGQARKYSAMLPLQWLRCSCRFC-------MGT--GSVTVELGGDEREFSKCINC 134
P+ G +A L ++W + CRFC +GT G V G + E ++ +NC
Sbjct: 2 PVTGGAEA------LRIRWSKAPCRFCGTGCGVMVGTRDGQVVATHGDTQAEVNRGLNC 54
>pdb|3O5A|A Chain A, Crystal Structure Of Partially Reduced Periplasmic Nitrate
Reductase From Cupriavidus Necator Using Ionic Liquids
Length = 802
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 96 SAMLPLQWLRCSCRFCMGTG-SVTVEL---------GGDEREFSKCINC 134
S + L+W + CRFC GTG VTV + G + E +K +NC
Sbjct: 7 SEVTKLKWSKAPCRFC-GTGCGVTVAVKDNKVVATQGDPQAEVNKGLNC 54
>pdb|3ML1|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
From Cupriavidus Necator
Length = 802
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 96 SAMLPLQWLRCSCRFCMGTG-SVTVEL---------GGDEREFSKCINC 134
S + L+W + CRFC GTG VTV + G + E +K +NC
Sbjct: 7 SEVTKLKWSKAPCRFC-GTGCGVTVAVKDNKVVATQGDPQAEVNKGLNC 54
>pdb|1GYG|A Chain A, R32 Closed Form Of Alpha-Toxin From Clostridium
Perfringens Strain Cer89l43
pdb|1GYG|B Chain B, R32 Closed Form Of Alpha-Toxin From Clostridium
Perfringens Strain Cer89l43
pdb|1CA1|A Chain A, Alpha-Toxin From Clostridium Perfringens
Length = 370
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 81 AYDFPIFGAGQARKYSAMLPLQWLRCSCR---FCMG 113
AY P G Q RK+SA+ +W R + + F +G
Sbjct: 87 AYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLG 122
>pdb|1QM6|A Chain A, R32 Form Of Clostridium Perfringens Alpha-Toxin Strain
pdb|1QM6|B Chain B, R32 Form Of Clostridium Perfringens Alpha-Toxin Strain
pdb|1QMD|A Chain A, Calcium Bound Closed Form Alpha-Toxin From Clostridium
Perfringens
pdb|1QMD|B Chain B, Calcium Bound Closed Form Alpha-Toxin From Clostridium
Perfringens
pdb|2WXT|A Chain A, Clostridium Perfringens Alpha-Toxin Strain Nctc8237
Length = 370
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 81 AYDFPIFGAGQARKYSAMLPLQWLRCSCR---FCMG 113
AY P G Q RK+SA+ +W R + + F +G
Sbjct: 87 AYSIPDTGESQIRKFSALARYEWQRGNYKQATFYLG 122
>pdb|2Q6T|A Chain A, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|B Chain B, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|C Chain C, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|D Chain D, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
Length = 444
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 36 QRSSAPYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYD 83
Q S P E Q + AIS GL ++A +GIPI +Q+ A +
Sbjct: 320 QLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVE 367
>pdb|3N6X|A Chain A, Crystal Structure Of A Putative Glutathionylspermidine
Synth (Mfla_0391) From Methylobacillus Flagellatus Kt At
2.35 A R
Length = 474
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 141 TCTTCQGTGIQPRYLDRREF 160
TC T TGI PR++D R F
Sbjct: 413 TCPTLVETGIAPRHVDLRPF 432
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 50 DQNTVVAISVGLVSVAVGIGIPIFYET---------QIDNAYDFPIFGAGQARKYSAMLP 100
+ TVV SVGL+ +A G IF I+ A F +F ARK S +
Sbjct: 86 SKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF---LARKVSLLRA 142
Query: 101 LQWLRCSCRFCM-GTGSVTVELGGDEREFSKCINCDGVG 138
L ++ C + G G V + G +F N +G
Sbjct: 143 LVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALG 181
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 50 DQNTVVAISVGLVSVAVGIGIPIFYET---------QIDNAYDFPIFGAGQARKYSAMLP 100
+ TVV SVGL+ +A G IF I+ A F +F ARK S +
Sbjct: 63 SKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF---LARKVSLLRA 119
Query: 101 LQWLRCSCRFCM-GTGSVTVELGGDEREFSKCINCDGVG 138
L ++ C + G G V + G +F N +G
Sbjct: 120 LVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALG 158
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 50 DQNTVVAISVGLVSVAVGIGIPIFYET---------QIDNAYDFPIFGAGQARKYSAMLP 100
+ TVV SVGL+ +A G IF I+ A F +F ARK S +
Sbjct: 63 SKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF---LARKVSLLRA 119
Query: 101 LQWLRCSCRFCM-GTGSVTVELGGDEREFSKCINCDGVG 138
L ++ C + G G V + G +F N +G
Sbjct: 120 LVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALG 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,655,495
Number of Sequences: 62578
Number of extensions: 181142
Number of successful extensions: 331
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 15
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)