Query 031166
Match_columns 164
No_of_seqs 170 out of 820
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 10:11:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 100.0 4.3E-29 9.4E-34 190.7 6.4 104 47-164 1-111 (111)
2 COG0484 DnaJ DnaJ-class molecu 99.8 3.4E-21 7.3E-26 171.8 9.1 93 51-154 116-212 (371)
3 PRK14282 chaperone protein Dna 99.7 6.4E-17 1.4E-21 142.1 8.8 92 51-153 126-223 (369)
4 PRK14298 chaperone protein Dna 99.7 5.4E-17 1.2E-21 143.4 8.3 91 51-152 115-211 (377)
5 PRK14279 chaperone protein Dna 99.7 5.1E-17 1.1E-21 144.2 8.1 90 51-152 147-239 (392)
6 PRK14278 chaperone protein Dna 99.7 6.5E-17 1.4E-21 142.8 8.5 91 51-152 113-209 (378)
7 PRK14284 chaperone protein Dna 99.7 5.9E-17 1.3E-21 143.5 8.2 90 51-152 132-224 (391)
8 PRK14276 chaperone protein Dna 99.7 6.7E-17 1.4E-21 142.7 8.3 91 51-152 120-216 (380)
9 PRK14295 chaperone protein Dna 99.7 6.7E-17 1.4E-21 143.3 8.3 90 51-152 140-232 (389)
10 PRK14286 chaperone protein Dna 99.7 7.2E-17 1.6E-21 142.3 8.0 90 51-152 124-216 (372)
11 PRK14280 chaperone protein Dna 99.7 9.8E-17 2.1E-21 141.4 8.6 92 50-152 116-213 (376)
12 PRK14285 chaperone protein Dna 99.7 9.2E-17 2E-21 141.3 7.7 90 51-152 120-212 (365)
13 PRK14296 chaperone protein Dna 99.7 1E-16 2.2E-21 141.5 7.8 91 51-152 123-219 (372)
14 PRK14301 chaperone protein Dna 99.7 1.1E-16 2.3E-21 141.2 7.6 90 51-152 118-210 (373)
15 PRK14287 chaperone protein Dna 99.7 2.7E-16 5.8E-21 138.6 8.7 92 50-152 111-208 (371)
16 PRK10767 chaperone protein Dna 99.7 2.2E-16 4.9E-21 138.4 8.1 91 50-152 115-208 (371)
17 PRK14297 chaperone protein Dna 99.7 2.8E-16 6.1E-21 138.5 8.8 91 51-152 122-218 (380)
18 PRK14281 chaperone protein Dna 99.7 2.8E-16 6E-21 139.6 8.4 90 51-152 137-232 (397)
19 PRK14288 chaperone protein Dna 99.7 2.2E-16 4.7E-21 139.1 7.4 89 51-152 114-205 (369)
20 PRK14300 chaperone protein Dna 99.6 3.1E-16 6.7E-21 138.1 8.2 90 51-152 119-211 (372)
21 PRK14277 chaperone protein Dna 99.6 4.3E-16 9.4E-21 137.8 8.6 91 51-152 129-225 (386)
22 PRK14291 chaperone protein Dna 99.6 4.5E-16 9.8E-21 137.5 8.4 90 51-152 130-221 (382)
23 PRK14294 chaperone protein Dna 99.6 4.4E-16 9.6E-21 136.7 8.2 91 50-152 117-210 (366)
24 TIGR02349 DnaJ_bact chaperone 99.6 5.5E-16 1.2E-20 134.8 8.2 91 51-152 117-213 (354)
25 PRK14289 chaperone protein Dna 99.6 1.9E-15 4.2E-20 133.3 8.2 91 51-152 128-224 (386)
26 PRK14290 chaperone protein Dna 99.6 4.3E-15 9.4E-20 130.4 8.7 92 50-153 122-219 (365)
27 PTZ00037 DnaJ_C chaperone prot 99.6 3.3E-15 7.2E-20 134.5 7.7 90 51-152 124-221 (421)
28 PRK14283 chaperone protein Dna 99.6 5.6E-15 1.2E-19 130.2 8.2 91 51-152 120-216 (378)
29 PRK14293 chaperone protein Dna 99.6 5.1E-15 1.1E-19 130.3 7.9 92 51-153 117-214 (374)
30 PRK14292 chaperone protein Dna 99.6 7.2E-15 1.6E-19 128.9 8.4 92 51-152 113-210 (371)
31 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.4 1.1E-13 2.4E-18 95.6 5.0 58 84-149 2-66 (66)
32 KOG0712 Molecular chaperone (D 99.1 1.3E-10 2.9E-15 103.1 5.8 91 50-152 100-199 (337)
33 KOG0715 Molecular chaperone (D 98.7 4.3E-09 9.4E-14 91.0 1.3 92 50-153 137-231 (288)
34 KOG2813 Predicted molecular ch 98.2 6.7E-07 1.5E-11 80.3 2.1 29 127-155 244-272 (406)
35 COG1107 Archaea-specific RecJ- 98.1 9.3E-07 2E-11 84.2 1.9 65 78-154 3-83 (715)
36 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.9 4.6E-06 1E-10 57.5 1.7 39 108-152 1-54 (66)
37 KOG2813 Predicted molecular ch 97.8 7.5E-06 1.6E-10 73.7 1.6 74 66-153 173-259 (406)
38 COG0484 DnaJ DnaJ-class molecu 97.6 2.4E-05 5.1E-10 70.8 1.6 42 105-152 142-196 (371)
39 PLN03165 chaperone protein dna 97.5 9.7E-05 2.1E-09 56.9 2.9 37 104-152 40-88 (111)
40 PRK14279 chaperone protein Dna 97.3 0.00015 3.2E-09 65.0 2.3 42 105-152 173-225 (392)
41 PRK14296 chaperone protein Dna 97.1 0.00023 5E-09 63.4 1.9 42 105-152 149-205 (372)
42 PRK14278 chaperone protein Dna 97.1 0.00028 6.2E-09 62.8 2.1 42 105-152 139-195 (378)
43 PRK14300 chaperone protein Dna 97.1 0.00028 6E-09 62.7 1.9 41 106-152 146-197 (372)
44 PRK14298 chaperone protein Dna 97.0 0.0003 6.4E-09 62.8 1.9 42 105-152 141-197 (377)
45 PRK14284 chaperone protein Dna 97.0 0.0003 6.5E-09 62.9 1.9 42 105-152 158-210 (391)
46 PRK14286 chaperone protein Dna 97.0 0.00032 7E-09 62.4 2.1 42 105-152 150-202 (372)
47 COG1107 Archaea-specific RecJ- 97.0 0.00092 2E-08 64.3 4.9 58 78-146 19-87 (715)
48 PRK14301 chaperone protein Dna 97.0 0.00037 8E-09 62.0 2.0 41 106-152 145-196 (373)
49 PRK14282 chaperone protein Dna 97.0 0.00039 8.5E-09 61.6 2.1 42 105-152 152-208 (369)
50 PRK10767 chaperone protein Dna 97.0 0.00044 9.5E-09 61.2 2.2 42 105-152 142-194 (371)
51 PRK14288 chaperone protein Dna 97.0 0.00039 8.5E-09 61.8 1.9 40 106-152 141-191 (369)
52 PRK14276 chaperone protein Dna 96.9 0.00036 7.7E-09 62.2 1.6 41 106-152 147-202 (380)
53 PRK14295 chaperone protein Dna 96.9 0.00046 1E-08 61.8 2.0 42 105-152 166-218 (389)
54 PRK14285 chaperone protein Dna 96.9 0.00042 9E-09 61.5 1.7 41 106-152 147-198 (365)
55 PRK14297 chaperone protein Dna 96.9 0.00049 1.1E-08 61.2 2.1 41 106-152 149-204 (380)
56 PRK14287 chaperone protein Dna 96.9 0.00045 9.7E-09 61.4 1.6 41 106-152 139-194 (371)
57 PTZ00037 DnaJ_C chaperone prot 96.9 0.0005 1.1E-08 62.6 1.9 43 105-154 150-207 (421)
58 TIGR02642 phage_xxxx uncharact 96.8 0.00056 1.2E-08 56.8 1.9 25 128-152 99-128 (186)
59 PRK14280 chaperone protein Dna 96.8 0.00055 1.2E-08 60.9 1.8 41 106-152 144-199 (376)
60 PRK14294 chaperone protein Dna 96.8 0.00074 1.6E-08 59.8 2.3 41 106-152 145-196 (366)
61 PRK14277 chaperone protein Dna 96.8 0.00072 1.6E-08 60.4 2.0 42 105-152 155-211 (386)
62 PRK14291 chaperone protein Dna 96.7 0.0008 1.7E-08 60.0 1.9 41 105-151 156-207 (382)
63 TIGR02349 DnaJ_bact chaperone 96.7 0.00084 1.8E-08 58.8 2.0 42 105-152 143-199 (354)
64 PRK14289 chaperone protein Dna 96.7 0.00075 1.6E-08 60.1 1.5 42 105-152 154-210 (386)
65 TIGR02642 phage_xxxx uncharact 96.6 0.0011 2.4E-08 55.0 2.2 13 107-119 117-129 (186)
66 PRK14290 chaperone protein Dna 96.6 0.00093 2E-08 59.2 1.9 40 106-152 150-204 (365)
67 PRK14281 chaperone protein Dna 96.6 0.0011 2.5E-08 59.4 1.8 40 106-152 164-218 (397)
68 PRK14283 chaperone protein Dna 96.5 0.0014 3.1E-08 58.3 2.0 41 106-152 147-202 (378)
69 PRK14293 chaperone protein Dna 96.4 0.0018 3.8E-08 57.6 2.4 42 105-152 143-199 (374)
70 PRK14292 chaperone protein Dna 96.1 0.0027 5.8E-08 56.2 1.5 43 105-152 139-196 (371)
71 KOG2824 Glutaredoxin-related p 95.3 0.018 4E-07 50.8 3.7 48 84-146 233-280 (281)
72 cd03031 GRX_GRX_like Glutaredo 94.8 0.027 5.9E-07 44.8 3.0 45 84-142 103-147 (147)
73 PF07092 DUF1356: Protein of u 93.7 0.028 6.1E-07 48.5 1.1 28 126-153 25-52 (238)
74 TIGR00630 uvra excinuclease AB 91.2 0.15 3.2E-06 51.1 2.6 38 107-155 738-775 (924)
75 PRK00349 uvrA excinuclease ABC 89.2 0.25 5.5E-06 49.6 2.4 37 107-154 740-776 (943)
76 TIGR00630 uvra excinuclease AB 87.6 0.25 5.3E-06 49.5 1.1 12 107-118 276-287 (924)
77 KOG0712 Molecular chaperone (D 86.6 0.3 6.4E-06 44.1 1.0 50 84-140 147-198 (337)
78 PRK00635 excinuclease ABC subu 85.3 0.54 1.2E-05 50.4 2.3 15 107-121 1609-1623(1809)
79 COG0178 UvrA Excinuclease ATPa 84.7 0.79 1.7E-05 46.2 3.0 30 107-136 732-761 (935)
80 cd03031 GRX_GRX_like Glutaredo 82.2 1 2.2E-05 35.8 2.2 12 141-152 135-146 (147)
81 PRK00349 uvrA excinuclease ABC 82.1 0.69 1.5E-05 46.5 1.4 13 107-119 278-290 (943)
82 TIGR03655 anti_R_Lar restricti 80.8 2.8 6E-05 27.6 3.6 11 107-117 3-13 (53)
83 PF07092 DUF1356: Protein of u 79.6 0.74 1.6E-05 39.9 0.6 15 107-121 40-54 (238)
84 PF14354 Lar_restr_allev: Rest 78.1 3.1 6.7E-05 27.5 3.2 16 105-121 3-18 (61)
85 PF14353 CpXC: CpXC protein 74.6 3.6 7.8E-05 31.0 3.1 33 107-140 3-50 (128)
86 KOG2824 Glutaredoxin-related p 73.0 2.5 5.5E-05 37.5 2.2 24 129-152 230-253 (281)
87 PRK00635 excinuclease ABC subu 72.6 1.6 3.5E-05 46.9 1.0 26 130-155 1609-1646(1809)
88 KOG0715 Molecular chaperone (D 72.3 1.8 4E-05 37.7 1.2 43 105-153 164-217 (288)
89 PF13719 zinc_ribbon_5: zinc-r 67.4 2.2 4.8E-05 26.4 0.5 29 107-135 4-32 (37)
90 COG0178 UvrA Excinuclease ATPa 66.8 3.1 6.8E-05 42.1 1.5 34 123-156 722-770 (935)
91 PF03589 Antiterm: Antitermina 60.6 3.3 7.1E-05 30.9 0.3 33 107-139 7-43 (95)
92 COG3809 Uncharacterized protei 54.7 7.7 0.00017 29.1 1.4 10 107-116 3-12 (88)
93 PF08792 A2L_zn_ribbon: A2L zi 54.0 15 0.00032 22.6 2.4 26 105-135 3-28 (33)
94 PF13453 zf-TFIIB: Transcripti 53.6 16 0.00035 22.7 2.6 6 108-113 2-7 (41)
95 TIGR02098 MJ0042_CXXC MJ0042 f 53.2 6 0.00013 23.9 0.6 30 107-136 4-33 (38)
96 PRK10266 curved DNA-binding pr 51.8 12 0.00026 32.5 2.4 29 50-78 117-145 (306)
97 PF14803 Nudix_N_2: Nudix N-te 51.7 14 0.0003 23.0 2.0 28 107-135 2-29 (34)
98 PF08271 TF_Zn_Ribbon: TFIIB z 50.4 10 0.00022 23.8 1.3 9 107-115 2-10 (43)
99 PF01556 CTDII: DnaJ C termina 50.3 8.4 0.00018 26.9 1.0 19 54-72 3-21 (81)
100 PRK04023 DNA polymerase II lar 48.2 9.9 0.00021 39.4 1.5 64 60-150 609-674 (1121)
101 PRK03564 formate dehydrogenase 47.7 28 0.00061 31.2 4.1 12 104-115 186-197 (309)
102 PF08273 Prim_Zn_Ribbon: Zinc- 46.8 13 0.00029 23.8 1.5 13 107-119 5-17 (40)
103 COG1198 PriA Primosomal protei 44.4 20 0.00044 35.6 2.9 86 39-148 383-484 (730)
104 PRK14299 chaperone protein Dna 43.9 14 0.0003 31.9 1.6 26 51-76 130-155 (291)
105 smart00709 Zpr1 Duplicated dom 43.2 35 0.00076 27.6 3.7 31 107-137 2-38 (160)
106 TIGR00595 priA primosomal prot 43.1 19 0.0004 33.7 2.4 38 106-148 223-262 (505)
107 PRK14714 DNA polymerase II lar 43.0 18 0.00039 38.3 2.4 58 66-150 657-720 (1337)
108 smart00778 Prim_Zn_Ribbon Zinc 42.7 15 0.00032 23.3 1.2 12 107-118 5-16 (37)
109 COG3058 FdhE Uncharacterized p 42.3 7.3 0.00016 35.0 -0.4 36 105-140 185-237 (308)
110 TIGR03835 termin_org_DnaJ term 40.3 17 0.00037 36.8 1.8 29 52-80 658-686 (871)
111 PF13717 zinc_ribbon_4: zinc-r 39.5 13 0.00029 22.9 0.6 29 107-135 4-32 (36)
112 PRK05580 primosome assembly pr 39.0 21 0.00045 34.5 2.1 58 67-148 366-430 (679)
113 PRK00488 pheS phenylalanyl-tRN 38.3 19 0.00042 32.6 1.7 24 125-151 257-280 (339)
114 TIGR00757 RNaseEG ribonuclease 38.2 16 0.00035 33.6 1.2 14 106-119 391-404 (414)
115 PF04216 FdhE: Protein involve 38.0 39 0.00084 29.0 3.4 50 101-150 168-222 (290)
116 smart00440 ZnF_C2C2 C2C2 Zinc 37.6 67 0.0015 20.1 3.6 29 107-135 2-35 (40)
117 PRK14892 putative transcriptio 36.4 30 0.00066 26.2 2.2 29 105-146 21-49 (99)
118 PRK12775 putative trifunctiona 36.2 32 0.0007 34.9 3.0 56 104-162 795-858 (1006)
119 TIGR01562 FdhE formate dehydro 35.7 31 0.00066 30.8 2.5 47 104-150 183-235 (305)
120 PF03367 zf-ZPR1: ZPR1 zinc-fi 35.3 44 0.00094 26.9 3.1 31 107-137 3-39 (161)
121 PRK09710 lar restriction allev 34.9 63 0.0014 23.0 3.5 15 104-118 5-19 (64)
122 TIGR00757 RNaseEG ribonuclease 34.6 18 0.00039 33.3 0.9 12 129-140 391-402 (414)
123 PF01096 TFIIS_C: Transcriptio 34.6 65 0.0014 20.0 3.2 29 107-135 2-35 (39)
124 PRK00423 tfb transcription ini 34.5 46 0.001 29.0 3.4 28 137-164 28-58 (310)
125 PRK00420 hypothetical protein; 31.0 32 0.0007 26.6 1.6 6 107-112 25-30 (112)
126 PRK06921 hypothetical protein; 30.6 42 0.00091 28.6 2.4 14 107-120 34-47 (266)
127 PRK00488 pheS phenylalanyl-tRN 30.5 35 0.00076 31.0 2.0 41 61-121 232-284 (339)
128 PF09723 Zn-ribbon_8: Zinc rib 29.5 50 0.0011 20.7 2.1 28 107-136 7-34 (42)
129 TIGR00310 ZPR1_znf ZPR1 zinc f 28.8 78 0.0017 26.4 3.7 31 107-137 2-39 (192)
130 PRK14873 primosome assembly pr 28.2 46 0.00099 32.5 2.5 86 38-149 326-432 (665)
131 PF14369 zf-RING_3: zinc-finge 28.2 56 0.0012 20.1 2.1 11 107-118 23-33 (35)
132 PRK12380 hydrogenase nickel in 27.9 43 0.00094 25.3 1.9 6 107-112 72-77 (113)
133 PF05129 Elf1: Transcription e 27.5 50 0.0011 23.9 2.0 33 105-147 22-54 (81)
134 PF01155 HypA: Hydrogenase exp 26.0 41 0.0009 25.3 1.4 23 127-149 69-96 (113)
135 TIGR00340 zpr1_rel ZPR1-relate 25.2 97 0.0021 25.2 3.5 30 108-137 1-37 (163)
136 PF11672 DUF3268: Protein of u 25.0 76 0.0017 24.2 2.7 15 105-119 2-16 (102)
137 PF07295 DUF1451: Protein of u 24.8 58 0.0013 26.1 2.2 12 141-152 132-143 (146)
138 PRK03976 rpl37ae 50S ribosomal 24.8 88 0.0019 23.5 3.0 27 104-135 35-61 (90)
139 PRK11712 ribonuclease G; Provi 24.8 30 0.00065 32.7 0.6 14 106-119 403-416 (489)
140 PRK11712 ribonuclease G; Provi 24.3 31 0.00068 32.6 0.6 12 129-140 403-414 (489)
141 COG1327 Predicted transcriptio 23.8 43 0.00093 27.6 1.2 31 107-137 2-37 (156)
142 PRK00464 nrdR transcriptional 23.6 93 0.002 25.1 3.1 31 107-137 2-37 (154)
143 PF04438 zf-HIT: HIT zinc fing 23.2 56 0.0012 19.6 1.4 18 129-146 3-20 (30)
144 PF09986 DUF2225: Uncharacteri 22.4 1.4E+02 0.003 24.9 4.0 14 105-118 5-18 (214)
145 PF10080 DUF2318: Predicted me 21.1 67 0.0015 24.4 1.8 12 107-118 37-48 (102)
146 COG1645 Uncharacterized Zn-fin 20.8 61 0.0013 25.9 1.5 21 127-147 27-52 (131)
147 PF14599 zinc_ribbon_6: Zinc-r 20.1 82 0.0018 21.9 1.9 11 107-117 32-42 (61)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.95 E-value=4.3e-29 Score=190.70 Aligned_cols=104 Identities=79% Similarity=1.366 Sum_probs=97.7
Q ss_pred ccCCcceEEEEEEeceeeeeecceEEEEEeeeCCCCC-------CCeeeeccCCCccCcccCCcCccccCCCCcccEEEE
Q 031166 47 AELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYD-------FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTV 119 (164)
Q Consensus 47 ~dl~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~-------~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~ 119 (164)
.||||||+++|.+.....|+|++|||+|++|++.++. ..|+|+|+. +|+.|+|+|++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~--------------~C~~C~G~G~v~~ 66 (111)
T PLN03165 1 VDLDQNTIVAISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQ--------------VCRFCVGSGNVTV 66 (111)
T ss_pred CccchhhhhhhhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCc--------------CCCCCcCcCeEEE
Confidence 3899999999999999999999999999999999866 899999985 7999999999987
Q ss_pred EeCCceeeeeeCCCCCccceeeCCCCcCceeeccccCCCcccCCC
Q 031166 120 ELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYLDRREFKDDD 164 (164)
Q Consensus 120 ~~~G~~~~~~~C~~C~G~Gki~C~~C~G~G~v~~~l~~~~~~~~~ 164 (164)
.+++.++.+++|++|+|.|+++|+.|+|+|++++||++|+|||||
T Consensus 67 ~~~g~~q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~~~~~~~~~~~ 111 (111)
T PLN03165 67 ELGGGEKEVSKCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD 111 (111)
T ss_pred EeCCcEEEEEECCCCCCcceeeCCCCCCCEEEeeeecccccCCCC
Confidence 765668889999999999999999999999999999999999998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.4e-21 Score=171.82 Aligned_cols=93 Identities=20% Similarity=0.384 Sum_probs=84.6
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe-CCceeeee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL-GGDEREFS 129 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~-~G~~~~~~ 129 (164)
.|..+.|+|+|+||++|++++|.|++++.| +.|+|+|+++++ .+.+|++|+|+|++...+ .|.|+.++
T Consensus 116 ~Dl~~~l~isleEa~~G~~~~i~~~~~~~C---~~C~GsGak~gt--------~~~tC~tC~G~G~v~~~~~~g~~~~~~ 184 (371)
T COG0484 116 ADLRYNLEITLEEAVFGVKKEIRVTRSVTC---STCHGSGAKPGT--------DPKTCPTCNGSGQVRTVQRTGFFSFQQ 184 (371)
T ss_pred CceEEEEEeEhhhhccCceeeEecceeeEC---CcCCCCCCCCCC--------CCCcCCCCCCcCeEEEEEeeeEEEEEE
Confidence 356788999999999999999999999999 999999999987 578999999999987754 37899999
Q ss_pred eCCCCCcccee---eCCCCcCceeeccc
Q 031166 130 KCINCDGVGSL---TCTTCQGTGIQPRY 154 (164)
Q Consensus 130 ~C~~C~G~Gki---~C~~C~G~G~v~~~ 154 (164)
+|++|+|+|++ +|++|+|.|++..+
T Consensus 185 ~C~~C~G~G~~i~~pC~~C~G~G~v~~~ 212 (371)
T COG0484 185 TCPTCNGTGKIIKDPCGKCKGKGRVKKK 212 (371)
T ss_pred ECCCCccceeECCCCCCCCCCCCeEeee
Confidence 99999999999 79999999997753
No 3
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=6.4e-17 Score=142.12 Aligned_cols=92 Identities=27% Similarity=0.422 Sum_probs=83.0
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.|.|+|+|++.|..++|.|.+.+.| ..|+|+|+..+. .+.+|+.|+|+|.+...+ +|.++.
T Consensus 126 ~di~~~l~~slee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~~ 194 (369)
T PRK14282 126 EDIRYEIEVTLSDLINGAEIPVEYDRYETC---PHCGGTGVEPGS--------GYVTCPKCHGTGRIREERRSFFGVFVS 194 (369)
T ss_pred CCeEEEEEEEHHHhcCCeEEEEEeeecccC---CCCCccCCCCCC--------CCcCCCCCCCcCEEEEEEEccCcceEE
Confidence 577899999999999999999999999999 999999998765 467999999999987754 578889
Q ss_pred eeeCCCCCcccee---eCCCCcCceeecc
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQPR 153 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~~ 153 (164)
.++|+.|+|.|++ +|+.|+|.|++..
T Consensus 195 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 223 (369)
T PRK14282 195 ERTCERCGGTGKIPGEYCHECGGSGRIRR 223 (369)
T ss_pred EEECCCCCCcceeCCCCCCCCCCceeEEE
Confidence 9999999999999 7999999998753
No 4
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=5.4e-17 Score=143.40 Aligned_cols=91 Identities=25% Similarity=0.379 Sum_probs=82.8
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.|.|+|+|++.|..++|.|++.+.| ..|+|+|+..++ .+.+|+.|+|+|++...+ +|.++.
T Consensus 115 ~di~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~ 183 (377)
T PRK14298 115 SDLRYDLYITLEEAAFGVRKDIDVPRAERC---STCSGTGAKPGT--------SPKRCPTCGGTGQVTTTRSTPLGQFVT 183 (377)
T ss_pred CCEEEEEEEEHHHhhCCeEEEEEEEeeccC---CCCCCCcccCCC--------CCCcCCCCCCccEEEEEEecCceeEEE
Confidence 577899999999999999999999999999 999999999775 467999999999988764 567889
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
.++|+.|+|.|++ +|+.|+|.|++.
T Consensus 184 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 211 (377)
T PRK14298 184 TTTCSTCHGRGQVIESPCPVCSGTGKVR 211 (377)
T ss_pred EEeCCCCCCCCcccCCCCCCCCCccEEE
Confidence 9999999999998 799999999975
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=5.1e-17 Score=144.20 Aligned_cols=90 Identities=23% Similarity=0.512 Sum_probs=82.5
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK 130 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~ 130 (164)
+|..+.|.|+|+|++.|..++|.+++.+.| ..|+|+|+..+. .+.+|+.|+|+|++...+ |.++..++
T Consensus 147 ~di~~~l~ltLee~~~G~~~~v~~~~~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~~ 214 (392)
T PRK14279 147 NDLETETTLDFVEAAKGVTMPLRLTSPAPC---TTCHGSGARPGT--------SPKVCPTCNGSGVISRNQ-GAFGFSEP 214 (392)
T ss_pred CCeEEEEEEEHHHHhCCeEEEEeeeccccC---CCCccccccCCC--------CCCCCCCCcceEEEEEEe-cceEEEEe
Confidence 577889999999999999999999999999 999999998765 467999999999998776 77788999
Q ss_pred CCCCCcccee---eCCCCcCceeec
Q 031166 131 CINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 131 C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
|+.|+|+|++ +|+.|+|.|++.
T Consensus 215 C~~C~G~G~~i~~~C~~C~G~g~v~ 239 (392)
T PRK14279 215 CTDCRGTGSIIEDPCEECKGTGVTT 239 (392)
T ss_pred cCCCCceeEEeCCcCCCCCCCeEEE
Confidence 9999999999 799999999875
No 6
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=6.5e-17 Score=142.81 Aligned_cols=91 Identities=24% Similarity=0.458 Sum_probs=82.3
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.|.|+|+|++.|..++|.|++.+.| ..|+|+|+..++ .+.+|+.|+|+|++...+ +|.++.
T Consensus 113 ~d~~~~l~vtLee~~~G~~~~i~~~~~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~ 181 (378)
T PRK14278 113 SDSLLRMRLDLEECATGVTKQVTVDTAVLC---DRCHGKGTAGDS--------KPVTCDTCGGRGEVQTVQRSFLGQVMT 181 (378)
T ss_pred CCeEEEEEEEHHHhcCCeEEEEEEEeeccC---CCCcCccCCCCC--------CceecCCccCceEEEEEEeccceeEEE
Confidence 567899999999999999999999999999 999999998765 467999999999987754 577888
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
.++|+.|+|.|++ +|+.|+|.|++.
T Consensus 182 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 209 (378)
T PRK14278 182 SRPCPTCRGVGEVIPDPCHECAGDGRVR 209 (378)
T ss_pred EEECCCCCccceeeCCCCCCCCCceeEe
Confidence 8999999999999 799999999875
No 7
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=5.9e-17 Score=143.45 Aligned_cols=90 Identities=23% Similarity=0.392 Sum_probs=82.6
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK 130 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~ 130 (164)
++..+.|.|+|+|++.|..++|.|.+.+.| ..|+|+|+..++ .+++|+.|+|+|.+...+ |.++..++
T Consensus 132 ~d~~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~v~~~~-G~~~~~~~ 199 (391)
T PRK14284 132 ASKKVHITLSFEEAAKGVEKELLVSGYKSC---DACSGSGANSSQ--------GIKVCDRCKGSGQVVQSR-GFFSMAST 199 (391)
T ss_pred CCeEEEEEEEHHHHhCCeeEEEEEeeeccC---CCCcccccCCCC--------CCeecCccCCeeEEEEEe-ceEEEEEE
Confidence 467899999999999999999999999999 999999998765 467999999999998776 77889999
Q ss_pred CCCCCcccee---eCCCCcCceeec
Q 031166 131 CINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 131 C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
|+.|+|.|++ +|+.|+|.|++.
T Consensus 200 C~~C~G~G~~~~~~C~~C~G~g~v~ 224 (391)
T PRK14284 200 CPECGGEGRVITDPCSVCRGQGRIK 224 (391)
T ss_pred CCCCCCCCcccCCcCCCCCCcceec
Confidence 9999999998 799999999975
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=6.7e-17 Score=142.65 Aligned_cols=91 Identities=24% Similarity=0.466 Sum_probs=82.6
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.|.|+|+|++.|..++|.|.+.+.| ..|+|+|+..++ .+.+|+.|+|+|.+...+ +|.++.
T Consensus 120 ~di~~~l~vtLee~~~G~~~~i~~~~~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~~ 188 (380)
T PRK14276 120 DDLQYRVNLDFEEAIFGKEKEVSYNREATC---HTCNGSGAKPGT--------SPVTCGKCHGSGVITVDTQTPLGMMRR 188 (380)
T ss_pred CCEEEEEEEEHHHhcCCeEEEEEeeccccC---CCCcCcccCCCC--------CCccCCCCCCeeEEEEEEecCCceEEE
Confidence 467889999999999999999999999999 999999998765 467999999999987764 577888
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
.++|+.|+|.|++ +|+.|+|.|++.
T Consensus 189 ~~~C~~C~G~G~~~~~~C~~C~G~g~~~ 216 (380)
T PRK14276 189 QVTCDVCHGTGKEIKEPCQTCHGTGHEK 216 (380)
T ss_pred EEECCCCCCCCccccCCCCCCCCceEEE
Confidence 9999999999999 799999999975
No 9
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=6.7e-17 Score=143.35 Aligned_cols=90 Identities=22% Similarity=0.447 Sum_probs=82.7
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK 130 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~ 130 (164)
+|..+.|.|+|+|++.|..++|.|++.+.| ..|+|+|+..++ .+.+|+.|+|+|++...+ |.|+.+++
T Consensus 140 ~di~~~l~lsLee~~~G~~k~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~~ 207 (389)
T PRK14295 140 ADVESEVTLSFTEAIDGATVPLRLTSQAPC---PACSGTGAKNGT--------TPRVCPTCSGTGQVSRNS-GGFSLSEP 207 (389)
T ss_pred CCEEEEEEEEHHHHhCCceEEEEeeccccC---CCCcccccCCCC--------CCcCCCCCCCEeEEEEEe-cceEEEEe
Confidence 577889999999999999999999999999 999999999775 467999999999998876 67889999
Q ss_pred CCCCCcccee---eCCCCcCceeec
Q 031166 131 CINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 131 C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
|+.|+|.|++ +|+.|.|.|++.
T Consensus 208 C~~C~G~G~~~~~~C~~C~G~g~~~ 232 (389)
T PRK14295 208 CPDCKGRGLIADDPCLVCKGSGRAK 232 (389)
T ss_pred cCCCcceeEEeccCCCCCCCCceEe
Confidence 9999999999 699999999875
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=7.2e-17 Score=142.26 Aligned_cols=90 Identities=24% Similarity=0.433 Sum_probs=82.6
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK 130 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~ 130 (164)
+|..+.|.|+|+|++.|..++|.|++.+.| ..|+|+|+..+. .+.+|+.|+|+|.+...+ |.++..++
T Consensus 124 ~di~~~l~vtLee~~~G~~k~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~v~~~~-G~~~~~~~ 191 (372)
T PRK14286 124 SDLRYNLEVSLEDAALGREYKIEIPRLESC---VDCNGSGASKGS--------SPTTCPDCGGSGQIRRTQ-GFFSVATT 191 (372)
T ss_pred CCeeEEEEEEHHHHhCCeeEEEEeeccccC---CCCcCCCcCCCC--------CCccCCCCcCeEEEEEEe-ceEEEEEe
Confidence 578899999999999999999999999999 999999998765 467999999999988775 77889999
Q ss_pred CCCCCcccee---eCCCCcCceeec
Q 031166 131 CINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 131 C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
|+.|+|.|++ +|+.|+|.|.+.
T Consensus 192 C~~C~G~G~~~~~~C~~C~G~g~~~ 216 (372)
T PRK14286 192 CPTCRGKGTVISNPCKTCGGQGLQE 216 (372)
T ss_pred CCCCCceeeEecccCCCCCCCcEEe
Confidence 9999999999 799999999986
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=9.8e-17 Score=141.42 Aligned_cols=92 Identities=23% Similarity=0.416 Sum_probs=82.7
Q ss_pred CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCcee
Q 031166 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDER 126 (164)
Q Consensus 50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~ 126 (164)
.+|..+.|.|+|+|++.|..++|.|++.+.| ..|+|+|+..++ .+.+|+.|+|+|++...+ +|.++
T Consensus 116 g~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~ 184 (376)
T PRK14280 116 GADLQYTMTLTFEEAVFGKEKEIEIPKEETC---DTCHGSGAKPGT--------SKETCSHCGGSGQVSVEQNTPFGRVV 184 (376)
T ss_pred ccCEEEEEEEEHHHHhCCceeEEEEeeeccC---CCCCCcccCCCC--------CCccCCCCCCEEEEEEEeecCCceEE
Confidence 3577899999999999999999999999999 999999998765 467999999999987764 46778
Q ss_pred eeeeCCCCCcccee---eCCCCcCceeec
Q 031166 127 EFSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 127 ~~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
..++|+.|+|.|++ +|+.|+|.|++.
T Consensus 185 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 213 (376)
T PRK14280 185 NRQTCPHCNGTGQEIKEKCPTCHGKGKVR 213 (376)
T ss_pred EEEEcCCCCCCCceecCCCCCCCCceEEE
Confidence 88999999999998 699999999875
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=9.2e-17 Score=141.28 Aligned_cols=90 Identities=24% Similarity=0.449 Sum_probs=81.9
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK 130 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~ 130 (164)
+|..+.|.|+|+|++.|..++|.|++.+.| ..|+|+|+..+. .+.+|+.|+|+|++... .|.++.+++
T Consensus 120 ~di~~~l~vtlee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~-~G~~~~~~~ 187 (365)
T PRK14285 120 QDLTYQIEISLEDAYLGYKNNINITRNMLC---ESCLGKKSEKGT--------SPSICNMCNGSGRVMQG-GGFFRVTTT 187 (365)
T ss_pred CCEEEEEEEEHHHhhCCeEEEEEeeecccC---CCCCCcccCCCC--------CCccCCCccCceeEEec-CceeEEeee
Confidence 577899999999999999999999999999 999999998765 46799999999998864 477888999
Q ss_pred CCCCCcccee---eCCCCcCceeec
Q 031166 131 CINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 131 C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
|+.|+|.|++ +|+.|+|.|++.
T Consensus 188 C~~C~G~G~~~~~~C~~C~G~g~v~ 212 (365)
T PRK14285 188 CPKCYGNGKIISNPCKSCKGKGSLK 212 (365)
T ss_pred cCCCCCcccccCCCCCCCCCCCEEe
Confidence 9999999999 799999999875
No 13
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1e-16 Score=141.48 Aligned_cols=91 Identities=26% Similarity=0.465 Sum_probs=80.3
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe-CCc--eee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL-GGD--ERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~-~G~--~~~ 127 (164)
+|..+.|.|+|+||+.|.+++|.|++.+.| ..|+|+|+..+. .+.+|+.|+|+|.+...+ .|. ++.
T Consensus 123 ~di~~~l~ltlee~~~G~~~~i~~~~~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~g~~~~q~ 191 (372)
T PRK14296 123 QSVSLDIYLTFKELLFGVDKIIELDLLTNC---SKCFGSGAESNS--------DIHICNNCHGTGEVLVQKNMGFFQFQQ 191 (372)
T ss_pred CCeEEEeeccHHHhhCCeeEEEEEeeeecc---CCCCCCccCCCC--------CCccCCCCCCCceEEEEEeccceEEEE
Confidence 577889999999999999999999999999 999999998765 467999999999987754 343 456
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
.++|+.|+|.|++ +|+.|+|.|++.
T Consensus 192 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 219 (372)
T PRK14296 192 SAKCNVCNGAGKIIKNKCKNCKGKGKYL 219 (372)
T ss_pred EecCCCcCCcceeecccccCCCCceEEE
Confidence 7899999999999 699999999875
No 14
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.1e-16 Score=141.20 Aligned_cols=90 Identities=24% Similarity=0.424 Sum_probs=82.5
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK 130 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~ 130 (164)
+|..+.|.|+|+|++.|.+++|.+++.+.| ..|+|+|+..+. .+.+|+.|+|+|++...+ |.++..++
T Consensus 118 ~di~~~l~vtLee~~~G~~k~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~v~~~~-G~~~~~~~ 185 (373)
T PRK14301 118 SDLRYNLTVSFRQAAKGDEVTLRIPKNVTC---DDCGGSGAAPGT--------SPETCRHCGGSGQVRQSQ-GFFQIAVP 185 (373)
T ss_pred CCEEEEEeccHHHHhCCceEEEEeeecccC---CCCCCcccCCCC--------CCcccCCccCeeEEEEEe-eeEEEEEe
Confidence 578899999999999999999999999999 999999998765 467999999999998765 77888999
Q ss_pred CCCCCcccee---eCCCCcCceeec
Q 031166 131 CINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 131 C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
|+.|+|.|++ +|+.|+|.|++.
T Consensus 186 C~~C~G~G~~~~~~C~~C~G~g~v~ 210 (373)
T PRK14301 186 CPVCRGEGRVITHPCPKCKGSGIVQ 210 (373)
T ss_pred CCCCCceeeecCCCCCCCCCCceec
Confidence 9999999999 799999999975
No 15
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=2.7e-16 Score=138.60 Aligned_cols=92 Identities=22% Similarity=0.406 Sum_probs=82.6
Q ss_pred CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCcee
Q 031166 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDER 126 (164)
Q Consensus 50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~ 126 (164)
.+|..+.|.|+|+|+++|..++|.|.+.+.| ..|+|+|+..+. .+.+|+.|+|+|++...+ +|.++
T Consensus 111 g~d~~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~ 179 (371)
T PRK14287 111 GADLQYTMTLEFKEAVFGKETEIEIPREETC---GTCHGSGAKPGT--------KPETCSHCGGSGQLNVEQNTPFGRVV 179 (371)
T ss_pred CCCEEEEEEEEHHHhcCCeEEEEEEeeeccC---CCCCCcccCCCC--------CCcccCCCCCEEEEEEEEecCCceEE
Confidence 3577899999999999999999999999999 999999998765 466899999999987765 57788
Q ss_pred eeeeCCCCCcccee---eCCCCcCceeec
Q 031166 127 EFSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 127 ~~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
..++|+.|+|.|++ +|..|+|.|.+.
T Consensus 180 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 208 (371)
T PRK14287 180 NRRVCHHCEGTGKIIKQKCATCGGKGKVR 208 (371)
T ss_pred EEEeCCCCCCCCccccccCCCCCCeeEEe
Confidence 88999999999999 799999999875
No 16
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=2.2e-16 Score=138.41 Aligned_cols=91 Identities=22% Similarity=0.405 Sum_probs=82.6
Q ss_pred CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeee
Q 031166 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFS 129 (164)
Q Consensus 50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~ 129 (164)
.+|..+.|.|+|+|++.|..++|.|++.+.| ..|+|+|...+. .+..|+.|+|+|.+...+ |.++..+
T Consensus 115 g~di~~~l~vsLee~~~G~~~~v~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~ 182 (371)
T PRK10767 115 GADLRYNMEITLEEAVRGVTKEIRIPTLVTC---DTCHGSGAKPGT--------SPKTCPTCHGAGQVRMQQ-GFFTVQQ 182 (371)
T ss_pred CCCeEEEEEeehHHhhCCeeEEEeeeecccC---CCCCCcccCCCC--------CCccCCCCCCeeEEEEee-ceEEEEE
Confidence 3577899999999999999999999999999 999999998765 456899999999988776 7778889
Q ss_pred eCCCCCcccee---eCCCCcCceeec
Q 031166 130 KCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 130 ~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
+|+.|+|.|++ +|+.|+|.|++.
T Consensus 183 ~C~~C~G~G~~~~~~C~~C~G~g~v~ 208 (371)
T PRK10767 183 TCPTCHGRGKIIKDPCKKCHGQGRVE 208 (371)
T ss_pred eCCCCCCceeECCCCCCCCCCCceEe
Confidence 99999999999 799999999975
No 17
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=2.8e-16 Score=138.51 Aligned_cols=91 Identities=22% Similarity=0.399 Sum_probs=82.2
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.|.|+|+|++.|..++|.|++.+.| ..|+|+|..++. .+.+|+.|+|+|++...+ +|.++.
T Consensus 122 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~~ 190 (380)
T PRK14297 122 ADIEYTINLTFEEAVFGVEKEISVTRNENC---ETCNGTGAKPGT--------SPKTCDKCGGTGQIRVQRNTPLGSFVS 190 (380)
T ss_pred CCEEEEEEEEHHHhcCCeEEEEEeeeeccC---CCcccccccCCC--------cCccCCCccCeEEEEEEEEcCCceeEE
Confidence 578899999999999999999999999999 999999998765 366899999999987754 577888
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
.++|+.|+|.|++ +|..|+|.|++.
T Consensus 191 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 218 (380)
T PRK14297 191 TTTCDKCGGSGKVIEDPCNKCHGKGKVR 218 (380)
T ss_pred EEeCCCCCCCceEcCCCCCCCCCCeEEE
Confidence 9999999999999 799999999764
No 18
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=2.8e-16 Score=139.58 Aligned_cols=90 Identities=23% Similarity=0.478 Sum_probs=81.3
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.|.|+|+|++.|..++|.|++.+.| ..|+|+|+..+. +.+|+.|+|+|+++..+ +|.++.
T Consensus 137 ~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~---------~~~C~~C~G~G~~~~~~~~~~g~~~~ 204 (397)
T PRK14281 137 TDLKIRLKLTLEEIAKGVEKTLKIKKQVPC---KECNGTGSKTGA---------TETCPTCHGSGEVRQASKTMFGQFVN 204 (397)
T ss_pred CCEEEEEEeEHHHHhCCeEEEEEEEeeecC---CCCCCcccCCCC---------CccCCCCCCCcEEEEEEecccceEEE
Confidence 577889999999999999999999999999 999999998653 56899999999987764 577888
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
+++|+.|+|.|++ +|+.|+|.|++.
T Consensus 205 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 232 (397)
T PRK14281 205 ITACPTCGGEGRVVKDRCPACYGEGIKQ 232 (397)
T ss_pred EEecCCCcceeeeeCCCCCCCCCCccEe
Confidence 8999999999998 799999999985
No 19
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=2.2e-16 Score=139.11 Aligned_cols=89 Identities=22% Similarity=0.363 Sum_probs=80.8
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK 130 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~ 130 (164)
+|..+.|.|+|+|++.|..++|.|.+.+.| ..|+|+|+..+. +.+|+.|+|+|.+...+ |.++..++
T Consensus 114 ~di~~~l~vslee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~---------~~~C~~C~G~G~~~~~~-g~~~~~~~ 180 (369)
T PRK14288 114 PDYLQTIELSFKEAVFGCKKTIKVQYQSVC---ESCDGTGAKDKA---------LETCKQCNGQGQVFMRQ-GFMSFAQT 180 (369)
T ss_pred CCeeEeccccHHHHhCCeEEEEEEEeeccC---CCCCCcccCCCC---------CcCCCCCCCCcEEEEEe-ceEEEEEe
Confidence 577889999999999999999999999999 999999998653 56899999999988776 77888899
Q ss_pred CCCCCcccee---eCCCCcCceeec
Q 031166 131 CINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 131 C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
|+.|+|.|++ +|+.|+|.|++.
T Consensus 181 C~~C~G~G~~~~~~C~~C~G~g~v~ 205 (369)
T PRK14288 181 CGACQGKGKIIKTPCQACKGKTYIL 205 (369)
T ss_pred cCCCCCCceEccccCccCCCcceEE
Confidence 9999999998 799999999875
No 20
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=3.1e-16 Score=138.09 Aligned_cols=90 Identities=21% Similarity=0.453 Sum_probs=81.7
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK 130 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~ 130 (164)
++..+.|.|+|+|++.|..++|.|++.+.| ..|+|+|+..+. .+.+|+.|+|+|.+.... |.++...+
T Consensus 119 ~di~~~l~~sLee~~~G~~k~i~~~r~~~C---~~C~G~g~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~~ 186 (372)
T PRK14300 119 SDLKYNLTINLEEAFHGIEKNISFSSEVKC---DTCHGSGSEKGE--------TVTTCDACSGVGATRMQQ-GFFTIEQA 186 (372)
T ss_pred CCeeEEEEEEHHHHhCCceEEEEeeecccc---CCCCCcccCCCC--------CCccCCCccCeEEEEEee-ceEEEEEe
Confidence 477889999999999999999999999999 999999998665 466999999999988654 77888899
Q ss_pred CCCCCcccee---eCCCCcCceeec
Q 031166 131 CINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 131 C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
|+.|+|.|++ +|+.|+|.|++.
T Consensus 187 C~~C~G~G~~~~~~C~~C~G~g~v~ 211 (372)
T PRK14300 187 CHKCQGNGQIIKNPCKKCHGMGRYH 211 (372)
T ss_pred CCCCCccceEeCCCCCCCCCceEEE
Confidence 9999999999 799999999975
No 21
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=4.3e-16 Score=137.75 Aligned_cols=91 Identities=24% Similarity=0.385 Sum_probs=82.2
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.|.|+|+|++.|..++|.+++.+.| ..|+|+|+..+. .+.+|+.|+|+|++...+ +|.++.
T Consensus 129 ~di~~~l~vtLee~~~G~~~~v~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~~ 197 (386)
T PRK14277 129 ADIRYDLELTFEEAAFGTEKEIEVERFEKC---DVCKGSGAKPGS--------KPVTCPVCHGTGQVRTRQNTPFGRIVN 197 (386)
T ss_pred CCEEEEEEEEHHHHhCCeEEEEEEEeeccC---CCCCCCCcCCCC--------CCccCCCCCCEEEEEEEEeccCceEEE
Confidence 578899999999999999999999999999 999999998665 467999999999987654 577888
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
.++|+.|+|.|++ +|+.|+|.|.+.
T Consensus 198 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 225 (386)
T PRK14277 198 IRTCDRCHGEGKIITDPCNKCGGTGRIR 225 (386)
T ss_pred EEECCCCCcceeeccCCCCCCCCCcEEe
Confidence 8999999999999 799999999975
No 22
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=4.5e-16 Score=137.47 Aligned_cols=90 Identities=21% Similarity=0.372 Sum_probs=82.0
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSK 130 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~ 130 (164)
+|..+.|.|+|+||+.|..++|.+++.+.| ..|+|+|+..++ .+.+|+.|+|+|.+.... |.++..++
T Consensus 130 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~~ 197 (382)
T PRK14291 130 EDIYQTVEISLEEAYTGTTVSLEVPRYVPC---EACGGTGYDPGS--------GEKVCPTCGGSGEIYQRG-GFFRISQT 197 (382)
T ss_pred CCEEEEEEEEHHHhhCCEEEEEEEeeeccC---CCCccccCCCCC--------CCccCCCCCCceEEEEec-ceEEEEec
Confidence 578899999999999999999999999999 999999998765 467999999999988774 77888999
Q ss_pred CCCCCcccee--eCCCCcCceeec
Q 031166 131 CINCDGVGSL--TCTTCQGTGIQP 152 (164)
Q Consensus 131 C~~C~G~Gki--~C~~C~G~G~v~ 152 (164)
|+.|+|.|.+ +|+.|+|.|++.
T Consensus 198 C~~C~G~G~~~~~C~~C~G~g~v~ 221 (382)
T PRK14291 198 CPTCGGEGVLREPCSKCNGRGLVI 221 (382)
T ss_pred CCCCCCceEEccCCCCCCCCceEE
Confidence 9999999977 799999999875
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=4.4e-16 Score=136.68 Aligned_cols=91 Identities=23% Similarity=0.394 Sum_probs=82.5
Q ss_pred CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeee
Q 031166 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFS 129 (164)
Q Consensus 50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~ 129 (164)
.+|..+.|.|+|+|++.|..++|.+++.+.| ..|+|+|+..+. .+.+|+.|+|+|.+.... |.++..+
T Consensus 117 g~d~~~~l~lslee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-G~~~~~~ 184 (366)
T PRK14294 117 GADLRYDLTLPFLEAAFGTEKEIRIQKLETC---EECHGSGCEPGT--------SPTTCPQCGGSGQVTQSQ-GFFSIRT 184 (366)
T ss_pred CCCceEEEEeeHHHhcCCeEEEEEeeecccC---CCCCCccccCCC--------CcccCCCcCCeEEEEEEe-eeEEEEe
Confidence 3578899999999999999999999999999 999999998765 466999999999987655 7788899
Q ss_pred eCCCCCcccee---eCCCCcCceeec
Q 031166 130 KCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 130 ~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
+|+.|+|.|++ +|+.|+|.|.+.
T Consensus 185 ~C~~C~G~G~~~~~~C~~C~G~g~v~ 210 (366)
T PRK14294 185 TCPRCRGMGKVIVSPCKTCHGQGRVR 210 (366)
T ss_pred eCCCCCCcCeecCcCCCCCCCceEee
Confidence 99999999999 799999999975
No 24
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.64 E-value=5.5e-16 Score=134.83 Aligned_cols=91 Identities=22% Similarity=0.383 Sum_probs=82.1
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.|.|+|+|++.|..++|.+++.+.| ..|+|+|+..+. .+.+|+.|+|+|.+...+ +|.++.
T Consensus 117 ~d~~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~ 185 (354)
T TIGR02349 117 EDLRYDLELTFEEAVFGVEKEIEIPRKESC---ETCHGTGAKPGT--------DPKTCPTCGGTGQVRRQQGTPFGFFQQ 185 (354)
T ss_pred CCeEEEEEEEHHHHhCCeeEEEEeecCCcC---CCCCCCCCCCCC--------CCccCCCCCCeeEEEEEEeccCCceEE
Confidence 577899999999999999999999999999 999999998665 466899999999988765 467888
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
+++|+.|+|.|++ +|+.|+|.|++.
T Consensus 186 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 213 (354)
T TIGR02349 186 QQTCPTCGGEGKIIKEPCSTCKGKGRVK 213 (354)
T ss_pred EEecCCCCCcceecCCCCCCCCCCcEec
Confidence 8999999999998 699999999875
No 25
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.9e-15 Score=133.33 Aligned_cols=91 Identities=25% Similarity=0.467 Sum_probs=81.8
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.|.|+|+|++.|..++|.|.+.+.| ..|+|+|+..+. .+.+|+.|+|+|.+.... +|.++.
T Consensus 128 ~di~~~l~vsLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~G~~~~ 196 (386)
T PRK14289 128 SDLRVKVKLNLKEISTGVEKKFKVKKYVPC---SHCHGTGAEGNN--------GSETCPTCKGSGSVTRVQNTILGTMQT 196 (386)
T ss_pred CCeEEEEEEEHHHhhCCeEEEEEEEeeccc---CCCCCCCCCCCC--------CCCcCCCCcCeEEEEEEEecccceEEE
Confidence 577889999999999999999999999999 999999998654 466999999999988764 477888
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
..+|+.|+|.|++ .|+.|+|.|++.
T Consensus 197 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 224 (386)
T PRK14289 197 QSTCPTCNGEGKIIKKKCKKCGGEGIVY 224 (386)
T ss_pred EEecCCCCccccccCcCCCCCCCCcEEe
Confidence 9999999999998 799999999875
No 26
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=4.3e-15 Score=130.42 Aligned_cols=92 Identities=24% Similarity=0.409 Sum_probs=79.5
Q ss_pred CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe-CCce--e
Q 031166 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL-GGDE--R 126 (164)
Q Consensus 50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~-~G~~--~ 126 (164)
+++..+.|.|+|+|++.|..++|.+.+.+.| ..|+|+|+..+. +.+|+.|+|+|.+.... .|.+ +
T Consensus 122 ~~di~~~l~lsLee~~~G~~~~i~~~r~~~C---~~C~G~g~~~~~---------~~~C~~C~G~G~~~~~~~~g~~~~~ 189 (365)
T PRK14290 122 DLDIYTNLDISLEDAYYGTEKRIKYRRNAMC---PDCSGTGAKNGK---------LITCPTCHGTGQQRIVRGQGFFRMV 189 (365)
T ss_pred CCCEEEEEEecHHHhcCCEEEEEEeeecccC---CCCccccCCCCC---------CccCCCCCCcCEEEEEeccCeEEEE
Confidence 4678899999999999999999999999999 999999998642 56899999999987765 4543 3
Q ss_pred eeeeCCCCCcccee---eCCCCcCceeecc
Q 031166 127 EFSKCINCDGVGSL---TCTTCQGTGIQPR 153 (164)
Q Consensus 127 ~~~~C~~C~G~Gki---~C~~C~G~G~v~~ 153 (164)
..++|+.|+|.|++ +|+.|+|.|++..
T Consensus 190 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 219 (365)
T PRK14290 190 TVTTCRTCGGRGRIPEEKCPRCNGTGTVVV 219 (365)
T ss_pred EEEeCCCCCCceeEccCCCCCCCCceeEEE
Confidence 46799999999999 7999999999753
No 27
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.58 E-value=3.3e-15 Score=134.50 Aligned_cols=90 Identities=22% Similarity=0.467 Sum_probs=77.7
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEE-eCCc--eee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVE-LGGD--ERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~-~~G~--~~~ 127 (164)
+|..+.|.|+|+|++.|..++|.|.+.+.| ..|+|+|+..+ .+.+|+.|+|+|.+... +.|. ++.
T Consensus 124 ~di~~~l~vtLee~~~G~~~~i~~~r~~~C---~~C~G~G~~~~---------~~~~C~~C~G~G~~~~~~~~g~~~~q~ 191 (421)
T PTZ00037 124 EDIVSHLKVTLEQIYNGAMRKLAINKDVIC---ANCEGHGGPKD---------AFVDCKLCNGQGIRVQIRQMGSMIHQT 191 (421)
T ss_pred CCEEEEeeeeHHHHhCCCceEEEeeccccc---cccCCCCCCCC---------CCccCCCCCCCCeEEEEEeecceeeEE
Confidence 577899999999999999999999999999 99999998754 35689999999986543 3343 457
Q ss_pred eeeCCCCCcccee-----eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL-----TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki-----~C~~C~G~G~v~ 152 (164)
+++|+.|+|.|++ +|+.|+|.|++.
T Consensus 192 ~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 192 QSTCNSCNGQGKIIPESKKCKNCSGKGVKK 221 (421)
T ss_pred EEeCCCCCCcceeccccccCCcCCCcceee
Confidence 7899999999998 599999999986
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=5.6e-15 Score=130.25 Aligned_cols=91 Identities=22% Similarity=0.399 Sum_probs=81.5
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.+.|+|+|++.|..++|.+.+.+.| +.|+|+|...+. .+.+|+.|+|+|.+.... +|.++.
T Consensus 120 ~di~~~l~vsLed~~~G~~~~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~ 188 (378)
T PRK14283 120 ADIYTEVEITLEEAASGVEKDIKVRHTKKC---PVCNGSRAEPGS--------EVKTCPTCGGTGQVKQVRNTILGQMMN 188 (378)
T ss_pred CCeEEEeeeeHHHHhCCcceEEEeeeeccC---CCCCccccCCCC--------CCccCCCcCCccEEEEEEeccCceEEE
Confidence 466889999999999999999999999999 999999998665 466899999999987754 477888
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
..+|++|+|.|++ +|..|+|.|.+.
T Consensus 189 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 216 (378)
T PRK14283 189 VTTCPDCQGEGKIVEKPCSNCHGKGVVR 216 (378)
T ss_pred EEECCCCCccceecCCCCCCCCCceeec
Confidence 8999999999998 799999999875
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=5.1e-15 Score=130.33 Aligned_cols=92 Identities=21% Similarity=0.373 Sum_probs=81.2
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
.+-.+.|.|+|+|++.|..++|.|.+.+.| ..|+|+|+..+. .+.+|+.|+|+|.+.... .|.++.
T Consensus 117 ~di~~~l~vsLee~~~G~~k~i~~~r~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~g~~~~ 185 (374)
T PRK14293 117 DDLRYDLKLDFREAIFGGEKEIRIPHLETC---ETCRGSGAKPGT--------GPTTCSTCGGAGQVRRATRTPFGSFTQ 185 (374)
T ss_pred CCeEEEEEeeHHHHhCCceEEEEeeccccC---CCCCCcCCCCCC--------CCeeCCCCCCcceEEEEEecCcceEEE
Confidence 356688999999999999999999999999 999999998665 456899999999987754 477888
Q ss_pred eeeCCCCCcccee---eCCCCcCceeecc
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQPR 153 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~~ 153 (164)
..+|+.|+|.|++ +|+.|+|.|++..
T Consensus 186 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 214 (374)
T PRK14293 186 VSECPTCNGTGQVIEDPCDACGGQGVKQV 214 (374)
T ss_pred EeeCCCCCcceeEeccCCCCCCCCccccc
Confidence 8999999999999 7999999998753
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=7.2e-15 Score=128.93 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=81.2
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~ 127 (164)
+|..+.+.|+|+|+++|..++|.+++.+.| +.|+|+|+..+.. .+.+|+.|+|+|.+.... +|.++.
T Consensus 113 ~d~~~~l~~sLee~~~G~~~~v~~~r~~~C---~~C~G~G~~~~~~-------~~~~C~~C~G~G~~~~~~~~~~g~~~~ 182 (371)
T PRK14292 113 DDLETEARITLEQARAGEEVEVEVDRLTEC---EHCHGSRTEPGGK-------PPKTCPTCRGAGAVRAQARTIFGVVET 182 (371)
T ss_pred CCeEEEEeccHHHHcCCeEEEEEEEeeecC---CCCcccccCCCCC-------CCccCCCCCCccEEEEEEeccCceEEE
Confidence 577889999999999999999999999999 9999999986532 256899999999987654 577788
Q ss_pred eeeCCCCCcccee---eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
.++|+.|+|.|++ +|+.|.|.|++.
T Consensus 183 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 210 (371)
T PRK14292 183 QQPCPTCRGEGQIITDPCTVCRGRGRTL 210 (371)
T ss_pred eeecCCCcccceecCCCCCCCCCceEEe
Confidence 8999999999999 799999999875
No 31
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.45 E-value=1.1e-13 Score=95.56 Aligned_cols=58 Identities=33% Similarity=0.656 Sum_probs=47.4
Q ss_pred CCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe---CCceeeeeeCCCCCcccee----eCCCCcCce
Q 031166 84 FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL---GGDEREFSKCINCDGVGSL----TCTTCQGTG 149 (164)
Q Consensus 84 ~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~---~G~~~~~~~C~~C~G~Gki----~C~~C~G~G 149 (164)
+.|+|+|++++. .+.+|+.|+|+|++...+ ++.++.+++|+.|+|+|++ +|+.|+|+|
T Consensus 2 ~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 2 PKCNGTGAKPGK--------KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp CCCTTTSB-STT--------T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CcCCCcccCCCC--------CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 789999997665 577999999999998865 6789999999999999999 499999986
No 32
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.3e-10 Score=103.13 Aligned_cols=91 Identities=23% Similarity=0.414 Sum_probs=80.0
Q ss_pred CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe-CCc---e
Q 031166 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL-GGD---E 125 (164)
Q Consensus 50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~-~G~---~ 125 (164)
-.++++.|+|+|+|+++|..+++++.++..| +.|+|+|-.+++ ...|+.|.|+|...... .|- -
T Consensus 100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iC---s~C~GsGgksg~---------~~~C~~C~GsGv~~~~~~~gPg~~q 167 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMGKSKKLFLSRNFIC---SKCSGSGGKSGS---------APKCTTCRGSGVQTRTRQMGPGMVQ 167 (337)
T ss_pred CCCceEEEEEEHHHhhcCCccceecccCccC---CcCCCCCCCCCC---------CCCCCCCCCCCceeEEEeccccccc
Confidence 5799999999999999999999999999999 999999999876 23799999999977654 222 3
Q ss_pred eeeeeCCCCCcccee-----eCCCCcCceeec
Q 031166 126 REFSKCINCDGVGSL-----TCTTCQGTGIQP 152 (164)
Q Consensus 126 ~~~~~C~~C~G~Gki-----~C~~C~G~G~v~ 152 (164)
+.+..|..|+|+|.. .|+.|.|++.+.
T Consensus 168 s~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~ 199 (337)
T KOG0712|consen 168 SPQLVCDSCNGSGETISLKDRCKTCSGAKVVR 199 (337)
T ss_pred cceeEeccCCCccccccccccCcccccchhhh
Confidence 567789999999997 799999999976
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.3e-09 Score=91.01 Aligned_cols=92 Identities=26% Similarity=0.461 Sum_probs=78.4
Q ss_pred CcceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeee
Q 031166 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFS 129 (164)
Q Consensus 50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~ 129 (164)
|++..+...++|++|+.|..+.+.+.....| ..|.|.|++++. ....|..|+|+|.+.......|...
T Consensus 137 ~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~---~t~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~f~~~- 204 (288)
T KOG0715|consen 137 DKDQYYDLSLDFKEAVRGSKKRISFNVLSDC---ETCFGSGAEEGA--------KRESCKTCSGRGLVSNPKEDPFILY- 204 (288)
T ss_pred CcccccccccCHHHHhhccccceEEEeeccc---ccccCcCccccc--------ccccchhhhCcccccccccCCccee-
Confidence 3466677899999999999999999999999 999999998876 5779999999997766443445444
Q ss_pred eCCCCCcccee---eCCCCcCceeecc
Q 031166 130 KCINCDGVGSL---TCTTCQGTGIQPR 153 (164)
Q Consensus 130 ~C~~C~G~Gki---~C~~C~G~G~v~~ 153 (164)
+|..|.|.|.+ .|..|.|.|++..
T Consensus 205 ~~~~c~~~~~~~~~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 205 TCSYCLGRGLVLRDNCQACSGAGQVRR 231 (288)
T ss_pred ecccccccceeccchHHHhhcchhhhh
Confidence 99999999999 5999999997653
No 34
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.7e-07 Score=80.35 Aligned_cols=29 Identities=41% Similarity=0.891 Sum_probs=23.3
Q ss_pred eeeeCCCCCccceeeCCCCcCceeecccc
Q 031166 127 EFSKCINCDGVGSLTCTTCQGTGIQPRYL 155 (164)
Q Consensus 127 ~~~~C~~C~G~Gki~C~~C~G~G~v~~~l 155 (164)
...+|++|+|.|+++|.+|.|+|.+.+|.
T Consensus 244 G~~~C~tC~grG~k~C~TC~gtgsll~~t 272 (406)
T KOG2813|consen 244 GIKECHTCKGRGKKPCTTCSGTGSLLNYT 272 (406)
T ss_pred CcccCCcccCCCCcccccccCccceeeeE
Confidence 44678888888888899999999877654
No 35
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.13 E-value=9.3e-07 Score=84.19 Aligned_cols=65 Identities=26% Similarity=0.308 Sum_probs=49.7
Q ss_pred eCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeC------------CceeeeeeCCCCCcccee----e
Q 031166 78 IDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELG------------GDEREFSKCINCDGVGSL----T 141 (164)
Q Consensus 78 ~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~------------G~~~~~~~C~~C~G~Gki----~ 141 (164)
..| +.|+|+|...-+ .+.|+.|+|+|++..... ++...-.+|+.|+|.|++ +
T Consensus 3 ~~C---~~C~g~G~i~v~---------~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~ 70 (715)
T COG1107 3 KKC---PECGGKGKIVVG---------EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDT 70 (715)
T ss_pred ccc---cccCCCceEeee---------eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEee
Confidence 357 999999987432 458999999999843221 112234699999999999 6
Q ss_pred CCCCcCceeeccc
Q 031166 142 CTTCQGTGIQPRY 154 (164)
Q Consensus 142 C~~C~G~G~v~~~ 154 (164)
|+.|.|+|++-.|
T Consensus 71 c~~c~G~gkv~~c 83 (715)
T COG1107 71 CPECGGTGKVLTC 83 (715)
T ss_pred cccCCCceeEEee
Confidence 9999999998765
No 36
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.92 E-value=4.6e-06 Score=57.52 Aligned_cols=39 Identities=38% Similarity=0.876 Sum_probs=28.4
Q ss_pred cCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 108 CRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 108 C~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
|+.|+|+|... -....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 1 C~~C~G~G~~~------~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKP------GKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-S------TTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCC------CCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 88999999852 1245699999999998 599999999985
No 37
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=7.5e-06 Score=73.75 Aligned_cols=74 Identities=27% Similarity=0.555 Sum_probs=50.1
Q ss_pred eecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEE--------EEEe-CC----ceeeeeeCC
Q 031166 66 VGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSV--------TVEL-GG----DEREFSKCI 132 (164)
Q Consensus 66 ~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V--------~~~~-~G----~~~~~~~C~ 132 (164)
.|...++.|.....=..+..|.|.|+. .|+.|+|+|.- .... -| ...+...|-
T Consensus 173 ~~~~~~~~vphs~~v~~ch~c~gRG~~--------------vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~ 238 (406)
T KOG2813|consen 173 SGVAHPAVVPHSMIVTFCHACLGRGAM--------------VCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCY 238 (406)
T ss_pred cccccceeccchHhhhhhhcccCCCce--------------eccCcCCCCccccccCcceecccccCCCCCCCCccchhh
Confidence 344444444433322122899999977 89999999941 1110 11 134667899
Q ss_pred CCCccceeeCCCCcCceeecc
Q 031166 133 NCDGVGSLTCTTCQGTGIQPR 153 (164)
Q Consensus 133 ~C~G~Gki~C~~C~G~G~v~~ 153 (164)
+|+|+|+..|++|+|.|.++.
T Consensus 239 ~C~G~G~~~C~tC~grG~k~C 259 (406)
T KOG2813|consen 239 MCHGRGIKECHTCKGRGKKPC 259 (406)
T ss_pred hccCCCcccCCcccCCCCccc
Confidence 999999999999999999863
No 38
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=2.4e-05 Score=70.79 Aligned_cols=42 Identities=38% Similarity=0.916 Sum_probs=34.9
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-------------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-------------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-------------~C~~C~G~G~v~ 152 (164)
..+|++|+|+|.-. | ....+|++|+|+|.+ +|++|+|+|.+.
T Consensus 142 ~~~C~~C~GsGak~----g--t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i 196 (371)
T COG0484 142 SVTCSTCHGSGAKP----G--TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII 196 (371)
T ss_pred eeECCcCCCCCCCC----C--CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC
Confidence 34899999999853 2 255899999999975 699999999976
No 39
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.45 E-value=9.7e-05 Score=56.89 Aligned_cols=37 Identities=35% Similarity=0.798 Sum_probs=30.9
Q ss_pred CccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee------------eCCCCcCceeec
Q 031166 104 LRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL------------TCTTCQGTGIQP 152 (164)
Q Consensus 104 ~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki------------~C~~C~G~G~v~ 152 (164)
....|..|+|+|. .+|+.|+|.|.+ +|++|+|+|++.
T Consensus 40 ~~v~C~~C~GsG~------------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~ 88 (111)
T PLN03165 40 NTQPCFPCSGTGA------------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLT 88 (111)
T ss_pred cCCCCCCCCCCCC------------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceee
Confidence 3458999999997 279999998876 599999999754
No 40
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.26 E-value=0.00015 Score=65.05 Aligned_cols=42 Identities=33% Similarity=0.778 Sum_probs=34.3
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|.... ....+|+.|+|.|.+ +|+.|+|+|++.
T Consensus 173 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i 225 (392)
T PRK14279 173 PAPCTTCHGSGARPG------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII 225 (392)
T ss_pred cccCCCCccccccCC------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe
Confidence 348999999998531 134789999999986 699999999974
No 41
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.10 E-value=0.00023 Score=63.37 Aligned_cols=42 Identities=31% Similarity=0.831 Sum_probs=33.6
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|...- ....+|+.|+|+|.+ +|+.|+|+|.+.
T Consensus 149 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~ 205 (372)
T PRK14296 149 LTNCSKCFGSGAESN------SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII 205 (372)
T ss_pred eeccCCCCCCccCCC------CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee
Confidence 347999999998431 123679999999975 699999999974
No 42
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.07 E-value=0.00028 Score=62.84 Aligned_cols=42 Identities=31% Similarity=0.733 Sum_probs=33.4
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|... + ....+|+.|+|.|.+ +|+.|+|+|++.
T Consensus 139 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 195 (378)
T PRK14278 139 AVLCDRCHGKGTAG----D--SKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI 195 (378)
T ss_pred eccCCCCcCccCCC----C--CCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee
Confidence 34899999999743 1 234689999999964 699999999974
No 43
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.05 E-value=0.00028 Score=62.71 Aligned_cols=41 Identities=39% Similarity=0.912 Sum_probs=33.4
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|.-. + ....+|+.|+|.|.+ +|+.|+|+|++.
T Consensus 146 ~~C~~C~G~g~~~----~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 197 (372)
T PRK14300 146 VKCDTCHGSGSEK----G--ETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII 197 (372)
T ss_pred cccCCCCCcccCC----C--CCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe
Confidence 4899999999743 1 133689999999976 699999999985
No 44
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.03 E-value=0.0003 Score=62.79 Aligned_cols=42 Identities=38% Similarity=0.873 Sum_probs=33.3
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|... + ....+|+.|+|.|.+ +|+.|+|+|.+.
T Consensus 141 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 197 (377)
T PRK14298 141 AERCSTCSGTGAKP----G--TSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI 197 (377)
T ss_pred eccCCCCCCCcccC----C--CCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc
Confidence 34899999999742 2 134679999999965 599999999874
No 45
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.03 E-value=0.0003 Score=62.86 Aligned_cols=42 Identities=33% Similarity=0.774 Sum_probs=33.7
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|.-. + ....+|+.|+|+|.+ +|+.|+|+|++.
T Consensus 158 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 210 (391)
T PRK14284 158 YKSCDACSGSGANS----S--QGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI 210 (391)
T ss_pred eccCCCCcccccCC----C--CCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc
Confidence 34899999999742 1 134789999999984 799999999864
No 46
>PRK14286 chaperone protein DnaJ; Provisional
Probab=97.03 E-value=0.00032 Score=62.37 Aligned_cols=42 Identities=38% Similarity=0.847 Sum_probs=33.7
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|... + ....+|+.|+|.|.+ +|+.|+|+|++.
T Consensus 150 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 202 (372)
T PRK14286 150 LESCVDCNGSGASK----G--SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI 202 (372)
T ss_pred cccCCCCcCCCcCC----C--CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe
Confidence 34899999999842 1 123689999999976 699999999875
No 47
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.00092 Score=64.28 Aligned_cols=58 Identities=29% Similarity=0.648 Sum_probs=38.3
Q ss_pred eCCCCCCCeeeeccCCCcc---------CcccCCcC-ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-eCCCCc
Q 031166 78 IDNAYDFPIFGAGQARKYS---------AMLPLQWL-RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-TCTTCQ 146 (164)
Q Consensus 78 ~~Ca~~~~C~GsGa~~gs~---------~~~~~~~~-~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-~C~~C~ 146 (164)
..| +.|+|+|-...-. ..--+-.+ -..|+.|+|+|.|++ ..+|+.|+|+|++ +|..|.
T Consensus 19 e~c---~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v--------~~~c~~c~G~gkv~~c~~cG 87 (715)
T COG1107 19 EEC---PVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV--------YDTCPECGGTGKVLTCDICG 87 (715)
T ss_pred eec---ccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE--------EeecccCCCceeEEeecccc
Confidence 348 9999999762110 00000111 237999999999985 4789999999999 455553
No 48
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.98 E-value=0.00037 Score=62.03 Aligned_cols=41 Identities=29% Similarity=0.754 Sum_probs=33.4
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|.... ....+|+.|+|.|.+ +|+.|+|+|++.
T Consensus 145 ~~C~~C~G~G~~~~------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~ 196 (373)
T PRK14301 145 VTCDDCGGSGAAPG------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI 196 (373)
T ss_pred ccCCCCCCcccCCC------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec
Confidence 48999999998531 123679999999976 699999999874
No 49
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.97 E-value=0.00039 Score=61.62 Aligned_cols=42 Identities=40% Similarity=0.942 Sum_probs=33.5
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|... + ....+|+.|+|.|.+ +|+.|+|+|++.
T Consensus 152 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 208 (369)
T PRK14282 152 YETCPHCGGTGVEP----G--SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP 208 (369)
T ss_pred cccCCCCCccCCCC----C--CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC
Confidence 34899999999843 1 134689999999975 599999999874
No 50
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.96 E-value=0.00044 Score=61.16 Aligned_cols=42 Identities=33% Similarity=0.779 Sum_probs=33.7
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|..... ....|+.|+|.|.+ +|+.|+|+|++.
T Consensus 142 ~~~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK10767 142 LVTCDTCHGSGAKPGT------SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII 194 (371)
T ss_pred cccCCCCCCcccCCCC------CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC
Confidence 3489999999975311 23689999999986 599999999974
No 51
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.95 E-value=0.00039 Score=61.79 Aligned_cols=40 Identities=38% Similarity=0.874 Sum_probs=32.9
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|... + ...+|+.|+|.|.+ +|+.|.|+|++.
T Consensus 141 ~~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 191 (369)
T PRK14288 141 SVCESCDGTGAKD----K---ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII 191 (369)
T ss_pred ccCCCCCCcccCC----C---CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc
Confidence 3899999999743 2 23689999999976 599999999874
No 52
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.95 E-value=0.00036 Score=62.18 Aligned_cols=41 Identities=37% Similarity=0.897 Sum_probs=33.0
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|... + ....+|+.|+|.|.+ +|+.|+|+|.+.
T Consensus 147 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 202 (380)
T PRK14276 147 ATCHTCNGSGAKP----G--TSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI 202 (380)
T ss_pred ccCCCCcCcccCC----C--CCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence 4899999999742 1 234689999999975 599999999874
No 53
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.91 E-value=0.00046 Score=61.80 Aligned_cols=42 Identities=33% Similarity=0.892 Sum_probs=33.9
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|... + ....+|+.|+|.|.+ +|+.|+|+|.+.
T Consensus 166 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 218 (389)
T PRK14295 166 QAPCPACSGTGAKN----G--TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA 218 (389)
T ss_pred cccCCCCcccccCC----C--CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe
Confidence 34799999999853 1 234689999999975 699999999874
No 54
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.90 E-value=0.00042 Score=61.54 Aligned_cols=41 Identities=37% Similarity=0.767 Sum_probs=33.0
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|... + .....|+.|+|.|.+ +|+.|+|+|.+.
T Consensus 147 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~ 198 (365)
T PRK14285 147 MLCESCLGKKSEK----G--TSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII 198 (365)
T ss_pred ccCCCCCCcccCC----C--CCCccCCCccCceeEEecCceeEEeeecCCCCCccccc
Confidence 4899999999742 1 223679999999965 699999999874
No 55
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.90 E-value=0.00049 Score=61.24 Aligned_cols=41 Identities=37% Similarity=0.851 Sum_probs=33.2
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|... +. ...+|+.|+|.|.+ +|+.|+|+|.+.
T Consensus 149 ~~C~~C~G~G~~~----~~--~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 204 (380)
T PRK14297 149 ENCETCNGTGAKP----GT--SPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI 204 (380)
T ss_pred ccCCCcccccccC----CC--cCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence 4799999999852 21 24789999999965 599999999874
No 56
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.88 E-value=0.00045 Score=61.45 Aligned_cols=41 Identities=34% Similarity=0.813 Sum_probs=32.9
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|... -....+|+.|+|.|.+ +|+.|+|+|.+.
T Consensus 139 ~~C~~C~G~G~~~------~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 194 (371)
T PRK14287 139 ETCGTCHGSGAKP------GTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII 194 (371)
T ss_pred ccCCCCCCcccCC------CCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence 4899999999753 1234679999999964 599999999874
No 57
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.86 E-value=0.0005 Score=62.57 Aligned_cols=43 Identities=33% Similarity=0.707 Sum_probs=34.0
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeeccc
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQPRY 154 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~~~ 154 (164)
...|+.|+|+|.. .+ ...+|+.|+|.|.+ +|+.|+|+|++..+
T Consensus 150 ~~~C~~C~G~G~~----~~---~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~ 207 (421)
T PTZ00037 150 DVICANCEGHGGP----KD---AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE 207 (421)
T ss_pred cccccccCCCCCC----CC---CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc
Confidence 3489999999962 12 34689999999952 79999999998654
No 58
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.85 E-value=0.00056 Score=56.76 Aligned_cols=25 Identities=44% Similarity=0.930 Sum_probs=13.6
Q ss_pred eeeCCCCCcccee-----eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL-----TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki-----~C~~C~G~G~v~ 152 (164)
..+|+.|+|+|++ +|++|+|+|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence 3445555555554 266666666654
No 59
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.82 E-value=0.00055 Score=60.90 Aligned_cols=41 Identities=37% Similarity=0.903 Sum_probs=32.8
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|... + ....+|+.|+|.|.+ +|+.|+|+|.+.
T Consensus 144 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (376)
T PRK14280 144 ETCDTCHGSGAKP----G--TSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI 199 (376)
T ss_pred ccCCCCCCcccCC----C--CCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee
Confidence 4799999999743 1 134679999999964 699999999874
No 60
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.78 E-value=0.00074 Score=59.80 Aligned_cols=41 Identities=32% Similarity=0.756 Sum_probs=33.5
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|..... ...+|+.|+|.|.+ +|+.|+|+|++.
T Consensus 145 ~~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~ 196 (366)
T PRK14294 145 ETCEECHGSGCEPGT------SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI 196 (366)
T ss_pred ccCCCCCCccccCCC------CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec
Confidence 479999999985321 24689999999975 699999999974
No 61
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.76 E-value=0.00072 Score=60.38 Aligned_cols=42 Identities=31% Similarity=0.709 Sum_probs=33.6
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|...- ....+|+.|+|.|.+ +|+.|+|+|.+.
T Consensus 155 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 211 (386)
T PRK14277 155 FEKCDVCKGSGAKPG------SKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII 211 (386)
T ss_pred eccCCCCCCCCcCCC------CCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec
Confidence 348999999998531 124689999999975 599999999984
No 62
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.70 E-value=0.0008 Score=60.00 Aligned_cols=41 Identities=37% Similarity=0.775 Sum_probs=32.8
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceee
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQ 151 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v 151 (164)
...|+.|+|+|...- ....+|+.|+|.|.+ +|+.|+|+|.+
T Consensus 156 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 207 (382)
T PRK14291 156 YVPCEACGGTGYDPG------SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL 207 (382)
T ss_pred eccCCCCccccCCCC------CCCccCCCCCCceEEEEecceEEEEecCCCCCCceEE
Confidence 348999999997431 134679999999976 69999999965
No 63
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.70 E-value=0.00084 Score=58.85 Aligned_cols=42 Identities=38% Similarity=0.812 Sum_probs=33.3
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|.... ....+|+.|+|.|.+ +|+.|.|+|++.
T Consensus 143 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (354)
T TIGR02349 143 KESCETCHGTGAKPG------TDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII 199 (354)
T ss_pred CCcCCCCCCCCCCCC------CCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec
Confidence 348999999997531 124689999999964 599999999974
No 64
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.68 E-value=0.00075 Score=60.09 Aligned_cols=42 Identities=38% Similarity=0.805 Sum_probs=33.8
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|.... .....|+.|+|.|.+ +|+.|.|+|.+.
T Consensus 154 ~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~ 210 (386)
T PRK14289 154 YVPCSHCHGTGAEGN------NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII 210 (386)
T ss_pred ecccCCCCCCCCCCC------CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc
Confidence 348999999997532 234779999999886 599999999874
No 65
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.64 E-value=0.0011 Score=55.00 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=6.7
Q ss_pred ccCCCCcccEEEE
Q 031166 107 SCRFCMGTGSVTV 119 (164)
Q Consensus 107 tC~~C~GtG~V~~ 119 (164)
.|+.|+|+|++..
T Consensus 117 ~C~~C~G~G~v~~ 129 (186)
T TIGR02642 117 ECDTCAGTGRFRP 129 (186)
T ss_pred CCCCCCCccEEee
Confidence 4555555555443
No 66
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.64 E-value=0.00093 Score=59.18 Aligned_cols=40 Identities=43% Similarity=0.959 Sum_probs=32.6
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|.-. + ...+|+.|+|.|.+ +|+.|.|.|++.
T Consensus 150 ~~C~~C~G~g~~~----~---~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~ 204 (365)
T PRK14290 150 AMCPDCSGTGAKN----G---KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP 204 (365)
T ss_pred ccCCCCccccCCC----C---CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc
Confidence 4799999999732 2 34689999999952 799999999874
No 67
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.55 E-value=0.0011 Score=59.38 Aligned_cols=40 Identities=43% Similarity=0.929 Sum_probs=32.9
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|.-. + ...+|+.|+|.|.+ +|+.|+|+|++.
T Consensus 164 ~~C~~C~G~G~~~----~---~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 218 (397)
T PRK14281 164 VPCKECNGTGSKT----G---ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV 218 (397)
T ss_pred ecCCCCCCcccCC----C---CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee
Confidence 4799999999742 2 24689999999965 599999999874
No 68
>PRK14283 chaperone protein DnaJ; Provisional
Probab=96.48 E-value=0.0014 Score=58.26 Aligned_cols=41 Identities=37% Similarity=0.860 Sum_probs=33.0
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|... + ....+|+.|+|.|.+ +|.+|+|+|++.
T Consensus 147 ~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 202 (378)
T PRK14283 147 KKCPVCNGSRAEP----G--SEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV 202 (378)
T ss_pred ccCCCCCccccCC----C--CCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec
Confidence 4799999999743 1 134679999999885 599999999873
No 69
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.45 E-value=0.0018 Score=57.61 Aligned_cols=42 Identities=36% Similarity=0.844 Sum_probs=33.4
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|.-. + ....+|+.|+|.|.+ +|..|.|.|++.
T Consensus 143 ~~~C~~C~G~G~~~----~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 199 (374)
T PRK14293 143 LETCETCRGSGAKP----G--TGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI 199 (374)
T ss_pred cccCCCCCCcCCCC----C--CCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe
Confidence 34899999999743 1 133689999999974 599999999973
No 70
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.08 E-value=0.0027 Score=56.23 Aligned_cols=43 Identities=28% Similarity=0.709 Sum_probs=33.5
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|.-.- -....+|+.|+|.|.+ +|..|+|.|+..
T Consensus 139 ~~~C~~C~G~G~~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 196 (371)
T PRK14292 139 LTECEHCHGSRTEPG-----GKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII 196 (371)
T ss_pred eecCCCCcccccCCC-----CCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence 347999999997421 1124779999999976 499999999975
No 71
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.018 Score=50.76 Aligned_cols=48 Identities=27% Similarity=0.585 Sum_probs=38.5
Q ss_pred CCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeCCCCc
Q 031166 84 FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQ 146 (164)
Q Consensus 84 ~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C~~C~ 146 (164)
..|.|.+-. .|..|||+=++..+ ........+|+.|+-.|-+.|+.|.
T Consensus 233 ~~CGg~rFl--------------pC~~C~GS~kv~~~-~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 233 ESCGGARFL--------------PCSNCHGSCKVHEE-EEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCcCCcceE--------------ecCCCCCceeeeee-ccCCCcEEECcccCCCCceeCCccC
Confidence 666666665 79999999998773 2334566899999999999999996
No 72
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.79 E-value=0.027 Score=44.80 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=33.2
Q ss_pred CCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeC
Q 031166 84 FPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTC 142 (164)
Q Consensus 84 ~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C 142 (164)
..|.|.+-. .|..|+|+=++............+|+.|+-.|-+.|
T Consensus 103 ~~Cgg~rfv--------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 103 EGCGGARFV--------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCcCeE--------------ECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 888888777 799999999987654212334578888888887765
No 73
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=93.69 E-value=0.028 Score=48.52 Aligned_cols=28 Identities=43% Similarity=0.685 Sum_probs=23.2
Q ss_pred eeeeeCCCCCccceeeCCCCcCceeecc
Q 031166 126 REFSKCINCDGVGSLTCTTCQGTGIQPR 153 (164)
Q Consensus 126 ~~~~~C~~C~G~Gki~C~~C~G~G~v~~ 153 (164)
....+|..-.|.+.++||+|+|+|+|++
T Consensus 25 ~~~~py~e~~g~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 25 ISSFPYVEFTGRDSVTCPTCQGTGRIPR 52 (238)
T ss_pred cccCccccccCCCCCcCCCCcCCccCCc
Confidence 3456777788889999999999999985
No 74
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.17 E-value=0.15 Score=51.10 Aligned_cols=38 Identities=24% Similarity=0.555 Sum_probs=22.0
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeCCCCcCceeecccc
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRYL 155 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C~~C~G~G~v~~~l 155 (164)
.|+.|.|.|++.......... .++|+.|+|+.+.+.-|
T Consensus 738 ~C~~C~G~G~~~~~~~f~~~~-----------~~~C~~C~G~R~~~e~l 775 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFLPDV-----------YVPCEVCKGKRYNRETL 775 (924)
T ss_pred CCCCCccceEEEEEccCCCCc-----------ccCCCCcCCceeChHHH
Confidence 577888888777654111111 23577777776665443
No 75
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=89.22 E-value=0.25 Score=49.57 Aligned_cols=37 Identities=22% Similarity=0.573 Sum_probs=21.2
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeCCCCcCceeeccc
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGIQPRY 154 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C~~C~G~G~v~~~ 154 (164)
.|+.|.|.|.+............ +|+.|+|+.+.+.-
T Consensus 740 ~C~~C~G~G~~~~~~~f~~~~~~-----------~C~~C~G~R~~~e~ 776 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLPDVYV-----------PCDVCKGKRYNRET 776 (943)
T ss_pred CCCcccccceEEEEeccCCCccc-----------cCccccCccccccc
Confidence 48888888887765411111222 56666666665543
No 76
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.56 E-value=0.25 Score=49.55 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=7.8
Q ss_pred ccCCCCcccEEE
Q 031166 107 SCRFCMGTGSVT 118 (164)
Q Consensus 107 tC~~C~GtG~V~ 118 (164)
.|+.|.|.|.+.
T Consensus 276 ~Cp~C~G~G~~~ 287 (924)
T TIGR00630 276 ACPECSGLGIKQ 287 (924)
T ss_pred CCCCCccceeee
Confidence 477777777653
No 77
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.55 E-value=0.3 Score=44.15 Aligned_cols=50 Identities=24% Similarity=0.454 Sum_probs=30.1
Q ss_pred CCeeeeccCCCccCccc-C-CcCccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee
Q 031166 84 FPIFGAGQARKYSAMLP-L-QWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL 140 (164)
Q Consensus 84 ~~C~GsGa~~gs~~~~~-~-~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki 140 (164)
..|.|+|.+.....+-+ | +..-..|..|+|+|.. +...-.|+.|.|.+.+
T Consensus 147 ~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~-------~~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 147 TTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGET-------ISLKDRCKTCSGAKVV 198 (337)
T ss_pred CCCCCCCceeEEEeccccccccceeEeccCCCcccc-------ccccccCcccccchhh
Confidence 77888887643322211 1 1123468888888875 2234678888888876
No 78
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=85.34 E-value=0.54 Score=50.39 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=11.6
Q ss_pred ccCCCCcccEEEEEe
Q 031166 107 SCRFCMGTGSVTVEL 121 (164)
Q Consensus 107 tC~~C~GtG~V~~~~ 121 (164)
.|+.|.|.|++....
T Consensus 1609 rC~~C~G~G~i~i~m 1623 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDR 1623 (1809)
T ss_pred CCCCCccCceEEEec
Confidence 588888888887764
No 79
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=84.75 E-value=0.79 Score=46.21 Aligned_cols=30 Identities=27% Similarity=0.668 Sum_probs=18.6
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCc
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDG 136 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G 136 (164)
.|..|.|.|.+.++...--..+.+|+.|+|
T Consensus 732 RCe~C~GdG~ikIeM~FLpdVyv~CevC~G 761 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLPDVYVPCEVCHG 761 (935)
T ss_pred CCccccCCceEEEEeccCCCceeeCCCcCC
Confidence 688888888877765333334555555555
No 80
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=82.23 E-value=1 Score=35.82 Aligned_cols=12 Identities=25% Similarity=0.839 Sum_probs=6.7
Q ss_pred eCCCCcCceeec
Q 031166 141 TCTTCQGTGIQP 152 (164)
Q Consensus 141 ~C~~C~G~G~v~ 152 (164)
.|+.|+=.|.++
T Consensus 135 rC~~Cnengl~~ 146 (147)
T cd03031 135 RCPECNENGLVR 146 (147)
T ss_pred ECCCCCcccccc
Confidence 466666555543
No 81
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=82.07 E-value=0.69 Score=46.55 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=9.7
Q ss_pred ccCCCCcccEEEE
Q 031166 107 SCRFCMGTGSVTV 119 (164)
Q Consensus 107 tC~~C~GtG~V~~ 119 (164)
.|+.|+|.|.+..
T Consensus 278 ~Cp~C~G~G~~~~ 290 (943)
T PRK00349 278 ACPTCDGLGVKLE 290 (943)
T ss_pred CCCcCCCceeEee
Confidence 5888888887654
No 82
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=80.80 E-value=2.8 Score=27.65 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=9.5
Q ss_pred ccCCCCcccEE
Q 031166 107 SCRFCMGTGSV 117 (164)
Q Consensus 107 tC~~C~GtG~V 117 (164)
.||+|+|....
T Consensus 3 PCPfCGg~~~~ 13 (53)
T TIGR03655 3 PCPFCGGADVY 13 (53)
T ss_pred CCCCCCCccee
Confidence 69999998883
No 83
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=79.56 E-value=0.74 Score=39.91 Aligned_cols=15 Identities=40% Similarity=0.868 Sum_probs=12.5
Q ss_pred ccCCCCcccEEEEEe
Q 031166 107 SCRFCMGTGSVTVEL 121 (164)
Q Consensus 107 tC~~C~GtG~V~~~~ 121 (164)
+||+|+|+|+|.+++
T Consensus 40 tCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 40 TCPTCQGTGRIPREQ 54 (238)
T ss_pred cCCCCcCCccCCccc
Confidence 899999999987654
No 84
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=78.09 E-value=3.1 Score=27.47 Aligned_cols=16 Identities=31% Similarity=0.783 Sum_probs=12.2
Q ss_pred ccccCCCCcccEEEEEe
Q 031166 105 RCSCRFCMGTGSVTVEL 121 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~ 121 (164)
.+.||+| |...+....
T Consensus 3 LkPCPFC-G~~~~~~~~ 18 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQ 18 (61)
T ss_pred CcCCCCC-CCcceEeec
Confidence 4579999 888777654
No 85
>PF14353 CpXC: CpXC protein
Probab=74.59 E-value=3.6 Score=30.98 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=21.7
Q ss_pred ccCCCCcccEEEEEe---------------CCceeeeeeCCCCCcccee
Q 031166 107 SCRFCMGTGSVTVEL---------------GGDEREFSKCINCDGVGSL 140 (164)
Q Consensus 107 tC~~C~GtG~V~~~~---------------~G~~~~~~~C~~C~G~Gki 140 (164)
+||.|+..+.+.+-. .|.+ ...+||.|+..+.+
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l-~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSL-FSFTCPSCGHKFRL 50 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCc-CEEECCCCCCceec
Confidence 799999999977632 1222 34567777666655
No 86
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.96 E-value=2.5 Score=37.54 Aligned_cols=24 Identities=29% Similarity=0.758 Sum_probs=20.3
Q ss_pred eeCCCCCccceeeCCCCcCceeec
Q 031166 129 SKCINCDGVGSLTCTTCQGTGIQP 152 (164)
Q Consensus 129 ~~C~~C~G~Gki~C~~C~G~G~v~ 152 (164)
..|..|+|.+.++|..|+|+-++.
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~kv~ 253 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCKVH 253 (281)
T ss_pred CcCCCcCCcceEecCCCCCceeee
Confidence 578889999999999999888765
No 87
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=72.62 E-value=1.6 Score=46.94 Aligned_cols=26 Identities=42% Similarity=0.882 Sum_probs=17.7
Q ss_pred eCCCCCcccee------------eCCCCcCceeecccc
Q 031166 130 KCINCDGVGSL------------TCTTCQGTGIQPRYL 155 (164)
Q Consensus 130 ~C~~C~G~Gki------------~C~~C~G~G~v~~~l 155 (164)
.|+.|.|.|.+ +|+.|+|+.+.+.-|
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L 1646 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQ 1646 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHH
Confidence 47777777776 477777777665443
No 88
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=72.34 E-value=1.8 Score=37.74 Aligned_cols=43 Identities=33% Similarity=0.813 Sum_probs=33.4
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeecc
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQPR 153 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~~ 153 (164)
...|.+|.|.|... ......|..|.|.|.+ +|..|.|.|.+..
T Consensus 164 ~~~~~t~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~ 217 (288)
T KOG0715|consen 164 LSDCETCFGSGAEE------GAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR 217 (288)
T ss_pred ecccccccCcCccc------ccccccchhhhCcccccccccCCcceeecccccccceecc
Confidence 34899999999322 2356889999999933 4999999998753
No 89
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=67.36 E-value=2.2 Score=26.44 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=17.8
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCC
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCD 135 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~ 135 (164)
+|+.|+..-.|...+...-....+|+.|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~ 32 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCG 32 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCC
Confidence 78888887777655433333355666664
No 90
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=66.80 E-value=3.1 Score=42.14 Aligned_cols=34 Identities=26% Similarity=0.629 Sum_probs=26.1
Q ss_pred Cceeeee---eCCCCCcccee------------eCCCCcCceeeccccC
Q 031166 123 GDEREFS---KCINCDGVGSL------------TCTTCQGTGIQPRYLD 156 (164)
Q Consensus 123 G~~~~~~---~C~~C~G~Gki------------~C~~C~G~G~v~~~l~ 156 (164)
|.|+..+ +|..|+|.|.+ +|..|+|+-+-+.=|+
T Consensus 722 grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~EtLe 770 (935)
T COG0178 722 GRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLE 770 (935)
T ss_pred ccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccccceEE
Confidence 4455554 59999999998 6999999987665444
No 91
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=60.59 E-value=3.3 Score=30.88 Aligned_cols=33 Identities=33% Similarity=0.605 Sum_probs=21.9
Q ss_pred ccCCCCcccEEEEE----eCCceeeeeeCCCCCccce
Q 031166 107 SCRFCMGTGSVTVE----LGGDEREFSKCINCDGVGS 139 (164)
Q Consensus 107 tC~~C~GtG~V~~~----~~G~~~~~~~C~~C~G~Gk 139 (164)
.|..|+|.|.+.-. ..+++.....|..|.|.|-
T Consensus 7 ~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~ 43 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGY 43 (95)
T ss_pred CcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCC
Confidence 79999999965331 1223666677777777774
No 92
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.68 E-value=7.7 Score=29.09 Aligned_cols=10 Identities=20% Similarity=0.292 Sum_probs=6.2
Q ss_pred ccCCCCcccE
Q 031166 107 SCRFCMGTGS 116 (164)
Q Consensus 107 tC~~C~GtG~ 116 (164)
.||.|+-.=+
T Consensus 3 lCP~C~v~l~ 12 (88)
T COG3809 3 LCPICGVELV 12 (88)
T ss_pred ccCcCCceee
Confidence 5777766443
No 93
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=54.02 E-value=15 Score=22.62 Aligned_cols=26 Identities=35% Similarity=0.707 Sum_probs=16.7
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCC
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCD 135 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~ 135 (164)
...|..|+|.|-+...+ ....|+.|+
T Consensus 3 ~~~C~~C~~~~i~~~~~-----~~~~C~~Cg 28 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNKED-----DYEVCIFCG 28 (33)
T ss_pred ceEcCCCCCCeEEEecC-----CeEEcccCC
Confidence 34788888888774333 345566664
No 94
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=53.56 E-value=16 Score=22.72 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=4.4
Q ss_pred cCCCCc
Q 031166 108 CRFCMG 113 (164)
Q Consensus 108 C~~C~G 113 (164)
||.|+.
T Consensus 2 CP~C~~ 7 (41)
T PF13453_consen 2 CPRCGT 7 (41)
T ss_pred cCCCCc
Confidence 777766
No 95
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=53.20 E-value=6 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=16.0
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCc
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDG 136 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G 136 (164)
+|+.|+-.=++.....+.-.....|++|+.
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 688887765555433221112455666654
No 96
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=51.84 E-value=12 Score=32.45 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=24.7
Q ss_pred CcceEEEEEEeceeeeeecceEEEEEeee
Q 031166 50 DQNTVVAISVGLVSVAVGIGIPIFYETQI 78 (164)
Q Consensus 50 ~~~T~v~i~i~f~eaa~G~~~~i~~e~~~ 78 (164)
.+|-.+.+.|+|+|++.|..+.|.+++.+
T Consensus 117 g~di~~~v~isLee~~~G~~k~i~~~~~~ 145 (306)
T PRK10266 117 GHDIEIEVAVFLEETLTEHKRTISYNLPV 145 (306)
T ss_pred CCceEEEEEEEHHHhcCCceEEEEEeccc
Confidence 35778999999999999999999887743
No 97
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=51.71 E-value=14 Score=22.97 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=14.0
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCC
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCD 135 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~ 135 (164)
-|+.|++.=.. ...-|.-++...|+.|+
T Consensus 2 fC~~CG~~l~~-~ip~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 2 FCPQCGGPLER-RIPEGDDRERLVCPACG 29 (34)
T ss_dssp B-TTT--B-EE-E--TT-SS-EEEETTTT
T ss_pred ccccccChhhh-hcCCCCCccceECCCCC
Confidence 48999887222 22346777888888886
No 98
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=50.41 E-value=10 Score=23.83 Aligned_cols=9 Identities=22% Similarity=0.567 Sum_probs=6.3
Q ss_pred ccCCCCccc
Q 031166 107 SCRFCMGTG 115 (164)
Q Consensus 107 tC~~C~GtG 115 (164)
+|+.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 577777755
No 99
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=50.31 E-value=8.4 Score=26.91 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.5
Q ss_pred EEEEEEeceeeeeecceEE
Q 031166 54 VVAISVGLVSVAVGIGIPI 72 (164)
Q Consensus 54 ~v~i~i~f~eaa~G~~~~i 72 (164)
.+.+.|+|.||+.|.+++|
T Consensus 3 ~~~~~I~l~~al~G~~i~i 21 (81)
T PF01556_consen 3 YCTIPISLKEALLGGTISI 21 (81)
T ss_dssp EEEEEEEHHHHHH-EEEEE
T ss_pred EEEEEeCHHHHhCCCEEEE
Confidence 5789999999999999888
No 100
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.24 E-value=9.9 Score=39.39 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=39.3
Q ss_pred eceeeee-ecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCccc
Q 031166 60 GLVSVAV-GIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVG 138 (164)
Q Consensus 60 ~f~eaa~-G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~G 138 (164)
++.+|+. +..++|++... .| +.|.-.+.. ..|+.|+.. + .....|+.|.-.+
T Consensus 609 ~i~~A~~~~g~~eVEVg~R-fC---psCG~~t~~-------------frCP~CG~~---T-------e~i~fCP~CG~~~ 661 (1121)
T PRK04023 609 DINKAAKYKGTIEVEIGRR-KC---PSCGKETFY-------------RRCPFCGTH---T-------EPVYRCPRCGIEV 661 (1121)
T ss_pred cHHHHHhcCCceeecccCc-cC---CCCCCcCCc-------------ccCCCCCCC---C-------CcceeCccccCcC
Confidence 3556666 45455555442 36 677655322 379999886 1 1335799996655
Q ss_pred ee-eCCCCcCcee
Q 031166 139 SL-TCTTCQGTGI 150 (164)
Q Consensus 139 ki-~C~~C~G~G~ 150 (164)
.. .|+.|.-.-.
T Consensus 662 ~~y~CPKCG~El~ 674 (1121)
T PRK04023 662 EEDECEKCGREPT 674 (1121)
T ss_pred CCCcCCCCCCCCC
Confidence 43 7999986543
No 101
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=47.69 E-value=28 Score=31.19 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=7.9
Q ss_pred CccccCCCCccc
Q 031166 104 LRCSCRFCMGTG 115 (164)
Q Consensus 104 ~~~tC~~C~GtG 115 (164)
....||.|++.=
T Consensus 186 ~~~~CPvCGs~P 197 (309)
T PRK03564 186 QRQFCPVCGSMP 197 (309)
T ss_pred CCCCCCCCCCcc
Confidence 344788887763
No 102
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=46.78 E-value=13 Score=23.84 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=7.8
Q ss_pred ccCCCCcccEEEE
Q 031166 107 SCRFCMGTGSVTV 119 (164)
Q Consensus 107 tC~~C~GtG~V~~ 119 (164)
.||.|.|+....+
T Consensus 5 pCP~CGG~DrFri 17 (40)
T PF08273_consen 5 PCPICGGKDRFRI 17 (40)
T ss_dssp --TTTT-TTTEEE
T ss_pred CCCCCcCcccccc
Confidence 6888888887764
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=44.42 E-value=20 Score=35.59 Aligned_cols=86 Identities=14% Similarity=0.284 Sum_probs=56.1
Q ss_pred CCCCcchhc-cCCcceEEE---EEEeceeee-----eecceEEEEEe-----eeCCCCCCCeeeeccCCCccCcccCCcC
Q 031166 39 SAPYPCIRA-ELDQNTVVA---ISVGLVSVA-----VGIGIPIFYET-----QIDNAYDFPIFGAGQARKYSAMLPLQWL 104 (164)
Q Consensus 39 ~~~~~~~~~-dl~~~T~v~---i~i~f~eaa-----~G~~~~i~~e~-----~~~Ca~~~~C~GsGa~~gs~~~~~~~~~ 104 (164)
.+..|++.. |+.++.... ++-.|.+++ .|...=|++.+ .+.| ..|. .
T Consensus 383 ~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C---~~Cg----------------~ 443 (730)
T COG1198 383 RARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLC---RDCG----------------Y 443 (730)
T ss_pred ccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeec---ccCC----------------C
Confidence 455777777 666654444 444444443 55555666554 5667 7775 2
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee--eCCCCcCc
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTTCQGT 148 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki--~C~~C~G~ 148 (164)
+-.|+.|...=.... ....-.|..|+=...+ .|+.|++.
T Consensus 444 v~~Cp~Cd~~lt~H~-----~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 444 IAECPNCDSPLTLHK-----ATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred cccCCCCCcceEEec-----CCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 348999998633322 2256789999999777 59999988
No 104
>PRK14299 chaperone protein DnaJ; Provisional
Probab=43.93 E-value=14 Score=31.89 Aligned_cols=26 Identities=8% Similarity=-0.034 Sum_probs=22.7
Q ss_pred cceEEEEEEeceeeeeecceEEEEEe
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYET 76 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~ 76 (164)
+|..+.+.|+|+||+.|..+.|.+..
T Consensus 130 ~dl~~~l~isL~ea~~G~~~~i~l~g 155 (291)
T PRK14299 130 RDLEAELPLTLEEAYRGGEKVVEVAG 155 (291)
T ss_pred CCEEEEEEecHHHHhCCCeEEEeeCC
Confidence 47889999999999999999987753
No 105
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=43.19 E-value=35 Score=27.58 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=21.3
Q ss_pred ccCCCCcccEEEEEe-----CCc-eeeeeeCCCCCcc
Q 031166 107 SCRFCMGTGSVTVEL-----GGD-EREFSKCINCDGV 137 (164)
Q Consensus 107 tC~~C~GtG~V~~~~-----~G~-~~~~~~C~~C~G~ 137 (164)
.|+.|+..|...... |+. +-+.-.|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk 38 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYR 38 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCc
Confidence 599999999855432 443 3456679998764
No 106
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.07 E-value=19 Score=33.65 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=27.4
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee--eCCCCcCc
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTTCQGT 148 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki--~C~~C~G~ 148 (164)
..|+.|.+.=..... ...-.|..|+-.=.+ .|+.|++.
T Consensus 223 ~~C~~C~~~l~~h~~-----~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 223 LCCPNCDVSLTYHKK-----EGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred cCCCCCCCceEEecC-----CCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 379999875333322 235789999988777 69999875
No 107
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=43.02 E-value=18 Score=38.32 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=36.5
Q ss_pred eecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCcc------ce
Q 031166 66 VGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGV------GS 139 (164)
Q Consensus 66 ~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~------Gk 139 (164)
.+..+++++. ...| +.|...... ..|+.|+..=. ....|+.|+.. |.
T Consensus 657 ~~G~ieVEV~-~rkC---PkCG~~t~~-------------~fCP~CGs~te----------~vy~CPsCGaev~~des~a 709 (1337)
T PRK14714 657 EGGVIEVEVG-RRRC---PSCGTETYE-------------NRCPDCGTHTE----------PVYVCPDCGAEVPPDESGR 709 (1337)
T ss_pred cCCeEEEEEE-EEEC---CCCCCcccc-------------ccCcccCCcCC----------CceeCccCCCccCCCcccc
Confidence 4445555554 4568 889865332 27999987621 12479999873 33
Q ss_pred eeCCCCcCcee
Q 031166 140 LTCTTCQGTGI 150 (164)
Q Consensus 140 i~C~~C~G~G~ 150 (164)
..|+.|+-.-.
T Consensus 710 ~~CP~CGtplv 720 (1337)
T PRK14714 710 VECPRCDVELT 720 (1337)
T ss_pred ccCCCCCCccc
Confidence 47999985433
No 108
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=42.74 E-value=15 Score=23.29 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.4
Q ss_pred ccCCCCcccEEE
Q 031166 107 SCRFCMGTGSVT 118 (164)
Q Consensus 107 tC~~C~GtG~V~ 118 (164)
.||.|.|+....
T Consensus 5 pCP~CGG~DrFr 16 (37)
T smart00778 5 PCPNCGGSDRFR 16 (37)
T ss_pred CCCCCCCccccc
Confidence 688888887765
No 109
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=42.26 E-value=7.3 Score=35.04 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=21.1
Q ss_pred ccccCCCCcccEEEEEeCC-c----------------eeeeeeCCCCCcccee
Q 031166 105 RCSCRFCMGTGSVTVELGG-D----------------EREFSKCINCDGVGSL 140 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G-~----------------~~~~~~C~~C~G~Gki 140 (164)
.+.||.|++.=.....++| . -.....|.+|+-++++
T Consensus 185 ~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t~~l 237 (308)
T COG3058 185 RQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQSKKL 237 (308)
T ss_pred cccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhccccccCCc
Confidence 3468888887665554433 1 1134567777776665
No 110
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=40.27 E-value=17 Score=36.84 Aligned_cols=29 Identities=17% Similarity=-0.014 Sum_probs=26.3
Q ss_pred ceEEEEEEeceeeeeecceEEEEEeeeCC
Q 031166 52 NTVVAISVGLVSVAVGIGIPIFYETQIDN 80 (164)
Q Consensus 52 ~T~v~i~i~f~eaa~G~~~~i~~e~~~~C 80 (164)
+-.+.|.|+|+++++|..++|+|.+.+.|
T Consensus 658 dI~y~l~vtLEeLY~G~tKkIKitR~V~~ 686 (871)
T TIGR03835 658 NLVYEEEVPQILFFNNQIKEIKYTRHTVD 686 (871)
T ss_pred ceEEecccCHHHHhCCCeEEEEEEEeecc
Confidence 56788899999999999999999998876
No 111
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=39.51 E-value=13 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=15.2
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCC
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCD 135 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~ 135 (164)
+|+.|+-.=.|...+...-.....|++|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~ 32 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCG 32 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCC
Confidence 67777766555544322222345566664
No 112
>PRK05580 primosome assembly protein PriA; Validated
Probab=39.02 E-value=21 Score=34.51 Aligned_cols=58 Identities=16% Similarity=0.311 Sum_probs=38.6
Q ss_pred ecceEEEEEe-----eeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-
Q 031166 67 GIGIPIFYET-----QIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL- 140 (164)
Q Consensus 67 G~~~~i~~e~-----~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki- 140 (164)
|...=|++.+ .+.| ..|. ....|+.|.+.=.... ....-.|..|+-.-.+
T Consensus 366 g~qvll~~nrrGy~~~~~C---~~Cg----------------~~~~C~~C~~~l~~h~-----~~~~l~Ch~Cg~~~~~~ 421 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLC---RDCG----------------WVAECPHCDASLTLHR-----FQRRLRCHHCGYQEPIP 421 (679)
T ss_pred CCeEEEEEcCCCCCCceEh---hhCc----------------CccCCCCCCCceeEEC-----CCCeEECCCCcCCCCCC
Confidence 4445555554 6777 7776 2347999998322221 2345789999988776
Q ss_pred -eCCCCcCc
Q 031166 141 -TCTTCQGT 148 (164)
Q Consensus 141 -~C~~C~G~ 148 (164)
.|+.|++.
T Consensus 422 ~~Cp~Cg~~ 430 (679)
T PRK05580 422 KACPECGST 430 (679)
T ss_pred CCCCCCcCC
Confidence 69999876
No 113
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=38.26 E-value=19 Score=32.57 Aligned_cols=24 Identities=38% Similarity=0.917 Sum_probs=18.7
Q ss_pred eeeeeeCCCCCccceeeCCCCcCceee
Q 031166 125 EREFSKCINCDGVGSLTCTTCQGTGIQ 151 (164)
Q Consensus 125 ~~~~~~C~~C~G~Gki~C~~C~G~G~v 151 (164)
+.....|..|+|.| |..|+++|.+
T Consensus 257 ~Evdv~~~~~~g~g---c~~ck~~~Wi 280 (339)
T PRK00488 257 AEVDVSCFKCGGKG---CRVCKGTGWL 280 (339)
T ss_pred eEEEEEEeccCCCc---ccccCCCCce
Confidence 34556799999887 9999999843
No 114
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=38.23 E-value=16 Score=33.57 Aligned_cols=14 Identities=43% Similarity=0.869 Sum_probs=11.6
Q ss_pred cccCCCCcccEEEE
Q 031166 106 CSCRFCMGTGSVTV 119 (164)
Q Consensus 106 ~tC~~C~GtG~V~~ 119 (164)
..|+.|+|+|+|..
T Consensus 391 ~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 391 TVCPHCSGTGIVKT 404 (414)
T ss_pred CCCCCCcCeeEEcc
Confidence 47999999999854
No 115
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=38.03 E-value=39 Score=28.99 Aligned_cols=50 Identities=24% Similarity=0.560 Sum_probs=17.1
Q ss_pred CCcCccccCCCCcccEEEEEeCCc--eeeeeeCCCCCcccee---eCCCCcCcee
Q 031166 101 LQWLRCSCRFCMGTGSVTVELGGD--EREFSKCINCDGVGSL---TCTTCQGTGI 150 (164)
Q Consensus 101 ~~~~~~tC~~C~GtG~V~~~~~G~--~~~~~~C~~C~G~Gki---~C~~C~G~G~ 150 (164)
.+|....||.|++.=.+.+...+. -..+-.|+-|+-.=.. .|+.|.-+..
T Consensus 168 ~~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~ 222 (290)
T PF04216_consen 168 EGWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDH 222 (290)
T ss_dssp --TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS
T ss_pred CCccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCC
Confidence 345566899999875554443221 1244455555543322 4555544433
No 116
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=37.58 E-value=67 Score=20.13 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=19.2
Q ss_pred ccCCCCcccEEEEEe-----CCceeeeeeCCCCC
Q 031166 107 SCRFCMGTGSVTVEL-----GGDEREFSKCINCD 135 (164)
Q Consensus 107 tC~~C~GtG~V~~~~-----~G~~~~~~~C~~C~ 135 (164)
.|+.|+...-+-.+. .-.+...-.|.+|+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 699998777764432 12366777788776
No 117
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=36.44 E-value=30 Score=26.17 Aligned_cols=29 Identities=24% Similarity=0.595 Sum_probs=16.0
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeCCCCc
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQ 146 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C~~C~ 146 (164)
...|+.|+ .-.+.+.. +. |.+.+.|+.|+
T Consensus 21 ~f~CP~Cg-e~~v~v~~-~k-----------~~~h~~C~~CG 49 (99)
T PRK14892 21 IFECPRCG-KVSISVKI-KK-----------NIAIITCGNCG 49 (99)
T ss_pred EeECCCCC-CeEeeeec-CC-----------CcceEECCCCC
Confidence 45788888 33333221 21 45666677775
No 118
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=36.25 E-value=32 Score=34.92 Aligned_cols=56 Identities=25% Similarity=0.460 Sum_probs=35.7
Q ss_pred CccccCCCCcc--cEEEEEeCCceeeeeeCCCCCccc--ee----eCCCCcCceeeccccCCCcccC
Q 031166 104 LRCSCRFCMGT--GSVTVELGGDEREFSKCINCDGVG--SL----TCTTCQGTGIQPRYLDRREFKD 162 (164)
Q Consensus 104 ~~~tC~~C~Gt--G~V~~~~~G~~~~~~~C~~C~G~G--ki----~C~~C~G~G~v~~~l~~~~~~~ 162 (164)
...+|+.||-. |.....--.....+.+|..|.-.- .- .||.|.|. ..||+|+...|
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 858 (1006)
T PRK12775 795 GVATCPKCHRPLEGDEEYVCCATSELQWRCDDCGKVSEGFAFPYGMCPACGGK---LQALDRRKVED 858 (1006)
T ss_pred CCccCcccCCCCCCCceeEEecCcceeeehhhhccccccccCCcCcCcccccc---hhhhhccCccc
Confidence 34589999853 221111111244678999996432 22 59999987 78999987665
No 119
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.73 E-value=31 Score=30.82 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=23.7
Q ss_pred CccccCCCCcccEEEEEeCC---ceeeeeeCCCCCcccee---eCCCCcCcee
Q 031166 104 LRCSCRFCMGTGSVTVELGG---DEREFSKCINCDGVGSL---TCTTCQGTGI 150 (164)
Q Consensus 104 ~~~tC~~C~GtG~V~~~~~G---~~~~~~~C~~C~G~Gki---~C~~C~G~G~ 150 (164)
....||.|++.=...+...| .-..+-.|+-|.-.=.. .|+.|.-+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~ 235 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESKH 235 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCCc
Confidence 34478888776432221111 12234556666655444 5666655443
No 120
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=35.31 E-value=44 Score=26.92 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=17.6
Q ss_pred ccCCCCcccEEEEEe-----CCc-eeeeeeCCCCCcc
Q 031166 107 SCRFCMGTGSVTVEL-----GGD-EREFSKCINCDGV 137 (164)
Q Consensus 107 tC~~C~GtG~V~~~~-----~G~-~~~~~~C~~C~G~ 137 (164)
.|+.|+..|...... |+. +-+.-.|+.|+=+
T Consensus 3 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk 39 (161)
T PF03367_consen 3 LCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYK 39 (161)
T ss_dssp E-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--E
T ss_pred cCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCE
Confidence 699999999865532 443 3345578888653
No 121
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=34.94 E-value=63 Score=23.01 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=10.1
Q ss_pred CccccCCCCcccEEE
Q 031166 104 LRCSCRFCMGTGSVT 118 (164)
Q Consensus 104 ~~~tC~~C~GtG~V~ 118 (164)
..+.||+|...=...
T Consensus 5 ~lKPCPFCG~~~~~v 19 (64)
T PRK09710 5 NVKPCPFCGCPSVTV 19 (64)
T ss_pred cccCCCCCCCceeEE
Confidence 356899998754433
No 122
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=34.62 E-value=18 Score=33.34 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=6.9
Q ss_pred eeCCCCCcccee
Q 031166 129 SKCINCDGVGSL 140 (164)
Q Consensus 129 ~~C~~C~G~Gki 140 (164)
.+||.|+|+|.+
T Consensus 391 ~~Cp~C~G~G~v 402 (414)
T TIGR00757 391 TVCPHCSGTGIV 402 (414)
T ss_pred CCCCCCcCeeEE
Confidence 456666666554
No 123
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=34.59 E-value=65 Score=20.04 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=18.1
Q ss_pred ccCCCCcccEEEEEe-----CCceeeeeeCCCCC
Q 031166 107 SCRFCMGTGSVTVEL-----GGDEREFSKCINCD 135 (164)
Q Consensus 107 tC~~C~GtG~V~~~~-----~G~~~~~~~C~~C~ 135 (164)
.|+.|+....+..+. -..+...-.|.+|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 699999988776643 12366777788886
No 124
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=34.53 E-value=46 Score=29.01 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=17.1
Q ss_pred cceeeCCCCcC---ceeeccccCCCcccCCC
Q 031166 137 VGSLTCTTCQG---TGIQPRYLDRREFKDDD 164 (164)
Q Consensus 137 ~Gki~C~~C~G---~G~v~~~l~~~~~~~~~ 164 (164)
.|.+.|..|+= ...+-.=-+||.|-+||
T Consensus 28 ~Ge~vC~~CG~Vl~e~~iD~g~EWR~f~~~~ 58 (310)
T PRK00423 28 RGEIVCADCGLVIEENIIDQGPEWRAFDPEQ 58 (310)
T ss_pred CCeEeecccCCcccccccccCCCccCCCccc
Confidence 57777888853 33444445677776653
No 125
>PRK00420 hypothetical protein; Validated
Probab=30.99 E-value=32 Score=26.64 Aligned_cols=6 Identities=33% Similarity=1.027 Sum_probs=3.5
Q ss_pred ccCCCC
Q 031166 107 SCRFCM 112 (164)
Q Consensus 107 tC~~C~ 112 (164)
.||.|+
T Consensus 25 ~CP~Cg 30 (112)
T PRK00420 25 HCPVCG 30 (112)
T ss_pred CCCCCC
Confidence 566664
No 126
>PRK06921 hypothetical protein; Provisional
Probab=30.65 E-value=42 Score=28.58 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=11.9
Q ss_pred ccCCCCcccEEEEE
Q 031166 107 SCRFCMGTGSVTVE 120 (164)
Q Consensus 107 tC~~C~GtG~V~~~ 120 (164)
.|+.|+++|++...
T Consensus 34 ~Cp~C~dtG~i~~~ 47 (266)
T PRK06921 34 DCPKCKDRGIIIYR 47 (266)
T ss_pred CCCCCCCCEEEEee
Confidence 69999999998644
No 127
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=30.51 E-value=35 Score=30.96 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=27.9
Q ss_pred ceeeeeecceEEE------------EEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe
Q 031166 61 LVSVAVGIGIPIF------------YETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL 121 (164)
Q Consensus 61 f~eaa~G~~~~i~------------~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~ 121 (164)
|...++|..+++. +|..+.| ..|.|. -|+.|+|+|++.+-.
T Consensus 232 fl~~~fg~~~~~R~rpsyFPFTePS~Evdv~~---~~~~g~-----------------gc~~ck~~~WiEilG 284 (339)
T PRK00488 232 FLKAFFGEDVKIRFRPSYFPFTEPSAEVDVSC---FKCGGK-----------------GCRVCKGTGWLEILG 284 (339)
T ss_pred HHHHHcCCCCeEEecCCCCCCCCCceEEEEEE---eccCCC-----------------cccccCCCCceEEec
Confidence 4445677656654 4556667 677754 388999999988754
No 128
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.49 E-value=50 Score=20.74 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=13.8
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCc
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDG 136 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G 136 (164)
.|..|+..=.+.... .. .....||.|++
T Consensus 7 ~C~~Cg~~fe~~~~~-~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSI-SE-DDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEc-CC-CCCCcCCCCCC
Confidence 577776554444321 22 33455555555
No 129
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=28.81 E-value=78 Score=26.39 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=20.6
Q ss_pred ccCCCCcccEEEEEe------CCc-eeeeeeCCCCCcc
Q 031166 107 SCRFCMGTGSVTVEL------GGD-EREFSKCINCDGV 137 (164)
Q Consensus 107 tC~~C~GtG~V~~~~------~G~-~~~~~~C~~C~G~ 137 (164)
.|+.|++.|...... |+. +-+.-.|+.|+=+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 39 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYR 39 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCc
Confidence 599999998865432 333 3356678888754
No 130
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.21 E-value=46 Score=32.54 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=52.3
Q ss_pred CCCCCcchhc-cCCc-ce----EE---EEEEeceeeee-----ecceEEEEEe-----eeCCCCCCCeeeeccCCCccCc
Q 031166 38 SSAPYPCIRA-ELDQ-NT----VV---AISVGLVSVAV-----GIGIPIFYET-----QIDNAYDFPIFGAGQARKYSAM 98 (164)
Q Consensus 38 ~~~~~~~~~~-dl~~-~T----~v---~i~i~f~eaa~-----G~~~~i~~e~-----~~~Ca~~~~C~GsGa~~gs~~~ 98 (164)
.....|.++. |+.+ +. .. .|+-.+.+++. | ..=|++.+ .+.| ..|.
T Consensus 326 ~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C---~~Cg----------- 390 (665)
T PRK14873 326 VRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLAC---ARCR----------- 390 (665)
T ss_pred ccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEh---hhCc-----------
Confidence 3556888888 7643 11 11 14444544443 7 66666654 4566 6775
Q ss_pred ccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee--eCCCCcCce
Q 031166 99 LPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTTCQGTG 149 (164)
Q Consensus 99 ~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki--~C~~C~G~G 149 (164)
....|+.|++.=..... ...-.|..|+-.- . .|+.|++.-
T Consensus 391 -----~~~~C~~C~~~L~~h~~-----~~~l~Ch~CG~~~-~p~~Cp~Cgs~~ 432 (665)
T PRK14873 391 -----TPARCRHCTGPLGLPSA-----GGTPRCRWCGRAA-PDWRCPRCGSDR 432 (665)
T ss_pred -----CeeECCCCCCceeEecC-----CCeeECCCCcCCC-cCccCCCCcCCc
Confidence 23489999985443321 2357799998753 4 699998763
No 131
>PF14369 zf-RING_3: zinc-finger
Probab=28.16 E-value=56 Score=20.14 Aligned_cols=11 Identities=45% Similarity=0.981 Sum_probs=7.6
Q ss_pred ccCCCCcccEEE
Q 031166 107 SCRFCMGTGSVT 118 (164)
Q Consensus 107 tC~~C~GtG~V~ 118 (164)
.|+.|+| |.|.
T Consensus 23 ~CP~C~~-gFvE 33 (35)
T PF14369_consen 23 ACPRCHG-GFVE 33 (35)
T ss_pred CCcCCCC-cEeE
Confidence 5888886 6654
No 132
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=27.94 E-value=43 Score=25.32 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=3.6
Q ss_pred ccCCCC
Q 031166 107 SCRFCM 112 (164)
Q Consensus 107 tC~~C~ 112 (164)
.|..|+
T Consensus 72 ~C~~Cg 77 (113)
T PRK12380 72 WCWDCS 77 (113)
T ss_pred EcccCC
Confidence 566665
No 133
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=27.48 E-value=50 Score=23.87 Aligned_cols=33 Identities=33% Similarity=0.752 Sum_probs=17.5
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeCCCCcC
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQG 147 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C~~C~G 147 (164)
.-.|+.|+-...|.+.. ..-.|.|.+.|..|+-
T Consensus 22 ~F~CPfC~~~~sV~v~i----------dkk~~~~~~~C~~Cg~ 54 (81)
T PF05129_consen 22 VFDCPFCNHEKSVSVKI----------DKKEGIGILSCRVCGE 54 (81)
T ss_dssp ----TTT--SS-EEEEE----------ETTTTEEEEEESSS--
T ss_pred eEcCCcCCCCCeEEEEE----------EccCCEEEEEecCCCC
Confidence 34799999888887653 1117888888888853
No 134
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=25.96 E-value=41 Score=25.27 Aligned_cols=23 Identities=17% Similarity=0.535 Sum_probs=12.9
Q ss_pred eeeeCCCCCcccee-----eCCCCcCce
Q 031166 127 EFSKCINCDGVGSL-----TCTTCQGTG 149 (164)
Q Consensus 127 ~~~~C~~C~G~Gki-----~C~~C~G~G 149 (164)
-...|..|+-...+ .||.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 69 ARARCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp -EEEETTTS-EEECHHCCHH-SSSSSS-
T ss_pred CcEECCCCCCEEecCCCCCCCcCCcCCC
Confidence 34567777776665 477777765
No 135
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=25.22 E-value=97 Score=25.22 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=19.6
Q ss_pred cCCCCcccEEEEE-e-----CCc-eeeeeeCCCCCcc
Q 031166 108 CRFCMGTGSVTVE-L-----GGD-EREFSKCINCDGV 137 (164)
Q Consensus 108 C~~C~GtG~V~~~-~-----~G~-~~~~~~C~~C~G~ 137 (164)
|+.|++.+..... . |+. +-+.-.|+.|+=+
T Consensus 1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr 37 (163)
T TIGR00340 1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYR 37 (163)
T ss_pred CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCc
Confidence 8999987654431 1 443 4456789999754
No 136
>PF11672 DUF3268: Protein of unknown function (DUF3268); InterPro: IPR021686 This entry is represented by Listeria phage P100, Gp150. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.95 E-value=76 Score=24.20 Aligned_cols=15 Identities=20% Similarity=0.583 Sum_probs=11.6
Q ss_pred ccccCCCCcccEEEE
Q 031166 105 RCSCRFCMGTGSVTV 119 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~ 119 (164)
+..|+.|+|......
T Consensus 2 p~~CpYCg~~~~l~~ 16 (102)
T PF11672_consen 2 PIICPYCGGPAELVD 16 (102)
T ss_pred CcccCCCCCeeEEcc
Confidence 348999999887754
No 137
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.85 E-value=58 Score=26.08 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=6.5
Q ss_pred eCCCCcCceeec
Q 031166 141 TCTTCQGTGIQP 152 (164)
Q Consensus 141 ~C~~C~G~G~v~ 152 (164)
+|+.|+++...+
T Consensus 132 ~Cp~C~~~~F~R 143 (146)
T PF07295_consen 132 PCPKCGHTEFTR 143 (146)
T ss_pred CCCCCCCCeeee
Confidence 466666555443
No 138
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=24.84 E-value=88 Score=23.52 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=16.0
Q ss_pred CccccCCCCcccEEEEEeCCceeeeeeCCCCC
Q 031166 104 LRCSCRFCMGTGSVTVELGGDEREFSKCINCD 135 (164)
Q Consensus 104 ~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~ 135 (164)
...+|++| |...|.+.. .....|..|+
T Consensus 35 a~y~CpfC-gk~~vkR~a----~GIW~C~~C~ 61 (90)
T PRK03976 35 AKHVCPVC-GRPKVKRVG----TGIWECRKCG 61 (90)
T ss_pred cCccCCCC-CCCceEEEE----EEEEEcCCCC
Confidence 34589999 566666543 2345566554
No 139
>PRK11712 ribonuclease G; Provisional
Probab=24.83 E-value=30 Score=32.73 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=11.4
Q ss_pred cccCCCCcccEEEE
Q 031166 106 CSCRFCMGTGSVTV 119 (164)
Q Consensus 106 ~tC~~C~GtG~V~~ 119 (164)
..|+.|+|+|++..
T Consensus 403 ~~Cp~C~G~G~v~s 416 (489)
T PRK11712 403 GECPTCHGRGTVKT 416 (489)
T ss_pred CCCCCCCCCCCcCC
Confidence 47999999998754
No 140
>PRK11712 ribonuclease G; Provisional
Probab=24.26 E-value=31 Score=32.59 Aligned_cols=12 Identities=33% Similarity=1.038 Sum_probs=7.6
Q ss_pred eeCCCCCcccee
Q 031166 129 SKCINCDGVGSL 140 (164)
Q Consensus 129 ~~C~~C~G~Gki 140 (164)
.+||.|+|+|.+
T Consensus 403 ~~Cp~C~G~G~v 414 (489)
T PRK11712 403 GECPTCHGRGTV 414 (489)
T ss_pred CCCCCCCCCCCc
Confidence 456666666665
No 141
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=23.83 E-value=43 Score=27.62 Aligned_cols=31 Identities=23% Similarity=0.632 Sum_probs=21.8
Q ss_pred ccCCCCcccEEEEEe-----CCceeeeeeCCCCCcc
Q 031166 107 SCRFCMGTGSVTVEL-----GGDEREFSKCINCDGV 137 (164)
Q Consensus 107 tC~~C~GtG~V~~~~-----~G~~~~~~~C~~C~G~ 137 (164)
.||+|+-...-.... +..++-...|++|++.
T Consensus 2 ~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~R 37 (156)
T COG1327 2 KCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGER 37 (156)
T ss_pred CCCCCCCCCCeeeecccccccchhhhhhcccccccc
Confidence 699998887755432 3357777788888874
No 142
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=23.56 E-value=93 Score=25.14 Aligned_cols=31 Identities=26% Similarity=0.549 Sum_probs=19.3
Q ss_pred ccCCCCccc-EEEEEe---CC-ceeeeeeCCCCCcc
Q 031166 107 SCRFCMGTG-SVTVEL---GG-DEREFSKCINCDGV 137 (164)
Q Consensus 107 tC~~C~GtG-~V~~~~---~G-~~~~~~~C~~C~G~ 137 (164)
.||.|+..- .+.... -| .++....|++|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 589998766 444332 23 34445788888764
No 143
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=23.22 E-value=56 Score=19.55 Aligned_cols=18 Identities=22% Similarity=0.704 Sum_probs=11.6
Q ss_pred eeCCCCCccceeeCCCCc
Q 031166 129 SKCINCDGVGSLTCTTCQ 146 (164)
Q Consensus 129 ~~C~~C~G~Gki~C~~C~ 146 (164)
..|..|+..++-.|+.|+
T Consensus 3 ~~C~vC~~~~kY~Cp~C~ 20 (30)
T PF04438_consen 3 KLCSVCGNPAKYRCPRCG 20 (30)
T ss_dssp EEETSSSSEESEE-TTT-
T ss_pred CCCccCcCCCEEECCCcC
Confidence 457777777777788775
No 144
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.37 E-value=1.4e+02 Score=24.88 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=9.0
Q ss_pred ccccCCCCcccEEE
Q 031166 105 RCSCRFCMGTGSVT 118 (164)
Q Consensus 105 ~~tC~~C~GtG~V~ 118 (164)
..+||.|+-+=...
T Consensus 5 ~~~CPvC~~~F~~~ 18 (214)
T PF09986_consen 5 KITCPVCGKEFKTK 18 (214)
T ss_pred ceECCCCCCeeeee
Confidence 44799997654443
No 145
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=21.10 E-value=67 Score=24.35 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.6
Q ss_pred ccCCCCcccEEE
Q 031166 107 SCRFCMGTGSVT 118 (164)
Q Consensus 107 tC~~C~GtG~V~ 118 (164)
.|.-|.++|+..
T Consensus 37 aCeiC~~~GY~q 48 (102)
T PF10080_consen 37 ACEICGPKGYYQ 48 (102)
T ss_pred eccccCCCceEE
Confidence 688888888874
No 146
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=20.82 E-value=61 Score=25.92 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=13.8
Q ss_pred eeeeCCCCCc-----cceeeCCCCcC
Q 031166 127 EFSKCINCDG-----VGSLTCTTCQG 147 (164)
Q Consensus 127 ~~~~C~~C~G-----~Gki~C~~C~G 147 (164)
....||.|+- .|.+.||.|.-
T Consensus 27 L~~hCp~Cg~PLF~KdG~v~CPvC~~ 52 (131)
T COG1645 27 LAKHCPKCGTPLFRKDGEVFCPVCGY 52 (131)
T ss_pred HHhhCcccCCcceeeCCeEECCCCCc
Confidence 3445666654 57778888873
No 147
>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A.
Probab=20.08 E-value=82 Score=21.91 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=4.3
Q ss_pred ccCCCCcccEE
Q 031166 107 SCRFCMGTGSV 117 (164)
Q Consensus 107 tC~~C~GtG~V 117 (164)
.|..|+.++.+
T Consensus 32 lCNDC~~~s~v 42 (61)
T PF14599_consen 32 LCNDCNAKSEV 42 (61)
T ss_dssp EESSS--EEEE
T ss_pred ECCCCCCccce
Confidence 35555554443
Done!