BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031168
         (164 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
 pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
           Protein From Arabidopsis Thaliana At3g01520 With Amp
           Bound
          Length = 175

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 22/159 (13%)

Query: 14  SACSKKALQWAADNVVRNGDH-----LILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFS 68
           S   K+A +W  + +VR+        L+ V VV E G +  +              + ++
Sbjct: 24  SISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVD--------------SIYA 69

Query: 69  EPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFW---GDPREKICEAIDKIPLSCLV 125
            P   +        + L ++     +   + V    W   GDP++ IC+ + ++    LV
Sbjct: 70  SPEDFRDXRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLV 129

Query: 126 IGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGIHET 164
           +G+RGLG+ ++  +G+VS + V +  CPV  +K+   ET
Sbjct: 130 VGSRGLGRFQKVFVGTVSAFCVKHAECPVXTIKRNADET 168


>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
           Thermus Themophilus Hb8
 pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
 pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
 pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
           From Thermus Thermophilus Hb8
          Length = 137

 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 103 IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158
           +  G P E I +A        +V+G RGLG L    +GS S  VV    CPV +V+
Sbjct: 82  LLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137


>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
           Archaeoglobus Fulgidus Dsm 4304
 pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
           Archaeoglobus Fulgidus Dsm 4304
          Length = 294

 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 59/155 (38%), Gaps = 35/155 (22%)

Query: 6   RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLA 65
           RV VA DFS  + +AL++A   V + G  L ++ V  +G                     
Sbjct: 172 RVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDG--------------------- 210

Query: 66  EFSEPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLV 125
                              L +   V   + I V + I  G P + I    ++I  + + 
Sbjct: 211 --------------DKTADLRVXEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIF 256

Query: 126 IGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160
            G+RG G +   I+GS S  V+     PV V K+G
Sbjct: 257 XGSRGAGSVXTXILGSTSESVIRRSPVPVFVCKRG 291



 Score = 37.0 bits (84), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 106 GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159
           GDP  +I +A +    S +  G+RG  K K+ ++GSVS  V+++   PV + K 
Sbjct: 111 GDPVVEIIKASEN--YSFIAXGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKH 162


>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
          Length = 170

 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 79/159 (49%), Gaps = 12/159 (7%)

Query: 5   RRVGVAVDFSACSKKALQ-WAADNVVRNGDHLILVTVVPEGGLEK---GEQQLWEDSGSP 60
           R+V    DFS  + +A++ +   N +  G+ +IL+ V+ EG LE+   G    ++++   
Sbjct: 6   RKVLFPTDFSEGAYRAVEVFEKRNKMEVGE-VILLHVIDEGTLEELMDGYSFFYDNAE-- 62

Query: 61  LIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIP 120
            I L +  E   +K+  ++   E  + V    R K +  +++  +G P ++I +  ++  
Sbjct: 63  -IELKDIKEK--LKEEASRKLQEKAEEVKRAFRAKNVRTIIR--FGIPWDEIVKVAEEEN 117

Query: 121 LSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159
           +S +++ +RG   L    +GS    V+     PV ++K+
Sbjct: 118 VSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKE 156


>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
           Nitrosomonas Europaea With Amp Bound
          Length = 150

 Score = 37.0 bits (84), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 103 IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158
           + WG+PRE+I    ++  +  +V+G+ G   L   ++GS +N V++   C V  V+
Sbjct: 92  LVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146


>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
           Nitrosomonas Europaea
          Length = 150

 Score = 37.0 bits (84), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 103 IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158
           + WG+PRE+I    ++  +  +V+G+ G   L   ++GS +N V++   C V  V+
Sbjct: 92  LVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146


>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
 pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
          Length = 146

 Score = 35.8 bits (81), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 9/75 (12%)

Query: 93  RQKQIVVVM--------KIFWGDPREKICEAIDKIP-LSCLVIGNRGLGKLKRAIMGSVS 143
           RQ+Q  V          +I +G P+  I +   + P +  +V+G  G     R  +GS +
Sbjct: 72  RQRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTT 131

Query: 144 NYVVNNGSCPVTVVK 158
           +YVV++  C V V++
Sbjct: 132 SYVVDHAPCNVIVIR 146


>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
           Hypothetical Protein Mj0577: A Test Case Of Structural
           Genomics
 pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
           Hypothetical Protein Mj0577: A Test Case Of Structural
           Genomics
          Length = 162

 Score = 35.0 bits (79), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 31/170 (18%)

Query: 5   RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE---------------GGLEKG 49
           +++    DFS  ++ AL+          + +IL+ V+ E                GL K 
Sbjct: 6   KKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS 65

Query: 50  EQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPR 109
            ++   +  + L   A+     I K           ++ +   + K I+VV     G P 
Sbjct: 66  VEEFENELKNKLTEEAKNKMENIKK-----------ELEDVGFKVKDIIVV-----GIPH 109

Query: 110 EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159
           E+I +  +   +  +++G+ G   LK  ++GSV+  V+   + PV VVK+
Sbjct: 110 EEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKR 159


>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
 pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
           Teaabc Of Halomonas Elongata
          Length = 147

 Score = 34.7 bits (78), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 23/133 (17%)

Query: 45  GLEKG--EQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQ--KQIVVV 100
            LEKG   QQL   +G+ L  L  F   ++++   +   PE LDI +   +    +I V 
Sbjct: 18  ALEKGVGLQQL---TGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQ 74

Query: 101 MK----------------IFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSN 144
            K                +  G P   I     K     +VIG +G    K  ++GSV+ 
Sbjct: 75  AKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQ 134

Query: 145 YVVNNGSCPVTVV 157
            V  +  CPV VV
Sbjct: 135 RVAGSAHCPVLVV 147


>pdb|3RPE|A Chain A, 1.1 Angstrom Crystal Structure Of Putative Modulator Of
           Drug Activity (Mdab) From Yersinia Pestis Co92.
 pdb|3RPE|B Chain B, 1.1 Angstrom Crystal Structure Of Putative Modulator Of
           Drug Activity (Mdab) From Yersinia Pestis Co92
          Length = 218

 Score = 29.6 bits (65), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 15  ACSKKALQWAADNV----VRNGDHLILVTVVPEG-GLEKG-EQQLWEDSGSPLIPLAEFS 68
           A SK AL     NV    +R   H + +T V +G  +E   E  LW D+    +P     
Sbjct: 38  AHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAWWMG 97

Query: 69  EPTIMKKY 76
           EP I+KKY
Sbjct: 98  EPWILKKY 105


>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
 pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
           Tuberculosis
          Length = 309

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 124 LVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158
           +V+G  G G+    ++GSVS+ ++ +  CPV ++ 
Sbjct: 126 MVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIH 160



 Score = 26.6 bits (57), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 124 LVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161
           +V+G+RG G     ++GSV   V      PV V ++ +
Sbjct: 271 VVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARESL 308


>pdb|1FIM|A Chain A, Macrophage Migration Inhibitory Factor
          Length = 114

 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 41 VPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVAR 93
          VPEG L +  QQL + +G P   +A    P  +  +    DP  L  ++++ +
Sbjct: 14 VPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLXTFSGTSDPCALCSLHSIGK 66


>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
           Tuberculosis
          Length = 305

 Score = 28.1 bits (61), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 125 VIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158
           V+G  G G+    ++GSVS+ ++ +  CPV ++ 
Sbjct: 115 VVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIH 148



 Score = 26.9 bits (58), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 124 LVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161
           +V+G+RG G     ++GSV   V      PV V ++ +
Sbjct: 259 VVVGSRGRGGYAGXLVGSVGETVAQLARTPVIVARESL 296


>pdb|3DLO|A Chain A, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
 pdb|3DLO|B Chain B, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
 pdb|3DLO|C Chain C, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
 pdb|3DLO|D Chain D, Structure Of Universal Stress Protein From Archaeoglobus
           Fulgidus
          Length = 155

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 35/156 (22%)

Query: 9   VAVDF-SACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEF 67
           VAVD  S  +++ L++AA+     G  + +V  +P GG  K E             + E 
Sbjct: 29  VAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDED------------IIEA 76

Query: 68  SEP-----TIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLS 122
            E      +I++K GA+ +   L       R K+           P + I +  D++   
Sbjct: 77  KETLSWAVSIIRKEGAEGEEHLL------VRGKE-----------PPDDIVDFADEVDAI 119

Query: 123 CLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158
            +VIG R      + I GSV+  V+   + PV  +K
Sbjct: 120 AIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155


>pdb|3QTB|A Chain A, Structure Of The Universal Stress Protein From
           Archaeoglobus Fulgidus In Complex With Damp
 pdb|3QTB|B Chain B, Structure Of The Universal Stress Protein From
           Archaeoglobus Fulgidus In Complex With Damp
          Length = 155

 Score = 27.3 bits (59), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 35/156 (22%)

Query: 9   VAVDF-SACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEF 67
           VAVD  S  +++ L++AA+     G  + +V  +P GG  K E             + E 
Sbjct: 29  VAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDED------------IIEA 76

Query: 68  SEP-----TIMKKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLS 122
            E      +I++K GA+ +   L       R K+           P + I +  D++   
Sbjct: 77  KETLSWAVSIIRKEGAEGEEHLL------VRGKE-----------PPDDIVDFADEVDAI 119

Query: 123 CLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158
            +VIG R      + I GSV+  V+   + PV  +K
Sbjct: 120 AIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155


>pdb|2BR3|A Chain A, Cmci-D160 Mg
 pdb|2BR3|B Chain B, Cmci-D160 Mg
 pdb|2BR3|C Chain C, Cmci-D160 Mg
 pdb|2BR3|D Chain D, Cmci-D160 Mg
 pdb|2BR3|E Chain E, Cmci-D160 Mg
 pdb|2BR3|F Chain F, Cmci-D160 Mg
 pdb|2BR4|A Chain A, Cmci-D160 Mg-Sam
 pdb|2BR4|B Chain B, Cmci-D160 Mg-Sam
 pdb|2BR4|C Chain C, Cmci-D160 Mg-Sam
 pdb|2BR4|D Chain D, Cmci-D160 Mg-Sam
 pdb|2BR4|E Chain E, Cmci-D160 Mg-Sam
 pdb|2BR4|F Chain F, Cmci-D160 Mg-Sam
          Length = 236

 Score = 26.9 bits (58), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 12  DFSACSKKALQWAADNVVRNGDHLILVTVVP 42
           D  A +   ++WA D+++  GD+ I+  ++P
Sbjct: 160 DAHANTFNIMKWAVDHLLEEGDYFIIEDMIP 190


>pdb|1XX6|A Chain A, X-Ray Structure Of Clostridium Acetobutylicum Thymidine
           Kinase With Adp. Northeast Structural Genomics Target
           Car26.
 pdb|1XX6|B Chain B, X-Ray Structure Of Clostridium Acetobutylicum Thymidine
           Kinase With Adp. Northeast Structural Genomics Target
           Car26
          Length = 191

 Score = 26.9 bits (58), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 81  DPETLDIVNTVARQKQIVVVMKI---FWGDPR------EKICEAIDKIPLSCLVIGNRGL 131
           D E ++IVN +A   + V+   +   F G P         I E +DKI   C+V GN   
Sbjct: 94  DDEIVEIVNKIAESGRRVICAGLDXDFRGKPFGPIPELXAIAEFVDKIQAICVVCGNPAT 153

Query: 132 GKLKRAIMGSVSNY 145
            + +R I G  + Y
Sbjct: 154 -RTQRLINGKPAFY 166


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,251,206
Number of Sequences: 62578
Number of extensions: 215578
Number of successful extensions: 557
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 27
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)