Query 031166
Match_columns 164
No_of_seqs 170 out of 820
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:09:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.8 2.5E-22 8.5E-27 146.8 2.2 89 52-152 3-94 (104)
2 1nlt_A Protein YDJ1, mitochond 99.7 2.5E-18 8.4E-23 142.7 7.1 90 51-152 12-109 (248)
3 1exk_A DNAJ protein; extended 99.6 1.2E-16 3.9E-21 110.6 2.8 75 67-153 1-78 (79)
4 3pmq_A Decaheme cytochrome C M 98.2 5.8E-09 2E-13 98.0 -8.9 90 52-149 166-281 (669)
5 1exk_A DNAJ protein; extended 98.2 2.8E-07 9.6E-12 63.1 1.6 42 105-152 11-63 (79)
6 3lcz_A YCZA, inhibitor of trap 97.8 1.4E-05 4.7E-10 53.1 2.9 26 127-152 8-36 (53)
7 2ctt_A DNAJ homolog subfamily 97.8 7.2E-06 2.5E-10 59.3 1.5 42 105-152 28-80 (104)
8 2bx9_A Anti-trap, AT, tryptoph 97.5 5.1E-05 1.7E-09 50.3 2.9 23 130-152 11-36 (53)
9 1nlt_A Protein YDJ1, mitochond 97.2 7.5E-05 2.6E-09 61.7 0.7 40 106-152 39-93 (248)
10 2bx9_A Anti-trap, AT, tryptoph 96.7 0.00044 1.5E-08 45.8 1.1 25 107-140 11-35 (53)
11 3lcz_A YCZA, inhibitor of trap 96.5 0.00066 2.3E-08 44.9 1.1 25 107-140 11-35 (53)
12 3agx_A DNAJ homolog subfamily 96.4 0.0013 4.5E-08 51.8 2.4 26 51-76 3-28 (181)
13 2q2g_A HSP40 protein, heat sho 93.7 0.021 7.3E-07 44.7 1.4 30 51-80 4-33 (180)
14 1c3g_A Heat shock protein 40; 89.8 0.12 4.1E-06 40.0 1.7 26 52-77 2-27 (170)
15 1dl6_A Transcription factor II 81.8 1.2 4.1E-05 29.3 3.1 27 137-164 28-58 (58)
16 3lz8_A Putative chaperone DNAJ 78.4 1.1 3.7E-05 38.4 2.5 30 51-80 141-170 (329)
17 3pmq_A Decaheme cytochrome C M 74.8 0.33 1.1E-05 45.8 -1.7 42 105-150 191-257 (669)
18 4bbr_M Transcription initiatio 72.1 2.1 7.1E-05 36.6 2.7 26 137-163 40-69 (345)
19 1pft_A TFIIB, PFTFIIBN; N-term 70.0 3.2 0.00011 25.8 2.6 10 137-146 22-31 (50)
20 2vf7_A UVRA2, excinuclease ABC 60.2 4.8 0.00016 38.6 2.9 31 107-137 640-670 (842)
21 2r6f_A Excinuclease ABC subuni 59.3 5.8 0.0002 39.0 3.3 31 107-137 755-785 (972)
22 2ygr_A Uvrabc system protein A 49.0 11 0.00037 37.1 3.3 31 107-137 773-803 (993)
23 3k7a_M Transcription initiatio 45.6 8.8 0.0003 32.4 1.9 10 137-146 40-49 (345)
24 2fiy_A Protein FDHE homolog; F 43.9 25 0.00087 29.9 4.5 52 103-154 180-237 (309)
25 3i38_A Putative chaperone DNAJ 43.9 6.6 0.00023 28.3 0.7 23 51-73 12-34 (109)
26 1ltl_A DNA replication initiat 42.1 5.6 0.00019 32.7 0.1 56 52-115 111-166 (279)
27 3pih_A Uvrabc system protein A 39.9 22 0.00075 34.4 3.9 29 125-153 246-287 (916)
28 2hf1_A Tetraacyldisaccharide-1 37.2 14 0.00049 25.0 1.6 10 137-146 24-33 (68)
29 2jny_A Uncharacterized BCR; st 36.3 15 0.00051 24.9 1.5 10 137-146 26-35 (67)
30 2jr6_A UPF0434 protein NMA0874 36.3 15 0.00051 24.9 1.5 10 137-146 24-33 (68)
31 1xao_A YDJ1, mitochondrial pro 36.3 12 0.00041 27.2 1.1 23 51-73 7-29 (121)
32 2r6f_A Excinuclease ABC subuni 34.4 19 0.00064 35.4 2.4 23 130-152 755-789 (972)
33 2pk7_A Uncharacterized protein 34.4 17 0.00057 24.7 1.5 10 137-146 24-33 (69)
34 3j20_Y 30S ribosomal protein S 32.8 30 0.001 22.0 2.4 15 105-120 19-33 (50)
35 3k1f_M Transcription initiatio 32.6 16 0.00054 29.9 1.4 10 137-146 40-49 (197)
36 2js4_A UPF0434 protein BB2007; 32.4 19 0.00064 24.5 1.5 10 137-146 24-33 (70)
37 2apo_B Ribosome biogenesis pro 32.1 20 0.00067 24.1 1.6 11 141-151 20-30 (60)
38 2vf7_A UVRA2, excinuclease ABC 31.3 23 0.00078 34.0 2.4 24 130-153 640-675 (842)
39 2ygr_A Uvrabc system protein A 30.9 28 0.00096 34.3 3.0 13 141-153 302-314 (993)
40 2aus_D NOP10, ribosome biogene 30.6 20 0.00068 24.1 1.4 12 141-152 19-30 (60)
41 2kpi_A Uncharacterized protein 29.3 23 0.0008 22.9 1.5 9 138-146 25-35 (56)
42 1d4d_A Flavocytochrome C fumar 26.8 2.1 7.1E-05 38.0 -5.2 65 79-148 15-91 (572)
43 3nyb_B Protein AIR2; polya RNA 26.7 34 0.0012 23.8 2.1 59 76-144 4-64 (83)
44 3agx_A DNAJ homolog subfamily 26.5 22 0.00074 27.4 1.1 22 52-73 94-115 (181)
45 2q2g_A HSP40 protein, heat sho 25.4 23 0.0008 27.2 1.1 22 52-73 94-115 (180)
46 3ukx_C Bimax2 peptide; arm rep 24.5 30 0.001 19.9 1.2 15 150-164 4-18 (28)
47 1wii_A Hypothetical UPF0222 pr 24.4 45 0.0015 23.6 2.4 36 105-150 23-58 (85)
48 2bx2_L Ribonuclease E, RNAse E 23.7 21 0.00072 32.7 0.6 11 130-140 410-420 (517)
49 2bx2_L Ribonuclease E, RNAse E 22.3 21 0.00073 32.6 0.4 12 107-118 410-421 (517)
50 1tfi_A Transcriptional elongat 20.4 1.5E+02 0.005 18.6 4.0 31 105-135 9-44 (50)
51 3pih_A Uvrabc system protein A 20.0 67 0.0023 31.1 3.3 31 107-137 715-745 (916)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-22 Score=146.82 Aligned_cols=89 Identities=22% Similarity=0.402 Sum_probs=80.9
Q ss_pred ceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeC
Q 031166 52 NTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKC 131 (164)
Q Consensus 52 ~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C 131 (164)
+..+.|.|+|+||++|++++|.|++.+.| +.|+|+|+++++ .+.+|+.|+|+|++...+ |.|+.+++|
T Consensus 3 ~~~~~l~vslee~~~G~~~~i~~~~~~~C---~~C~G~G~~~g~--------~~~~C~~C~G~G~~~~~~-G~~~~~~~C 70 (104)
T 2ctt_A 3 SGSSGMELTFNQAAKGVNKEFTVNIMDTC---ERCNGKGNEPGT--------KVQHCHYCGGSGMETINT-GPFVMRSTC 70 (104)
T ss_dssp CCCCCCCCCCSSCCSSSCTTCCSSCCEEC---SSSSSSSSCTTC--------CCEECSSSSSSCEEEEEE-TTEEEEEEC
T ss_pred ceEEEEEEEHHHHcCCCEEEEEeeeeeEC---CCCcCCccCCCC--------CCccCCCCCCCEEEEEEe-CCEEEEEEC
Confidence 34567889999999999999999999999 999999999875 466999999999998776 778899999
Q ss_pred CCCCcccee---eCCCCcCceeec
Q 031166 132 INCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 132 ~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
+.|+|.|++ +|+.|+|.|+++
T Consensus 71 ~~C~G~G~~i~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 71 RRCGGRGSIIISPCVVCRGAGQAK 94 (104)
T ss_dssp SSSSSSSEECSSCCSSSSSCSEEC
T ss_pred CcCCCcceECCCcCCCCCCeeEEE
Confidence 999999999 799999999985
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.74 E-value=2.5e-18 Score=142.73 Aligned_cols=90 Identities=24% Similarity=0.399 Sum_probs=78.9
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEe-CCc--eee
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVEL-GGD--ERE 127 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~-~G~--~~~ 127 (164)
+|..+.|.|+|+||++|.+++|.|.+.+.| +.|+|+|+++++ ..+|+.|+|+|++...+ .|. ++.
T Consensus 12 ~d~~~~l~vslee~~~G~~k~i~~~r~~~C---~~C~G~G~~~g~---------~~~C~~C~G~G~~~~~~~~g~~~~~~ 79 (248)
T 1nlt_A 12 KDIKHEISASLEELYKGRTAKLALNKQILC---KECEGRGGKKGA---------VKKCTSCNGQGIKFVTRQMGPMIQRF 79 (248)
T ss_dssp CCEEEEEEECTTHHHHCEEEEEEEEEEEEC---TTTTTCSBSTTT---------CCCCTTSSSSSCEEEEEESSSEEEEE
T ss_pred CCEEEEEEecHHHhcCCceEEEEeeEEEeC---CCCcCccCCCCC---------CccCCCCCCCcEEEEEEecCceEEEE
Confidence 578899999999999999999999999999 999999999875 36999999999986643 443 357
Q ss_pred eeeCCCCCcccee-----eCCCCcCceeec
Q 031166 128 FSKCINCDGVGSL-----TCTTCQGTGIQP 152 (164)
Q Consensus 128 ~~~C~~C~G~Gki-----~C~~C~G~G~v~ 152 (164)
+++|+.|+|.|++ +|+.|+|.|++.
T Consensus 80 ~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 80 QTECDVCHGTGDIIDPKDRCKSCNGKKVEN 109 (248)
T ss_dssp ECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred EEcCCCCCCcCEEeccCCCCcccCCCceEe
Confidence 7899999999976 699999999975
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.62 E-value=1.2e-16 Score=110.57 Aligned_cols=75 Identities=28% Similarity=0.497 Sum_probs=66.4
Q ss_pred ecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---eCC
Q 031166 67 GIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---TCT 143 (164)
Q Consensus 67 G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---~C~ 143 (164)
|.+++|.|++.+.| +.|+|+|+.++. ...+|+.|+|+|++...+ |.|+...+|+.|+|.|++ +|+
T Consensus 1 G~~~~i~~~~~~~C---~~C~G~G~~~~~--------~~~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~~~~~C~ 68 (79)
T 1exk_A 1 GVTKEIRIPTLEEC---DVCHGSGAKPGT--------QPQTCPTCHGSGQVQMRQ-GFFAVQQTCPHCQGRGTLIKDPCN 68 (79)
T ss_dssp CTTTSCCCCCEEEC---GGGTTTSBCSSS--------CCEECTTTTTSSEEEEEE-TTEEEEEECTTTTTSSEECSSBCG
T ss_pred CcEEEEEcccceEC---CCCcccccCCCc--------cCCCCCCCcCeEEEEEEc-CCCEEeeECcCCCCccEECCCcCC
Confidence 67788999999999 999999998654 345899999999988766 778888999999999999 899
Q ss_pred CCcCceeecc
Q 031166 144 TCQGTGIQPR 153 (164)
Q Consensus 144 ~C~G~G~v~~ 153 (164)
.|+|.|+++.
T Consensus 69 ~C~G~G~~~~ 78 (79)
T 1exk_A 69 KCHGHGRVER 78 (79)
T ss_dssp GGTTSSEEEC
T ss_pred CCCCeEEEee
Confidence 9999999853
No 4
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=98.25 E-value=5.8e-09 Score=98.04 Aligned_cols=90 Identities=10% Similarity=0.040 Sum_probs=66.7
Q ss_pred ceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEE-----------
Q 031166 52 NTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVE----------- 120 (164)
Q Consensus 52 ~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~----------- 120 (164)
...+.++|+|+||++|++++|+|.+.+.| ..|+|+|+++|+.. .++++|+.|||+......
T Consensus 166 ~~~~~l~i~feeA~~G~~k~i~v~~~~~C---~tCHGsGA~~Gt~~-----~~~~tC~tCHGs~~~~~~~~~~~~~iH~i 237 (669)
T 3pmq_A 166 LPITNQHYDWQSSGNMLAYTRNLVSIDTC---NSCHSNLAFHGGRY-----NQVETCVTCHNSKKVSNAADIFPQMIHSK 237 (669)
T ss_dssp CCSCCCEEEEECSSSSCCCCCCCCCSHHH---HHHHSSCCTTTTTS-----CSSSCSTTTSSTTTCCCSSCSHHHHHHHH
T ss_pred cceEEEEEEhHHhhCCCceEEEeccCCcC---CCCCCCCCcCCccC-----cCCccCCCCCCCcccCCccccccceeeee
Confidence 34688999999999999999999999999 99999999987510 146799999999422110
Q ss_pred eCCce-eeeeeCCCCCccce----------e----eCCCCcCce
Q 031166 121 LGGDE-REFSKCINCDGVGS----------L----TCTTCQGTG 149 (164)
Q Consensus 121 ~~G~~-~~~~~C~~C~G~Gk----------i----~C~~C~G~G 149 (164)
..|.| +....|..|+..+. + .|..|+...
T Consensus 238 H~G~fP~~~~~C~~CH~~~~~la~~~~w~~~ps~~aC~sCH~~~ 281 (669)
T 3pmq_A 238 HLTGFPQSISNCQTCHADNPDLADRQNWYRVPTMEACGACHTQI 281 (669)
T ss_dssp TTSSCSSCTTCCTTTSCCCTTCCSCSCTTTCCCHHHHHHHCCSC
T ss_pred eccCCCCccCcchhhcCCccccccccccccCCchhhhhhccCCc
Confidence 11222 34567888888876 1 488888644
No 5
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.24 E-value=2.8e-07 Score=63.13 Aligned_cols=42 Identities=33% Similarity=0.790 Sum_probs=34.7
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
..+|+.|+|+|... .....+|+.|+|.|++ +|+.|+|+|++.
T Consensus 11 ~~~C~~C~G~G~~~------~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 11 LEECDVCHGSGAKP------GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63 (79)
T ss_dssp EEECGGGTTTSBCS------SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred ceECCCCcccccCC------CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence 45899999999743 2235799999999975 799999999985
No 6
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.77 E-value=1.4e-05 Score=53.11 Aligned_cols=26 Identities=35% Similarity=0.825 Sum_probs=22.1
Q ss_pred eeeeCCCCCcccee---eCCCCcCceeec
Q 031166 127 EFSKCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 127 ~~~~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
..++|++|+|+|++ +|+.|+|+|++.
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEE
Confidence 35789999999987 799999999976
No 7
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=7.2e-06 Score=59.29 Aligned_cols=42 Identities=33% Similarity=0.744 Sum_probs=33.8
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee-----------eCCCCcCceeec
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-----------TCTTCQGTGIQP 152 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki-----------~C~~C~G~G~v~ 152 (164)
...|+.|+|+|... | ....+|+.|+|.|.+ +|+.|+|+|++.
T Consensus 28 ~~~C~~C~G~G~~~----g--~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i 80 (104)
T 2ctt_A 28 MDTCERCNGKGNEP----G--TKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII 80 (104)
T ss_dssp CEECSSSSSSSSCT----T--CCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred eeECCCCcCCccCC----C--CCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence 35899999999631 2 234789999999965 699999999975
No 8
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.52 E-value=5.1e-05 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.990 Sum_probs=11.9
Q ss_pred eCCCCCcccee---eCCCCcCceeec
Q 031166 130 KCINCDGVGSL---TCTTCQGTGIQP 152 (164)
Q Consensus 130 ~C~~C~G~Gki---~C~~C~G~G~v~ 152 (164)
+|+.|+|+|++ +|+.|+|+|++.
T Consensus 11 ~C~~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 11 ACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp ECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred cCCCCcceeccCCCCCccCCCCccEE
Confidence 44444444444 566666666554
No 9
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.18 E-value=7.5e-05 Score=61.66 Aligned_cols=40 Identities=38% Similarity=0.847 Sum_probs=33.0
Q ss_pred cccCCCCcccEEEEEeCCceeeeeeCCCCCcccee---------------eCCCCcCceeec
Q 031166 106 CSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---------------TCTTCQGTGIQP 152 (164)
Q Consensus 106 ~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki---------------~C~~C~G~G~v~ 152 (164)
..|+.|+|+|.. .|. ..+|+.|+|+|.+ +|+.|+|+|.+.
T Consensus 39 ~~C~~C~G~G~~----~g~---~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i 93 (248)
T 1nlt_A 39 ILCKECEGRGGK----KGA---VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII 93 (248)
T ss_dssp EECTTTTTCSBS----TTT---CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred EeCCCCcCccCC----CCC---CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe
Confidence 389999999974 243 3899999999963 699999999876
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.69 E-value=0.00044 Score=45.77 Aligned_cols=25 Identities=28% Similarity=0.759 Sum_probs=13.4
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCcccee
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL 140 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki 140 (164)
+|+.|+|+|.+. ..+|++|+|.|++
T Consensus 11 ~C~~C~GsG~~~---------~~~C~~C~G~G~v 35 (53)
T 2bx9_A 11 ACPKCERAGEIE---------GTPCPACSGKGVI 35 (53)
T ss_dssp ECTTTTTSSEET---------TEECTTTTTSSEE
T ss_pred cCCCCcceeccC---------CCCCccCCCCccE
Confidence 555555555542 1455555555554
No 11
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.52 E-value=0.00066 Score=44.89 Aligned_cols=25 Identities=32% Similarity=0.761 Sum_probs=12.9
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCcccee
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL 140 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki 140 (164)
+|+.|+|+|++. ..+|+.|+|.|.+
T Consensus 11 ~C~~C~GsG~~i---------~~~C~~C~G~G~v 35 (53)
T 3lcz_A 11 TCPNCNGSGREE---------PEPCPKCLGKGVI 35 (53)
T ss_dssp ECTTTTTSCEET---------TEECTTTTTSSEE
T ss_pred cCcCCcccccCC---------CCcCCCCCCcEEE
Confidence 455555555542 1445555555554
No 12
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=96.42 E-value=0.0013 Score=51.81 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=21.0
Q ss_pred cceEEEEEEeceeeeeecceEEEEEe
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYET 76 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~ 76 (164)
++..+.+.|+|+||++|++++|.+.+
T Consensus 3 ~d~~~~l~islee~~~G~~k~i~i~~ 28 (181)
T 3agx_A 3 PPVTHDLRVSLEEIYSGCTKKMKISH 28 (181)
T ss_dssp ---CEEEEECHHHHHHCEEEEEEEEE
T ss_pred CCEEEEEEEEHHHhcCCcEEEEEEec
Confidence 46778999999999999999998764
No 13
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=93.66 E-value=0.021 Score=44.70 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=28.1
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCC
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDN 80 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~C 80 (164)
+|..+.+.|+|+||++|.+++|.+.+.+.|
T Consensus 4 ~d~~~~l~islee~~~G~~k~i~~~~~~~c 33 (180)
T 2q2g_A 4 RSHEVPLLVTLEELYLGKRKKIKVTRKRFI 33 (180)
T ss_dssp CEEEEEEEECHHHHHHCEEEEEEEEEEEEE
T ss_pred CCEEEEEEeeHHHhcCCcEEEEEEeEEEec
Confidence 577899999999999999999999999888
No 14
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=89.83 E-value=0.12 Score=40.03 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=23.7
Q ss_pred ceEEEEEEeceeeeeecceEEEEEee
Q 031166 52 NTVVAISVGLVSVAVGIGIPIFYETQ 77 (164)
Q Consensus 52 ~T~v~i~i~f~eaa~G~~~~i~~e~~ 77 (164)
|..+.+.|+|+||++|.+++|.+.+.
T Consensus 2 d~~~~l~islee~~~G~~k~i~~~~~ 27 (170)
T 1c3g_A 2 TVQVNLPVSLEDLFVGKKKSFKIGRK 27 (170)
T ss_dssp EEEEEEEECHHHHHHTCEEEEEEEEE
T ss_pred CEEEEEEeEHHHhhCCcEEEEEEEEe
Confidence 56789999999999999999999875
No 15
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=81.82 E-value=1.2 Score=29.27 Aligned_cols=27 Identities=26% Similarity=0.677 Sum_probs=14.8
Q ss_pred cceeeCCCCcCceeecccc----CCCcccCCC
Q 031166 137 VGSLTCTTCQGTGIQPRYL----DRREFKDDD 164 (164)
Q Consensus 137 ~Gki~C~~C~G~G~v~~~l----~~~~~~~~~ 164 (164)
.|.+.|..|+ .=...+-+ ++|.|-+||
T Consensus 28 ~ge~vC~~CG-lVl~e~~iD~gpEWR~F~~~~ 58 (58)
T 1dl6_A 28 AGDMICPECG-LVVGDRVIDVGSEWRTFSNDK 58 (58)
T ss_dssp SCCEECTTTC-CEECCSCCCCCCSCCCSCCCC
T ss_pred CCeEEeCCCC-CEEeccccccCCcccccCCCC
Confidence 4566788882 22222333 567776664
No 16
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=78.42 E-value=1.1 Score=38.40 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=27.4
Q ss_pred cceEEEEEEeceeeeeecceEEEEEeeeCC
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDN 80 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~~e~~~~C 80 (164)
+|-.+.|.|+|+||+.|.++.|.+++.+.|
T Consensus 141 ~Dl~~~l~vsleea~~G~~k~i~i~~~v~~ 170 (329)
T 3lz8_A 141 HDLEIEVAVFLEETLAEQTRTISYNLPVYN 170 (329)
T ss_dssp CCEEEEECCCTTGGGSCEEEEEEEEEEECC
T ss_pred CCEEEEEecchhhhhhccceEEEEEEEeec
Confidence 578899999999999999999999998865
No 17
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=74.84 E-value=0.33 Score=45.81 Aligned_cols=42 Identities=19% Similarity=0.547 Sum_probs=31.2
Q ss_pred ccccCCCCcccEEEEEeCCc-eeeeeeCCCCCccc-------------------e-----eeCCCCcCcee
Q 031166 105 RCSCRFCMGTGSVTVELGGD-EREFSKCINCDGVG-------------------S-----LTCTTCQGTGI 150 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~-~~~~~~C~~C~G~G-------------------k-----i~C~~C~G~G~ 150 (164)
..+|..|||+|- ..|. .....+|+.|+|.. . ..|..|+..+.
T Consensus 191 ~~~C~tCHGsGA----~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~ 257 (669)
T 3pmq_A 191 IDTCNSCHSNLA----FHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP 257 (669)
T ss_dssp SHHHHHHHSSCC----TTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred CCcCCCCCCCCC----cCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence 458999999996 2232 33568999999992 1 15999999875
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=72.14 E-value=2.1 Score=36.64 Aligned_cols=26 Identities=27% Similarity=0.670 Sum_probs=15.5
Q ss_pred cceeeCCCCcCceeeccccC----CCcccCC
Q 031166 137 VGSLTCTTCQGTGIQPRYLD----RREFKDD 163 (164)
Q Consensus 137 ~Gki~C~~C~G~G~v~~~l~----~~~~~~~ 163 (164)
.|.+.|..|+ .=.-.+.+| ||.|-+|
T Consensus 40 ~G~~vC~~CG-lVl~e~~iD~g~EWR~f~~d 69 (345)
T 4bbr_M 40 EGDVVCALCG-LVLSDKLVDTRSEWRTFSND 69 (345)
T ss_dssp GTEEEETTTC-BEEESCCBCHHHHHTTTSCS
T ss_pred CCcEEeCCCC-CCccCcccccCccccCCCcc
Confidence 5777899992 222234554 6777644
No 19
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=70.00 E-value=3.2 Score=25.80 Aligned_cols=10 Identities=30% Similarity=1.009 Sum_probs=7.2
Q ss_pred cceeeCCCCc
Q 031166 137 VGSLTCTTCQ 146 (164)
Q Consensus 137 ~Gki~C~~C~ 146 (164)
.|.++|+.|+
T Consensus 22 ~gelvC~~CG 31 (50)
T 1pft_A 22 RGEIVCAKCG 31 (50)
T ss_dssp TTEEEESSSC
T ss_pred CCeEECcccC
Confidence 4666888884
No 20
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=60.22 E-value=4.8 Score=38.64 Aligned_cols=31 Identities=35% Similarity=0.649 Sum_probs=20.0
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCcc
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDGV 137 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~ 137 (164)
.|+.|.|.|.+............+|+.|+|.
T Consensus 640 ~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~ 670 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLPSVYAPCPVCHGT 670 (842)
T ss_dssp BCTTTTTCSEEEETTCSSSCEEEECTTTTTC
T ss_pred ccccccCCCccchhhhcCCccceecccccCc
Confidence 5999999999877643223344555555554
No 21
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=59.25 E-value=5.8 Score=38.95 Aligned_cols=31 Identities=26% Similarity=0.616 Sum_probs=21.4
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCcc
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDGV 137 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~ 137 (164)
.|+.|.|.|.+............+|+.|.|.
T Consensus 755 rC~~C~g~G~i~~em~fl~~v~~~ce~c~G~ 785 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHFLPDVYVPCEVCHGK 785 (972)
T ss_dssp BCTTTTTCSEEEECCSSSCCEEEECTTTTTC
T ss_pred cccccccccceeeehhccccccccccccccc
Confidence 5999999999987754333345566666664
No 22
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=48.96 E-value=11 Score=37.10 Aligned_cols=31 Identities=26% Similarity=0.703 Sum_probs=21.7
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCcc
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDGV 137 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~ 137 (164)
.|+.|.|.|.+............+|..|.|.
T Consensus 773 rC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~ 803 (993)
T 2ygr_A 773 RCEACTGDGTIKIEMNFLPDVYVPCEVCQGA 803 (993)
T ss_dssp BCTTTTSSSEEEECCTTSCCEEEECTTTTTC
T ss_pred cccccccccceeehhhccccceeeehhcccc
Confidence 5999999999987754333355666666664
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=45.56 E-value=8.8 Score=32.44 Aligned_cols=10 Identities=30% Similarity=0.943 Sum_probs=7.0
Q ss_pred cceeeCCCCc
Q 031166 137 VGSLTCTTCQ 146 (164)
Q Consensus 137 ~Gki~C~~C~ 146 (164)
.|.+.|..|+
T Consensus 40 ~G~~vC~~CG 49 (345)
T 3k7a_M 40 EGDVVCALCG 49 (345)
T ss_dssp SCSCCCSSSC
T ss_pred CCCEecCCCC
Confidence 4566788885
No 24
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=43.92 E-value=25 Score=29.87 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=33.6
Q ss_pred cCccccCCCCcccEEEEEeC-C--ceeeeeeCCCCCcccee---eCCCCcCceeeccc
Q 031166 103 WLRCSCRFCMGTGSVTVELG-G--DEREFSKCINCDGVGSL---TCTTCQGTGIQPRY 154 (164)
Q Consensus 103 ~~~~tC~~C~GtG~V~~~~~-G--~~~~~~~C~~C~G~Gki---~C~~C~G~G~v~~~ 154 (164)
|....||.|++.=...+... | .-..+-.|+-|+-.=.. .|+.|.-++.+..|
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~ 237 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYL 237 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEE
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEE
Confidence 34558999999866554331 1 12236778888876655 68888877655444
No 25
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=43.88 E-value=6.6 Score=28.25 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=19.5
Q ss_pred cceEEEEEEeceeeeeecceEEE
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIF 73 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~ 73 (164)
.|=.+.+.|+|.||+.|.+++|.
T Consensus 12 ~DL~~~~~Isl~eAl~G~~i~v~ 34 (109)
T 3i38_A 12 HNLEIVLPLAPWEAALGAKVTVP 34 (109)
T ss_dssp TEEEEEEEECHHHHHHCEEEEEC
T ss_pred CEEEEEEEcCHHHHhCCCEEEEE
Confidence 36678999999999999987765
No 26
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=42.14 E-value=5.6 Score=32.68 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=27.8
Q ss_pred ceEEEEEEeceeeeeecceEEEEEeeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCccc
Q 031166 52 NTVVAISVGLVSVAVGIGIPIFYETQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTG 115 (164)
Q Consensus 52 ~T~v~i~i~f~eaa~G~~~~i~~e~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG 115 (164)
+.+|.|+=.+.- .+.-++........| ..|.-.....-.. ..-+.+..|+.|++.|
T Consensus 111 gkLV~v~GiV~r--~S~V~p~~~~~~f~C---~~C~~~~~v~~~~---~~~~~P~~Cp~C~~~~ 166 (279)
T 1ltl_A 111 GKFVAVDGIVRK--TDEIRPRIVKAVFEC---RGCMRHHAVTQST---NMITEPSLCSECGGRS 166 (279)
T ss_dssp TSEEEEEEEEEE--ECCCEEEEEEEEEEE---TTTCCEEEEECSS---SSCCCCSCCTTTCCCC
T ss_pred CCEEEEEEEEEE--ecceEEEEEEEEEEc---CCCCCEEEEEecC---CcccCCCcCCCCCCCC
Confidence 455555433321 233355666666678 6776443321000 0001345788888887
No 27
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=39.86 E-value=22 Score=34.44 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=18.9
Q ss_pred eeeeeeCCCCCcccee-------------eCCCCcCceeecc
Q 031166 125 EREFSKCINCDGVGSL-------------TCTTCQGTGIQPR 153 (164)
Q Consensus 125 ~~~~~~C~~C~G~Gki-------------~C~~C~G~G~v~~ 153 (164)
|+....||.|+-.=.. .|++|+|.|++..
T Consensus 246 ~s~~~~c~~~~~~~~~~~~~~fsfn~p~g~C~~C~G~G~~~~ 287 (916)
T 3pih_A 246 FSENLMCPVCGIGFPEITPKLFSFNSPYGACPNCHGLGFTFE 287 (916)
T ss_dssp EESSCBCTTTCCCCCCCSGGGGCTTSTTTBCTTTTTSSEEEE
T ss_pred ecccccCcccCCccCCCCHhhcCCCCCCCcCCeeecccceEe
Confidence 5555678887533111 4889998888754
No 28
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=37.19 E-value=14 Score=24.97 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=7.1
Q ss_pred cceeeCCCCc
Q 031166 137 VGSLTCTTCQ 146 (164)
Q Consensus 137 ~Gki~C~~C~ 146 (164)
.|.+.|+.|+
T Consensus 24 ~~~LiC~~cg 33 (68)
T 2hf1_A 24 KDELICKGDR 33 (68)
T ss_dssp TTEEEETTTT
T ss_pred CCEEEcCCCC
Confidence 4667888874
No 29
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=36.34 E-value=15 Score=24.92 Aligned_cols=10 Identities=10% Similarity=-0.127 Sum_probs=7.2
Q ss_pred cceeeCCCCc
Q 031166 137 VGSLTCTTCQ 146 (164)
Q Consensus 137 ~Gki~C~~C~ 146 (164)
.|.+.|+.|+
T Consensus 26 ~g~LvC~~c~ 35 (67)
T 2jny_A 26 EQLLVNERLN 35 (67)
T ss_dssp TTEEEETTTT
T ss_pred CCEEEcCCCC
Confidence 4677888874
No 30
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=36.34 E-value=15 Score=24.89 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=7.0
Q ss_pred cceeeCCCCc
Q 031166 137 VGSLTCTTCQ 146 (164)
Q Consensus 137 ~Gki~C~~C~ 146 (164)
.|.+.|+.|+
T Consensus 24 ~~~LiC~~cg 33 (68)
T 2jr6_A 24 KQELWSRQAK 33 (68)
T ss_dssp TTEEEETTTT
T ss_pred CCEEEcCCCC
Confidence 3667788874
No 31
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=36.32 E-value=12 Score=27.19 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=19.3
Q ss_pred cceEEEEEEeceeeeeecceEEE
Q 031166 51 QNTVVAISVGLVSVAVGIGIPIF 73 (164)
Q Consensus 51 ~~T~v~i~i~f~eaa~G~~~~i~ 73 (164)
.|=.+.+.|+|.||+.|.+++|.
T Consensus 7 ~DL~~~~~Isl~eAllG~~i~v~ 29 (121)
T 1xao_A 7 DDLVYEAEIDLLTAIAGGEFALE 29 (121)
T ss_dssp TEEEEEEEEEHHHHHHCEEEEEE
T ss_pred CeEEEEEEcCHHHHhCCCEEEEe
Confidence 35678999999999999987774
No 32
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=34.45 E-value=19 Score=35.44 Aligned_cols=23 Identities=30% Similarity=0.918 Sum_probs=19.6
Q ss_pred eCCCCCcccee------------eCCCCcCceeec
Q 031166 130 KCINCDGVGSL------------TCTTCQGTGIQP 152 (164)
Q Consensus 130 ~C~~C~G~Gki------------~C~~C~G~G~v~ 152 (164)
+|+.|.|.|.+ +|..|+|..+.+
T Consensus 755 rC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~ 789 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNR 789 (972)
T ss_dssp BCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCT
T ss_pred cccccccccceeeehhccccccccccccccccccc
Confidence 59999999997 699999986644
No 33
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=34.40 E-value=17 Score=24.71 Aligned_cols=10 Identities=10% Similarity=-0.017 Sum_probs=6.9
Q ss_pred cceeeCCCCc
Q 031166 137 VGSLTCTTCQ 146 (164)
Q Consensus 137 ~Gki~C~~C~ 146 (164)
.|.+.|+.|+
T Consensus 24 ~~~LiC~~cg 33 (69)
T 2pk7_A 24 KTELISKGAG 33 (69)
T ss_dssp SSEEEETTTT
T ss_pred CCEEEcCCCC
Confidence 4666788774
No 34
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.81 E-value=30 Score=21.99 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=7.9
Q ss_pred ccccCCCCcccEEEEE
Q 031166 105 RCSCRFCMGTGSVTVE 120 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~ 120 (164)
.+.||.|+ +|.+...
T Consensus 19 ~k~CP~CG-~~~fm~~ 33 (50)
T 3j20_Y 19 NKFCPRCG-PGVFMAD 33 (50)
T ss_dssp SEECSSSC-SSCEEEE
T ss_pred cccCCCCC-CceEEec
Confidence 34677773 3555443
No 35
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=32.59 E-value=16 Score=29.92 Aligned_cols=10 Identities=30% Similarity=0.943 Sum_probs=7.0
Q ss_pred cceeeCCCCc
Q 031166 137 VGSLTCTTCQ 146 (164)
Q Consensus 137 ~Gki~C~~C~ 146 (164)
.|.+.|..|.
T Consensus 40 rGE~VCsdCG 49 (197)
T 3k1f_M 40 EGDVVCALCG 49 (197)
T ss_dssp GTEEEETTTC
T ss_pred CCEEEEcCCC
Confidence 5666788885
No 36
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=32.43 E-value=19 Score=24.53 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=7.1
Q ss_pred cceeeCCCCc
Q 031166 137 VGSLTCTTCQ 146 (164)
Q Consensus 137 ~Gki~C~~C~ 146 (164)
.|.+.|+.|+
T Consensus 24 ~~~LiC~~cg 33 (70)
T 2js4_A 24 QAELVCNADR 33 (70)
T ss_dssp TTEEEETTTT
T ss_pred CCEEEcCCCC
Confidence 4667888874
No 37
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=32.11 E-value=20 Score=24.08 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=5.7
Q ss_pred eCCCCcCceee
Q 031166 141 TCTTCQGTGIQ 151 (164)
Q Consensus 141 ~C~~C~G~G~v 151 (164)
.|+.|++.-..
T Consensus 20 ~CP~CG~~T~~ 30 (60)
T 2apo_B 20 ICPKCGEKTVI 30 (60)
T ss_dssp BCSSSCSBCBC
T ss_pred cCcCCCCcCCC
Confidence 45555554443
No 38
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=31.33 E-value=23 Score=34.00 Aligned_cols=24 Identities=33% Similarity=0.945 Sum_probs=20.5
Q ss_pred eCCCCCcccee------------eCCCCcCceeecc
Q 031166 130 KCINCDGVGSL------------TCTTCQGTGIQPR 153 (164)
Q Consensus 130 ~C~~C~G~Gki------------~C~~C~G~G~v~~ 153 (164)
.|+.|.|.|.+ .|+.|+|..+.+.
T Consensus 640 ~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e 675 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAE 675 (842)
T ss_dssp BCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTT
T ss_pred ccccccCCCccchhhhcCCccceecccccCcccchh
Confidence 49999999977 5999999987654
No 39
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=30.91 E-value=28 Score=34.26 Aligned_cols=13 Identities=38% Similarity=1.053 Sum_probs=9.3
Q ss_pred eCCCCcCceeecc
Q 031166 141 TCTTCQGTGIQPR 153 (164)
Q Consensus 141 ~C~~C~G~G~v~~ 153 (164)
.|++|+|.|.+..
T Consensus 302 aCp~C~G~G~~~~ 314 (993)
T 2ygr_A 302 ACPDCSGLGIRKE 314 (993)
T ss_dssp BCTTTTTSCEEEE
T ss_pred CCCCCcCccceee
Confidence 4888888887653
No 40
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=30.64 E-value=20 Score=24.10 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=6.3
Q ss_pred eCCCCcCceeec
Q 031166 141 TCTTCQGTGIQP 152 (164)
Q Consensus 141 ~C~~C~G~G~v~ 152 (164)
.|+.|++.-...
T Consensus 19 ~CP~CG~~t~~a 30 (60)
T 2aus_D 19 TCPVCGEKTKVA 30 (60)
T ss_dssp BCTTTCSBCEES
T ss_pred cCcCCCCccCCC
Confidence 466665554443
No 41
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.32 E-value=23 Score=22.94 Aligned_cols=9 Identities=44% Similarity=1.058 Sum_probs=6.3
Q ss_pred ceeeCC--CCc
Q 031166 138 GSLTCT--TCQ 146 (164)
Q Consensus 138 Gki~C~--~C~ 146 (164)
|.+.|+ .|+
T Consensus 25 ~~L~C~~~~c~ 35 (56)
T 2kpi_A 25 AELICTGQDCG 35 (56)
T ss_dssp TEEEECSSSCC
T ss_pred CEEEcCCcCCC
Confidence 666787 774
No 42
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=26.82 E-value=2.1 Score=38.03 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=33.8
Q ss_pred CCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccE-------EEEEe-CCce-eeeeeCCCCCcccee---eCCCCc
Q 031166 79 DNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGS-------VTVEL-GGDE-REFSKCINCDGVGSL---TCTTCQ 146 (164)
Q Consensus 79 ~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~-------V~~~~-~G~~-~~~~~C~~C~G~Gki---~C~~C~ 146 (164)
.| ..||+........ .........|..|||.-. +...+ +..+ ....+|..|+-.-.. .|..|+
T Consensus 15 ~C---~~CH~~~~~~~~~--~~~~~~~~~C~~CH~~~~~~~~~~~~~~~np~~~~~~g~v~C~~Ch~~~~~~~~~c~~ch 89 (572)
T 1d4d_A 15 GC---DSCHVSDKGGVTN--DNLTHENGQCVSCHGDLKELAAAAPKDKVSPHKSHLIGEIACTSCHKGHEKSVAYCDACH 89 (572)
T ss_dssp CS---TTTSSSSSCCCSS--TTCHHHHHHHHHHHCCHHHHHHHCC---CBTTBSSCCSCCCGGGTSCSSSCCCCGGGGTC
T ss_pred Ch---hhhCCCCcCCCcc--cccccccchhhhhCCCHHHhhhhccccccCCchhhcCCCCCcccccccccCCCCcccccc
Confidence 67 9999886321110 000112457999998621 11111 1111 122389999865322 699998
Q ss_pred Cc
Q 031166 147 GT 148 (164)
Q Consensus 147 G~ 148 (164)
-.
T Consensus 90 ~~ 91 (572)
T 1d4d_A 90 SF 91 (572)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 43
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=26.67 E-value=34 Score=23.78 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=28.2
Q ss_pred eeeCCCCCCCeeeeccCCCccCcccCCcCccccCCCCcccEEEEEeCCceeeeeeCCCCCcccee--eCCC
Q 031166 76 TQIDNAYDFPIFGAGQARKYSAMLPLQWLRCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTT 144 (164)
Q Consensus 76 ~~~~Ca~~~~C~GsGa~~gs~~~~~~~~~~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki--~C~~ 144 (164)
+.+.| ..|...|-....= | .+..|-.|...|.+...... ......|-+|+..|-+ -|+.
T Consensus 4 k~~~C---~~Cg~~GH~~~~C---p---~~~rcY~c~~~gh~~~~c~~-p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 4 KKVQC---TLCKSKKHSKERC---P---SIWRAYILVDDNEKAKPKVL-PFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp ---CC---SSSCCSSSCGGGC---G---GGTCCCCBC--------------CCCBCSSSSCBSSCGGGCSS
T ss_pred ccCCC---CCCCCCCCccccC---C---CcccccccccCCcccccccC-CCCCCeecccCCCCcCcccCCc
Confidence 35667 8888888764321 0 23367788888876543211 1123568888888877 4765
No 44
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=26.47 E-value=22 Score=27.45 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=19.0
Q ss_pred ceEEEEEEeceeeeeecceEEE
Q 031166 52 NTVVAISVGLVSVAVGIGIPIF 73 (164)
Q Consensus 52 ~T~v~i~i~f~eaa~G~~~~i~ 73 (164)
|=.+++.|+|.||+.|.+++|.
T Consensus 94 DL~~~~~Isl~eAllG~~i~v~ 115 (181)
T 3agx_A 94 DVIYPARISLREALCGCTVNVP 115 (181)
T ss_dssp EEEEEEEEEHHHHHHCEEEEEE
T ss_pred cEEEEEEcCHHHHhCCCEEEeE
Confidence 5688999999999999887764
No 45
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=25.39 E-value=23 Score=27.18 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=18.6
Q ss_pred ceEEEEEEeceeeeeecceEEE
Q 031166 52 NTVVAISVGLVSVAVGIGIPIF 73 (164)
Q Consensus 52 ~T~v~i~i~f~eaa~G~~~~i~ 73 (164)
|=.+++.|+|.||+.|.+++|.
T Consensus 94 DL~~~~~Isl~eAllG~~i~v~ 115 (180)
T 2q2g_A 94 HLIMKVTIPLVRALTGFTCPVT 115 (180)
T ss_dssp EEEEEEEEEHHHHHHCEEEEEE
T ss_pred EEEEEEEcCHHHHhCCCEEEee
Confidence 6678999999999999877664
No 46
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=24.49 E-value=30 Score=19.93 Aligned_cols=15 Identities=40% Similarity=0.621 Sum_probs=9.0
Q ss_pred eeccccCCCcccCCC
Q 031166 150 IQPRYLDRREFKDDD 164 (164)
Q Consensus 150 ~v~~~l~~~~~~~~~ 164 (164)
+.++--+.|||.|||
T Consensus 4 rrrrrkrkrewdddd 18 (28)
T 3ukx_C 4 RRRRRKRKREWDDDD 18 (28)
T ss_dssp --CCCCCCCCCCCSS
T ss_pred hHHHHHhhcccccCC
Confidence 344455678888876
No 47
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=24.37 E-value=45 Score=23.57 Aligned_cols=36 Identities=25% Similarity=0.583 Sum_probs=25.2
Q ss_pred ccccCCCCcccEEEEEeCCceeeeeeCCCCCccceeeCCCCcCcee
Q 031166 105 RCSCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQGTGI 150 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~Gki~C~~C~G~G~ 150 (164)
.-.|++|+-...|.+... .-.|.|.+.|..|+-.=.
T Consensus 23 ~F~CPfCnh~~sV~vkid----------k~~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMD----------RARNTGVISCTVCLEEFQ 58 (85)
T ss_dssp CCCCTTTCCSSCEEEEEE----------TTTTEEEEEESSSCCEEE
T ss_pred eEcCCCCCCCCeEEEEEE----------ccCCEEEEEcccCCCeEE
Confidence 347999999888776530 125678888888875433
No 48
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=23.67 E-value=21 Score=32.66 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=6.4
Q ss_pred eCCCCCcccee
Q 031166 130 KCINCDGVGSL 140 (164)
Q Consensus 130 ~C~~C~G~Gki 140 (164)
+||.|+|+|.+
T Consensus 410 ~Cp~C~G~G~v 420 (517)
T 2bx2_L 410 VCPRCSGTGTV 420 (517)
T ss_dssp CCSSSSSSSCC
T ss_pred cCCCcCCceeE
Confidence 46666666654
No 49
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=22.33 E-value=21 Score=32.61 Aligned_cols=12 Identities=50% Similarity=1.024 Sum_probs=9.8
Q ss_pred ccCCCCcccEEE
Q 031166 107 SCRFCMGTGSVT 118 (164)
Q Consensus 107 tC~~C~GtG~V~ 118 (164)
.|+.|+|+|.+.
T Consensus 410 ~Cp~C~G~G~v~ 421 (517)
T 2bx2_L 410 VCPRCSGTGTVR 421 (517)
T ss_dssp CCSSSSSSSCCC
T ss_pred cCCCcCCceeEC
Confidence 688899988874
No 50
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.43 E-value=1.5e+02 Score=18.60 Aligned_cols=31 Identities=16% Similarity=0.405 Sum_probs=20.5
Q ss_pred ccccCCCCcccEEEEEeC-----CceeeeeeCCCCC
Q 031166 105 RCSCRFCMGTGSVTVELG-----GDEREFSKCINCD 135 (164)
Q Consensus 105 ~~tC~~C~GtG~V~~~~~-----G~~~~~~~C~~C~ 135 (164)
...|+.|+...-+-.+.. -.+...-.|.+|+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg 44 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECG 44 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSC
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCC
Confidence 348999998777654321 1366677788875
No 51
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=20.04 E-value=67 Score=31.10 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=21.3
Q ss_pred ccCCCCcccEEEEEeCCceeeeeeCCCCCcc
Q 031166 107 SCRFCMGTGSVTVELGGDEREFSKCINCDGV 137 (164)
Q Consensus 107 tC~~C~GtG~V~~~~~G~~~~~~~C~~C~G~ 137 (164)
.|..|.|.|.+.............|+.|.|.
T Consensus 715 rc~~c~g~G~i~~e~~flp~~~v~c~~c~g~ 745 (916)
T 3pih_A 715 RCEACQGQGYVKIEMLFLPDVYVECDVCKGK 745 (916)
T ss_dssp BCTTTTTSSEEEECCTTSCCEEEECTTTTTS
T ss_pred ccccccCcceEEEeeeccCcceeeccccccc
Confidence 6999999999987653333445566666653
Done!