Query 031168
Match_columns 164
No_of_seqs 146 out of 1836
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15456 universal stress prot 100.0 4.8E-29 1E-33 162.2 12.6 140 3-158 1-142 (142)
2 PRK15005 universal stress prot 100.0 2.7E-28 5.8E-33 159.0 13.0 142 3-158 1-144 (144)
3 PRK09982 universal stress prot 100.0 3.4E-28 7.4E-33 158.1 10.6 141 2-161 1-141 (142)
4 cd01989 STK_N The N-terminal d 100.0 2.6E-27 5.6E-32 154.7 13.0 142 6-160 1-146 (146)
5 PRK15118 universal stress glob 99.9 3E-27 6.6E-32 154.1 11.2 141 2-162 1-142 (144)
6 PRK10116 universal stress prot 99.9 3E-26 6.5E-31 149.0 11.4 140 2-161 1-141 (142)
7 PF00582 Usp: Universal stress 99.9 6E-26 1.3E-30 146.2 9.2 140 3-158 1-140 (140)
8 PRK11175 universal stress prot 99.9 2.6E-25 5.6E-30 161.4 11.5 146 2-160 1-147 (305)
9 cd01988 Na_H_Antiporter_C The 99.9 1.3E-24 2.8E-29 139.4 13.1 131 6-158 1-132 (132)
10 cd01987 USP_OKCHK USP domain i 99.9 7.1E-24 1.5E-28 134.8 11.2 123 6-158 1-124 (124)
11 PRK11175 universal stress prot 99.9 1.4E-22 3E-27 147.1 12.0 144 3-162 151-303 (305)
12 cd00293 USP_Like Usp: Universa 99.9 3.2E-21 6.9E-26 122.7 12.3 130 6-157 1-130 (130)
13 COG0589 UspA Universal stress 99.9 2E-20 4.3E-25 122.7 14.2 148 2-160 3-153 (154)
14 PRK12652 putative monovalent c 99.8 5.6E-18 1.2E-22 124.0 12.8 105 1-129 2-122 (357)
15 PRK10490 sensor protein KdpD; 99.5 1.6E-13 3.5E-18 112.1 13.2 124 5-160 251-375 (895)
16 COG2205 KdpD Osmosensitive K+ 99.5 8.6E-13 1.9E-17 103.5 11.8 127 5-161 249-376 (890)
17 cd01984 AANH_like Adenine nucl 98.7 9.9E-08 2.2E-12 56.4 6.9 84 7-156 1-85 (86)
18 PLN03159 cation/H(+) antiporte 98.3 6.7E-05 1.5E-09 61.7 15.2 144 5-159 459-615 (832)
19 TIGR02432 lysidine_TilS_N tRNA 97.7 0.00069 1.5E-08 45.9 9.9 93 6-131 1-110 (189)
20 PF01171 ATP_bind_3: PP-loop f 97.7 0.0016 3.4E-08 44.0 10.9 93 6-131 1-107 (182)
21 cd01992 PP-ATPase N-terminal d 97.5 0.0031 6.8E-08 42.5 10.1 93 6-131 1-107 (185)
22 PLN03159 cation/H(+) antiporte 97.4 0.0059 1.3E-07 50.6 13.2 41 4-44 630-670 (832)
23 PRK12342 hypothetical protein; 97.0 0.0062 1.3E-07 43.3 8.0 104 12-154 32-139 (254)
24 PRK03359 putative electron tra 97.0 0.0097 2.1E-07 42.4 8.6 104 13-154 34-142 (256)
25 cd01993 Alpha_ANH_like_II This 96.9 0.03 6.5E-07 37.6 10.6 92 6-130 1-116 (185)
26 COG0037 MesJ tRNA(Ile)-lysidin 96.9 0.03 6.5E-07 40.7 10.9 95 5-134 22-134 (298)
27 PF01012 ETF: Electron transfe 96.8 0.024 5.3E-07 37.5 9.0 87 6-130 1-100 (164)
28 PF00448 SRP54: SRP54-type pro 96.6 0.049 1.1E-06 37.3 9.6 112 7-157 5-120 (196)
29 PRK10696 tRNA 2-thiocytidine b 96.6 0.074 1.6E-06 38.0 10.9 92 4-131 29-142 (258)
30 COG2086 FixA Electron transfer 96.3 0.043 9.4E-07 39.2 8.0 101 11-155 33-142 (260)
31 PRK05253 sulfate adenylyltrans 95.7 0.21 4.5E-06 36.6 9.7 94 3-131 26-138 (301)
32 PRK13820 argininosuccinate syn 95.6 0.4 8.6E-06 36.6 11.2 90 3-131 1-120 (394)
33 COG0041 PurE Phosphoribosylcar 95.5 0.15 3.3E-06 33.2 7.4 69 84-160 17-89 (162)
34 PRK10660 tilS tRNA(Ile)-lysidi 95.5 0.68 1.5E-05 35.9 12.2 68 3-103 14-82 (436)
35 PRK14665 mnmA tRNA-specific 2- 95.3 0.93 2E-05 34.2 12.0 91 3-130 4-123 (360)
36 PRK10867 signal recognition pa 95.2 0.44 9.6E-06 36.8 10.4 93 8-137 105-200 (433)
37 TIGR00268 conserved hypothetic 95.0 0.56 1.2E-05 33.4 9.9 89 3-130 11-117 (252)
38 TIGR01162 purE phosphoribosyla 95.0 0.25 5.5E-06 32.4 7.4 71 83-161 12-86 (156)
39 TIGR00591 phr2 photolyase PhrI 94.9 0.18 3.8E-06 39.2 7.6 91 12-129 32-122 (454)
40 cd01985 ETF The electron trans 94.6 0.51 1.1E-05 31.7 8.5 23 109-131 80-102 (181)
41 COG0299 PurN Folate-dependent 94.5 0.97 2.1E-05 30.9 9.8 82 5-128 1-87 (200)
42 TIGR00959 ffh signal recogniti 94.2 1.2 2.5E-05 34.5 10.4 93 7-136 103-198 (428)
43 PLN00200 argininosuccinate syn 94.2 2 4.3E-05 33.0 11.8 37 4-43 5-41 (404)
44 TIGR02039 CysD sulfate adenyly 94.2 1.3 2.8E-05 32.5 10.1 92 4-130 19-129 (294)
45 PF00731 AIRC: AIR carboxylase 94.1 0.39 8.4E-06 31.4 6.6 72 82-161 13-88 (150)
46 cd01713 PAPS_reductase This do 93.9 1.1 2.4E-05 29.3 10.0 92 6-133 1-118 (173)
47 PRK05579 bifunctional phosphop 93.9 0.63 1.4E-05 35.6 8.4 38 1-39 3-40 (399)
48 PRK07313 phosphopantothenoylcy 93.6 0.56 1.2E-05 31.8 7.0 35 4-39 1-35 (182)
49 TIGR01425 SRP54_euk signal rec 93.3 1.8 4E-05 33.5 10.0 94 8-139 105-201 (429)
50 COG1606 ATP-utilizing enzymes 93.2 2.2 4.8E-05 30.5 9.7 90 3-130 16-123 (269)
51 PF13167 GTP-bdg_N: GTP-bindin 93.2 1.1 2.3E-05 27.0 7.0 68 80-155 5-84 (95)
52 cd01990 Alpha_ANH_like_I This 93.2 1.8 4E-05 29.5 9.3 86 7-130 1-105 (202)
53 PF00875 DNA_photolyase: DNA p 92.6 0.23 5E-06 32.9 4.0 112 17-158 13-124 (165)
54 PRK12563 sulfate adenylyltrans 92.6 2.4 5.1E-05 31.4 9.4 43 4-46 37-79 (312)
55 TIGR00032 argG argininosuccina 92.5 3.4 7.4E-05 31.7 10.4 34 6-43 1-34 (394)
56 cd01994 Alpha_ANH_like_IV This 92.4 2.4 5.1E-05 29.1 8.8 115 6-155 1-122 (194)
57 COG1066 Sms Predicted ATP-depe 92.4 4 8.7E-05 31.4 10.9 110 7-159 96-218 (456)
58 PRK11889 flhF flagellar biosyn 92.1 2.2 4.8E-05 32.8 8.9 59 84-142 284-342 (436)
59 cd01995 ExsB ExsB is a transcr 91.6 2.8 6E-05 27.7 10.0 86 6-131 1-87 (169)
60 COG0552 FtsY Signal recognitio 91.4 3.4 7.4E-05 30.8 9.0 94 7-139 143-240 (340)
61 TIGR02113 coaC_strep phosphopa 90.9 1.7 3.6E-05 29.4 6.7 34 5-39 1-34 (177)
62 TIGR02852 spore_dpaB dipicolin 90.8 0.67 1.5E-05 31.6 4.7 34 5-39 1-35 (187)
63 PRK13982 bifunctional SbtC-lik 90.7 2.8 6E-05 33.0 8.4 36 3-39 69-104 (475)
64 cd01986 Alpha_ANH_like Adenine 90.5 2.5 5.5E-05 25.4 7.8 34 7-44 1-34 (103)
65 COG0541 Ffh Signal recognition 90.3 7.1 0.00015 30.3 10.2 95 7-139 104-201 (451)
66 PRK13398 3-deoxy-7-phosphohept 89.7 6 0.00013 28.6 11.2 104 16-159 39-142 (266)
67 PRK00143 mnmA tRNA-specific 2- 89.7 7.1 0.00015 29.4 10.8 98 5-131 1-127 (346)
68 TIGR00342 thiazole biosynthesi 89.6 7.6 0.00016 29.5 10.9 36 4-43 172-207 (371)
69 TIGR02765 crypto_DASH cryptoch 89.6 2.1 4.6E-05 33.0 7.1 96 12-129 10-105 (429)
70 PRK08576 hypothetical protein; 89.3 6.8 0.00015 30.5 9.5 86 6-130 236-340 (438)
71 TIGR00884 guaA_Cterm GMP synth 88.8 8 0.00017 28.7 9.9 37 5-44 17-53 (311)
72 COG1927 Mtd Coenzyme F420-depe 88.7 5.1 0.00011 27.8 7.5 68 90-161 25-97 (277)
73 COG2876 AroA 3-deoxy-D-arabino 88.4 2.5 5.5E-05 30.4 6.1 95 7-133 47-141 (286)
74 PRK14664 tRNA-specific 2-thiou 88.1 9.7 0.00021 28.9 10.3 34 4-41 5-38 (362)
75 PRK06027 purU formyltetrahydro 88.0 8.6 0.00019 28.1 9.8 39 91-129 132-174 (286)
76 PLN02948 phosphoribosylaminoim 87.9 3.7 8.1E-05 33.1 7.6 70 83-160 424-497 (577)
77 TIGR03556 photolyase_8HDF deox 87.8 2.2 4.7E-05 33.5 6.2 87 15-129 13-99 (471)
78 cd01715 ETF_alpha The electron 87.8 6 0.00013 26.2 7.6 23 109-131 72-94 (168)
79 PRK05703 flhF flagellar biosyn 87.6 7.5 0.00016 30.2 8.9 84 12-135 230-314 (424)
80 PRK06029 3-octaprenyl-4-hydrox 87.5 1.4 3E-05 30.0 4.3 36 4-39 1-36 (185)
81 PRK00074 guaA GMP synthase; Re 87.5 11 0.00024 30.0 9.9 36 5-43 216-251 (511)
82 TIGR00521 coaBC_dfp phosphopan 87.5 5.9 0.00013 30.4 8.1 35 3-38 2-36 (390)
83 TIGR00064 ftsY signal recognit 87.2 9.3 0.0002 27.7 9.8 53 84-136 115-170 (272)
84 PRK14974 cell division protein 87.1 11 0.00023 28.3 9.9 55 84-138 183-240 (336)
85 PRK00994 F420-dependent methyl 86.5 6.5 0.00014 27.9 7.1 49 110-162 50-98 (277)
86 cd01712 ThiI ThiI is required 86.5 7.6 0.00016 25.9 10.4 35 6-44 1-35 (177)
87 PRK00771 signal recognition pa 86.1 14 0.00031 28.8 9.8 88 8-135 100-190 (437)
88 PF02844 GARS_N: Phosphoribosy 85.9 0.8 1.7E-05 27.8 2.3 24 106-129 48-71 (100)
89 PF02601 Exonuc_VII_L: Exonucl 85.9 2.8 6.2E-05 30.9 5.7 55 103-157 50-113 (319)
90 PF01596 Methyltransf_3: O-met 85.6 5.8 0.00012 27.5 6.7 49 82-130 80-131 (205)
91 cd02067 B12-binding B12 bindin 85.4 5.9 0.00013 24.5 6.2 45 85-130 16-60 (119)
92 PF03652 UPF0081: Uncharacteri 85.3 3.2 6.8E-05 26.7 5.0 55 106-160 37-96 (135)
93 KOG1650 Predicted K+/H+-antipo 85.2 4.6 0.0001 33.8 7.0 40 6-45 616-655 (769)
94 PRK00109 Holliday junction res 85.0 2 4.4E-05 27.7 4.0 53 108-160 42-98 (138)
95 PRK00919 GMP synthase subunit 84.9 14 0.0003 27.4 10.0 37 5-44 22-58 (307)
96 TIGR00655 PurU formyltetrahydr 84.8 13 0.00028 27.1 9.3 83 3-129 83-169 (280)
97 COG1646 Predicted phosphate-bi 84.5 7.9 0.00017 27.4 6.8 53 107-161 28-80 (240)
98 TIGR00034 aroFGH phospho-2-deh 84.2 14 0.0003 27.8 8.4 127 5-158 47-182 (344)
99 KOG3180 Electron transfer flav 84.0 6.2 0.00013 27.2 6.0 81 13-129 38-123 (254)
100 COG2102 Predicted ATPases of P 83.9 12 0.00027 26.2 7.8 91 6-129 2-95 (223)
101 PRK10416 signal recognition pa 83.4 16 0.00035 27.1 10.7 54 84-137 157-213 (318)
102 PRK12726 flagellar biosynthesi 83.4 18 0.00039 27.9 8.8 53 84-136 249-301 (407)
103 TIGR02069 cyanophycinase cyano 83.2 12 0.00026 26.8 7.7 94 17-148 13-110 (250)
104 COG1597 LCB5 Sphingosine kinas 83.1 12 0.00026 27.5 7.8 76 79-160 16-92 (301)
105 TIGR00853 pts-lac PTS system, 83.1 3.7 8E-05 24.6 4.3 66 84-160 19-84 (95)
106 PRK00509 argininosuccinate syn 83.0 19 0.00042 27.7 11.2 37 4-43 2-38 (399)
107 PRK11070 ssDNA exonuclease Rec 82.8 22 0.00048 28.9 9.6 94 4-131 69-162 (575)
108 PF01008 IF-2B: Initiation fac 82.3 16 0.00035 26.4 8.6 65 88-159 150-218 (282)
109 cd05565 PTS_IIB_lactose PTS_II 82.3 4.8 0.0001 24.4 4.6 66 83-159 15-80 (99)
110 KOG0781 Signal recognition par 82.0 8.8 0.00019 30.3 6.8 118 6-157 381-503 (587)
111 cd03115 SRP The signal recogni 81.9 12 0.00027 24.7 9.4 34 7-41 4-37 (173)
112 KOG1467 Translation initiation 81.8 24 0.00052 27.9 9.7 104 6-158 361-468 (556)
113 TIGR02699 archaeo_AfpA archaeo 81.4 9.3 0.0002 25.8 6.2 33 6-38 1-34 (174)
114 PLN02331 phosphoribosylglycina 81.3 16 0.00034 25.4 8.1 41 89-129 42-87 (207)
115 KOG0780 Signal recognition par 81.1 23 0.00051 27.3 9.3 57 83-139 143-202 (483)
116 PF12683 DUF3798: Protein of u 80.9 5.5 0.00012 28.8 5.1 91 6-130 4-96 (275)
117 TIGR00420 trmU tRNA (5-methyla 80.9 22 0.00048 26.9 10.9 97 5-130 1-127 (352)
118 cd01997 GMP_synthase_C The C-t 80.8 20 0.00043 26.4 9.5 35 6-43 1-35 (295)
119 PRK08349 hypothetical protein; 80.4 16 0.00034 25.0 8.3 34 5-42 1-34 (198)
120 PRK09590 celB cellobiose phosp 80.3 5.4 0.00012 24.4 4.4 67 84-159 17-83 (104)
121 PRK00779 ornithine carbamoyltr 80.0 22 0.00047 26.3 10.3 29 1-29 1-30 (304)
122 PRK13010 purU formyltetrahydro 79.9 21 0.00046 26.2 9.0 82 4-129 93-178 (289)
123 TIGR00930 2a30 K-Cl cotranspor 79.9 28 0.00062 30.2 9.8 95 6-130 577-677 (953)
124 PF07355 GRDB: Glycine/sarcosi 79.7 11 0.00023 28.4 6.4 72 84-157 36-117 (349)
125 PRK06731 flhF flagellar biosyn 79.7 21 0.00045 25.9 9.7 58 84-141 118-175 (270)
126 TIGR03573 WbuX N-acetyl sugar 79.3 24 0.00053 26.5 9.2 88 6-131 61-171 (343)
127 cd01714 ETF_beta The electron 79.0 18 0.0004 24.9 10.5 33 10-42 30-62 (202)
128 PRK08091 ribulose-phosphate 3- 78.8 20 0.00044 25.3 7.6 45 84-129 165-209 (228)
129 PF02887 PK_C: Pyruvate kinase 78.8 7 0.00015 24.2 4.7 44 108-160 4-48 (117)
130 PRK11914 diacylglycerol kinase 78.7 17 0.00036 26.7 7.4 73 82-161 25-98 (306)
131 cd02070 corrinoid_protein_B12- 78.5 12 0.00025 25.7 6.1 70 85-157 99-171 (201)
132 PRK14722 flhF flagellar biosyn 78.3 28 0.00061 26.6 9.3 51 84-137 182-232 (374)
133 COG0452 Dfp Phosphopantothenoy 78.1 11 0.00024 28.9 6.4 41 1-42 1-41 (392)
134 TIGR00250 RNAse_H_YqgF RNAse H 78.0 5.2 0.00011 25.5 4.0 54 107-160 35-92 (130)
135 PRK05920 aromatic acid decarbo 78.0 6.3 0.00014 27.3 4.6 36 3-39 2-37 (204)
136 PF02441 Flavoprotein: Flavopr 77.7 5.6 0.00012 25.1 4.1 33 5-38 1-33 (129)
137 COG1058 CinA Predicted nucleot 77.6 20 0.00043 25.8 7.1 71 80-155 18-91 (255)
138 PRK08305 spoVFB dipicolinate s 77.5 7.6 0.00016 26.7 4.9 37 2-39 3-40 (196)
139 TIGR01769 GGGP geranylgeranylg 77.4 6.2 0.00013 27.3 4.5 50 110-161 14-63 (205)
140 cd01996 Alpha_ANH_like_III Thi 77.3 17 0.00036 23.5 9.5 34 6-42 3-36 (154)
141 cd07044 CofD_YvcK Family of Co 77.1 5.2 0.00011 29.6 4.3 51 107-160 163-215 (309)
142 PRK08745 ribulose-phosphate 3- 77.1 9.6 0.00021 26.8 5.4 45 84-129 157-201 (223)
143 TIGR01826 CofD_related conserv 77.0 6.1 0.00013 29.3 4.6 52 107-161 161-214 (310)
144 COG1184 GCD2 Translation initi 76.9 27 0.00059 25.8 8.6 66 85-158 159-228 (301)
145 cd05564 PTS_IIB_chitobiose_lic 76.9 9 0.0002 22.9 4.6 66 84-160 15-80 (96)
146 PRK00286 xseA exodeoxyribonucl 76.8 8.2 0.00018 30.0 5.5 54 104-157 172-230 (438)
147 cd01998 tRNA_Me_trans tRNA met 76.7 30 0.00065 26.1 10.9 95 6-131 1-124 (349)
148 PF02310 B12-binding: B12 bind 76.2 15 0.00033 22.5 7.2 70 84-157 16-86 (121)
149 COG2379 GckA Putative glycerat 75.5 35 0.00075 26.3 8.4 130 26-159 170-315 (422)
150 PRK04527 argininosuccinate syn 75.5 35 0.00077 26.4 11.5 36 4-43 2-37 (400)
151 PF04244 DPRP: Deoxyribodipyri 75.3 9.7 0.00021 26.8 5.0 74 82-160 48-126 (224)
152 PRK14561 hypothetical protein; 75.0 24 0.00052 24.1 9.7 31 6-41 2-32 (194)
153 PRK09261 phospho-2-dehydro-3-d 74.5 35 0.00076 25.8 11.2 126 5-157 52-186 (349)
154 cd03364 TOPRIM_DnaG_primases T 74.4 13 0.00028 21.1 4.7 35 4-38 43-77 (79)
155 COG0655 WrbA Multimeric flavod 74.4 25 0.00055 24.2 7.1 40 5-44 4-43 (207)
156 PF00072 Response_reg: Respons 74.3 16 0.00034 21.7 7.3 71 82-160 8-80 (112)
157 PRK08185 hypothetical protein; 74.3 20 0.00044 26.2 6.6 71 91-161 7-78 (283)
158 smart00851 MGS MGS-like domain 74.0 14 0.0003 21.6 4.9 66 89-155 23-89 (90)
159 PRK12723 flagellar biosynthesi 74.0 38 0.00083 26.1 9.1 47 84-134 221-268 (388)
160 PRK10674 deoxyribodipyrimidine 73.9 22 0.00047 28.1 7.2 93 12-129 11-105 (472)
161 COG3360 Uncharacterized conser 73.9 10 0.00022 21.1 3.8 44 1-44 3-46 (71)
162 PRK13054 lipid kinase; Reviewe 73.8 32 0.0007 25.1 7.9 71 84-160 19-93 (300)
163 cd08550 GlyDH-like Glycerol_de 73.6 36 0.00078 25.6 8.7 68 84-159 37-109 (349)
164 TIGR01501 MthylAspMutase methy 73.2 16 0.00034 23.5 5.2 43 86-129 19-61 (134)
165 PRK14057 epimerase; Provisiona 73.1 13 0.00028 26.7 5.3 45 84-129 179-223 (254)
166 PF10087 DUF2325: Uncharacteri 73.0 17 0.00037 21.6 6.6 73 82-160 9-84 (97)
167 PRK09722 allulose-6-phosphate 72.6 16 0.00034 25.9 5.5 45 84-129 155-199 (229)
168 PF01884 PcrB: PcrB family; I 72.4 9.8 0.00021 26.9 4.5 51 107-161 19-69 (230)
169 cd02071 MM_CoA_mut_B12_BD meth 72.3 13 0.00028 23.2 4.7 46 84-130 15-60 (122)
170 cd07187 YvcK_like family of mo 72.1 8.9 0.00019 28.4 4.4 52 107-161 164-217 (308)
171 cd00958 DhnA Class I fructose- 72.0 30 0.00066 24.2 7.0 69 82-158 108-186 (235)
172 PF13662 Toprim_4: Toprim doma 72.0 7.2 0.00016 22.3 3.3 34 4-37 46-79 (81)
173 cd03145 GAT1_cyanophycinase Ty 71.7 31 0.00067 24.0 8.7 95 16-148 13-111 (217)
174 cd02072 Glm_B12_BD B12 binding 71.7 18 0.00039 23.0 5.2 43 86-129 17-59 (128)
175 TIGR00289 conserved hypothetic 71.3 33 0.00071 24.2 8.8 91 6-130 2-95 (222)
176 COG0036 Rpe Pentose-5-phosphat 71.2 17 0.00038 25.5 5.4 43 85-129 157-199 (220)
177 cd08170 GlyDH Glycerol dehydro 70.9 42 0.00091 25.2 8.0 70 83-159 36-109 (351)
178 PRK08673 3-deoxy-7-phosphohept 70.9 43 0.00092 25.3 8.7 66 82-159 143-208 (335)
179 PRK15411 rcsA colanic acid cap 70.8 31 0.00068 23.7 8.1 69 84-159 12-85 (207)
180 cd05569 PTS_IIB_fructose PTS_I 70.7 12 0.00027 22.3 4.2 47 84-131 17-64 (96)
181 PRK13059 putative lipid kinase 70.7 39 0.00084 24.7 7.7 71 83-160 19-91 (295)
182 PF03054 tRNA_Me_trans: tRNA m 70.6 45 0.00097 25.4 8.6 95 5-129 1-125 (356)
183 PRK12724 flagellar biosynthesi 70.4 47 0.001 26.0 8.0 46 84-133 267-312 (432)
184 TIGR00640 acid_CoA_mut_C methy 69.9 15 0.00033 23.5 4.6 63 84-149 18-80 (132)
185 COG0415 PhrB Deoxyribodipyrimi 69.9 27 0.0006 27.5 6.7 89 12-129 11-99 (461)
186 PF00885 DMRL_synthase: 6,7-di 69.7 25 0.00053 22.9 5.6 74 82-155 19-103 (144)
187 PF02142 MGS: MGS-like domain 69.6 4.3 9.4E-05 24.1 2.0 67 88-155 22-94 (95)
188 PF01933 UPF0052: Uncharacteri 69.6 8.9 0.00019 28.3 4.0 52 107-160 172-224 (300)
189 COG0420 SbcD DNA repair exonuc 69.3 9.8 0.00021 29.0 4.3 18 110-127 30-47 (390)
190 PRK08883 ribulose-phosphate 3- 69.2 21 0.00046 25.0 5.6 45 84-129 153-197 (220)
191 PRK02261 methylaspartate mutas 69.1 28 0.0006 22.4 6.5 63 84-149 19-81 (137)
192 PF03575 Peptidase_S51: Peptid 69.0 6 0.00013 25.8 2.8 62 85-148 2-63 (154)
193 cd00532 MGS-like MGS-like doma 68.9 24 0.00052 21.6 6.6 66 91-156 37-104 (112)
194 PLN02828 formyltetrahydrofolat 68.8 42 0.00092 24.4 9.7 86 3-129 69-156 (268)
195 PRK02628 nadE NAD synthetase; 68.2 38 0.00082 28.2 7.6 39 2-40 359-400 (679)
196 PRK06806 fructose-bisphosphate 68.2 45 0.00097 24.4 7.5 74 88-161 9-84 (281)
197 COG1570 XseA Exonuclease VII, 68.1 17 0.00037 28.3 5.2 55 103-157 171-231 (440)
198 PF00834 Ribul_P_3_epim: Ribul 68.1 6.3 0.00014 27.2 2.8 45 83-128 151-195 (201)
199 TIGR00290 MJ0570_dom MJ0570-re 67.9 40 0.00087 23.8 9.3 90 6-129 2-94 (223)
200 PRK09195 gatY tagatose-bisphos 67.8 39 0.00085 24.8 6.9 72 90-161 11-84 (284)
201 TIGR00237 xseA exodeoxyribonuc 67.4 32 0.00069 26.9 6.7 54 104-157 166-225 (432)
202 PF02568 ThiI: Thiamine biosyn 67.0 39 0.00084 23.3 11.1 36 5-44 4-39 (197)
203 PRK12737 gatY tagatose-bisphos 66.9 44 0.00094 24.5 7.0 74 88-161 9-84 (284)
204 PRK15424 propionate catabolism 66.8 34 0.00073 27.6 6.9 67 83-161 24-93 (538)
205 cd00950 DHDPS Dihydrodipicolin 66.7 44 0.00094 24.2 7.1 77 82-159 56-134 (284)
206 TIGR01858 tag_bisphos_ald clas 66.4 49 0.0011 24.3 7.1 72 90-161 9-82 (282)
207 PRK13337 putative lipid kinase 66.3 49 0.0011 24.3 8.4 72 83-160 19-92 (304)
208 TIGR02766 crypt_chrom_pln cryp 66.3 33 0.00072 27.0 6.8 48 81-129 49-96 (475)
209 cd06361 PBP1_GPC6A_like Ligand 66.0 59 0.0013 25.0 11.0 44 88-131 226-269 (403)
210 PRK12858 tagatose 1,6-diphosph 66.0 43 0.00094 25.3 7.0 79 82-160 142-250 (340)
211 PRK06801 hypothetical protein; 65.6 51 0.0011 24.2 7.4 73 89-161 10-84 (286)
212 PRK09423 gldA glycerol dehydro 65.4 55 0.0012 24.8 7.6 68 84-159 44-116 (366)
213 cd07186 CofD_like LPPG:FO 2-ph 65.3 25 0.00055 26.0 5.5 51 107-159 172-223 (303)
214 cd06318 PBP1_ABC_sugar_binding 65.3 46 0.00099 23.5 7.4 72 82-159 15-88 (282)
215 TIGR02370 pyl_corrinoid methyl 65.2 34 0.00073 23.5 5.9 63 84-149 100-162 (197)
216 cd00578 L-fuc_L-ara-isomerases 65.1 35 0.00077 26.6 6.7 74 82-161 22-98 (452)
217 PRK03170 dihydrodipicolinate s 65.1 51 0.0011 24.0 7.5 76 82-158 57-134 (292)
218 TIGR00177 molyb_syn molybdenum 65.1 33 0.00073 22.1 5.6 47 82-128 26-74 (144)
219 COG0482 TrmU Predicted tRNA(5- 65.0 60 0.0013 24.7 9.8 98 2-131 1-127 (356)
220 PRK13055 putative lipid kinase 64.7 57 0.0012 24.4 8.0 73 82-160 19-94 (334)
221 PRK12857 fructose-1,6-bisphosp 64.7 54 0.0012 24.1 7.1 74 88-161 9-84 (284)
222 TIGR01918 various_sel_PB selen 64.3 41 0.00089 26.2 6.6 70 86-157 34-113 (431)
223 cd06375 PBP1_mGluR_groupII Lig 64.3 68 0.0015 25.1 10.8 24 107-130 243-266 (458)
224 COG0816 Predicted endonuclease 64.2 24 0.00052 22.9 4.7 53 108-160 41-97 (141)
225 COG0191 Fba Fructose/tagatose 64.2 46 0.00099 24.5 6.5 76 86-161 7-85 (286)
226 TIGR00829 FRU PTS system, fruc 63.8 18 0.00039 21.1 3.8 45 85-130 17-62 (85)
227 PRK11921 metallo-beta-lactamas 63.7 65 0.0014 24.7 9.4 49 82-132 262-312 (394)
228 TIGR01917 gly_red_sel_B glycin 63.6 46 0.00099 25.9 6.7 65 92-157 39-113 (431)
229 COG0426 FpaA Uncharacterized f 63.6 67 0.0014 24.8 9.8 75 82-158 261-337 (388)
230 PRK13011 formyltetrahydrofolat 63.4 57 0.0012 23.9 9.3 38 92-129 133-174 (286)
231 TIGR02329 propionate_PrpR prop 63.3 64 0.0014 26.0 7.8 66 84-161 15-83 (526)
232 PRK12822 phospho-2-dehydro-3-d 63.2 64 0.0014 24.5 9.2 127 5-158 52-187 (356)
233 TIGR03702 lip_kinase_YegS lipi 63.2 56 0.0012 23.8 7.8 70 85-160 16-89 (293)
234 PRK06850 hypothetical protein; 63.1 23 0.00049 28.3 5.2 71 6-104 36-111 (507)
235 PRK12755 phospho-2-dehydro-3-d 63.1 65 0.0014 24.5 10.8 126 5-157 53-187 (353)
236 PRK13305 sgbH 3-keto-L-gulonat 62.9 40 0.00086 23.7 6.0 32 4-40 3-34 (218)
237 PRK13057 putative lipid kinase 62.8 41 0.00089 24.4 6.3 69 84-160 14-83 (287)
238 PRK05720 mtnA methylthioribose 62.7 65 0.0014 24.4 7.9 66 89-159 199-267 (344)
239 PRK08417 dihydroorotase; Provi 62.5 19 0.00041 27.5 4.7 28 17-44 180-207 (386)
240 COG0036 Rpe Pentose-5-phosphat 62.3 52 0.0011 23.2 8.6 62 84-147 97-158 (220)
241 COG0391 Uncharacterized conser 62.1 21 0.00045 26.7 4.6 50 107-159 178-229 (323)
242 cd00946 FBP_aldolase_IIA Class 62.1 65 0.0014 24.4 7.2 72 90-161 9-97 (345)
243 PRK06988 putative formyltransf 61.9 63 0.0014 24.0 8.3 41 86-129 45-86 (312)
244 PF01207 Dus: Dihydrouridine s 61.8 63 0.0014 23.9 7.6 74 83-156 109-188 (309)
245 PRK10481 hypothetical protein; 61.7 54 0.0012 23.1 6.9 65 84-156 142-211 (224)
246 PRK00211 sulfur relay protein 61.6 27 0.00058 21.8 4.5 39 4-43 1-43 (119)
247 PRK05772 translation initiatio 61.6 71 0.0015 24.4 8.4 64 91-159 222-288 (363)
248 cd00947 TBP_aldolase_IIB Tagat 61.6 52 0.0011 24.0 6.5 72 90-161 6-79 (276)
249 PRK10653 D-ribose transporter 61.5 43 0.00094 24.0 6.3 72 82-159 42-115 (295)
250 COG0615 TagD Cytidylyltransfer 61.5 42 0.00091 21.8 5.5 36 96-131 62-97 (140)
251 COG0301 ThiI Thiamine biosynth 61.5 52 0.0011 25.3 6.7 35 6-44 177-211 (383)
252 PRK08335 translation initiatio 61.4 62 0.0013 23.7 9.5 65 88-159 152-219 (275)
253 PRK02929 L-arabinose isomerase 61.2 60 0.0013 26.0 7.3 56 97-159 44-105 (499)
254 PF01220 DHquinase_II: Dehydro 61.0 32 0.0007 22.3 4.8 77 75-158 21-99 (140)
255 smart00852 MoCF_biosynth Proba 61.0 40 0.00086 21.3 6.2 46 82-127 17-64 (135)
256 cd01537 PBP1_Repressors_Sugar_ 60.9 52 0.0011 22.6 8.1 72 82-160 15-88 (264)
257 PF03358 FMN_red: NADPH-depend 60.7 42 0.0009 21.5 5.9 49 82-132 17-82 (152)
258 COG3969 Predicted phosphoadeno 60.5 19 0.00041 27.2 4.1 42 3-44 26-68 (407)
259 PF00070 Pyr_redox: Pyridine n 60.3 29 0.00063 19.5 5.6 51 18-101 9-59 (80)
260 TIGR02855 spore_yabG sporulati 60.1 39 0.00085 24.6 5.5 49 82-130 114-163 (283)
261 PF02878 PGM_PMM_I: Phosphoglu 59.8 16 0.00035 23.2 3.4 41 4-44 40-80 (137)
262 PRK14072 6-phosphofructokinase 59.7 82 0.0018 24.6 8.8 38 1-39 1-42 (416)
263 COG3340 PepE Peptidase E [Amin 59.6 59 0.0013 22.9 9.4 46 82-129 48-93 (224)
264 TIGR00696 wecB_tagA_cpsF bacte 59.6 52 0.0011 22.2 8.8 46 83-130 59-110 (177)
265 TIGR00646 MG010 DNA primase-re 59.4 28 0.0006 24.5 4.6 37 4-40 154-190 (218)
266 PRK12756 phospho-2-dehydro-3-d 59.3 76 0.0016 24.1 7.6 127 5-158 51-186 (348)
267 PHA02031 putative DnaG-like pr 58.8 20 0.00044 25.9 4.0 37 5-41 207-243 (266)
268 KOG1336 Monodehydroascorbate/f 58.7 40 0.00087 26.6 5.8 93 5-132 213-313 (478)
269 TIGR00583 mre11 DNA repair pro 58.5 27 0.00059 27.0 4.9 12 150-161 109-120 (405)
270 cd02071 MM_CoA_mut_B12_BD meth 58.4 40 0.00087 21.0 5.0 35 6-40 1-35 (122)
271 PRK08535 translation initiatio 58.3 74 0.0016 23.6 9.6 65 88-159 163-230 (310)
272 PRK06371 translation initiatio 58.0 79 0.0017 23.8 8.3 66 89-159 189-257 (329)
273 cd00951 KDGDH 5-dehydro-4-deox 57.8 72 0.0016 23.3 7.4 73 84-158 58-132 (289)
274 cd06322 PBP1_ABC_sugar_binding 57.6 63 0.0014 22.6 6.7 72 82-159 15-88 (267)
275 TIGR00524 eIF-2B_rel eIF-2B al 57.5 77 0.0017 23.5 9.0 67 88-159 170-239 (303)
276 KOG1466 Translation initiation 57.3 73 0.0016 23.2 9.0 67 85-159 170-240 (313)
277 PF14639 YqgF: Holliday-juncti 57.2 15 0.00032 24.1 2.9 19 110-128 53-71 (150)
278 PRK00861 putative lipid kinase 57.2 72 0.0016 23.3 6.8 69 84-160 21-90 (300)
279 COG0300 DltE Short-chain dehyd 57.1 73 0.0016 23.2 9.2 48 82-129 40-93 (265)
280 cd01999 Argininosuccinate_Synt 57.0 89 0.0019 24.1 10.1 34 7-43 1-34 (385)
281 TIGR00619 sbcd exonuclease Sbc 57.0 21 0.00045 25.5 3.9 22 84-107 27-48 (253)
282 KOG1552 Predicted alpha/beta h 56.9 62 0.0013 23.4 6.1 77 84-162 115-203 (258)
283 cd02069 methionine_synthase_B1 56.8 64 0.0014 22.5 6.2 69 85-156 105-174 (213)
284 cd05403 NT_KNTase_like Nucleot 56.5 17 0.00036 20.9 2.9 34 98-133 17-50 (93)
285 COG0540 PyrB Aspartate carbamo 56.4 82 0.0018 23.5 8.3 28 2-29 5-33 (316)
286 PLN02285 methionyl-tRNA formyl 56.4 84 0.0018 23.6 7.3 43 87-129 59-102 (334)
287 KOG0780 Signal recognition par 56.3 60 0.0013 25.3 6.2 73 82-160 199-276 (483)
288 COG0745 OmpR Response regulato 56.2 69 0.0015 22.6 7.1 71 82-161 10-82 (229)
289 COG1504 Uncharacterized conser 56.1 31 0.00068 21.4 3.9 38 119-159 60-97 (121)
290 cd02065 B12-binding_like B12 b 56.0 45 0.00097 20.4 5.7 71 83-157 14-86 (125)
291 PF05582 Peptidase_U57: YabG p 55.9 53 0.0011 24.1 5.7 48 82-129 115-163 (287)
292 TIGR03183 DNA_S_dndC putative 55.8 45 0.00099 26.2 5.7 72 5-104 14-90 (447)
293 PF04459 DUF512: Protein of un 55.5 68 0.0015 22.3 7.4 79 83-161 110-203 (204)
294 PRK06849 hypothetical protein; 55.4 53 0.0012 25.0 6.1 37 1-41 1-37 (389)
295 TIGR00511 ribulose_e2b2 ribose 55.4 83 0.0018 23.3 9.6 66 87-159 157-225 (301)
296 cd00885 cinA Competence-damage 55.3 61 0.0013 21.7 6.3 46 82-127 18-65 (170)
297 TIGR03499 FlhF flagellar biosy 55.2 79 0.0017 23.0 6.7 28 13-40 204-232 (282)
298 TIGR02634 xylF D-xylose ABC tr 55.2 79 0.0017 22.9 7.4 72 82-159 14-87 (302)
299 cd01539 PBP1_GGBP Periplasmic 55.1 78 0.0017 22.9 7.1 72 82-159 15-90 (303)
300 TIGR00512 salvage_mtnA S-methy 55.1 89 0.0019 23.6 8.4 66 89-159 199-267 (331)
301 TIGR00147 lipid kinase, YegS/R 54.9 79 0.0017 22.9 8.0 73 82-160 18-92 (293)
302 COG1440 CelA Phosphotransferas 54.7 47 0.001 20.3 5.2 65 84-159 17-81 (102)
303 cd00954 NAL N-Acetylneuraminic 54.6 81 0.0018 23.0 8.3 50 110-159 86-136 (288)
304 TIGR00364 exsB protein. This p 54.4 67 0.0014 21.9 9.9 21 110-130 101-121 (201)
305 PRK07627 dihydroorotase; Provi 54.3 31 0.00068 26.7 4.7 28 17-44 211-238 (425)
306 PRK01033 imidazole glycerol ph 54.0 80 0.0017 22.7 8.1 41 2-42 1-54 (258)
307 PF03162 Y_phosphatase2: Tyros 53.9 40 0.00087 22.4 4.6 72 90-161 26-101 (164)
308 PF14582 Metallophos_3: Metall 53.8 28 0.00061 24.8 3.9 18 145-162 83-100 (255)
309 PRK09197 fructose-bisphosphate 53.7 97 0.0021 23.6 7.3 72 90-161 14-102 (350)
310 cd01972 Nitrogenase_VnfE_like 53.7 26 0.00056 27.2 4.2 18 23-40 14-31 (426)
311 cd01971 Nitrogenase_VnfN_like 53.7 26 0.00056 27.2 4.2 50 82-131 72-127 (427)
312 PRK09875 putative hydrolase; P 53.5 48 0.001 24.4 5.3 50 82-131 138-189 (292)
313 PRK05395 3-dehydroquinate dehy 53.3 46 0.00099 21.8 4.6 73 79-158 26-100 (146)
314 PRK02261 methylaspartate mutas 53.3 58 0.0013 20.9 6.6 38 3-40 2-39 (137)
315 COG0788 PurU Formyltetrahydrof 53.2 31 0.00067 25.1 4.1 44 86-129 128-175 (287)
316 COG1201 Lhr Lhr-like helicases 53.1 58 0.0013 27.8 6.2 87 6-128 39-131 (814)
317 cd01967 Nitrogenase_MoFe_alpha 53.1 35 0.00076 26.1 4.8 25 106-130 103-128 (406)
318 cd08173 Gro1PDH Sn-glycerol-1- 52.8 95 0.0021 23.2 7.0 68 83-159 39-110 (339)
319 PF11965 DUF3479: Domain of un 52.6 68 0.0015 21.5 8.0 48 82-129 45-94 (164)
320 TIGR01283 nifE nitrogenase mol 52.6 27 0.00058 27.4 4.2 12 29-40 55-66 (456)
321 PRK14723 flhF flagellar biosyn 52.5 82 0.0018 26.8 6.9 51 84-137 230-280 (767)
322 PRK10474 putative PTS system f 52.5 37 0.00081 19.9 3.9 45 85-130 3-48 (88)
323 TIGR00330 glpX fructose-1,6-bi 52.5 96 0.0021 23.1 8.6 43 85-129 166-208 (321)
324 PF00793 DAHP_synth_1: DAHP sy 52.4 89 0.0019 22.8 8.8 65 83-159 75-139 (270)
325 TIGR03156 GTP_HflX GTP-binding 52.4 1E+02 0.0022 23.4 8.8 65 83-155 17-93 (351)
326 PRK12388 fructose-1,6-bisphosp 52.2 98 0.0021 23.1 8.6 43 85-129 166-208 (321)
327 COG1184 GCD2 Translation initi 52.1 64 0.0014 23.9 5.7 52 105-160 128-179 (301)
328 cd06315 PBP1_ABC_sugar_binding 52.1 73 0.0016 22.7 6.1 72 82-159 16-89 (280)
329 cd06301 PBP1_rhizopine_binding 52.0 80 0.0017 22.1 6.8 72 82-159 15-89 (272)
330 PF13362 Toprim_3: Toprim doma 51.9 48 0.001 19.5 4.7 38 3-40 40-79 (96)
331 PF01507 PAPS_reduct: Phosphoa 51.8 65 0.0014 21.0 8.0 34 6-43 1-34 (174)
332 PRK13396 3-deoxy-7-phosphohept 51.8 1.1E+02 0.0023 23.4 10.1 66 82-159 151-216 (352)
333 PRK06455 riboflavin synthase; 51.8 68 0.0015 21.2 7.3 75 84-158 16-98 (155)
334 cd01968 Nitrogenase_NifE_I Nit 51.7 39 0.00084 26.0 4.9 25 106-130 102-127 (410)
335 PRK07315 fructose-bisphosphate 51.6 74 0.0016 23.5 6.0 73 88-160 9-86 (293)
336 PF01116 F_bP_aldolase: Fructo 51.5 21 0.00046 26.2 3.2 71 87-157 7-79 (287)
337 PRK07998 gatY putative fructos 51.5 94 0.002 22.9 6.5 73 89-161 10-84 (283)
338 cd08171 GlyDH-like2 Glycerol d 51.5 98 0.0021 23.2 6.9 68 84-159 37-110 (345)
339 PRK00766 hypothetical protein; 51.4 68 0.0015 22.1 5.4 58 96-157 42-104 (194)
340 PRK05282 (alpha)-aspartyl dipe 51.4 54 0.0012 23.3 5.1 50 83-138 48-97 (233)
341 PRK12738 kbaY tagatose-bisphos 51.4 96 0.0021 22.8 7.1 72 90-161 11-84 (286)
342 PRK11058 GTPase HflX; Provisio 51.3 1.1E+02 0.0024 24.0 7.2 66 82-155 24-101 (426)
343 PRK05234 mgsA methylglyoxal sy 51.3 65 0.0014 20.9 10.4 105 1-156 1-111 (142)
344 COG2185 Sbm Methylmalonyl-CoA 51.2 67 0.0015 21.0 6.1 70 83-155 27-96 (143)
345 PF10649 DUF2478: Protein of u 51.1 31 0.00068 22.9 3.7 48 109-157 82-129 (159)
346 TIGR01859 fruc_bis_ald_ fructo 51.1 96 0.0021 22.7 7.0 72 90-161 9-84 (282)
347 PRK13015 3-dehydroquinate dehy 50.9 64 0.0014 21.1 5.0 73 79-158 26-100 (146)
348 PHA02546 47 endonuclease subun 50.8 27 0.00059 26.2 3.8 14 84-97 27-40 (340)
349 PF09043 Lys-AminoMut_A: D-Lys 50.7 65 0.0014 25.2 5.7 46 97-142 147-195 (509)
350 PF00994 MoCF_biosynth: Probab 50.7 64 0.0014 20.6 5.7 48 81-128 15-64 (144)
351 PRK13606 LPPG:FO 2-phospho-L-l 50.6 64 0.0014 24.0 5.5 47 108-159 175-223 (303)
352 PF01261 AP_endonuc_2: Xylose 50.5 22 0.00047 23.9 3.1 80 18-122 70-157 (213)
353 cd01125 repA Hexameric Replica 50.5 86 0.0019 22.0 9.3 24 6-29 4-27 (239)
354 CHL00076 chlB photochlorophyll 50.4 28 0.0006 27.8 4.0 17 26-42 18-34 (513)
355 cd02812 PcrB_like PcrB_like pr 50.4 39 0.00085 23.7 4.3 50 109-161 14-64 (219)
356 cd04795 SIS SIS domain. SIS (S 50.4 40 0.00086 19.0 3.8 35 4-39 47-81 (87)
357 COG2262 HflX GTPases [General 50.2 1.2E+02 0.0026 23.6 8.9 49 81-129 18-78 (411)
358 PRK03670 competence damage-ind 50.1 72 0.0016 23.0 5.7 46 82-127 19-67 (252)
359 TIGR00421 ubiX_pad polyprenyl 50.1 33 0.00071 23.3 3.8 33 6-39 1-33 (181)
360 cd01974 Nitrogenase_MoFe_beta 49.8 1.2E+02 0.0027 23.6 9.2 45 84-128 341-385 (435)
361 PF13433 Peripla_BP_5: Peripla 49.8 1.2E+02 0.0025 23.3 7.1 104 16-157 117-224 (363)
362 smart00732 YqgFc Likely ribonu 49.8 51 0.0011 19.2 4.5 54 108-161 39-94 (99)
363 cd01424 MGS_CPS_II Methylglyox 49.7 57 0.0012 19.7 6.5 65 89-156 36-100 (110)
364 cd01538 PBP1_ABC_xylose_bindin 49.7 94 0.002 22.2 7.4 72 82-159 15-88 (288)
365 TIGR01286 nifK nitrogenase mol 49.6 1.4E+02 0.003 24.1 9.0 46 84-129 401-446 (515)
366 PF01993 MTD: methylene-5,6,7, 49.6 17 0.00038 25.9 2.4 48 110-161 49-96 (276)
367 PF07476 MAAL_C: Methylasparta 49.5 80 0.0017 22.4 5.5 54 82-135 122-176 (248)
368 cd03557 L-arabinose_isomerase 49.4 49 0.0011 26.3 5.1 48 107-160 49-100 (484)
369 PF05728 UPF0227: Uncharacteri 49.3 81 0.0018 21.5 5.6 69 84-160 16-90 (187)
370 PF01791 DeoC: DeoC/LacD famil 49.0 88 0.0019 22.0 6.0 75 82-157 111-199 (236)
371 PRK08384 thiamine biosynthesis 49.0 1.2E+02 0.0026 23.3 10.0 35 4-42 180-214 (381)
372 cd00453 FTBP_aldolase_II Fruct 49.0 69 0.0015 24.2 5.5 72 90-161 6-95 (340)
373 COG0381 WecB UDP-N-acetylgluco 48.9 1.2E+02 0.0027 23.4 7.8 43 2-44 1-43 (383)
374 TIGR03590 PseG pseudaminic aci 48.9 1E+02 0.0022 22.3 9.9 14 5-18 171-184 (279)
375 PF13727 CoA_binding_3: CoA-bi 48.8 19 0.00042 23.4 2.6 46 109-158 130-175 (175)
376 cd06323 PBP1_ribose_binding Pe 48.8 89 0.0019 21.7 6.3 72 82-159 15-88 (268)
377 cd08199 EEVS 2-epi-5-epi-valio 48.6 1.2E+02 0.0025 23.0 7.1 68 84-159 41-122 (354)
378 PRK07369 dihydroorotase; Provi 48.5 42 0.00091 26.0 4.6 28 17-44 212-239 (418)
379 PRK05647 purN phosphoribosylgl 48.5 88 0.0019 21.6 9.3 41 88-128 43-88 (200)
380 cd06320 PBP1_allose_binding Pe 48.0 95 0.0021 21.8 6.2 72 82-159 15-90 (275)
381 cd06277 PBP1_LacI_like_1 Ligan 48.0 94 0.002 21.7 8.4 69 82-159 18-88 (268)
382 cd01029 TOPRIM_primases TOPRIM 47.7 49 0.0011 18.4 4.7 32 5-36 44-75 (79)
383 COG1197 Mfd Transcription-repa 47.3 1.2E+02 0.0026 27.1 7.2 49 81-130 656-706 (1139)
384 PRK02090 phosphoadenosine phos 47.2 1E+02 0.0022 21.9 6.7 36 5-44 41-76 (241)
385 PRK12361 hypothetical protein; 47.2 1.2E+02 0.0026 24.5 7.1 71 83-161 260-331 (547)
386 TIGR01768 GGGP-family geranylg 47.1 45 0.00097 23.5 4.2 50 109-161 16-65 (223)
387 PLN02347 GMP synthetase 47.0 1.6E+02 0.0034 24.0 8.3 38 4-44 229-266 (536)
388 PRK13397 3-deoxy-7-phosphohept 47.0 1.1E+02 0.0023 22.1 9.4 66 82-159 65-130 (250)
389 PLN02589 caffeoyl-CoA O-methyl 46.9 1.1E+02 0.0023 22.0 8.9 49 83-131 115-167 (247)
390 COG0151 PurD Phosphoribosylami 46.8 19 0.00041 27.9 2.4 23 107-129 50-72 (428)
391 PRK08334 translation initiatio 46.5 1.3E+02 0.0028 23.0 8.6 64 90-158 213-279 (356)
392 PF01380 SIS: SIS domain SIS d 46.4 58 0.0013 20.0 4.4 39 3-42 52-90 (131)
393 TIGR00381 cdhD CO dehydrogenas 46.1 87 0.0019 24.2 5.7 51 107-157 140-194 (389)
394 cd06319 PBP1_ABC_sugar_binding 46.0 1E+02 0.0022 21.6 7.0 72 82-159 15-88 (277)
395 cd06309 PBP1_YtfQ_like Peripla 45.9 1E+02 0.0022 21.6 7.1 72 82-159 15-88 (273)
396 COG1162 Predicted GTPases [Gen 45.7 1.2E+02 0.0027 22.5 7.6 90 7-132 85-176 (301)
397 PF13407 Peripla_BP_4: Peripla 45.7 1E+02 0.0022 21.4 7.1 73 82-160 14-89 (257)
398 COG0608 RecJ Single-stranded D 45.6 1.5E+02 0.0033 23.5 8.9 39 91-129 84-122 (491)
399 PRK13399 fructose-1,6-bisphosp 45.6 1.3E+02 0.0029 22.8 7.1 74 88-161 9-85 (347)
400 cd06313 PBP1_ABC_sugar_binding 45.1 1E+02 0.0022 21.8 5.9 72 82-159 15-88 (272)
401 PRK06372 translation initiatio 45.0 1.2E+02 0.0025 22.0 6.4 66 87-159 125-193 (253)
402 TIGR01859 fruc_bis_ald_ fructo 44.9 1.1E+02 0.0025 22.4 6.1 83 17-131 25-108 (282)
403 PRK13794 hypothetical protein; 44.8 1.6E+02 0.0035 23.5 7.8 37 5-44 248-284 (479)
404 TIGR01521 FruBisAldo_II_B fruc 44.8 1.4E+02 0.003 22.8 7.1 73 89-161 8-83 (347)
405 COG1445 FrwB Phosphotransferas 44.8 44 0.00095 21.1 3.4 45 85-130 21-66 (122)
406 PRK01565 thiamine biosynthesis 44.7 1.4E+02 0.0031 23.0 7.5 34 5-42 177-210 (394)
407 COG0107 HisF Imidazoleglycerol 44.7 55 0.0012 23.4 4.2 60 96-156 20-79 (256)
408 PLN02476 O-methyltransferase 44.7 1.2E+02 0.0027 22.2 9.4 49 82-130 153-204 (278)
409 PRK12727 flagellar biosynthesi 44.6 1.7E+02 0.0038 23.9 8.3 34 7-40 352-388 (559)
410 PRK08005 epimerase; Validated 44.4 50 0.0011 23.0 4.0 41 83-128 152-192 (210)
411 PRK04169 geranylgeranylglycery 44.4 52 0.0011 23.4 4.2 48 111-161 23-70 (232)
412 TIGR00167 cbbA ketose-bisphosp 44.1 1.3E+02 0.0028 22.2 7.1 74 88-161 9-87 (288)
413 PRK15454 ethanol dehydrogenase 44.1 1.3E+02 0.0029 23.1 6.7 43 84-126 65-112 (395)
414 PF11215 DUF3010: Protein of u 43.9 88 0.0019 20.3 4.7 18 112-129 53-70 (138)
415 PRK14478 nitrogenase molybdenu 43.9 44 0.00096 26.4 4.2 49 82-130 105-160 (475)
416 cd06295 PBP1_CelR Ligand bindi 43.8 1.1E+02 0.0024 21.4 9.0 70 82-159 26-95 (275)
417 TIGR00715 precor6x_red precorr 43.8 1E+02 0.0022 22.3 5.6 63 91-160 166-232 (256)
418 PLN02496 probable phosphopanto 43.8 64 0.0014 22.5 4.5 35 4-40 19-53 (209)
419 cd00840 MPP_Mre11_N Mre11 nucl 43.6 57 0.0012 22.2 4.4 22 84-107 29-50 (223)
420 TIGR02990 ectoine_eutA ectoine 43.5 1.2E+02 0.0026 21.6 7.1 70 81-156 130-211 (239)
421 TIGR00552 nadE NAD+ synthetase 43.4 1.2E+02 0.0026 21.6 7.8 37 3-42 21-57 (250)
422 COG4635 HemG Flavodoxin [Energ 43.0 33 0.00071 23.0 2.8 47 80-132 13-59 (175)
423 PF03808 Glyco_tran_WecB: Glyc 43.0 99 0.0022 20.6 10.5 69 82-156 58-131 (172)
424 PRK06247 pyruvate kinase; Prov 43.0 81 0.0018 25.1 5.4 44 108-160 357-401 (476)
425 cd06284 PBP1_LacI_like_6 Ligan 43.0 1.1E+02 0.0024 21.2 8.1 68 82-158 15-84 (267)
426 KOG1014 17 beta-hydroxysteroid 42.8 1.4E+02 0.0031 22.3 7.6 45 82-126 83-132 (312)
427 smart00493 TOPRIM topoisomeras 42.7 50 0.0011 18.2 3.4 25 5-29 48-72 (76)
428 cd00408 DHDPS-like Dihydrodipi 42.7 1.3E+02 0.0027 21.7 9.0 76 83-159 54-131 (281)
429 TIGR00674 dapA dihydrodipicoli 42.7 1.3E+02 0.0028 21.9 7.7 76 83-159 55-132 (285)
430 COG1036 Archaeal flavoproteins 42.6 20 0.00044 23.9 1.8 60 102-162 70-136 (187)
431 KOG2310 DNA repair exonuclease 42.4 24 0.00053 28.4 2.4 22 108-129 40-61 (646)
432 TIGR01088 aroQ 3-dehydroquinat 42.3 96 0.0021 20.2 4.8 72 79-157 24-97 (141)
433 COG0284 PyrF Orotidine-5'-phos 42.2 1E+02 0.0022 22.1 5.3 34 4-42 11-44 (240)
434 cd01981 Pchlide_reductase_B Pc 42.2 46 0.001 25.8 4.0 25 106-130 101-126 (430)
435 PRK10852 thiosulfate transport 42.1 1.5E+02 0.0032 22.4 8.2 34 96-129 57-90 (338)
436 PF00148 Oxidored_nitro: Nitro 42.0 1.6E+02 0.0034 22.5 7.2 79 5-129 272-350 (398)
437 TIGR00200 cinA_nterm competenc 41.9 1.7E+02 0.0036 22.9 7.5 51 82-133 19-71 (413)
438 PRK06806 fructose-bisphosphate 41.7 1.4E+02 0.003 21.9 8.5 76 83-158 115-207 (281)
439 PRK06027 purU formyltetrahydro 41.6 1.4E+02 0.003 21.9 10.6 69 82-160 64-146 (286)
440 PRK11106 queuosine biosynthesi 41.6 1.3E+02 0.0027 21.4 8.4 36 5-44 2-37 (231)
441 TIGR00216 ispH_lytB (E)-4-hydr 41.5 40 0.00088 24.7 3.4 46 107-159 197-242 (280)
442 PRK15408 autoinducer 2-binding 41.5 1.4E+02 0.0031 22.3 6.4 73 82-160 39-114 (336)
443 CHL00073 chlN photochlorophyll 41.3 55 0.0012 25.9 4.2 53 80-132 81-140 (457)
444 cd01516 FBPase_glpX Bacterial 41.3 1.5E+02 0.0032 22.1 8.7 43 85-129 166-208 (309)
445 COG1205 Distinct helicase fami 41.1 2E+02 0.0042 25.0 7.6 50 79-128 126-175 (851)
446 cd06282 PBP1_GntR_like_2 Ligan 41.1 1.2E+02 0.0026 21.0 8.5 69 82-157 15-85 (266)
447 cd00758 MoCF_BD MoCF_BD: molyb 41.0 92 0.002 19.6 5.9 46 82-127 18-65 (133)
448 TIGR01064 pyruv_kin pyruvate k 40.9 92 0.002 24.7 5.5 45 107-160 360-405 (473)
449 PRK10427 putative PTS system f 40.6 65 0.0014 20.0 3.8 46 85-131 22-68 (114)
450 cd06275 PBP1_PurR Ligand-bindi 40.4 1.3E+02 0.0027 21.0 9.0 72 82-160 15-88 (269)
451 PRK08745 ribulose-phosphate 3- 40.3 1.3E+02 0.0028 21.2 7.5 60 85-146 99-158 (223)
452 TIGR01304 IMP_DH_rel_2 IMP deh 40.2 1.7E+02 0.0037 22.5 7.6 58 94-156 130-193 (369)
453 TIGR00347 bioD dethiobiotin sy 40.1 97 0.0021 20.1 4.9 21 17-38 12-32 (166)
454 TIGR02260 benz_CoA_red_B benzo 39.9 90 0.002 24.3 5.2 52 108-159 338-389 (413)
455 PF00218 IGPS: Indole-3-glycer 39.9 1.4E+02 0.0029 21.6 5.7 71 82-158 144-214 (254)
456 PRK08392 hypothetical protein; 39.8 1.1E+02 0.0023 21.2 5.2 67 83-153 137-205 (215)
457 PF02729 OTCace_N: Aspartate/o 39.3 49 0.0011 21.4 3.2 62 84-155 53-120 (142)
458 PRK03692 putative UDP-N-acetyl 39.3 1.4E+02 0.0031 21.3 9.8 67 83-156 116-187 (243)
459 cd01536 PBP1_ABC_sugar_binding 39.2 1.3E+02 0.0028 20.8 7.2 72 82-159 15-88 (267)
460 PTZ00300 pyruvate kinase; Prov 39.1 1.1E+02 0.0025 24.1 5.6 44 108-160 336-380 (454)
461 TIGR00273 iron-sulfur cluster- 39.1 53 0.0012 25.7 3.9 55 74-128 42-96 (432)
462 cd05014 SIS_Kpsf KpsF-like pro 39.1 77 0.0017 19.5 4.1 41 4-45 47-87 (128)
463 COG0371 GldA Glycerol dehydrog 38.5 1.7E+02 0.0036 22.5 6.2 70 82-159 43-116 (360)
464 PRK07178 pyruvate carboxylase 38.5 1.5E+02 0.0032 23.4 6.3 36 4-44 2-37 (472)
465 PRK08227 autoinducer 2 aldolas 38.4 1.6E+02 0.0034 21.5 6.5 65 84-158 128-199 (264)
466 PRK08610 fructose-bisphosphate 38.4 1.6E+02 0.0035 21.7 7.0 72 90-161 11-87 (286)
467 PRK01215 competence damage-ind 38.2 1.5E+02 0.0033 21.4 7.0 45 82-127 22-69 (264)
468 COG0794 GutQ Predicted sugar p 38.2 77 0.0017 22.0 4.1 44 1-45 83-126 (202)
469 PRK07565 dihydroorotate dehydr 38.2 1.7E+02 0.0037 21.9 7.2 76 82-157 87-171 (334)
470 TIGR01430 aden_deam adenosine 38.1 1.6E+02 0.0036 21.7 9.5 42 83-124 172-213 (324)
471 TIGR01362 KDO8P_synth 3-deoxy- 38.1 1.6E+02 0.0034 21.4 7.0 44 82-130 59-102 (258)
472 PTZ00170 D-ribulose-5-phosphat 38.0 1E+02 0.0022 21.7 4.8 27 103-129 177-203 (228)
473 cd05008 SIS_GlmS_GlmD_1 SIS (S 37.9 76 0.0017 19.4 3.9 40 4-44 46-85 (126)
474 TIGR00930 2a30 K-Cl cotranspor 37.8 2.9E+02 0.0062 24.4 10.1 43 119-163 902-947 (953)
475 PRK06354 pyruvate kinase; Prov 37.8 98 0.0021 25.4 5.2 44 108-160 365-409 (590)
476 cd06327 PBP1_SBP_like_1 Peripl 37.7 1.6E+02 0.0035 21.5 7.5 48 82-129 149-199 (334)
477 TIGR02667 moaB_proteo molybden 37.7 1.2E+02 0.0026 20.1 6.7 46 82-127 21-70 (163)
478 TIGR00857 pyrC_multi dihydroor 37.7 91 0.002 24.0 5.0 28 17-44 197-224 (411)
479 cd06317 PBP1_ABC_sugar_binding 37.7 1.4E+02 0.0031 20.8 7.4 71 82-158 16-88 (275)
480 cd07388 MPP_Tt1561 Thermus the 37.3 1.5E+02 0.0032 20.9 5.5 20 109-128 20-39 (224)
481 PF13941 MutL: MutL protein 37.3 2.1E+02 0.0046 22.7 7.5 74 84-159 89-163 (457)
482 TIGR01520 FruBisAldo_II_A fruc 37.3 1.9E+02 0.0041 22.2 7.6 76 86-161 16-109 (357)
483 PF12965 DUF3854: Domain of un 37.1 1.1E+02 0.0024 19.5 4.8 39 3-41 67-111 (130)
484 PRK09860 putative alcohol dehy 37.1 92 0.002 23.8 4.9 46 84-129 47-98 (383)
485 cd01297 D-aminoacylase D-amino 37.0 1.9E+02 0.0042 22.2 8.1 38 7-44 215-253 (415)
486 PRK06036 translation initiatio 37.0 1.9E+02 0.004 22.0 8.9 64 90-158 201-266 (339)
487 COG4959 TraF Type IV secretory 36.8 36 0.00077 22.6 2.2 37 121-157 135-171 (173)
488 PRK05826 pyruvate kinase; Prov 36.8 1.2E+02 0.0027 24.0 5.5 45 107-160 359-405 (465)
489 COG1419 FlhF Flagellar GTP-bin 36.7 2.1E+02 0.0044 22.4 9.9 54 82-138 246-299 (407)
490 PLN02762 pyruvate kinase compl 36.7 1.3E+02 0.0027 24.3 5.6 44 108-160 397-441 (509)
491 cd06305 PBP1_methylthioribose_ 36.7 1.5E+02 0.0032 20.7 7.4 72 82-159 15-88 (273)
492 cd04724 Tryptophan_synthase_al 36.4 1.6E+02 0.0034 21.0 8.6 73 84-156 117-192 (242)
493 PF03740 PdxJ: Pyridoxal phosp 36.4 1.1E+02 0.0023 21.9 4.7 71 21-130 24-94 (239)
494 TIGR03282 methan_mark_13 putat 36.4 93 0.002 23.6 4.6 48 108-159 63-112 (352)
495 TIGR01753 flav_short flavodoxi 36.3 1.1E+02 0.0023 19.1 5.5 45 82-132 13-57 (140)
496 PF04007 DUF354: Protein of un 36.3 1.3E+02 0.0029 22.6 5.5 51 82-135 13-63 (335)
497 PF00107 ADH_zinc_N: Zinc-bind 36.3 52 0.0011 20.2 3.0 46 84-130 46-92 (130)
498 cd06533 Glyco_transf_WecG_TagA 36.1 1.3E+02 0.0028 20.0 9.7 69 82-156 56-129 (171)
499 PRK03620 5-dehydro-4-deoxygluc 36.1 1.8E+02 0.0038 21.5 7.2 74 84-159 65-140 (303)
500 TIGR00639 PurN phosphoribosylg 36.1 1.4E+02 0.0031 20.4 9.9 41 89-129 43-88 (190)
No 1
>PRK15456 universal stress protein UspG; Provisional
Probab=99.96 E-value=4.8e-29 Score=162.21 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=105.8
Q ss_pred CCceEEEEeCCCh--hhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 3 GTRRVGVAVDFSA--CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 3 ~~~~ILv~~d~s~--~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||++||||+|+|+ .+..++++|..+|+.. ++++++||.+...... + .. .... .+...+..++.
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~-----~---~~---~~~~---~~~~~~~~~~~ 65 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLS-----L---HR---FAAD---VRRFEEHLQHE 65 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCccccc-----c---cc---cccc---hhhHHHHHHHH
Confidence 4899999999994 7999999999999875 6999999997653110 0 00 0000 01122222223
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.++.++.+.+.+...+.+++.++..|++.++|++++++.++||||||+++++ +.++++||++++|+++++||||++|
T Consensus 66 ~~~~l~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 66 AEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred HHHHHHHHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEEEeC
Confidence 3445555555444457788999999999999999999999999999999976 7788999999999999999999986
No 2
>PRK15005 universal stress protein F; Provisional
Probab=99.96 E-value=2.7e-28 Score=158.99 Aligned_cols=142 Identities=20% Similarity=0.300 Sum_probs=105.2
Q ss_pred CCceEEEEeCCChh--hHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 3 GTRRVGVAVDFSAC--SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 3 ~~~~ILv~~d~s~~--~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
||++||+|+|+|+. +..++++|..+|+..+++|+++||.+..+... ..+... .......+... +.
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~-------~~~~~~--~~~~~~~~~~~----~~ 67 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYA-------SLGLAY--SAELPAMDDLK----AE 67 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccc-------cccccc--cccchHHHHHH----HH
Confidence 37999999999997 57999999999999999999999998643210 000000 00000000111 12
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.++.++.+.+.+...+.+++.++..|++.+.|++++++.++||||||++ ++.+.++++||++.+|+++++||||++|
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~-~~~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 68 AKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCC-CCCchheeecchHHHHHHhCCCCEEEeC
Confidence 2334444444444457778888999999999999999999999999988 4568889999999999999999999986
No 3
>PRK09982 universal stress protein UspD; Provisional
Probab=99.96 E-value=3.4e-28 Score=158.13 Aligned_cols=141 Identities=15% Similarity=0.079 Sum_probs=103.0
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++||||+|+|+.+..++++|..+|+..+++|+++||.+..+..... . .. ... +...+..++..
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~--~-------~~--~~~---~~~~~~~~~~~ 66 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPG--I-------YF--PAT---EDILQLLKNKS 66 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchh--h-------hc--cch---HHHHHHHHHHH
Confidence 4599999999999999999999999999999999999998754321000 0 00 000 01111111122
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
++.++.+.+.+. ...++.++..|++.+.|+++|++.++||||||++ ++.+.+++ | ++++++++++||||++|...
T Consensus 67 ~~~l~~~~~~~~--~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~-va~~V~~~s~~pVLvv~~~~ 141 (142)
T PRK09982 67 DNKLYKLTKNIQ--WPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P-AYRGMINKMSADLLIVPFID 141 (142)
T ss_pred HHHHHHHHHhcC--CCcceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H-HHHHHHhcCCCCEEEecCCC
Confidence 333444443332 3357778888999999999999999999999986 77777766 5 99999999999999998754
No 4
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.95 E-value=2.6e-27 Score=154.69 Aligned_cols=142 Identities=27% Similarity=0.339 Sum_probs=112.2
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+||||+|+|+.+..+++||..+|+..+++|+++||.++....... .+ .........+..++..++.+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~l 67 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSS------SG-------KLEVASAYKQEEDKEAKELL 67 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCC------cc-------chHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999998764321100 00 00011111222223445667
Q ss_pred HHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceeccc-chhHHHhhcCC--CcEEEEcCC
Q 031168 86 DIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMG-SVSNYVVNNGS--CPVTVVKQG 160 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~g-s~~~~l~~~~~--~pVlvv~~~ 160 (164)
+.+.+.+...+++++..+..| ++.++|+++|++.++|+||||+++++.+.++++| |++.+++++++ ||||+|++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~~ 146 (146)
T cd01989 68 LPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSKG 146 (146)
T ss_pred HHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeCc
Confidence 777777777899999988886 8999999999999999999999999999999887 69999999999 999999863
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.95 E-value=3e-27 Score=154.05 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=101.4
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++||||+|+|+.+..++++|..+|+..+++|+++||....... +.+.. .... ....+ +..
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~------~~~~~-------~~~~-~~~~~---~~~ 63 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDL------YTGLI-------DVNL-GDMQK---RIS 63 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhh------hhhhh-------hcch-HHHHH---HHH
Confidence 5799999999999999999999999999999999999994322110 00000 0000 00111 111
Q ss_pred chHHHHHHHHHHhcCceEE-EEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVV-MKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
++..+.+.+.....|+.+. ..+..|++.++|+++|++.++||||||+++ +.+ +. +||++++|+++++||||+||..
T Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~-~~-lgSva~~v~~~a~~pVLvv~~~ 140 (144)
T PRK15118 64 EETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFW-SK-LMSSARQLINTVHVDMLIVPLR 140 (144)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHH-HH-HHHHHHHHHhhCCCCEEEecCC
Confidence 2233445555556677753 455679999999999999999999999995 333 33 5899999999999999999975
Q ss_pred CC
Q 031168 161 IH 162 (164)
Q Consensus 161 ~~ 162 (164)
..
T Consensus 141 ~~ 142 (144)
T PRK15118 141 DE 142 (144)
T ss_pred cC
Confidence 54
No 6
>PRK10116 universal stress protein UspC; Provisional
Probab=99.94 E-value=3e-26 Score=149.01 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=104.8
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++|||++|+++.+..++++|..||+.++++|+++|+.+...... .. .. ...+...+ ...
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~-------~~-------~~-~~~~~~~~---~~~ 62 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN-------QF-------AA-PMLEDLRS---VMQ 62 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch-------hh-------hH-HHHHHHHH---HHH
Confidence 57999999999999999999999999999999999999986542110 00 00 00001111 111
Q ss_pred chHHHHHHHHHHhcCceE-EEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVV-VMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
++..+.+.+.....|++. ...+..|++.+.|++++++.++||||+|+++++.+.+++ |++++++++++||||+||..
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s~a~~v~~~~~~pVLvv~~~ 140 (142)
T PRK10116 63 EETQSFLDKLIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--CSAKRVIASSEVDVLLVPLT 140 (142)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--HHHHHHHhcCCCCEEEEeCC
Confidence 223344445455567764 355678999999999999999999999999988777653 79999999999999999975
Q ss_pred C
Q 031168 161 I 161 (164)
Q Consensus 161 ~ 161 (164)
+
T Consensus 141 ~ 141 (142)
T PRK10116 141 G 141 (142)
T ss_pred C
Confidence 4
No 7
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.93 E-value=6e-26 Score=146.20 Aligned_cols=140 Identities=26% Similarity=0.348 Sum_probs=104.3
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
|+++||||+|+++.+..++++|..+|+..+++|+++||.+........ ................
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 64 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFS----------------AAEDEESEEEAEEEEQ 64 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHH----------------HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccc----------------cccccccccccchhhh
Confidence 489999999999999999999999999999999999999977532110 0000000000000000
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.............+......+..|++.++|++++++.++|+||||+++++.+.++++||++++|+++++||||+||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 65 ARQAEAEEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred hhhHHHHHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 0000001223334666777788899999999999999999999999999999999999999999999999999997
No 8
>PRK11175 universal stress protein UspE; Provisional
Probab=99.93 E-value=2.6e-25 Score=161.38 Aligned_cols=146 Identities=18% Similarity=0.135 Sum_probs=110.7
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+|++||||+|+|+.+..++++|+.+|+..+++++++|+.+....... + . ..........+...+..
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~--------~--~---~~~~~~~~~~~~~~~~~ 67 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMT--------T--L---LSPDEREAMRQGVISQR 67 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhh--------c--c---cchhHHHHHHHHHHHHH
Confidence 569999999999999999999999999999999999998764321100 0 0 00000001111111112
Q ss_pred chHHHHHHHHHHhcCceEEEEEe-eCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIF-WGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
++.++.+.+.+...|++++..+. .|++.++|++.+++.++||||+|+++.+.+.+.++||++++|+++++||||++|..
T Consensus 68 ~~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 68 TAWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred HHHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence 34445555555567888888776 48999999999999999999999999999999999999999999999999999874
No 9
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.93 E-value=1.3e-24 Score=139.43 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=109.3
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+||||+|+++.+..++++|..+|+..+++|+++|+.+...... .. ..... .+..++.+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~---------------~~---~~~~~----~~~~~~~~ 58 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSS---------------PS---QLEVN----VQRARKLL 58 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCC---------------cc---hhHHH----HHHHHHHH
Confidence 6999999999999999999999999999999999998653210 00 00011 12345677
Q ss_pred HHHHHHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 86 DIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+.+.+.+.+.|++++..+.. |++.++|.+.++++++|+||||.++++.+.++++||++.+++++++|||++++
T Consensus 59 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 59 RQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred HHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 77778888889998887765 79999999999999999999999999998899999999999999999999985
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.91 E-value=7.1e-24 Score=134.80 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=102.9
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+||||+|+++.+..++++|..+|+..+++|+++||.+.... ... ...++.+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~-------------------~~~----------~~~~~~l 51 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN-------------------RLS----------EAERRRL 51 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc-------------------cCC----------HHHHHHH
Confidence 69999999999999999999999999999999999875421 000 1224566
Q ss_pred HHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC-CCcEEEEc
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG-SCPVTVVK 158 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~ 158 (164)
+.+.+.+++.++++. .+..|++.+.|.++++++++|+||||+++++.+.++++||++++|++++ +||||+++
T Consensus 52 ~~~~~~~~~~~~~~~-~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 52 AEALRLAEELGAEVV-TLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred HHHHHHHHHcCCEEE-EEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEeC
Confidence 677777776676543 2345689999999999999999999999999999999999999999999 99999985
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.89 E-value=1.4e-22 Score=147.08 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=106.6
Q ss_pred CCceEEEEeCCChhh-------HHHHHHHHhhcccC-CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhh
Q 031168 3 GTRRVGVAVDFSACS-------KKALQWAADNVVRN-GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMK 74 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~-------~~~l~~a~~la~~~-~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (164)
.+++||+|+|+++.+ ..++++|..+|+.. +++++++|+.+...... . .+. ..... ....
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~-----~--~~~-----~~~~~-~~~~ 217 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINI-----A--IEL-----PEFDP-SVYN 217 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhc-----c--ccc-----cccch-hhHH
Confidence 368999999998753 57999999999998 99999999987543210 0 000 00000 0111
Q ss_pred hhcCCCCchHHHHHHHHHHhcCceE-EEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCc
Q 031168 75 KYGAKPDPETLDIVNTVARQKQIVV-VMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCP 153 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~p 153 (164)
+. ..++..+.+.++.+..+++. ..++..|++.++|.+++++.++||||||+++++.+.++++||++++|+++++||
T Consensus 218 ~~---~~~~~~~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~p 294 (305)
T PRK11175 218 DA---IRGQHLLAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCD 294 (305)
T ss_pred HH---HHHHHHHHHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCC
Confidence 11 11223445555555567754 456778999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 031168 154 VTVVKQGIH 162 (164)
Q Consensus 154 Vlvv~~~~~ 162 (164)
||++|+.+-
T Consensus 295 VLvv~~~~~ 303 (305)
T PRK11175 295 LLAIKPDGY 303 (305)
T ss_pred EEEEcCCCC
Confidence 999987653
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.87 E-value=3.2e-21 Score=122.73 Aligned_cols=130 Identities=33% Similarity=0.477 Sum_probs=107.6
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+||||+|+++.+..++++|..+|+..+++|+++|+.+...... . ...+......++.+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~----------------~------~~~~~~~~~~~~~l 58 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA----------------A------ELAELLEEEARALL 58 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc----------------h------hHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999987653210 0 00111112235566
Q ss_pred HHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
+.+...+...+++++..+..|++.++|.+++++.++|+||+|.++++.+.++++|+++++++++++||||++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 59 EALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 666666666799999988899889999999999999999999999999889999999999999999999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.86 E-value=2e-20 Score=122.65 Aligned_cols=148 Identities=27% Similarity=0.322 Sum_probs=116.5
Q ss_pred CCCceEEEEeC-CChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 2 DGTRRVGVAVD-FSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 2 ~~~~~ILv~~d-~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
.++++|++++| +++.+..+++.+..++...++.+.++++.+...........+ .... ...........
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~ 71 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVAL----------ADAP-IPLSEEELEEE 71 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEeccccccccccccc----------ccch-hhhhHHHHHHH
Confidence 56899999999 999999999999999999999999999887664321110000 0000 00111111234
Q ss_pred CchHHHHHHHHHHhcCce-EEEEEeeCCh-hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 81 DPETLDIVNTVARQKQIV-VVMKIFWGDP-REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~-~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.++..+.+.+.....++. +...+..|++ .+.|.+.+.+.++|+||||+++++.+.++++||++++++++++|||+++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 72 AEELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEc
Confidence 466778888888888888 5888999988 79999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 152 ~~ 153 (154)
T COG0589 152 SE 153 (154)
T ss_pred cC
Confidence 75
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.78 E-value=5.6e-18 Score=124.01 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=81.4
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccC--CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRN--GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~--~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
||+|+|||||+|+|+.+..++++|+++|+.. +++|+++||.+...... . .. ...
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~-----------------~-~~--~~~---- 57 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP-----------------E-GQ--DEL---- 57 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc-----------------c-hh--HHH----
Confidence 7899999999999999999999999999884 69999999998543210 0 00 111
Q ss_pred CCCchHHHHHHHHHHh------cCceEEEEEee--------CChhHHHHHHhhhcCCcEEEEeec
Q 031168 79 KPDPETLDIVNTVARQ------KQIVVVMKIFW--------GDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
...++.++.+.+.+++ .|++++..+.. |+++++|+++|+++++||||||..
T Consensus 58 ~~~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~ 122 (357)
T PRK12652 58 AAAEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE 122 (357)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 1123455555555544 58998888865 899999999999999999999986
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.54 E-value=1.6e-13 Score=112.09 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=97.6
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+||||+++++.+..++++|.++|...+++++++||..+.... ... +..+..
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~-------------------~~~---------~~~~~l 302 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR-------------------LPE---------KKRRAI 302 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc-------------------CCH---------HHHHHH
Confidence 5799999999999999999999999999999999998654211 000 011223
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCC-CcEEEEcCC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGS-CPVTVVKQG 160 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~~~ 160 (164)
.+.+ +.+++.|.++.. +..++++++|+++|++++++.||||.+++++| ++.||+++++++.++ ..|.+|+..
T Consensus 303 ~~~~-~lA~~lGa~~~~-~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~~~~idi~iv~~~ 375 (895)
T PRK10490 303 LSAL-RLAQELGAETAT-LSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARLGPDLDLVIVALD 375 (895)
T ss_pred HHHH-HHHHHcCCEEEE-EeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHhCCCCCEEEEeCC
Confidence 3344 577778888442 33449999999999999999999999988766 556899999999885 999999744
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.47 E-value=8.6e-13 Score=103.48 Aligned_cols=127 Identities=19% Similarity=0.180 Sum_probs=107.7
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+||||++.++.+...+++|.++|.+.+++++++||..+...... +...+.
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~-----------------------------~~~~~~ 299 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLS-----------------------------EKEARR 299 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccccc-----------------------------HHHHHH
Confidence 589999999999999999999999999999999999987643210 123556
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC-CCcEEEEcCCC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG-SCPVTVVKQGI 161 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~~~ 161 (164)
+....+.+++.|-++.+ +..++++++|.++|+.+++.-||+|.+.++.|..++.|+.++++++.. ...|.+++...
T Consensus 300 l~~~~~Lae~lGae~~~-l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~~~ 376 (890)
T COG2205 300 LHENLRLAEELGAEIVT-LYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVALDA 376 (890)
T ss_pred HHHHHHHHHHhCCeEEE-EeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeCCC
Confidence 77777788887877654 333699999999999999999999999999999999999999999987 59999998654
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.70 E-value=9.9e-08 Score=56.45 Aligned_cols=84 Identities=15% Similarity=0.114 Sum_probs=70.3
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHH
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLD 86 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
|+++++++..+..++.++.+++ ..+..++++|+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH---------------------------------------------
Confidence 6899999999999999999987 446677777654
Q ss_pred HHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceeccc-chhHHHhhcCCCcEEE
Q 031168 87 IVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMG-SVSNYVVNNGSCPVTV 156 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~g-s~~~~l~~~~~~pVlv 156 (164)
...+.+.+.+++.++|+|++|.+........+.| +++..+...++|||+.
T Consensus 35 --------------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 --------------------AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred --------------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 4566777888889999999999988877777777 8999999999999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=98.28 E-value=6.7e-05 Score=61.73 Aligned_cols=144 Identities=10% Similarity=0.116 Sum_probs=91.5
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhccc--CCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCcc-chhhhhhcCCCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVR--NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSE-PTIMKKYGAKPD 81 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~--~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (164)
-|||+|+...++....+..+...... ..-.++++|+.+...-.... . -..+... ............
T Consensus 459 lriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~---l--------~~h~~~~~~~~~~~~~~~~~ 527 (832)
T PLN03159 459 LRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAM---L--------IVHNTRKSGRPALNRTQAQS 527 (832)
T ss_pred eeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccc---e--------eeeecccccccccccccccc
Confidence 38999999888888888776664333 33489999998855321100 0 0000000 000000011234
Q ss_pred chHHHHHHHHHHhc-CceEEEEEe---eCChhHHHHHHhhhcCCcEEEEeecCCCccce------ecccchhHHHhhcCC
Q 031168 82 PETLDIVNTVARQK-QIVVVMKIF---WGDPREKICEAIDKIPLSCLVIGNRGLGKLKR------AIMGSVSNYVVNNGS 151 (164)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~---~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~------~~~gs~~~~l~~~~~ 151 (164)
++....++.+.+.. ++.++.... ..+..+.|...|.+..+++|+++.+++..... ..++.+-+++++++|
T Consensus 528 ~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~Ap 607 (832)
T PLN03159 528 DHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAP 607 (832)
T ss_pred cHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCC
Confidence 67777777776543 566654432 24889999999999999999999986533222 245678899999999
Q ss_pred CcEEEEcC
Q 031168 152 CPVTVVKQ 159 (164)
Q Consensus 152 ~pVlvv~~ 159 (164)
|+|-+.=+
T Consensus 608 CsVgIlVD 615 (832)
T PLN03159 608 CSVGILVD 615 (832)
T ss_pred CCEEEEEe
Confidence 99976633
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.74 E-value=0.00069 Score=45.94 Aligned_cols=93 Identities=16% Similarity=0.020 Sum_probs=69.0
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|+|++++..+|..++..+..++...+.++.++|+...... ...+..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~---------------------------------~~~~~~ 47 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP---------------------------------ESDEEA 47 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh---------------------------------hHHHHH
Confidence 68999999999999999888887777778999998754310 113356
Q ss_pred HHHHHHHHhcCceEEEEEeeC---------Chh--------HHHHHHhhhcCCcEEEEeecCC
Q 031168 86 DIVNTVARQKQIVVVMKIFWG---------DPR--------EKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g---------~~~--------~~I~~~a~~~~~dliVig~~~~ 131 (164)
+.+...++..|+++....... +.. ..+.+.|++++++.|+.|.+..
T Consensus 48 ~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 48 EFVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred HHHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH
Confidence 777888888888765543321 122 5677889999999999998844
No 20
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=97.68 E-value=0.0016 Score=44.04 Aligned_cols=93 Identities=20% Similarity=0.117 Sum_probs=64.9
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
||+|++++..+|...+.....+....+.++.++||...-. .......
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~---------------------------------~~s~~~~ 47 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR---------------------------------EESDEEA 47 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS---------------------------------CCHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC---------------------------------cccchhH
Confidence 7999999999999999999999988888999999997543 1224456
Q ss_pred HHHHHHHHhcCceEEEEEee-----C-Ch--------hHHHHHHhhhcCCcEEEEeecCC
Q 031168 86 DIVNTVARQKQIVVVMKIFW-----G-DP--------REKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-----g-~~--------~~~I~~~a~~~~~dliVig~~~~ 131 (164)
+.+.+.|+..|+++...... + +. ...+.+.|.+++++.|++|.+..
T Consensus 48 ~~v~~~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 48 EFVEEICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp HHHHHHHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred HHHHHHHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 78889999999987666443 1 11 13566789999999999998843
No 21
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=97.46 E-value=0.0031 Score=42.51 Aligned_cols=93 Identities=16% Similarity=0.059 Sum_probs=68.7
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|+|++++..+|..++..+..+....+.++.++|+...... ...+..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~---------------------------------~~~~~~ 47 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRP---------------------------------ESDEEA 47 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCc---------------------------------hHHHHH
Confidence 68999999999999999998887766778999999754311 113567
Q ss_pred HHHHHHHHhcCceEEEEE-ee--CC-h----------hHHHHHHhhhcCCcEEEEeecCC
Q 031168 86 DIVNTVARQKQIVVVMKI-FW--GD-P----------REKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~--g~-~----------~~~I~~~a~~~~~dliVig~~~~ 131 (164)
+.+.+.+...|+++.... .. +. . ...+.+.|++++++.|+.|.+..
T Consensus 48 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~d 107 (185)
T cd01992 48 AFVADLCAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHAD 107 (185)
T ss_pred HHHHHHHHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcH
Confidence 777888888888776541 11 11 1 14577889999999999998743
No 22
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.45 E-value=0.0059 Score=50.64 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=36.6
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
..+|.+.+-+.++...|+.||.++|++.+.++++++.....
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~ 670 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGE 670 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEccc
Confidence 34899999888999999999999999999999999998653
No 23
>PRK12342 hypothetical protein; Provisional
Probab=97.02 E-value=0.0062 Score=43.33 Aligned_cols=104 Identities=18% Similarity=0.124 Sum_probs=62.9
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHH
Q 031168 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
-.++...+|++.|++|. ..+++|+++++-++.. .....++..-..
T Consensus 32 ~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a----------------------------------~~~~l~r~alam 76 (254)
T PRK12342 32 KISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL----------------------------------QNSKVRKDVLSR 76 (254)
T ss_pred cCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH----------------------------------hHHHHHHHHHHc
Confidence 35678899999999998 6788999998887541 001121222222
Q ss_pred HHhcCceEEEEEeeC-Ch---hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcE
Q 031168 92 ARQKQIVVVMKIFWG-DP---REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPV 154 (164)
Q Consensus 92 ~~~~~~~~~~~~~~g-~~---~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pV 154 (164)
-.+.++-+.-....| |+ +..|...++..++|||+.|......-. |.+.-.+......|.
T Consensus 77 GaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~t----gqvg~~lA~~Lg~P~ 139 (254)
T PRK12342 77 GPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYA----QQVGLLLGELLQLPV 139 (254)
T ss_pred CCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCC----CCHHHHHHHHhCCCc
Confidence 222233333222334 55 678888888888999999976433222 444445555555553
No 24
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=96.96 E-value=0.0097 Score=42.42 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=63.5
Q ss_pred CChhhHHHHHHHHhhcccCC-CEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHH
Q 031168 13 FSACSKKALQWAADNVVRNG-DHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (164)
Q Consensus 13 ~s~~~~~~l~~a~~la~~~~-~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
.++...+|++.|++|..+.+ ++|+++.+-+... .....++..-..
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a----------------------------------~~~~~lr~aLAm 79 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL----------------------------------TNAKGRKDVLSR 79 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch----------------------------------hhHHHHHHHHHc
Confidence 56788999999999998865 7999999887541 011223333222
Q ss_pred HHhcCceEEEEEeeC-C---hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcE
Q 031168 92 ARQKQIVVVMKIFWG-D---PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPV 154 (164)
Q Consensus 92 ~~~~~~~~~~~~~~g-~---~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pV 154 (164)
-.+.++-+......| | .+..|...++..++|||+.|......-. |.+.-.+......|.
T Consensus 80 GaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~t----gqvg~~lAe~Lg~P~ 142 (256)
T PRK03359 80 GPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYA----QQVGLLVGEILNIPA 142 (256)
T ss_pred CCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCC----CcHHHHHHHHhCCCc
Confidence 223333333332233 3 3677888888889999999986433222 344444555555553
No 25
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=96.93 E-value=0.03 Score=37.61 Aligned_cols=92 Identities=22% Similarity=0.118 Sum_probs=63.8
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccC--CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRN--GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~--~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+|+|++++..+|..++..+.++.... +.+++++|+...... ....
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~---------------------------------~~~~ 47 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPG---------------------------------YRDE 47 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCC---------------------------------CcHH
Confidence 68999999999998888888876655 668899998864321 1133
Q ss_pred HHHHHHHHHHhcCceEEEEEee-------------C-C--------hhHHHHHHhhhcCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW-------------G-D--------PREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-------------g-~--------~~~~I~~~a~~~~~dliVig~~~ 130 (164)
..+.++..+...|+++...... + . ....+.+.|++++++.|+.|.+.
T Consensus 48 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~ 116 (185)
T cd01993 48 SLEVVERLAEELGIELEIVSFKEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNL 116 (185)
T ss_pred HHHHHHHHHHHcCCceEEEehhhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCCh
Confidence 4556667777777765543221 0 0 12456678999999999999874
No 26
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.03 Score=40.73 Aligned_cols=95 Identities=14% Similarity=0.046 Sum_probs=66.4
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.+|+|++++..+|..++.....+... ..+.++||...-.. .....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~---------------------------------~~~~~ 66 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG---------------------------------YSDQE 66 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC---------------------------------ccchH
Confidence 69999999999999888888877766 88999999876531 12456
Q ss_pred HHHHHHHHHhcCceEEEEEee---C-C------h--------hHHHHHHhhhcCCcEEEEeecCCCcc
Q 031168 85 LDIVNTVARQKQIVVVMKIFW---G-D------P--------REKICEAIDKIPLSCLVIGNRGLGKL 134 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~---g-~------~--------~~~I~~~a~~~~~dliVig~~~~~~~ 134 (164)
.+.....+...++.....-.. + . + ...+.+.|.+.++|.|+.|.+.....
T Consensus 67 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~ 134 (298)
T COG0037 67 AELVEKLCEKLGIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA 134 (298)
T ss_pred HHHHHHHHHHhCCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH
Confidence 666777777767632222111 1 1 1 23466789999999999998864433
No 27
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=96.79 E-value=0.024 Score=37.52 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=61.5
Q ss_pred eEEEEeCCC-----hhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 6 RVGVAVDFS-----ACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 6 ~ILv~~d~s-----~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
+|||-.+.. +.+..++..|.+|+...+.+++++.+-+.
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~------------------------------------- 43 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPA------------------------------------- 43 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETC-------------------------------------
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecc-------------------------------------
Confidence 466666543 67889999999999999999999987731
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeC--------ChhHHHHHHhhhcCCcEEEEeecC
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWG--------DPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
....+.+++.+...|.+--+.+... ...+.|.+.+++.++|+|++|...
T Consensus 44 -~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 44 -EEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp -CCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred -hhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 2255666666666788644444321 145678889999999999999763
No 28
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.58 E-value=0.049 Score=37.32 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=71.4
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHH
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLD 86 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
++|+-.+......+...|.++..+ +.++-++...... ....+
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R-------------------------------------~ga~e 46 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYR-------------------------------------IGAVE 46 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSS-------------------------------------THHHH
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCC-------------------------------------ccHHH
Confidence 456666777778889999998877 7788888764332 45788
Q ss_pred HHHHHHHhcCceEEEEEeeCChhHH---HHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEE
Q 031168 87 IVNTVARQKQIVVVMKIFWGDPREK---ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVV 157 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~---I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv 157 (164)
+++.+++..|+++...-...++.+. .++..+..++|+|++...+++......+....+ ++.. .+..+++|
T Consensus 47 QL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~-~~~~~~~~~~~LV 120 (196)
T PF00448_consen 47 QLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKK-LLEALNPDEVHLV 120 (196)
T ss_dssp HHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHH-HHHHHSSSEEEEE
T ss_pred HHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHH-HhhhcCCccceEE
Confidence 8899898888886542222345443 445556677999999999988766544433333 3332 35545544
No 29
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=96.58 E-value=0.074 Score=38.04 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=61.8
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccC--CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRN--GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~--~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
-.+|+|++++..+|...+..+..+.... +-+|.++|+...... ..
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~---------------------------------~~ 75 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPG---------------------------------FP 75 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCC---------------------------------CC
Confidence 3589999999999998888777776543 347888887653210 00
Q ss_pred chHHHHHHHHHHhcCceEEEEEee-----------CC---------hhHHHHHHhhhcCCcEEEEeecCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW-----------GD---------PREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-----------g~---------~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
. +.+++.|++.|+++...-.. +. -...+.+.|++.++|.|++|.+..
T Consensus 76 ~---~~~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d 142 (258)
T PRK10696 76 E---HVLPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRD 142 (258)
T ss_pred H---HHHHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH
Confidence 1 13467788888876543221 11 013466789999999999998853
No 30
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=96.27 E-value=0.043 Score=39.18 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=65.8
Q ss_pred eCCChhhHHHHHHHHhhcc-cCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHH
Q 031168 11 VDFSACSKKALQWAADNVV-RNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVN 89 (164)
Q Consensus 11 ~d~s~~~~~~l~~a~~la~-~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (164)
...++....|++.|++|.. ..+.+++++++-++.. ++.+..
T Consensus 33 ~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a------------------------------------~~~lr~-- 74 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA------------------------------------EEALRE-- 74 (260)
T ss_pred cccChhhHHHHHHHHHhhccCCCceEEEEEecchhh------------------------------------HHHHHH--
Confidence 3456778999999999999 5899999999886541 333333
Q ss_pred HHHHhcCceEEEEEe----eC----ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 90 TVARQKQIVVVMKIF----WG----DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~----~g----~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
+-..|++--.++. .+ ..+..|...++..+.|||++|...-..- .|.+...+......|.+
T Consensus 75 --aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~----t~qvg~~lAe~Lg~P~~ 142 (260)
T COG2086 75 --ALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGD----TGQVGPLLAELLGWPQV 142 (260)
T ss_pred --HHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCC----ccchHHHHHHHhCCcee
Confidence 3344554333322 23 3477888899999999999997643221 24444455555555543
No 31
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=95.74 E-value=0.21 Score=36.64 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=64.9
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+.++++++++..+|..++..+.......+.++.++|+.....+ .
T Consensus 26 ~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~F-----------------------------------p 70 (301)
T PRK05253 26 EFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKF-----------------------------------P 70 (301)
T ss_pred hCCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCC-----------------------------------H
Confidence 36789999999999998888887765444557889999865432 2
Q ss_pred hHHHHHHHHHHhcCceEEEEEe-----eC------C--------hhHHHHHHhhhcCCcEEEEeecCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIF-----WG------D--------PREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-----~g------~--------~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
+..+-..+.++..|+++..... .| + -...+.+.++++++|.++.|.+..
T Consensus 71 Et~ef~d~~a~~~gl~l~v~~~~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrD 138 (301)
T PRK05253 71 EMIEFRDRRAKELGLELIVHSNPEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRD 138 (301)
T ss_pred HHHHHHHHHHHHhCCCEEEEeChHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 3444455566677877655421 12 0 124577788889999999999853
No 32
>PRK13820 argininosuccinate synthase; Provisional
Probab=95.65 E-value=0.4 Score=36.55 Aligned_cols=90 Identities=19% Similarity=0.049 Sum_probs=59.0
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCC-EEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGD-HLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~-~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
++++|+|++++.-+|..++.++.+ ..+. +|+++|+.....
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e---~~g~~~Viav~vd~g~~------------------------------------ 41 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKE---KYGYDEVITVTVDVGQP------------------------------------ 41 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHH---hcCCCEEEEEEEECCCC------------------------------------
Confidence 358999999999988877777543 3464 899999875321
Q ss_pred chHHHHHHHHHHhcCceEEEEEee-----------------------------CChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW-----------------------------GDPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------g~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
.+-.+.+++.+.+.|+++...-.. --....+.+.|++.+++.|..|..++
T Consensus 42 ~~e~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 42 EEEIKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred hHHHHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 112333555555556544332110 01245688889999999999999654
No 33
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.15 Score=33.20 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC-Ch---hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG-DP---REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g-~~---~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
..+...+.+.+.|++++..+... .. ..+..+.+++.+++.||-|..+...+..+ +...++.||+-||-
T Consensus 17 ~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGm--------vAa~T~lPViGVPv 88 (162)
T COG0041 17 TMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGM--------VAAKTPLPVIGVPV 88 (162)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchh--------hhhcCCCCeEeccC
Confidence 56667777888899999999886 22 34455566778888899998876655533 56678999999986
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 89 ~ 89 (162)
T COG0041 89 Q 89 (162)
T ss_pred c
Confidence 5
No 34
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=95.48 E-value=0.68 Score=35.86 Aligned_cols=68 Identities=18% Similarity=0.050 Sum_probs=50.0
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhc-ccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNV-VRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la-~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
..++|+|++++..+|...+.....+. ...+.+++++||...-. ...
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr---------------------------------~~s 60 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS---------------------------------PNA 60 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC---------------------------------cch
Confidence 34789999999999998877777665 23467999999986442 122
Q ss_pred chHHHHHHHHHHhcCceEEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKI 103 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ 103 (164)
++..+.+++.|++.|+++...-
T Consensus 61 ~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 61 DSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE
Confidence 4456778888999998866543
No 35
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=95.25 E-value=0.93 Score=34.20 Aligned_cols=91 Identities=18% Similarity=0.053 Sum_probs=59.2
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.-++|+|++++.-+|..++..+.+ .+.+++.+|+...... ...
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~~~~~~---------------------------------~~~ 46 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFRFYEFN---------------------------------GST 46 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEecCCCC---------------------------------CCh
Confidence 346999999999988765555443 4678899888642210 012
Q ss_pred hHHHHHHHHHHhcCceEEEEEee-----------------C---Ch---------hHHHHHHhhhcCCcEEEEeecC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW-----------------G---DP---------REKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-----------------g---~~---------~~~I~~~a~~~~~dliVig~~~ 130 (164)
+..+.+++.|+..|+++...-.. | ++ ...+.+.|++.++|.|+.|.+.
T Consensus 47 ~d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya 123 (360)
T PRK14665 47 EYLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYV 123 (360)
T ss_pred HHHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 34566677777778765543221 2 11 1346688999999999999774
No 36
>PRK10867 signal recognition particle protein; Provisional
Probab=95.24 E-value=0.44 Score=36.80 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=59.4
Q ss_pred EEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHH
Q 031168 8 GVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDI 87 (164)
Q Consensus 8 Lv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (164)
+++..++.....+...|..++...+..+.++...... -...++
T Consensus 105 ~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R-------------------------------------~aa~eQ 147 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR-------------------------------------PAAIEQ 147 (433)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc-------------------------------------hHHHHH
Confidence 3445566667778888888876656677777655432 224456
Q ss_pred HHHHHHhcCceEEEEEeeCChh---HHHHHHhhhcCCcEEEEeecCCCcccee
Q 031168 88 VNTVARQKQIVVVMKIFWGDPR---EKICEAIDKIPLSCLVIGNRGLGKLKRA 137 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~---~~I~~~a~~~~~dliVig~~~~~~~~~~ 137 (164)
++.++...|+++.......++. ...++.++..++|+|++.+.++......
T Consensus 148 L~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~ 200 (433)
T PRK10867 148 LKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEE 200 (433)
T ss_pred HHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHH
Confidence 6667777787765432223443 3444566777899999999887655443
No 37
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=95.03 E-value=0.56 Score=33.45 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=58.4
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.+++++|++++.-+|..++..+... +.++..+|+..+.. ..
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~~~-----------------------------------~~ 51 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSPSI-----------------------------------SP 51 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCCCC-----------------------------------CH
Confidence 4678999999999998777766554 56788888864321 02
Q ss_pred hHHHHHHHHHHhcCceEEEEEee------------------CChhHHHHHHhhhcCCcEEEEeecC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW------------------GDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~------------------g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
+-.+.+++.++..|++....-.. ......+.+.|++.+++.|+.|.+.
T Consensus 52 ~e~~~a~~~a~~lgi~~~ii~~~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~ 117 (252)
T TIGR00268 52 RELEDAIIIAKEIGVNHEFVKIDKMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNA 117 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcHHHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 23445566666667765443211 0123356678899999999999763
No 38
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=95.02 E-value=0.25 Score=32.44 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC----ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG----DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
...++....+++.|++++..+..- +...++.+.+++.+++.+|.+....+. ...-+...+..||+-||
T Consensus 12 ~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~--------Lpgvva~~t~~PVIgvP 83 (156)
T TIGR01162 12 PTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAH--------LPGMVAALTPLPVIGVP 83 (156)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccch--------hHHHHHhccCCCEEEec
Confidence 366777788888999999988775 234555566666778888888775443 33446678899999998
Q ss_pred CCC
Q 031168 159 QGI 161 (164)
Q Consensus 159 ~~~ 161 (164)
...
T Consensus 84 ~~~ 86 (156)
T TIGR01162 84 VPS 86 (156)
T ss_pred CCc
Confidence 643
No 39
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.90 E-value=0.18 Score=39.20 Aligned_cols=91 Identities=16% Similarity=0.016 Sum_probs=64.2
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHH
Q 031168 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
|..-....+|..|+..|...+.+|.++++.++..... ......-..+.+..+++.
T Consensus 32 DLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~-------------------------~~~r~~Fl~esL~~L~~~ 86 (454)
T TIGR00591 32 DQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLAA-------------------------TRRHYFFMLGGLDEVANE 86 (454)
T ss_pred chhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCcccc-------------------------cHHHHHHHHHHHHHHHHH
Confidence 3334456788888887766667899999997653210 001112345677777777
Q ss_pred HHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 92 ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 92 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+++.|+.. .+..|++.+.|.+.+++++++.|+....
T Consensus 87 L~~~g~~L--~v~~g~~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 87 CERLIIPF--HLLDGPPKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHcCCce--EEeecChHHHHHHHHHHcCCCEEEEecc
Confidence 77766665 4678999999999999999999999774
No 40
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=94.63 E-value=0.51 Score=31.73 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=18.7
Q ss_pred hHHHHHHhhhcCCcEEEEeecCC
Q 031168 109 REKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~~ 131 (164)
.+.|.+.+++.++|+|++|....
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCccc
Confidence 56778888888899999998755
No 41
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.97 Score=30.88 Aligned_cols=82 Identities=13% Similarity=0.031 Sum_probs=57.3
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
+||.|-++++.....++--|+. ....++++.++....+.
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~---------------------------------------- 39 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKAD---------------------------------------- 39 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCC----------------------------------------
Confidence 4788999999888888888877 44557777776554433
Q ss_pred HHHHHHHHHhcCceEEEEEeeCC-----hhHHHHHHhhhcCCcEEEEee
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGD-----PREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~-----~~~~I~~~a~~~~~dliVig~ 128 (164)
....+++++.|++....-..+. -..+|.+..++.++|+||+..
T Consensus 40 -A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAG 87 (200)
T COG0299 40 -AYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAG 87 (200)
T ss_pred -CHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 1233446677888655443332 467899999999999999954
No 42
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.21 E-value=1.2 Score=34.52 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=58.0
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHH
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLD 86 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
++++..++..+..+...|..+..+.+..+.++......+ ...+
T Consensus 103 ~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~-------------------------------------~a~~ 145 (428)
T TIGR00959 103 LMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP-------------------------------------AAIE 145 (428)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch-------------------------------------HHHH
Confidence 344455666677788888887655666777776554321 1445
Q ss_pred HHHHHHHhcCceEEEEEeeCChh---HHHHHHhhhcCCcEEEEeecCCCccce
Q 031168 87 IVNTVARQKQIVVVMKIFWGDPR---EKICEAIDKIPLSCLVIGNRGLGKLKR 136 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~---~~I~~~a~~~~~dliVig~~~~~~~~~ 136 (164)
++..++...++++.......+|. ...++.+...++|+|++...++.....
T Consensus 146 QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~ 198 (428)
T TIGR00959 146 QLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDE 198 (428)
T ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCH
Confidence 66666666777755432222443 334556667789999999988765443
No 43
>PLN00200 argininosuccinate synthase; Provisional
Probab=94.19 E-value=2 Score=33.02 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=29.0
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
+++|+|++++.-++.-++.++.+ ..+.+|+.+++...
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~G 41 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVG 41 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECC
Confidence 57999999999988877777754 23678999998754
No 44
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=94.16 E-value=1.3 Score=32.47 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=62.1
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
+.++++++++..+|..++..+.......+.++.++|+...-.+ .+
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F-----------------------------------~E 63 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKF-----------------------------------RE 63 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCC-----------------------------------HH
Confidence 5667888999999988888887776544567999999875532 23
Q ss_pred HHHHHHHHHHhcCceEEEEEee-----C-Ch-------------hHHHHHHhhhcCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW-----G-DP-------------REKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-----g-~~-------------~~~I~~~a~~~~~dliVig~~~ 130 (164)
..+-..+.++..|+++.+.... | ++ ...+.+.+++++.|.++.|.+.
T Consensus 64 t~efrd~~a~~~gl~l~v~~~~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RR 129 (294)
T TIGR02039 64 MIAFRDHMVAKYGLRLIVHSNEEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARR 129 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEechhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCCh
Confidence 4444455556667765553221 1 01 1346677888999999999874
No 45
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=94.05 E-value=0.39 Score=31.43 Aligned_cols=72 Identities=10% Similarity=0.019 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhh---hcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAID---KIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~---~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
....++....+++.|+.++..+... ...+.+.++++ ..+++.+|.+....+. ...-+...+..||+-|
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~--------Lpgvva~~t~~PVIgv 84 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAA--------LPGVVASLTTLPVIGV 84 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS----------HHHHHHHHSSS-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCccc--------chhhheeccCCCEEEe
Confidence 4467888888888999999888775 33444555444 4467877777765433 3444667789999999
Q ss_pred cCCC
Q 031168 158 KQGI 161 (164)
Q Consensus 158 ~~~~ 161 (164)
|...
T Consensus 85 P~~~ 88 (150)
T PF00731_consen 85 PVSS 88 (150)
T ss_dssp EE-S
T ss_pred ecCc
Confidence 8654
No 46
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=93.93 E-value=1.1 Score=29.25 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=58.0
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|+|++++..+|..++..+.+..... .++.++|+.....+ .+..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg~~~-----------------------------------~~~~ 44 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTGYEF-----------------------------------PETY 44 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCCCCC-----------------------------------HHHH
Confidence 58899999999988888777765432 46778887654321 2344
Q ss_pred HHHHHHHHhcCceEEEEEeeCCh--------------------------hHHHHHHhhhcCCcEEEEeecCCCc
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDP--------------------------REKICEAIDKIPLSCLVIGNRGLGK 133 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~--------------------------~~~I~~~a~~~~~dliVig~~~~~~ 133 (164)
+.++..++..|+++......... ...+.+.+++.+.+.+++|.+....
T Consensus 45 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~ 118 (173)
T cd01713 45 EFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDES 118 (173)
T ss_pred HHHHHHHHHhCCCeEEECCCccHHHHHHHhhhccCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccc
Confidence 55555666666665443221110 2345566777788999999985443
No 47
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=93.89 E-value=0.63 Score=35.60 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=30.0
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
|+..++|++++.++-.+..+.++...|- +.+.+|.++-
T Consensus 3 ~l~~k~IllgvTGsiaa~k~~~lv~~L~-~~g~~V~vv~ 40 (399)
T PRK05579 3 MLAGKRIVLGVSGGIAAYKALELVRRLR-KAGADVRVVM 40 (399)
T ss_pred CCCCCeEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEE
Confidence 4567899999999998888888888885 4577776653
No 48
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=93.61 E-value=0.56 Score=31.79 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=28.2
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
+|||++++.++..+..+.++...|.+ .+.+|.++-
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~-~g~~V~vv~ 35 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTK-RGYQVTVLM 35 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 48999999999999988888888864 466766553
No 49
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.26 E-value=1.8 Score=33.46 Aligned_cols=94 Identities=17% Similarity=0.115 Sum_probs=57.0
Q ss_pred EEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHH
Q 031168 8 GVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDI 87 (164)
Q Consensus 8 Lv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (164)
+++..++..+..+...|..+. ..+..+.++...... ....++
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R-------------------------------------~aA~eQ 146 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFR-------------------------------------AGAFDQ 146 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccc-------------------------------------hhHHHH
Confidence 444556666667777777665 345567766543221 235566
Q ss_pred HHHHHHhcCceEEEEEeeCChhH---HHHHHhhhcCCcEEEEeecCCCccceecc
Q 031168 88 VNTVARQKQIVVVMKIFWGDPRE---KICEAIDKIPLSCLVIGNRGLGKLKRAIM 139 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~---~I~~~a~~~~~dliVig~~~~~~~~~~~~ 139 (164)
++.+++..++++.......++.. .-++.++..++|+|++.+.++......++
T Consensus 147 Lk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm 201 (429)
T TIGR01425 147 LKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLF 201 (429)
T ss_pred HHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHH
Confidence 67777777777654333335533 34455666679999999998776554444
No 50
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=93.24 E-value=2.2 Score=30.49 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=61.5
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
...+++|++++.-+|..++..|...+ |..+.++.+..+... +
T Consensus 16 ~~~kv~vAfSGGvDSslLa~la~~~l---G~~v~AvTv~sP~~p-----------------------------------~ 57 (269)
T COG1606 16 EKKKVVVAFSGGVDSSLLAKLAKEAL---GDNVVAVTVDSPYIP-----------------------------------R 57 (269)
T ss_pred hcCeEEEEecCCccHHHHHHHHHHHh---ccceEEEEEecCCCC-----------------------------------h
Confidence 45699999999988876655555544 357777777764321 4
Q ss_pred hHHHHHHHHHHhcCceEEEEEee------------------CChhHHHHHHhhhcCCcEEEEeecC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW------------------GDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~------------------g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
+.++.....+.+.|++.++.-.. ..+.+.|.+.|.+.++|.|+=|.+.
T Consensus 58 ~e~e~A~~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 58 REIEEAKNIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred hhhhHHHHHHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcH
Confidence 45556666666677765544211 1345789999999999999998873
No 51
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=93.24 E-value=1.1 Score=27.01 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=47.3
Q ss_pred CCchHHHHHHHHHHhcCceEEEEEee-----------C-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHh
Q 031168 80 PDPETLDIVNTVARQKQIVVVMKIFW-----------G-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVV 147 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~ 147 (164)
..++.++.+...+...|+.+...+.. | .-.++|.+.++..++|+||+... .+ ++-...+-
T Consensus 5 ~~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~-Ls-------p~Q~rNLe 76 (95)
T PF13167_consen 5 DFEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNE-LS-------PSQQRNLE 76 (95)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCC-CC-------HHHHHHHH
Confidence 34678889999999888875433221 4 56799999999999999999754 33 23334455
Q ss_pred hcCCCcEE
Q 031168 148 NNGSCPVT 155 (164)
Q Consensus 148 ~~~~~pVl 155 (164)
....|+|+
T Consensus 77 ~~~~~~V~ 84 (95)
T PF13167_consen 77 KALGVKVI 84 (95)
T ss_pred HHHCCeee
Confidence 55566664
No 52
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=93.23 E-value=1.8 Score=29.54 Aligned_cols=86 Identities=21% Similarity=0.145 Sum_probs=56.2
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHH
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLD 86 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
|+|++++..+|..++..+.... +.++.++|+..... ..+-.+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~g~~-----------------------------------~~~~~~ 42 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATSPLF-----------------------------------PRRELE 42 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCCCCC-----------------------------------CHHHHH
Confidence 5789999988887776665543 22788888865321 133456
Q ss_pred HHHHHHHhcCceEEEEEee--------C-----------ChhHHHHHHhhhcCCcEEEEeecC
Q 031168 87 IVNTVARQKQIVVVMKIFW--------G-----------DPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~--------g-----------~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
.++..++..|++....-.. + -....+.+.|++.+++.|+.|.+.
T Consensus 43 ~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~ 105 (202)
T cd01990 43 EAKRLAKEIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNA 105 (202)
T ss_pred HHHHHHHHcCCcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 6667777777765443221 0 112356678999999999999874
No 53
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=92.63 E-value=0.23 Score=32.86 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=63.5
Q ss_pred hHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhcC
Q 031168 17 SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQ 96 (164)
Q Consensus 17 ~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
...+|..| ...+.+|..++|.++..... ..... . ...-..+.+..+++.+++.|
T Consensus 13 DN~aL~~A----~~~~~~v~~vfv~d~~~~~~----------------~~~~~---~---r~~Fl~~sL~~L~~~L~~~g 66 (165)
T PF00875_consen 13 DNPALHAA----AQNGDPVLPVFVFDPEEFHP----------------YRIGP---R---RRRFLLESLADLQESLRKLG 66 (165)
T ss_dssp T-HHHHHH----HHTTSEEEEEEEE-HHGGTT----------------CSSCH---H---HHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHH----HHcCCCeEEEEEeccccccc----------------ccCcc---h---HHHHHHHHHHHHHHHHHhcC
Confidence 44566655 44567899999998762110 00000 0 00223556677777777667
Q ss_pred ceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 97 IVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 97 ~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+. ..+..|++.+.|.+.+++.+++.|+.... .+......- .-..+.+....+++..+.
T Consensus 67 ~~--L~v~~g~~~~~l~~l~~~~~~~~V~~~~~-~~~~~~~rd-~~v~~~l~~~~i~~~~~~ 124 (165)
T PF00875_consen 67 IP--LLVLRGDPEEVLPELAKEYGATAVYFNEE-YTPYERRRD-ERVRKALKKHGIKVHTFD 124 (165)
T ss_dssp S---EEEEESSHHHHHHHHHHHHTESEEEEE----SHHHHHHH-HHHHHHHHHTTSEEEEE-
T ss_pred cc--eEEEecchHHHHHHHHHhcCcCeeEeccc-cCHHHHHHH-HHHHHHHHhcceEEEEEC
Confidence 55 56888999999999999999999998765 333332221 222334444566665554
No 54
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=92.58 E-value=2.4 Score=31.37 Aligned_cols=43 Identities=12% Similarity=-0.027 Sum_probs=34.0
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGL 46 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~ 46 (164)
+.++.+++++..+|..++..+...+...+.++-++||.....+
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~F 79 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKF 79 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCC
Confidence 5678899999999998888888876555567899998765543
No 55
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=92.51 E-value=3.4 Score=31.65 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=26.9
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
+|++++++.-++..++.++.+. +.+|+++|+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 5899999998888777776543 678999999753
No 56
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=92.45 E-value=2.4 Score=29.07 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=62.8
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
|+++++++..+|..++-.+.+ .+-++..+++..+..... .. ....-.
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~~~~~~~-----------------~~------------~h~~~~ 47 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLTPEEGSS-----------------MM------------YHTVNH 47 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEecCCCCc-----------------cc------------ccccCH
Confidence 578999999999877777666 355777777665332110 00 001134
Q ss_pred HHHHHHHHhcCceEEEEEeeC---Ch----hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 86 DIVNTVARQKQIVVVMKIFWG---DP----REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g---~~----~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
+.++..++..|++.......+ +. .+.|.+.+++ +++.||-|..... ..+..+.++.+++--.+-.|+|
T Consensus 48 e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd-~~~~~~e~~~~~~gl~~~~PLW 122 (194)
T cd01994 48 ELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEE-GVDAVVFGAILSE-YQRTRVERVCERLGLEPLAPLW 122 (194)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHc-CCCEEEECccccH-HHHHHHHHHHHHcCCEEEeccc
Confidence 556667777788865543222 22 2334444444 6899999987432 2222333344433333345554
No 57
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=4 Score=31.44 Aligned_cols=110 Identities=18% Similarity=0.109 Sum_probs=69.9
Q ss_pred EEEEeCCCh-hhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 7 VGVAVDFSA-CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 7 ILv~~d~s~-~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
||+.-|+.- .+.-.++.+..+|... .++||.- ++..
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsG---------------------------------------EES~ 132 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSG---------------------------------------EESL 132 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeC---------------------------------------CcCH
Confidence 344444332 3677889999998665 6777765 4456
Q ss_pred HHHHHHHHhcCceEEEE-EeeCChhHHHHHHhhhcCCcEEEEeecCC--CccceecccchhH------H---HhhcCCCc
Q 031168 86 DIVNTVARQKQIVVVMK-IFWGDPREKICEAIDKIPLSCLVIGNRGL--GKLKRAIMGSVSN------Y---VVNNGSCP 153 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-~~~g~~~~~I~~~a~~~~~dliVig~~~~--~~~~~~~~gs~~~------~---l~~~~~~p 153 (164)
++++-++...|++.... +..-.-.+.|.+...+.++|++|+.+=.. +.--...-||+++ . +.+....+
T Consensus 133 ~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~ 212 (456)
T COG1066 133 QQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIA 212 (456)
T ss_pred HHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCe
Confidence 67777777777754433 33447789999999999999999987531 1111222355443 3 34455688
Q ss_pred EEEEcC
Q 031168 154 VTVVKQ 159 (164)
Q Consensus 154 Vlvv~~ 159 (164)
+++|-+
T Consensus 213 ~fiVGH 218 (456)
T COG1066 213 IFIVGH 218 (456)
T ss_pred EEEEEE
Confidence 887743
No 58
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.13 E-value=2.2 Score=32.84 Aligned_cols=59 Identities=7% Similarity=0.024 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccch
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSV 142 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~ 142 (164)
..++++.++...|+++.......+..+.|.......++|+|++...|++......+...
T Consensus 284 AvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL 342 (436)
T PRK11889 284 TVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEM 342 (436)
T ss_pred HHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHH
Confidence 55667777777787765432222344444444444468999999988876544444444
No 59
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=91.56 E-value=2.8 Score=27.73 Aligned_cols=86 Identities=10% Similarity=0.040 Sum_probs=50.3
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
|++|.+++..+|..++..+... +.++.++|+...... ..-.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~~~~-----------------------------------~~~~ 41 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYGQRH-----------------------------------AKEE 41 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECCCCC-----------------------------------hhHH
Confidence 5889999999888777666542 446888888643210 0011
Q ss_pred HHHHHHHHhcCceEEEEEeeCC-hhHHHHHHhhhcCCcEEEEeecCC
Q 031168 86 DIVNTVARQKQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
+.++..++..|..... -.... ....+.+.|++.+++.|++|.+..
T Consensus 42 ~~~~~~~~~~g~~~~~-~~~~~~~~~~l~~~a~~~g~~~i~~G~~~~ 87 (169)
T cd01995 42 EAAKLIAEKLGPSTYV-PARNLIFLSIAAAYAEALGAEAIIIGVNAE 87 (169)
T ss_pred HHHHHHHHHHCCCEEE-eCcCHHHHHHHHHHHHHCCCCEEEEeeccC
Confidence 3333334444421111 11111 234566778999999999998853
No 60
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.45 E-value=3.4 Score=30.79 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=63.9
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHH
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLD 86 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
.+|++++.......-..|.++- ..+-.|.+.-..... ....+
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~DTFR-------------------------------------AaAiE 184 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAGDTFR-------------------------------------AAAIE 184 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHH-HCCCeEEEEecchHH-------------------------------------HHHHH
Confidence 4566788776666666665555 455566555333221 45778
Q ss_pred HHHHHHHhcCceEEEEEeeC-ChhHHHH---HHhhhcCCcEEEEeecCCCccceecc
Q 031168 87 IVNTVARQKQIVVVMKIFWG-DPREKIC---EAIDKIPLSCLVIGNRGLGKLKRAIM 139 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g-~~~~~I~---~~a~~~~~dliVig~~~~~~~~~~~~ 139 (164)
++..+.++.|+++-..- .| ||+..+. +.|+..++|+|++.+-||-.....++
T Consensus 185 QL~~w~er~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM 240 (340)
T COG0552 185 QLEVWGERLGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLM 240 (340)
T ss_pred HHHHHHHHhCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHH
Confidence 88888888899877654 55 7776554 56888999999999887766555554
No 61
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=90.95 E-value=1.7 Score=29.38 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=26.5
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
|||++++.++..+..+.+....|.+ .+.+|+++-
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~-~g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTK-LGYDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 6899999999988888877777754 467766553
No 62
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=90.78 E-value=0.67 Score=31.55 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=26.1
Q ss_pred ceEEEEeCCChhhHHHH-HHHHhhcccCCCEEEEEE
Q 031168 5 RRVGVAVDFSACSKKAL-QWAADNVVRNGDHLILVT 39 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l-~~a~~la~~~~~~l~~l~ 39 (164)
+||++++.++..+..+. +....|. ..+++|+++-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~-~~g~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLV-DEGAEVTPIV 35 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHH-hCcCEEEEEE
Confidence 68999999999988886 6666664 5577777654
No 63
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=90.66 E-value=2.8 Score=32.95 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=29.4
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
.-++|++++.++-.+..+.++...|.+ .+.+|+++-
T Consensus 69 ~~k~IllgVtGsIAayka~~lvr~L~k-~G~~V~Vvm 104 (475)
T PRK13982 69 ASKRVTLIIGGGIAAYKALDLIRRLKE-RGAHVRCVL 104 (475)
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHHh-CcCEEEEEE
Confidence 358999999999999999999998864 577766664
No 64
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=90.54 E-value=2.5 Score=25.45 Aligned_cols=34 Identities=26% Similarity=-0.061 Sum_probs=25.5
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
|+|++++..+|..++..+.++. .++.++|+....
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~~~~ 34 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----YQVIAVTVDHGI 34 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----CCEEEEEEcCCC
Confidence 5889999999987777776653 268888887644
No 65
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.32 E-value=7.1 Score=30.29 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=66.7
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHH
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLD 86 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
.+|.+-++.....+-..|.++-+ .+-++-++.+.-.. -.+.+
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~R-------------------------------------pAA~e 145 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYR-------------------------------------PAAIE 145 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCC-------------------------------------hHHHH
Confidence 35667788777778888888887 66666666544322 22677
Q ss_pred HHHHHHHhcCceEEEEEeeCCh---hHHHHHHhhhcCCcEEEEeecCCCccceecc
Q 031168 87 IVNTVARQKQIVVVMKIFWGDP---REKICEAIDKIPLSCLVIGNRGLGKLKRAIM 139 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~---~~~I~~~a~~~~~dliVig~~~~~~~~~~~~ 139 (164)
+++....+-++++-.....-+| +..=++.+++..+|+|++.+.++-....-++
T Consensus 146 QL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm 201 (451)
T COG0541 146 QLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELM 201 (451)
T ss_pred HHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHH
Confidence 8888888888887665222245 4566778999999999999988876665554
No 66
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.73 E-value=6 Score=28.59 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=64.9
Q ss_pred hhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhc
Q 031168 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (164)
Q Consensus 16 ~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
+.+.++++|..+.. .+.++...+...+.... ..|.+. .++-++.+++.+++.
T Consensus 39 ~~~~~~~~A~~lk~-~g~~~~r~~~~kpRTs~----~s~~G~-----------------------g~~gl~~l~~~~~~~ 90 (266)
T PRK13398 39 SEEQMVKVAEKLKE-LGVHMLRGGAFKPRTSP----YSFQGL-----------------------GEEGLKILKEVGDKY 90 (266)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEeeecCCCCC----CccCCc-----------------------HHHHHHHHHHHHHHc
Confidence 45678888888876 56677777777644321 122222 256788888999999
Q ss_pred CceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 96 QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
|+.+-+.+..-.-.+.+.+ . +|++-||++.-.... ..+.+ ....+||++=+.
T Consensus 91 Gl~~~te~~d~~~~~~l~~----~-vd~~kIga~~~~n~~------LL~~~-a~~gkPV~lk~G 142 (266)
T PRK13398 91 NLPVVTEVMDTRDVEEVAD----Y-ADMLQIGSRNMQNFE------LLKEV-GKTKKPILLKRG 142 (266)
T ss_pred CCCEEEeeCChhhHHHHHH----h-CCEEEECcccccCHH------HHHHH-hcCCCcEEEeCC
Confidence 9998887776555555543 3 588888887543311 12222 355677776543
No 67
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=89.71 E-value=7.1 Score=29.37 Aligned_cols=98 Identities=17% Similarity=0.054 Sum_probs=58.6
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
++|+|++++.-+|..++..+.+ .+.++..+|+........ + .. ......+-
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~~~~~~~-----~-----------~~---------~~~~s~~d 51 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKLWDDDDE-----T-----------GK---------GGCCAEED 51 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeCCCcccc-----c-----------cc---------CCcCcHHH
Confidence 4899999999988766544433 456788888875321000 0 00 00011334
Q ss_pred HHHHHHHHHhcCceEEEEEee-----------------C----------C-h-hHHHHHHhhhcCCcEEEEeecCC
Q 031168 85 LDIVNTVARQKQIVVVMKIFW-----------------G----------D-P-REKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-----------------g----------~-~-~~~I~~~a~~~~~dliVig~~~~ 131 (164)
.+.+++.++..|+++...-.. | . . ...+.+.|++.++|.|+.|.+..
T Consensus 52 ~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~ 127 (346)
T PRK00143 52 IADARRVADKLGIPHYVVDFEKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYAR 127 (346)
T ss_pred HHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeecc
Confidence 455666677777765443211 1 1 1 35567889999999999999743
No 68
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=89.58 E-value=7.6 Score=29.51 Aligned_cols=36 Identities=17% Similarity=0.037 Sum_probs=27.3
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
-.++||.+++.-+|.-++-++.. .+.+++++|+...
T Consensus 172 ~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~ 207 (371)
T TIGR00342 172 QGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNE 207 (371)
T ss_pred CCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 36899999999888766655533 4779999999843
No 69
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=89.56 E-value=2.1 Score=33.05 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=59.5
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHH
Q 031168 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
|.--....+|..|+..+ .+|..++|.++...... ..+ ...... .....-..+.++.+++.
T Consensus 10 DLRl~DN~aL~~A~~~~----~~vl~vfi~dp~~~~~~------~~~----~~~~~~------~~r~~Fl~esL~~L~~~ 69 (429)
T TIGR02765 10 DLRVHDNPALYKASSSS----DTLIPLYCFDPRQFKLT------HFF----GFPKTG------PARGKFLLESLKDLRTS 69 (429)
T ss_pred CCccccHHHHHHHHhcC----CeEEEEEEECchHhccc------ccc----ccCCCC------HHHHHHHHHHHHHHHHH
Confidence 33334566787777543 36999999886532100 000 000000 01112335677777777
Q ss_pred HHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 92 ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 92 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+++.|+.. .+..|++.+.|.+.+++.+++.|+....
T Consensus 70 L~~~g~~L--~v~~G~~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 70 LRKLGSDL--LVRSGKPEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHHcCCCe--EEEeCCHHHHHHHHHHHhCCCEEEEecc
Confidence 77777665 4678999999999999999999999765
No 70
>PRK08576 hypothetical protein; Provisional
Probab=89.31 E-value=6.8 Score=30.54 Aligned_cols=86 Identities=26% Similarity=0.207 Sum_probs=53.9
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|+|++++..+|..++..+.+... .+.++++.....+ .+..
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~----~V~aV~iDTG~e~-----------------------------------pet~ 276 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVDTGYEM-----------------------------------PLTD 276 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeCCCCCC-----------------------------------hHHH
Confidence 899999999999888877666542 3777777543211 1234
Q ss_pred HHHHHHHHhcCceEEEE-E-------eeC-----------ChhHHHHHHhhhcCCcEEEEeecC
Q 031168 86 DIVNTVARQKQIVVVMK-I-------FWG-----------DPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~-~-------~~g-----------~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
+.+.+.++..|+++... + ..| .-.+.+.+.+++.+++.++.|.+.
T Consensus 277 e~~~~lae~LGI~lii~~v~~~~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~ 340 (438)
T PRK08576 277 EYVEKVAEKLGVDLIRAGVDVPMPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRD 340 (438)
T ss_pred HHHHHHHHHcCCCEEEcccCHHHHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeH
Confidence 44555555566665430 0 011 112456677888899999999763
No 71
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=88.76 E-value=8 Score=28.67 Aligned_cols=37 Identities=27% Similarity=0.073 Sum_probs=27.5
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
++++|++++.-+|..++..+... .+.+++++|+....
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd~G~ 53 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVDHGL 53 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEeCCC
Confidence 68999999998887666555442 35689999998644
No 72
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=88.73 E-value=5.1 Score=27.82 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=45.0
Q ss_pred HHHHhcCceEEEEEeeC--Ch---hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 90 TVARQKQIVVVMKIFWG--DP---REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g--~~---~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+.+...++.+.+.-... +| .....+..++.++|.||++++....-. .+-++.++..+..|.+++.+.+
T Consensus 25 ErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG----P~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 25 ERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG----PKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred hhcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC----chHHHHHHhhcCCCEEEecCCc
Confidence 33444566655432111 33 344557789999999999987544322 4678889999999999997654
No 73
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=88.41 E-value=2.5 Score=30.36 Aligned_cols=95 Identities=18% Similarity=0.163 Sum_probs=58.4
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHH
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLD 86 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (164)
++++--.+-.+..-+..++.-.+..++++.---...+...++ +|.++| ++-+.
T Consensus 47 ~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPY----sFQGlg-----------------------e~gL~ 99 (286)
T COG2876 47 RVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPY----SFQGLG-----------------------EEGLK 99 (286)
T ss_pred EEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcc----cccccC-----------------------HHHHH
Confidence 344444444555556666666667777766665655554432 222222 56788
Q ss_pred HHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCc
Q 031168 87 IVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGK 133 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~ 133 (164)
.+++...+.|+.+.+++..-.-.+.+.++ +|+|=+|.+....
T Consensus 100 ~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y-----~DilqvGARNMQN 141 (286)
T COG2876 100 LLKRAADETGLPVVTEVMDVRDVEAAAEY-----ADILQVGARNMQN 141 (286)
T ss_pred HHHHHHHHcCCeeEEEecCHHHHHHHHhh-----hhHHHhcccchhh
Confidence 88888889999999888764444444443 5777777775443
No 74
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=88.12 E-value=9.7 Score=28.90 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=24.7
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
.++|+|++++.-+|..++.... ..+.+++.+|+.
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~~ 38 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTMR 38 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEec
Confidence 4699999999988876554332 346678888884
No 75
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=88.00 E-value=8.6 Score=28.13 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=26.9
Q ss_pred HHHhcCceEEEEEee----CChhHHHHHHhhhcCCcEEEEeec
Q 031168 91 VARQKQIVVVMKIFW----GDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 91 ~~~~~~~~~~~~~~~----g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+++.|+++...-.. .+....+.+..++.++|++|+...
T Consensus 132 lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK06027 132 LVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARY 174 (286)
T ss_pred HHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecc
Confidence 367778887553211 234557888888999999999764
No 76
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=87.89 E-value=3.7 Score=33.13 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC----ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG----DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
...+.....+++.|++++..+..- +....+++.++..+++.||.+....+.+ ..-+..++.+||+-||
T Consensus 424 ~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l--------~~~~a~~t~~pvi~vp 495 (577)
T PLN02948 424 PTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHL--------PGMVASMTPLPVIGVP 495 (577)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccc--------hHHHhhccCCCEEEcC
Confidence 466777788888899988887764 2345566677777889888877654433 3446678899999998
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 496 ~~ 497 (577)
T PLN02948 496 VK 497 (577)
T ss_pred CC
Confidence 75
No 77
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=87.81 E-value=2.2 Score=33.50 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHh
Q 031168 15 ACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQ 94 (164)
Q Consensus 15 ~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
-....+|..|+. .+.+|.++++.++..... .... ..+ ..-.-+.+..+++.+++
T Consensus 13 l~DN~AL~~A~~----~~~~vl~vfi~dp~~~~~----------------~~~~---~~r---~~Fl~esL~~L~~~L~~ 66 (471)
T TIGR03556 13 LSDNIGLAAARQ----QSAKVVGLFCLDPNILQA----------------DDMA---PAR---VAYLIGCLQELQQRYQQ 66 (471)
T ss_pred cchHHHHHHHHh----cCCCEEEEEEEchhhhcc----------------ccCC---HHH---HHHHHHHHHHHHHHHHH
Confidence 345567777764 345799999988642110 0000 000 12335567777777777
Q ss_pred cCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 95 KQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 95 ~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.|+.. .+..|++.+.|.+.+++.+++.|+....
T Consensus 67 ~G~~L--~v~~G~p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 67 AGSQL--LILQGDPVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred CCCCe--EEEECCHHHHHHHHHHHcCCCEEEEecc
Confidence 77655 5678999999999999999999998765
No 78
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=87.79 E-value=6 Score=26.24 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=18.4
Q ss_pred hHHHHHHhhhcCCcEEEEeecCC
Q 031168 109 REKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~~ 131 (164)
...|.+.+++.++|+|++|....
T Consensus 72 a~al~~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 72 APALVALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHHHHHHhcCCCEEEECCCcc
Confidence 56677888888899999988754
No 79
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.64 E-value=7.5 Score=30.17 Aligned_cols=84 Identities=12% Similarity=0.034 Sum_probs=47.7
Q ss_pred CCChhhHHHHHHHHhhc-ccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHH
Q 031168 12 DFSACSKKALQWAADNV-VRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNT 90 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la-~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (164)
.+......+...|..++ ...+..+.++...+.. ....+.+..
T Consensus 230 tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r-------------------------------------~~a~eqL~~ 272 (424)
T PRK05703 230 TGVGKTTTLAKLAARYALLYGKKKVALITLDTYR-------------------------------------IGAVEQLKT 272 (424)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH-------------------------------------HHHHHHHHH
Confidence 34444556677777776 4455677777543211 123466677
Q ss_pred HHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccc
Q 031168 91 VARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLK 135 (164)
Q Consensus 91 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~ 135 (164)
+++..++++.......+....|.+. .++|+|++...+++...
T Consensus 273 ~a~~~~vp~~~~~~~~~l~~~l~~~---~~~DlVlIDt~G~~~~d 314 (424)
T PRK05703 273 YAKIMGIPVEVVYDPKELAKALEQL---RDCDVILIDTAGRSQRD 314 (424)
T ss_pred HHHHhCCceEccCCHHhHHHHHHHh---CCCCEEEEeCCCCCCCC
Confidence 7776777664422222333333332 35799999988776544
No 80
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=87.51 E-value=1.4 Score=30.03 Aligned_cols=36 Identities=11% Similarity=-0.072 Sum_probs=30.0
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
++||++++.++-.+..+.+....|.+..+.+|+++-
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~ 36 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVI 36 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 479999999999999999999999765677766663
No 81
>PRK00074 guaA GMP synthase; Reviewed
Probab=87.51 E-value=11 Score=29.98 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=27.4
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
++++|++++.-+|..++..+.... +.+++++|+...
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~l---g~~v~av~vd~g 251 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAI---GDQLTCVFVDHG 251 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHh---CCceEEEEEeCC
Confidence 689999999998876666665432 567999999754
No 82
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=87.47 E-value=5.9 Score=30.38 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=28.3
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEE
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILV 38 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l 38 (164)
.-++|++++.++..+..++++...|.+ .+.+|.++
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~~-~g~~V~vv 36 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELVR-QGAEVKVI 36 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 357999999999999999999888854 47777655
No 83
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=87.18 E-value=9.3 Score=27.68 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHH---HHHhhhcCCcEEEEeecCCCccce
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKI---CEAIDKIPLSCLVIGNRGLGKLKR 136 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I---~~~a~~~~~dliVig~~~~~~~~~ 136 (164)
..+.++.+++..++.+.......++...+ ++.+...++|+|++...++.....
T Consensus 115 a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~ 170 (272)
T TIGR00064 115 AIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKV 170 (272)
T ss_pred HHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcchH
Confidence 35666777777776543222223555433 345556779999999988765443
No 84
>PRK14974 cell division protein FtsY; Provisional
Probab=87.14 E-value=11 Score=28.34 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH---HHHHhhhcCCcEEEEeecCCCccceec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK---ICEAIDKIPLSCLVIGNRGLGKLKRAI 138 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~---I~~~a~~~~~dliVig~~~~~~~~~~~ 138 (164)
..++++.++...|+++......+++... .++.++..++|+|++...++......+
T Consensus 183 a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~l 240 (336)
T PRK14974 183 AIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANL 240 (336)
T ss_pred HHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHH
Confidence 4556677777778776543333365543 344566678899999988776544333
No 85
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=86.53 E-value=6.5 Score=27.88 Aligned_cols=49 Identities=6% Similarity=0.092 Sum_probs=35.6
Q ss_pred HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCCC
Q 031168 110 EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGIH 162 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~~ 162 (164)
+......++.++|++|+.++....-. ..-+++++.....|.+++.+.+.
T Consensus 50 ~~~~~~~~~~~pDf~i~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVISPNPAAPG----PKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCC----chHHHHHHHhcCCCEEEEcCCCc
Confidence 34455668889999999887433211 35678899999999999976553
No 86
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=86.48 E-value=7.6 Score=25.91 Aligned_cols=35 Identities=9% Similarity=-0.142 Sum_probs=27.6
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
+++|++++.-+|..++..+.+ .+.+++.+|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCCC
Confidence 589999999988877766665 36789999998654
No 87
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.06 E-value=14 Score=28.77 Aligned_cols=88 Identities=18% Similarity=0.093 Sum_probs=46.6
Q ss_pred EEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHH
Q 031168 8 GVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDI 87 (164)
Q Consensus 8 Lv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (164)
+++.-++.....+...|..+.+ .+..+.++.+.... ....++
T Consensus 100 lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R-------------------------------------~aa~eQ 141 (437)
T PRK00771 100 LVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYR-------------------------------------PAAYDQ 141 (437)
T ss_pred EECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCC-------------------------------------HHHHHH
Confidence 3344555556666777766653 45566666543321 123455
Q ss_pred HHHHHHhcCceEEEEEeeCChhH---HHHHHhhhcCCcEEEEeecCCCccc
Q 031168 88 VNTVARQKQIVVVMKIFWGDPRE---KICEAIDKIPLSCLVIGNRGLGKLK 135 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~---~I~~~a~~~~~dliVig~~~~~~~~ 135 (164)
++.++...++++.......++.. ..++.+.. .|+|++...++....
T Consensus 142 L~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~--~DvVIIDTAGr~~~d 190 (437)
T PRK00771 142 LKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKK--ADVIIVDTAGRHALE 190 (437)
T ss_pred HHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhc--CCEEEEECCCcccch
Confidence 55666666666432211224433 23333333 488888888766544
No 88
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=85.94 E-value=0.8 Score=27.80 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=20.6
Q ss_pred CChhHHHHHHhhhcCCcEEEEeec
Q 031168 106 GDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 106 g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
-.-.+.|.++++++++||+|+|..
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSH
T ss_pred CCCHHHHHHHHHHcCCCEEEECCh
Confidence 366889999999999999999975
No 89
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=85.92 E-value=2.8 Score=30.94 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=30.4
Q ss_pred EeeC-ChhHHHHHHhhhc-------CCcEEEEeecCCCccceeccc-chhHHHhhcCCCcEEEE
Q 031168 103 IFWG-DPREKICEAIDKI-------PLSCLVIGNRGLGKLKRAIMG-SVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 103 ~~~g-~~~~~I~~~a~~~-------~~dliVig~~~~~~~~~~~~g-s~~~~l~~~~~~pVlvv 157 (164)
.+.| +....|++..+.. ++|+||+++.|-+...=+.|. -..-+-+..+++||+.-
T Consensus 50 ~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvisa 113 (319)
T PF02601_consen 50 SVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISA 113 (319)
T ss_pred cccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEe
Confidence 3446 5556565543332 489999998865432222222 12223455778998754
No 90
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=85.62 E-value=5.8 Score=27.47 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhc---CCcEEEEeecC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKI---PLSCLVIGNRG 130 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~---~~dliVig~~~ 130 (164)
.+..+..++.++..|+.-...+..|+..+.|-+...+. .+|+|++...+
T Consensus 80 ~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 80 PERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK 131 (205)
T ss_dssp HHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc
Confidence 34566677777778886566678899988888877654 59999998864
No 91
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=85.44 E-value=5.9 Score=24.48 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
+..+...++..|.++... -..-+.+.+++.+.+.++|+|++....
T Consensus 16 ~~~~~~~l~~~G~~V~~l-g~~~~~~~l~~~~~~~~pdvV~iS~~~ 60 (119)
T cd02067 16 KNIVARALRDAGFEVIDL-GVDVPPEEIVEAAKEEDADAIGLSGLL 60 (119)
T ss_pred HHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 456777788889887321 123678899999999999999998763
No 92
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=85.30 E-value=3.2 Score=26.68 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=39.2
Q ss_pred CChhHHHHHHhhhcCCcEEEEeecCCC----ccceecccchhHHHhhcC-CCcEEEEcCC
Q 031168 106 GDPREKICEAIDKIPLSCLVIGNRGLG----KLKRAIMGSVSNYVVNNG-SCPVTVVKQG 160 (164)
Q Consensus 106 g~~~~~I~~~a~~~~~dliVig~~~~~----~~~~~~~gs~~~~l~~~~-~~pVlvv~~~ 160 (164)
+...+.|.+.+++++++.||+|-+... .......-..++.+.... ++||.++..+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr 96 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDER 96 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 377999999999999999999997322 111122345566677776 8999988653
No 93
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=85.16 E-value=4.6 Score=33.81 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=34.0
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCC
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGG 45 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~ 45 (164)
+|.+.+-+.++...++.++.+++.+....+++++......
T Consensus 616 ~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~ 655 (769)
T KOG1650|consen 616 KVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDES 655 (769)
T ss_pred EEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccch
Confidence 6667777777788899999999999999999999888654
No 94
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=85.02 E-value=2 Score=27.67 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=35.7
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCc-cc---eecccchhHHHhhcCCCcEEEEcCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGK-LK---RAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~-~~---~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
....|.+.+++++++.||+|-+.... .. .......++.|-...++||..+..+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr 98 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDER 98 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 47888899999999999999763311 11 1222355666666668898887643
No 95
>PRK00919 GMP synthase subunit B; Validated
Probab=84.88 E-value=14 Score=27.43 Aligned_cols=37 Identities=24% Similarity=0.041 Sum_probs=28.7
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
++++|++++.-+|..++..+.. ..+.+++++|+....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~---~lG~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHR---AIGDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHH---HhCCeEEEEEEECCC
Confidence 6899999999988877665554 246789999998654
No 96
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=84.82 E-value=13 Score=27.13 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=50.4
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
.++||.|.++++..+..++-.+..- ...+++|.++ +...+
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~-g~l~~~i~~v--isn~~------------------------------------- 122 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYS-GELDAEIALV--ISNHE------------------------------------- 122 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHc-CCCCcEEEEE--EEcCh-------------------------------------
Confidence 3568999999988877776665433 2334555444 33221
Q ss_pred hHHHHHHHHHHhcCceEEEEEee-C---ChhHHHHHHhhhcCCcEEEEeec
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW-G---DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+...+++.|+++...-.. . .....+.+..+++++|++|+...
T Consensus 123 ----~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagy 169 (280)
T TIGR00655 123 ----DLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKY 169 (280)
T ss_pred ----hHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCc
Confidence 0112366778876543321 1 22456788888889999999754
No 97
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=84.54 E-value=7.9 Score=27.36 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=38.1
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
.....|.+.+.+.+.|.|.+|.+.- ...--.-.+..++-.+...||++.|...
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~g--vt~~~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDG--VTEENVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCccc--ccHHHHHHHHHHHHhhcCCCEEEecCCh
Confidence 5677899999999999999997632 1211123455666668899999998764
No 98
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=84.22 E-value=14 Score=27.84 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=67.0
Q ss_pred ceEEEEeCCC--hhhHHHHHHHHhhcccC---CCEE-EEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcC
Q 031168 5 RRVGVAVDFS--ACSKKALQWAADNVVRN---GDHL-ILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (164)
Q Consensus 5 ~~ILv~~d~s--~~~~~~l~~a~~la~~~---~~~l-~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
++++|-+.+. ++-..+++||.+|.... ...+ .++-+.-..+ .+...|.++.-+........
T Consensus 47 ~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKP---RTt~GWKGli~DP~ld~sf~---------- 113 (344)
T TIGR00034 47 DRLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKP---RTTVGWKGLINDPDLNGSFR---------- 113 (344)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccC---CCccccccccCCCCcCCCCC----------
Confidence 4555555433 23567899998886543 2233 3443433221 11256766654433222221
Q ss_pred CCCchHHHHHHHHH---HhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 79 KPDPETLDIVNTVA---RQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 79 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
.++=+..+++.. .+.|+++-+++..-...+.+.+. ++..-||++.-.. .+-.++.....|||.
T Consensus 114 --i~~GL~~~R~ll~~i~~~GlPvatE~ld~~~~~y~~Dl-----isw~aIGARt~es-------q~hRelaSgl~~PVg 179 (344)
T TIGR00034 114 --INHGLRIARKLLLDLVNLGLPIAGEFLDMISPQYLADL-----FSWGAIGARTTES-------QVHRELASGLSCPVG 179 (344)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCeEEEecCcCcHHHHHHH-----HhhccccCccccC-------HHHHHHHhCCCCceE
Confidence 133344444443 77899999888876555444322 2334777764221 122567777889987
Q ss_pred EEc
Q 031168 156 VVK 158 (164)
Q Consensus 156 vv~ 158 (164)
+=+
T Consensus 180 fKn 182 (344)
T TIGR00034 180 FKN 182 (344)
T ss_pred ecC
Confidence 643
No 99
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=84.01 E-value=6.2 Score=27.17 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=48.2
Q ss_pred CChhhHHHHHHHHhhcccCCC-EEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHH
Q 031168 13 FSACSKKALQWAADNVVRNGD-HLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (164)
Q Consensus 13 ~s~~~~~~l~~a~~la~~~~~-~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
.++.++-+++-|.++-.+.-+ +++.+.+-+.. .++.++.....
T Consensus 38 mNPF~eIAvEEAvrlKEk~l~eeviavs~G~aq------------------------------------s~~ilRt~LA~ 81 (254)
T KOG3180|consen 38 MNPFCEIAVEEAVRLKEKKLAEEVIAVSIGPAQ------------------------------------SQEILRTALAK 81 (254)
T ss_pred cCchHHHHHHHHHhHhhhhhhheEEEEecCccc------------------------------------hHHHHHHHHhc
Confidence 456788888888888665333 56666554432 13333333322
Q ss_pred HHhcCceEEEE---EeeC-ChhHHHHHHhhhcCCcEEEEeec
Q 031168 92 ARQKQIVVVMK---IFWG-DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 92 ~~~~~~~~~~~---~~~g-~~~~~I~~~a~~~~~dliVig~~ 129 (164)
-...++.++.. .+.- .++..+...+...+.||+++|..
T Consensus 82 Gadr~~hv~~~~~~~lepl~vAKiLk~~vekek~~lVllGKQ 123 (254)
T KOG3180|consen 82 GADRGVHVEVVGAEELEPLHVAKILKKLVEKEKSDLVLLGKQ 123 (254)
T ss_pred cCCceeEEecCchhhccchHHHHHHHHHHHhhcCCEEEEccc
Confidence 22334444422 1112 56777888899999999999975
No 100
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=83.89 E-value=12 Score=26.18 Aligned_cols=91 Identities=16% Similarity=0.112 Sum_probs=53.1
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
++++-+++..+|. +|+..|-+.|-+|..+-...+....+.. . + --..
T Consensus 2 k~~aL~SGGKDS~----~Al~~a~~~G~eV~~Ll~~~p~~~dS~m-----~----------------------H--~~n~ 48 (223)
T COG2102 2 KVIALYSGGKDSF----YALYLALEEGHEVVYLLTVKPENGDSYM-----F----------------------H--TPNL 48 (223)
T ss_pred cEEEEEecCcHHH----HHHHHHHHcCCeeEEEEEEecCCCCeee-----e----------------------e--ccch
Confidence 4566777777775 4555555566665555544444321100 0 0 1122
Q ss_pred HHHHHHHHhcCceEEEEEeeC---ChhHHHHHHhhhcCCcEEEEeec
Q 031168 86 DIVNTVARQKQIVVVMKIFWG---DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+.+...++..|+++......| .-.+.+.+..+..++|-||.|.-
T Consensus 49 ~~~~~~Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI 95 (223)
T COG2102 49 ELAELQAEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAI 95 (223)
T ss_pred HHHHHHHHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchh
Confidence 333344455678766655555 46777888888888999999875
No 101
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.42 E-value=16 Score=27.15 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHH---HHHHhhhcCCcEEEEeecCCCcccee
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREK---ICEAIDKIPLSCLVIGNRGLGKLKRA 137 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~---I~~~a~~~~~dliVig~~~~~~~~~~ 137 (164)
..+++..+....++.+.......++... .+..+...++|+|++.+.++......
T Consensus 157 a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~ 213 (318)
T PRK10416 157 AIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTN 213 (318)
T ss_pred hHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHH
Confidence 3445555666667765544322355433 23455667899999999988765544
No 102
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.40 E-value=18 Score=27.89 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR 136 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~ 136 (164)
..++++.++...++++.......+..+.|.......++|+|++...+++....
T Consensus 249 AveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~ 301 (407)
T PRK12726 249 AVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAE 301 (407)
T ss_pred HHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCH
Confidence 45667777777777655321111223333333333468999999988876443
No 103
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=83.18 E-value=12 Score=26.76 Aligned_cols=94 Identities=6% Similarity=-0.004 Sum_probs=54.5
Q ss_pred hHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhcC
Q 031168 17 SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQ 96 (164)
Q Consensus 17 ~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
...++++.++++...+++|.++- ..+. ......+.+.+.+++.|
T Consensus 13 ~~~i~~~~~~lag~~~~rI~~ip---tAS~---------------------------------~~~~~~~~~~~~~~~lG 56 (250)
T TIGR02069 13 DREILREFVSRAGGEDAIIVIIT---SASE---------------------------------EPREVGERYITIFSRLG 56 (250)
T ss_pred hHHHHHHHHHHhCCCCceEEEEe---CCCC---------------------------------ChHHHHHHHHHHHHHcC
Confidence 45588999999988887776552 2110 11334566777777788
Q ss_pred ce-EEEEEeeC---ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh
Q 031168 97 IV-VVMKIFWG---DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN 148 (164)
Q Consensus 97 ~~-~~~~~~~g---~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~ 148 (164)
++ ++...... ...+++.+...+ +|.|+++......+.+.+-++-...+++
T Consensus 57 ~~~v~~l~i~~r~~a~~~~~~~~l~~--ad~I~~~GGnq~~l~~~l~~t~l~~~l~ 110 (250)
T TIGR02069 57 VKEVKILDVREREDASDENAIALLSN--ATGIFFTGGDQLRITSLLGDTPLLDRLR 110 (250)
T ss_pred CceeEEEecCChHHccCHHHHHHHhh--CCEEEEeCCCHHHHHHHHcCCcHHHHHH
Confidence 84 45443321 122345555544 7899987765555555554555545443
No 104
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=83.14 E-value=12 Score=27.54 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=53.2
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEeeCC-hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
...++.++.+.+.+++.+.++..+..... -+..+++.+...+.|.||.+.. -+.+ +.++.-+...-.-|+-++
T Consensus 16 ~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GG-DGTv-----~evingl~~~~~~~Lgil 89 (301)
T COG1597 16 GKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGG-DGTV-----NEVANGLAGTDDPPLGIL 89 (301)
T ss_pred cchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecC-cchH-----HHHHHHHhcCCCCceEEe
Confidence 34577888999999999999888887764 7788888877778999999755 3322 344554444433337677
Q ss_pred cCC
Q 031168 158 KQG 160 (164)
Q Consensus 158 ~~~ 160 (164)
|-.
T Consensus 90 P~G 92 (301)
T COG1597 90 PGG 92 (301)
T ss_pred cCC
Confidence 753
No 105
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=83.10 E-value=3.7 Score=24.58 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
...++++.+++.|++++..... . .++.+... ++|+|+++..-+... ...++.+...++||.++++.
T Consensus 19 l~~k~~~~~~~~gi~~~v~a~~--~-~~~~~~~~--~~Dvill~pqi~~~~------~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAAGS--Y-GAAGEKLD--DADVVLLAPQVAYML------PDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEEec--H-HHHHhhcC--CCCEEEECchHHHHH------HHHHHHhhhcCCCEEEeChh
Confidence 5678888888899987654332 2 22333333 479999986633221 23345667778999999764
No 106
>PRK00509 argininosuccinate synthase; Provisional
Probab=83.03 E-value=19 Score=27.74 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=28.7
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
+++|+|++++.-++.-++.++.+- .+.+|+.+++...
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d~G 38 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTADVG 38 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEecC
Confidence 579999999998887777766542 3678999998754
No 107
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=82.76 E-value=22 Score=28.89 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=55.3
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
-++|+|.-|.+-+.-.+-.......+..++.-+..++-....-.+ .....
T Consensus 69 ~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGY------------------------------Gl~~~ 118 (575)
T PRK11070 69 GTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGY------------------------------GLSPE 118 (575)
T ss_pred CCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCC------------------------------CCCHH
Confidence 368888888776655444444555556665322223322211111 11133
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
..+.+. +.|.+.-.-+-.|....+-+++|++.++|+||+.+|..
T Consensus 119 ~i~~~~----~~~~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~ 162 (575)
T PRK11070 119 VVDQAH----ARGAQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHLP 162 (575)
T ss_pred HHHHHH----hcCCCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCCC
Confidence 333333 24666555566788888888999999999999998843
No 108
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=82.35 E-value=16 Score=26.39 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=33.3
Q ss_pred HHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC---CccceecccchhHHHh-hcCCCcEEEEcC
Q 031168 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL---GKLKRAIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~---~~~~~~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
+...+.+.|++++.... +.. ....+. ++|.|++|...- +.+-.. .|+..-.++ ++..+||+++-+
T Consensus 150 ~a~~L~~~gi~v~~i~d--~~~---~~~m~~-~vd~VliGad~v~~nG~v~nk-~Gt~~~a~~Ak~~~vPv~v~~~ 218 (282)
T PF01008_consen 150 MAKELAEAGIPVTLIPD--SAV---GYVMPR-DVDKVLIGADAVLANGGVVNK-VGTLQLALAAKEFNVPVYVLAE 218 (282)
T ss_dssp HHHHHHHTT-EEEEE-G--GGH---HHHHHC-TESEEEEE-SEEETTS-EEEE-TTHHHHHHHHHHTT-EEEEE--
T ss_pred HHHHhhhcceeEEEEec--hHH---HHHHHH-hCCeeEEeeeEEecCCCEeeh-hhHHHHHHHHHhhCCCEEEEcc
Confidence 33445567888776332 222 223333 589999999742 222222 355555544 567899999843
No 109
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=82.35 E-value=4.8 Score=24.38 Aligned_cols=66 Identities=5% Similarity=-0.056 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
-..+++++.+++.|++++..... ..++..... ++|+|++|..-+-.+ +-..+.+.....||.+++.
T Consensus 15 ~la~km~~~a~~~gi~~~i~a~~---~~e~~~~~~--~~Dvill~PQv~~~~------~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 15 LLANALNKGAKERGVPLEAAAGA---YGSHYDMIP--DYDLVILAPQMASYY------DELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHHHHHHHHHHCCCcEEEEEee---HHHHHHhcc--CCCEEEEcChHHHHH------HHHHHHhhhcCCCEEEeCH
Confidence 36688889999999987754332 233444444 479999987633221 2345566666889988874
No 110
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.99 E-value=8.8 Score=30.32 Aligned_cols=118 Identities=12% Similarity=0.016 Sum_probs=69.0
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
=.+|++++=..+......|.+|.. .+-.|.+.-+....+ .+.+++.
T Consensus 381 i~fvGVNGVGKSTNLAKIayWLlq-NkfrVLIAACDTFRs---------------------------------GAvEQLr 426 (587)
T KOG0781|consen 381 ISFVGVNGVGKSTNLAKIAYWLLQ-NKFRVLIAACDTFRS---------------------------------GAVEQLR 426 (587)
T ss_pred EEEEeecCccccchHHHHHHHHHh-CCceEEEEeccchhh---------------------------------hHHHHHH
Confidence 356778888888888888888873 444555555544331 1112222
Q ss_pred HHHHHHHHhcCceEEEEE-eeC----ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 86 DIVNTVARQKQIVVVMKI-FWG----DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~g----~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
-.++....-.|-.++.-. =+| .++.+-+++|+..+.|.|.|..-++......++++.+.-+--+-|=-|+.|
T Consensus 427 tHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~v 503 (587)
T KOG0781|consen 427 THVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFV 503 (587)
T ss_pred HHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEe
Confidence 233322211221111111 112 357788899999999999999888877777788777663333334444444
No 111
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=81.90 E-value=12 Score=24.66 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=20.1
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
++++-.++..+..+...+..++.. +..+.++...
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D 37 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAAD 37 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcC
Confidence 344445565666667777776644 5566666543
No 112
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=81.83 E-value=24 Score=27.93 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=59.8
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
.+++-++.+.--..++.+ |+..+-.+.++-|...+.+. .+
T Consensus 361 dviltyg~s~vV~~ill~----A~~~~k~frVvVVDSRP~~E---------------------------------G~--- 400 (556)
T KOG1467|consen 361 DVLLTYGSSSVVNMILLE----AKELGKKFRVVVVDSRPNLE---------------------------------GR--- 400 (556)
T ss_pred CEEEEecchHHHHHHHHH----HHHhCcceEEEEEeCCCCcc---------------------------------hH---
Confidence 466667776644445444 55555666777676666432 13
Q ss_pred HHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC---CccceecccchhHHHh-hcCCCcEEEEc
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL---GKLKRAIMGSVSNYVV-NNGSCPVTVVK 158 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~---~~~~~~~~gs~~~~l~-~~~~~pVlvv~ 158 (164)
.+.+.+...|+++++....+ ...|. .+ ++-|++|.+.- +.+-.. .|...-.++ ++..+|||++=
T Consensus 401 -~~lr~Lv~~GinctYv~I~a--~syim---~e--vtkvfLGahailsNG~vysR-~GTa~valvAna~nVPVlVCC 468 (556)
T KOG1467|consen 401 -KLLRRLVDRGINCTYVLINA--ASYIM---LE--VTKVFLGAHAILSNGAVYSR-VGTACVALVANAFNVPVLVCC 468 (556)
T ss_pred -HHHHHHHHcCCCeEEEEehh--HHHHH---Hh--cceeeechhhhhcCcchhhh-cchHHHHHHhcccCCCEEEEe
Confidence 33344557899998866553 33343 22 57899998842 112221 243333444 45689999984
No 113
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=81.42 E-value=9.3 Score=25.75 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=25.0
Q ss_pred eEEEEeCCChh-hHHHHHHHHhhcccCCCEEEEE
Q 031168 6 RVGVAVDFSAC-SKKALQWAADNVVRNGDHLILV 38 (164)
Q Consensus 6 ~ILv~~d~s~~-~~~~l~~a~~la~~~~~~l~~l 38 (164)
||++++-++.. ....++....+.++.+.+++++
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv 34 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVF 34 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 68999999843 4557888888887777776655
No 114
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=81.29 E-value=16 Score=25.44 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=25.8
Q ss_pred HHHHHhcCceEEEEEeeC-----ChhHHHHHHhhhcCCcEEEEeec
Q 031168 89 NTVARQKQIVVVMKIFWG-----DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g-----~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+++.|+++...-... .-.+++++..++.++|++|+...
T Consensus 42 ~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy 87 (207)
T PLN02331 42 AEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGY 87 (207)
T ss_pred HHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeCc
Confidence 445667788764322211 11457778888889999998543
No 115
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.08 E-value=23 Score=27.35 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCCh---hHHHHHHhhhcCCcEEEEeecCCCccceecc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDP---REKICEAIDKIPLSCLVIGNRGLGKLKRAIM 139 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~I~~~a~~~~~dliVig~~~~~~~~~~~~ 139 (164)
.+.++++..+.+.++++...-.+-+| +.+=++..+..++|+|++.+.++-....-+|
T Consensus 143 gAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLf 202 (483)
T KOG0780|consen 143 GAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLF 202 (483)
T ss_pred chHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHH
Confidence 36777888788888887665444454 4444566777889999999887655444333
No 116
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=80.89 E-value=5.5 Score=28.78 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=53.0
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
||-+.+.....++.-++-|-++.+..+.. .+.|+..+..+. .+.+...
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~-~I~h~tyPdnf~-------------------------------~e~EttI 51 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV-MIKHVTYPDNFM-------------------------------SEQETTI 51 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH-EEEEEE--TTGG-------------------------------GCHHHHH
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc-eEEEEeCCCccc-------------------------------chHHHHH
Confidence 56666666666777888888888887654 788888877653 1235556
Q ss_pred HHHHHHHHhcCceEEEEEee-CCh-hHHHHHHhhhcCCcEEEEeecC
Q 031168 86 DIVNTVARQKQIVVVMKIFW-GDP-REKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-g~~-~~~I~~~a~~~~~dliVig~~~ 130 (164)
.++..++..+.++ ..++. +.+ .-.-.+-.++...|++.+....
T Consensus 52 skI~~lAdDp~mK--aIVv~q~vpGt~~af~kIkekRpDIl~ia~~~ 96 (275)
T PF12683_consen 52 SKIVSLADDPDMK--AIVVSQAVPGTAEAFRKIKEKRPDILLIAGEP 96 (275)
T ss_dssp HHHHGGGG-TTEE--EEEEE-SS---HHHHHHHHHH-TTSEEEESS-
T ss_pred HHHHHhccCCCcc--EEEEeCCCcchHHHHHHHHhcCCCeEEEcCCC
Confidence 6666655555555 44444 322 3444566777788999997753
No 117
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=80.86 E-value=22 Score=26.90 Aligned_cols=97 Identities=13% Similarity=0.027 Sum_probs=57.2
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
++|+|++++.-+|.-++..+.+ .+.+|+.+|+......... . ... -...+-
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~~----------~---~~~------------c~~~~~ 51 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMKNWEEDDKN----------D---GHG------------CTSAED 51 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEEcccccccc----------c---ccC------------cCCHHH
Confidence 4899999999888766655544 3568899888532110000 0 000 011234
Q ss_pred HHHHHHHHHhcCceEEEEEee-----------------C----------C-h-hHHHHHHhhhc-CCcEEEEeecC
Q 031168 85 LDIVNTVARQKQIVVVMKIFW-----------------G----------D-P-REKICEAIDKI-PLSCLVIGNRG 130 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-----------------g----------~-~-~~~I~~~a~~~-~~dliVig~~~ 130 (164)
.+.+++.++..|+++...-.. | . . ...+.+.|++. ++|.|+.|.+-
T Consensus 52 ~~~a~~va~~lgIp~~vid~~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 52 LRDAQAICEKLGIPLEKVNFQKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHcCCCEEEEECHHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 556666677777766543220 1 0 1 24566788885 99999999864
No 118
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=80.79 E-value=20 Score=26.40 Aligned_cols=35 Identities=26% Similarity=0.088 Sum_probs=26.1
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
+|+|++++.-+|.-++..+... .+.+++++|+...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCC
Confidence 5899999998887666665542 3557999999764
No 119
>PRK08349 hypothetical protein; Validated
Probab=80.43 E-value=16 Score=24.98 Aligned_cols=34 Identities=12% Similarity=-0.024 Sum_probs=25.7
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
.++++.+++..+|..++-.+.. .+.+|+.+|+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 3688999999888766654433 467999999985
No 120
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=80.30 E-value=5.4 Score=24.38 Aligned_cols=67 Identities=6% Similarity=-0.067 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
..+++++.+++.|++++.... +. .++.+.....++|+|++|..-+-. -.-..+++....+||.++++
T Consensus 17 la~k~k~~~~e~gi~~~i~a~--~~-~e~~~~~~~~~~DvIll~PQi~~~------~~~i~~~~~~~~ipv~~I~~ 83 (104)
T PRK09590 17 MAKKTTEYLKEQGKDIEVDAI--TA-TEGEKAIAAAEYDLYLVSPQTKMY------FKQFEEAGAKVGKPVVQIPP 83 (104)
T ss_pred HHHHHHHHHHHCCCceEEEEe--cH-HHHHHhhccCCCCEEEEChHHHHH------HHHHHHHhhhcCCCEEEeCH
Confidence 567778888888998664322 22 235455555568999998652211 12344566666899999875
No 121
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=79.99 E-value=22 Score=26.32 Aligned_cols=29 Identities=24% Similarity=0.028 Sum_probs=22.8
Q ss_pred CCCCceEEEEeCCChh-hHHHHHHHHhhcc
Q 031168 1 MDGTRRVGVAVDFSAC-SKKALQWAADNVV 29 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~-~~~~l~~a~~la~ 29 (164)
|++.|++|-.-|.+.. -..+++.|..+-+
T Consensus 1 ~~~~k~ll~i~dls~~~l~~ll~~A~~~k~ 30 (304)
T PRK00779 1 MLMGRHFLSLDDLSPEELEELLDLAAELKK 30 (304)
T ss_pred CCCCCcEeehhhCCHHHHHHHHHHHHHHHh
Confidence 7888999998899876 5677888877643
No 122
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=79.91 E-value=21 Score=26.18 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=50.5
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCch
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPE 83 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (164)
..||.|.++++..+..++-.+..-- ..++++.++ +...+
T Consensus 93 ~~kiavl~Sg~g~nl~al~~~~~~~-~l~~~i~~v--isn~~-------------------------------------- 131 (289)
T PRK13010 93 RPKVVIMVSKFDHCLNDLLYRWRMG-ELDMDIVGI--ISNHP-------------------------------------- 131 (289)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHCC-CCCcEEEEE--EECCh--------------------------------------
Confidence 4578888888877777766664332 234444443 33221
Q ss_pred HHHHHHHHHHhcCceEEEEEee----CChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW----GDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~----g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+.+++.|+++...-.. ......+.+..+++++|++|+...
T Consensus 132 ---~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 178 (289)
T PRK13010 132 ---DLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARY 178 (289)
T ss_pred ---hHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehh
Confidence 1135677778886642211 123557888899999999999754
No 123
>TIGR00930 2a30 K-Cl cotransporter.
Probab=79.88 E-value=28 Score=30.17 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=62.0
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|||.+.........++++-.+. +.++-..+.||.+.+... .. ++.+...
T Consensus 577 qiLvl~~~p~~~~~Ll~f~~~l~-~~~gl~i~~~v~~~~~~~------------------------~~-----~~~~~~~ 626 (953)
T TIGR00930 577 QCLVLTGPPVCRPALLDFASQFT-KGKGLMICGSVIQGPRLE------------------------CV-----KEAQAAE 626 (953)
T ss_pred eEEEEeCCCcCcHHHHHHHHHhc-cCCcEEEEEEEecCchhh------------------------hH-----HHHHHHH
Confidence 68999988888899999999999 444577777888654210 00 1113345
Q ss_pred HHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhh-----cCCcEEEEeecC
Q 031168 86 DIVNTVARQKQIVVVMKIFWG-DPREKICEAIDK-----IPLSCLVIGNRG 130 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~-----~~~dliVig~~~ 130 (164)
+++..+.++.+++--..+..+ +..+.+-...+. .+++.|++|.+.
T Consensus 627 ~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 677 (953)
T TIGR00930 627 AKIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKK 677 (953)
T ss_pred HHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCcc
Confidence 666667777777755555444 666665555443 457889999873
No 124
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=79.73 E-value=11 Score=28.42 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCC---------hhHHHHHHhhhcCCcEEEEeecC-CCccceecccchhHHHhhcCCCc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGD---------PREKICEAIDKIPLSCLVIGNRG-LGKLKRAIMGSVSNYVVNNGSCP 153 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~---------~~~~I~~~a~~~~~dliVig~~~-~~~~~~~~~gs~~~~l~~~~~~p 153 (164)
--..+...+.+ +.++..-+..|| ..+.|+++++..++|++|.|.-- .++.. .--|.++..|-....+|
T Consensus 36 p~~~l~~~l~~-~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG-~acg~v~~aV~e~~~IP 113 (349)
T PF07355_consen 36 PGLMLEKALKD-DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYG-VACGEVAKAVQEKLGIP 113 (349)
T ss_pred hHHHHHHHhcC-CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHH-HHHHHHHHHHHHhhCCC
Confidence 33445555544 566555555553 46788999999999999999752 23222 23477888888899999
Q ss_pred EEEE
Q 031168 154 VTVV 157 (164)
Q Consensus 154 Vlvv 157 (164)
++.-
T Consensus 114 ~vta 117 (349)
T PF07355_consen 114 VVTA 117 (349)
T ss_pred EEEE
Confidence 9854
No 125
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.65 E-value=21 Score=25.93 Aligned_cols=58 Identities=7% Similarity=0.015 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGS 141 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs 141 (164)
..++++.++...++++.......+..+.+....+..++|+|++...+++......+..
T Consensus 118 ~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~e 175 (270)
T PRK06731 118 TVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEE 175 (270)
T ss_pred HHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHH
Confidence 5556666666667665432111233444434444456899999998877544433333
No 126
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=79.27 E-value=24 Score=26.49 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=52.0
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
.++|++++..+|..++..+.. ..+..+.++|+...-. .+...
T Consensus 61 D~iV~lSGGkDSs~la~ll~~---~~gl~~l~vt~~~~~~-----------------------------------~e~~~ 102 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKK---KLGLNPLLVTVDPGWN-----------------------------------TELGV 102 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHH---HhCCceEEEEECCCCC-----------------------------------CHHHH
Confidence 489999999888766544432 3455666677653221 02233
Q ss_pred HHHHHHHHhcCceEEEEEee-----------------------CChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 86 DIVNTVARQKQIVVVMKIFW-----------------------GDPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-----------------------g~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
+.++..++..|++....... ......+.+.|.++++.+|+-|.+..
T Consensus 103 ~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 103 KNLNNLIKKLGFDLHTITINPETFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHH
Confidence 34444444455544333221 12345667889999999999988743
No 127
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=79.00 E-value=18 Score=24.87 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=23.4
Q ss_pred EeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 10 AVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 10 ~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
+.-.++.+..++..+..+++..+..+.++.+-.
T Consensus 30 ~~vi~e~~~~~l~ea~~la~~~g~~v~av~~G~ 62 (202)
T cd01714 30 PLIINPYDEYAVEEALRLKEKYGGEVTVVSMGP 62 (202)
T ss_pred CccCChHhHHHHHHHHHhhhhcCCEEEEEEECC
Confidence 334556677888899998877777777766543
No 128
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=78.84 E-value=20 Score=25.32 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+++++...+.+.++.. ...|.+..+-+..+.+.++|.+|+|+.
T Consensus 165 KI~~lr~~~~~~~~~~~I-eVDGGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 165 RVIQVENRLGNRRVEKLI-SIDGSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHHHHHhcCCCceE-EEECCCCHHHHHHHHHCCCCEEEEChh
Confidence 444555555566766544 445666666666777778999999954
No 129
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=78.84 E-value=7 Score=24.19 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=32.8
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
.+....+.|...++..||+-+. + |..+..+.+. .+|||+.+-++
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~--s-------G~ta~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTE--S-------GRTARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-S--S-------SHHHHHHHHT-TSSEEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEECC--C-------chHHHHHHhhCCCCeEEEEcCc
Confidence 3556778899999998988765 2 6778888874 67999988654
No 130
>PRK11914 diacylglycerol kinase; Reviewed
Probab=78.73 E-value=17 Score=26.67 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
.+..+++.+.+++.++++....... .-+.++.+.+...++|+||+... -+.+. .+++.+. ..+.|+-++|-.
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GG-DGTi~-----evv~~l~-~~~~~lgiiP~G 97 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGG-DGVIS-----NALQVLA-GTDIPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECC-chHHH-----HHhHHhc-cCCCcEEEEeCC
Confidence 3455566677777888776554433 44667777666777898777543 34333 2334343 457888888854
Q ss_pred C
Q 031168 161 I 161 (164)
Q Consensus 161 ~ 161 (164)
.
T Consensus 98 T 98 (306)
T PRK11914 98 T 98 (306)
T ss_pred C
Confidence 3
No 131
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=78.49 E-value=12 Score=25.74 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCC---CcEEEE
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGS---CPVTVV 157 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~---~pVlvv 157 (164)
+..+...++..|.++.. .-.+-+.+.+++.+.+.++|+|.+.......... +....+.+-...+ ++|++-
T Consensus 99 ~~~v~~~l~~~G~~vi~-lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~lr~~~~~~~~~i~vG 171 (201)
T cd02070 99 KNLVATMLEANGFEVID-LGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGG--MKEVIEALKEAGLRDKVKVMVG 171 (201)
T ss_pred HHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHHCCCCcCCeEEEE
Confidence 45667778888988732 1123578999999999999999998753333322 3445555544433 455543
No 132
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.30 E-value=28 Score=26.63 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCcccee
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRA 137 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~ 137 (164)
..+.++.+++..|+++...-..++....+.++ .+.|+|+|...+++.....
T Consensus 182 a~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l---~~~DlVLIDTaG~~~~d~~ 232 (374)
T PRK14722 182 GHEQLRIFGKILGVPVHAVKDGGDLQLALAEL---RNKHMVLIDTIGMSQRDRT 232 (374)
T ss_pred HHHHHHHHHHHcCCceEecCCcccHHHHHHHh---cCCCEEEEcCCCCCcccHH
Confidence 45777777877888776543344655544433 3469999999888765544
No 133
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=78.07 E-value=11 Score=28.93 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=30.6
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
|..-|+||+++.++-.+..+++.+..|- +.|+++.++--..
T Consensus 1 ~l~~k~ill~v~gsiaayk~~~l~r~L~-~~ga~v~vvmt~~ 41 (392)
T COG0452 1 LLEGKRILLGVTGSIAAYKSVELVRLLR-RSGAEVRVVMTES 41 (392)
T ss_pred CCCCceEEEEecCchhhhhHHHHHHHHh-hCCCeeEEEcchh
Confidence 4456799999999998888877776665 6677887774433
No 134
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=78.04 E-value=5.2 Score=25.50 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=36.4
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCCCc----cceecccchhHHHhhcCCCcEEEEcCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGLGK----LKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~~~----~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
...+.|.+..++++++.||+|-+-... -........++.|....+.||.++..+
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr 92 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDER 92 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 457889999999999999999653211 111122345666666668999888654
No 135
>PRK05920 aromatic acid decarboxylase; Validated
Probab=78.00 E-value=6.3 Score=27.29 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=28.9
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
+.+||++++.++-.+..+++..-.|.+. +.+|+++-
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~-g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAA-DYEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 4689999999999888888888888654 66766664
No 136
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=77.73 E-value=5.6 Score=25.10 Aligned_cols=33 Identities=21% Similarity=0.083 Sum_probs=25.7
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEE
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILV 38 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l 38 (164)
|||++++.++.....+.++..+|.+. +.+|.++
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv 33 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVV 33 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEE
Confidence 68999999999988888888888766 6676665
No 137
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=77.64 E-value=20 Score=25.84 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=46.5
Q ss_pred CCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHH---HhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 80 PDPETLDIVNTVARQKQIVVVMKIFWGDPREKICE---AIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~---~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
..+...+.+.+.+.+.|+++..+..-||..+.|.+ .+.+. +|+||+. .|.++...- -+.+.+.+....|+.
T Consensus 18 ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~t-GGLGPT~DD---iT~e~vAka~g~~lv 91 (255)
T COG1058 18 IVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITT-GGLGPTHDD---LTAEAVAKALGRPLV 91 (255)
T ss_pred eecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEEC-CCcCCCccH---hHHHHHHHHhCCCcc
Confidence 44667788889999999999999888877666665 45555 9999985 334443321 123334444455543
No 138
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=77.52 E-value=7.6 Score=26.73 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=28.5
Q ss_pred CCCceEEEEeCCChhhHH-HHHHHHhhcccCCCEEEEEE
Q 031168 2 DGTRRVGVAVDFSACSKK-ALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~-~l~~a~~la~~~~~~l~~l~ 39 (164)
+.-++|++++.++-.+.. +.+.+..|. +.|.+|+++-
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~-k~G~~V~vv~ 40 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLV-DEGAEVTPIV 40 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHH-hCcCEEEEEE
Confidence 467899999999998888 588887775 4477776653
No 139
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=77.40 E-value=6.2 Score=27.35 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=30.3
Q ss_pred HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 110 EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
..+...+.+.+.|.|.+|.+. ....--+..+...+-++.+.||++.|...
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~--gvt~~~~~~~v~~ik~~~~lPvilfp~~~ 63 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSL--GIVESNLDQTVKKIKKITNLPVILFPGNV 63 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcC--CCCHHHHHHHHHHHHhhcCCCEEEECCCc
Confidence 335556777788999998662 11111123344444445789999988654
No 140
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=77.33 E-value=17 Score=23.50 Aligned_cols=34 Identities=24% Similarity=0.080 Sum_probs=23.6
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
.++|++++..+|..++..+.... +.++.++++..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCceEEEEeCC
Confidence 58899999998887776665432 22667777754
No 141
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=77.06 E-value=5.2 Score=29.59 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=33.6
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecC-CCc-cceecccchhHHHhhcCCCcEEEEcCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRG-LGK-LKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~-~~~-~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
.+..+.++...+ +|+||+|... .+. +..+++..+. +.+++++||++.|.+-
T Consensus 163 ~~~~~~l~AI~~--ADlIvlgPGSlyTSI~P~Llv~gi~-eAi~~s~a~kV~V~ni 215 (309)
T cd07044 163 SPSREVLEAIEK--ADNIVIGPGSLYTSILPNISVPGIR-EALKKTXAKKVYVSNI 215 (309)
T ss_pred CCCHHHHHHHHh--CCEEEECCCcCHHHhhhhcCcHhHH-HHHHhcCCCeEEECCC
Confidence 345677777777 7999999763 222 3333444444 4666789999988764
No 142
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=77.06 E-value=9.6 Score=26.79 Aligned_cols=45 Identities=13% Similarity=0.080 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+++++...+.+.++.. .+.|.+..+-+....+.++|.+|+|+.
T Consensus 157 KI~~l~~~~~~~~~~~~I-eVDGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 157 KLRAIRKKIDALGKPIRL-EIDGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHHHHHhcCCCeeE-EEECCCCHHHHHHHHHcCCCEEEEChh
Confidence 344555555555655443 445667666677777778999999964
No 143
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=77.00 E-value=6.1 Score=29.27 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=34.5
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecC-CC-ccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRG-LG-KLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~-~~-~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
.+..+.++..++ +|+||+|... .+ -...+++..+.+ .+++++||++.|.+-.
T Consensus 161 ~a~~~al~AI~~--ADlIvlgPGSlyTSIiPnLlv~gI~e-AI~~s~a~kV~v~N~~ 214 (310)
T TIGR01826 161 PALREAVEAIRE--ADLIILGPGSLYTSIIPNLLVPEIAE-ALRESKAPKVYVCNLM 214 (310)
T ss_pred CCCHHHHHHHHh--CCEEEECCCcCHHHhchhcCchhHHH-HHHhCCCCEEEEeCCC
Confidence 456677777776 7999999763 22 233344555555 5567899998887643
No 144
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=76.92 E-value=27 Score=25.79 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCC---ccceecccchhH-HHhhcCCCcEEEEc
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG---KLKRAIMGSVSN-YVVNNGSCPVTVVK 158 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~---~~~~~~~gs~~~-~l~~~~~~pVlvv~ 158 (164)
-..+.+.+++.|++++..+ .+.... +.++ +|.+++|...-. .+-.. .|...- -+.++...|++++-
T Consensus 159 G~~~ak~L~~~gI~~~~I~--Dsa~~~---~~~~--vd~VivGad~I~~nG~lvnk-iGT~~lA~~A~e~~~Pf~v~a 228 (301)
T COG1184 159 GRIMAKELRQSGIPVTVIV--DSAVGA---FMSR--VDKVLVGADAILANGALVNK-IGTSPLALAARELRVPFYVVA 228 (301)
T ss_pred HHHHHHHHHHcCCceEEEe--chHHHH---HHHh--CCEEEECccceecCCcEEec-cchHHHHHHHHHhCCCEEEEe
Confidence 3455566777887776533 233222 2333 799999998532 22222 343333 35567899999884
No 145
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=76.86 E-value=9 Score=22.90 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
..+.+++.+.+.|++++.... +..+ +.... .++|+|+++..-+.... ..++......+||.++++.
T Consensus 15 ~~~ki~~~~~~~~~~~~v~~~--~~~~-~~~~~--~~~Diil~~Pqv~~~~~------~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIEAV--PESE-LEEYI--DDADVVLLGPQVRYMLD------EVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred HHHHHHHHHHHCCCceEEEEe--cHHH-HHHhc--CCCCEEEEChhHHHHHH------HHHHHhccCCCcEEEcChH
Confidence 566888889999998655433 2222 22333 35799999865332211 2233445568999999864
No 146
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=76.84 E-value=8.2 Score=29.97 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=30.4
Q ss_pred eeC-ChhHHHHHHhhhc---CCcEEEEeecCCCccceeccc-chhHHHhhcCCCcEEEE
Q 031168 104 FWG-DPREKICEAIDKI---PLSCLVIGNRGLGKLKRAIMG-SVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 104 ~~g-~~~~~I~~~a~~~---~~dliVig~~~~~~~~~~~~g-s~~~~l~~~~~~pVlvv 157 (164)
+.| .....|++..+.. ++|+||+++.|-+...=+.|. -..-+.+..+++||+.-
T Consensus 172 vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 172 VQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred CcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEe
Confidence 346 4566666544332 369999998865432222222 12223556779998754
No 147
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=76.68 E-value=30 Score=26.11 Aligned_cols=95 Identities=20% Similarity=0.097 Sum_probs=56.5
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
+|+|++++.-+|..++..+.+ .+.+++.+|+....... + .. .....+-.
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~~~~~~~----------~------~~-----------~~~s~~d~ 49 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMKNWDEDD----------G------KG-----------GCCSEEDL 49 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEecccccc----------c------cc-----------CCCCHHHH
Confidence 589999999888766544433 45678888876432100 0 00 00112334
Q ss_pred HHHHHHHHhcCceEEEEEee-----------------C-----------Ch-hHHHHHHhhhcCCcEEEEeecCC
Q 031168 86 DIVNTVARQKQIVVVMKIFW-----------------G-----------DP-REKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-----------------g-----------~~-~~~I~~~a~~~~~dliVig~~~~ 131 (164)
+.+++.++..|++....-.. | .. ...+.+.|++.++|.|+.|.+..
T Consensus 50 ~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~ 124 (349)
T cd01998 50 KDARRVADQLGIPHYVVNFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYAR 124 (349)
T ss_pred HHHHHHHHHhCCcEEEEECcHHHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCC
Confidence 55666677777765443221 1 11 34556789999999999998754
No 148
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.25 E-value=15 Score=22.48 Aligned_cols=70 Identities=16% Similarity=0.051 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
-+..+...+++.|.++... .. ...+.+.+.+++.++|+|.+.......... .-.+++.+-...+...+++
T Consensus 16 Gl~~la~~l~~~G~~v~~~--d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~--~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDIL--DANVPPEELVEALRAERPDVVGISVSMTPNLPE--AKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEE--ESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHH--HHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEE--CCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHH--HHHHHHHHHhcCCCCEEEE
Confidence 4667777888888877643 22 235899999999999999998742222222 2344554333444333333
No 149
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=75.53 E-value=35 Score=26.27 Aligned_cols=130 Identities=12% Similarity=0.159 Sum_probs=74.8
Q ss_pred hhccc-CCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCcc-chhhhhhcCCCCchHHHHHHHHHHh---c-C---
Q 031168 26 DNVVR-NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSE-PTIMKKYGAKPDPETLDIVNTVARQ---K-Q--- 96 (164)
Q Consensus 26 ~la~~-~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~-~--- 96 (164)
+||+. +.+.|+-+-+.+-+.-. ......|+.........+ -+..+++....-+.....++....+ . .
T Consensus 170 rLA~a~~pA~VvsliiSDVpGDd----~~~IASGPTv~D~tt~~DAlavl~ry~i~~p~~v~~~l~~~~~~t~~~~d~~~ 245 (422)
T COG2379 170 RLAAAAKPAKVVSLIISDVPGDD----PSVIASGPTVPDPTTREDALAVLERYGIALPESVRAHLESERAETPKPGDERF 245 (422)
T ss_pred HHHHhcCCCeEEEEEEccCCCCC----HhhcccCCCCCCCCchHHHHHHHHHhcccccHHHHHHHhhhcccCCCCCcccc
Confidence 45544 45777777776644311 233334444333322222 3355555544344444444421111 1 1
Q ss_pred ceEEEEEee--CChhHHHHHHhhhcCCcEEEEeec--CCCccceecccchhHHHhhcC---CCcEEEEcC
Q 031168 97 IVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNR--GLGKLKRAIMGSVSNYVVNNG---SCPVTVVKQ 159 (164)
Q Consensus 97 ~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~--~~~~~~~~~~gs~~~~l~~~~---~~pVlvv~~ 159 (164)
-+++.++.- ....+++..++++.++..+|+|.. +...--..++.++++++.++- ..|++++-.
T Consensus 246 ~~v~~~iIasn~~sleaaa~~~~~~G~~a~Il~d~ieGEArevg~v~asiarev~~~g~Pf~~P~~llsG 315 (422)
T COG2379 246 ANVENRIIASNRLSLEAAASEARALGFKAVILGDTIEGEAREVGRVHASIAREVARRGRPFKKPVVLLSG 315 (422)
T ss_pred ccceeEEEechHHHHHHHHHHHHhcCCeeEEeeccccccHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEC
Confidence 123444333 366888999999999999999986 344444566789999999876 688888754
No 150
>PRK04527 argininosuccinate synthase; Provisional
Probab=75.47 E-value=35 Score=26.36 Aligned_cols=36 Identities=8% Similarity=0.052 Sum_probs=28.1
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
.++|+|++++.-++.-++.++.+ .+.+++.+++...
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~g 37 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADTG 37 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEeC
Confidence 47999999999888877777655 3568899988654
No 151
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=75.31 E-value=9.7 Score=26.80 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEee-----CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW-----GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
-.+++.+++.+++.|.++...-.. ++..+.|.+..++++++-|.+-..+.-.+. .....+.....+|+-+
T Consensus 48 ~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~-----~~l~~~~~~~~i~~~~ 122 (224)
T PF04244_consen 48 FSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLE-----QRLESLAQQLGIPLEV 122 (224)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHH-----HHHHH----SSS-EEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHH-----HHHHhhhcccCCceEE
Confidence 445677777778889999987665 366889999999999999999877543333 3445567778899988
Q ss_pred EcCC
Q 031168 157 VKQG 160 (164)
Q Consensus 157 v~~~ 160 (164)
++..
T Consensus 123 ~~~~ 126 (224)
T PF04244_consen 123 LEDP 126 (224)
T ss_dssp E--T
T ss_pred eCCC
Confidence 8764
No 152
>PRK14561 hypothetical protein; Provisional
Probab=74.98 E-value=24 Score=24.13 Aligned_cols=31 Identities=26% Similarity=0.065 Sum_probs=20.9
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
||+|++++..+|..++..+..+ ..+.++++.
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~ 32 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVN 32 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEe
Confidence 5999999998887666555332 345566654
No 153
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=74.55 E-value=35 Score=25.84 Aligned_cols=126 Identities=20% Similarity=0.144 Sum_probs=70.1
Q ss_pred ceEEEEeCCC--hhhHHHHHHHHhhcccCC---CE-EEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcC
Q 031168 5 RRVGVAVDFS--ACSKKALQWAADNVVRNG---DH-LILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (164)
Q Consensus 5 ~~ILv~~d~s--~~~~~~l~~a~~la~~~~---~~-l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
++++|-+.+. ++.+.++++|.+|..... .. +.++-+.-..+-. . ..|.+++-+........
T Consensus 52 ~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRT--s-~g~kGl~~DP~ldgs~~---------- 118 (349)
T PRK09261 52 DRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRT--T-VGWKGLINDPDLDGSFD---------- 118 (349)
T ss_pred CCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCC--C-CCCcCCCcCcCcccccc----------
Confidence 3455555433 235678999998865432 22 3344443322111 1 46777664433322221
Q ss_pred CCCchHHHHHHHH---HHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 79 KPDPETLDIVNTV---ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 79 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
.++=+..+++. ..+.|+++-+++..-...+.+.++ +|.+-+|++.... ..-.+++....+||.
T Consensus 119 --i~~GL~~~R~ll~~~~e~GlpvatE~ld~~~~~y~~dl-----vs~~~IGARt~es-------q~hr~~asg~~~PVg 184 (349)
T PRK09261 119 --INDGLRIARKLLLDINELGLPAATEFLDPITPQYIADL-----ISWGAIGARTTES-------QVHRELASGLSCPVG 184 (349)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCeEEEecccccHHHHHhh-----cceeeeccchhcC-------HHHHHHhcCCCCeeE
Confidence 13344444444 577899999988876555444433 6888999885332 233456777889998
Q ss_pred EE
Q 031168 156 VV 157 (164)
Q Consensus 156 vv 157 (164)
+=
T Consensus 185 ~K 186 (349)
T PRK09261 185 FK 186 (349)
T ss_pred ec
Confidence 73
No 154
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=74.44 E-value=13 Score=21.13 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=26.6
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILV 38 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l 38 (164)
.++|.+++|.+.....+...........+..+.++
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 38999999999988878777777766666665544
No 155
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=74.43 E-value=25 Score=24.17 Aligned_cols=40 Identities=5% Similarity=0.050 Sum_probs=29.7
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
-.|++......+....++.+++-++..++++.++++.+..
T Consensus 4 ~~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~ 43 (207)
T COG0655 4 LGINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKN 43 (207)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCC
Confidence 3444444444567788899999988889999999998764
No 156
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=74.30 E-value=16 Score=21.68 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHhcCc-eEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC-CCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQI-VVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG-SCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~ 159 (164)
....+.+...+...|+ .+. . -+-..+.++..+...+|+++++..-... .. -.+.+.+-... .+|++++-.
T Consensus 8 ~~~~~~l~~~l~~~~~~~v~---~-~~~~~~~~~~~~~~~~d~iiid~~~~~~-~~---~~~~~~i~~~~~~~~ii~~t~ 79 (112)
T PF00072_consen 8 PEIRELLEKLLERAGYEEVT---T-ASSGEEALELLKKHPPDLIIIDLELPDG-DG---LELLEQIRQINPSIPIIVVTD 79 (112)
T ss_dssp HHHHHHHHHHHHHTTEEEEE---E-ESSHHHHHHHHHHSTESEEEEESSSSSS-BH---HHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHHHhCCCCEEE---E-ECCHHHHHHHhcccCceEEEEEeeeccc-cc---cccccccccccccccEEEecC
Confidence 3455667777776677 333 2 2345556677788889999999764331 11 24556665544 688888764
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 80 ~ 80 (112)
T PF00072_consen 80 E 80 (112)
T ss_dssp S
T ss_pred C
Confidence 4
No 157
>PRK08185 hypothetical protein; Provisional
Probab=74.29 E-value=20 Score=26.20 Aligned_cols=71 Identities=8% Similarity=-0.070 Sum_probs=50.0
Q ss_pred HHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 91 VARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 91 ~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
.+++.+.-+-..-... .....+++.|++.+..+|+....+........+......+..++.+||.+-=++.
T Consensus 7 ~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg 78 (283)
T PRK08185 7 VAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDHG 78 (283)
T ss_pred HHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3445566554444444 7799999999999999999887754332223366778888889999988765544
No 158
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=74.02 E-value=14 Score=21.59 Aligned_cols=66 Identities=14% Similarity=-0.019 Sum_probs=37.9
Q ss_pred HHHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 89 NTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
.+++++.|++++..+.. ++-...+.+..+..++|+||--........ .-.|...++.+-...+|++
T Consensus 23 a~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~-~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQP-HEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCccee-ccCcHHHHHHHHHcCCCee
Confidence 34455678887543321 222346999999999999998654312111 1124455666655566653
No 159
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.97 E-value=38 Score=26.05 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHH-HhhhcCCcEEEEeecCCCcc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICE-AIDKIPLSCLVIGNRGLGKL 134 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~-~a~~~~~dliVig~~~~~~~ 134 (164)
..++++.+++..|+++...- ..+.+.+ ..+..++|+|++...+++..
T Consensus 221 a~eQL~~~a~~lgvpv~~~~----~~~~l~~~L~~~~~~DlVLIDTaGr~~~ 268 (388)
T PRK12723 221 AKKQIQTYGDIMGIPVKAIE----SFKDLKEEITQSKDFDLVLVDTIGKSPK 268 (388)
T ss_pred HHHHHHHHhhcCCcceEeeC----cHHHHHHHHHHhCCCCEEEEcCCCCCcc
Confidence 45567788877788764322 2222322 12335689999999887753
No 160
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=73.89 E-value=22 Score=28.06 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=58.9
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHH
Q 031168 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
|.--....+|..|+..+ +..|..++|.++..... ... ......-..+.+..+++.
T Consensus 11 DLRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~~----------------~~~------~~~r~~Fl~esL~~L~~~ 65 (472)
T PRK10674 11 DLRLHDNLALAAACRDP---SARVLALFIATPAQWAA----------------HDM------APRQAAFINAQLNALQIA 65 (472)
T ss_pred CCCcchHHHHHHHHhCC---CCCEEEEEEECchhhcc----------------CCC------CHHHHHHHHHHHHHHHHH
Confidence 44445566787776544 23699999988753210 000 000112345677778888
Q ss_pred HHhcCceEEEEEe--eCChhHHHHHHhhhcCCcEEEEeec
Q 031168 92 ARQKQIVVVMKIF--WGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 92 ~~~~~~~~~~~~~--~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+++.|...-...- .|++.+.+.+.+++.+++-|+....
T Consensus 66 L~~~g~~L~v~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 66 LAEKGIPLLFHEVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHcCCceEEEecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 8877776643322 3689999999999999999998654
No 161
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=73.87 E-value=10 Score=21.11 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=34.0
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
|+-||+|.+--........|++-|+.-|...=..|..+-|.+..
T Consensus 3 ~hvYK~IelvGtSp~S~d~Ai~~Ai~RA~~t~~~l~wfeV~~~r 46 (71)
T COG3360 3 HHVYKKIELVGTSPTSIDAAIANAIARAADTLDNLDWFEVVETR 46 (71)
T ss_pred cceEEEEEEEecCCccHHHHHHHHHHHHHhhhhcceEEEEEeec
Confidence 45688887766555567889999999998876688888888754
No 162
>PRK13054 lipid kinase; Reviewed
Probab=73.80 E-value=32 Score=25.14 Aligned_cols=71 Identities=11% Similarity=0.237 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEcC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVKQ 159 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~ 159 (164)
....+.+.+.+.+++++..... ..-+.++.+.+...++|.||+... -+.+. .+++.++.. ..+|+-++|-
T Consensus 19 ~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GG-DGTl~-----evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 19 ELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGG-DGTIN-----EVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECC-ccHHH-----HHHHHHHhhccCCCCcEEEEeC
Confidence 3444555677788887664433 233566666665666888877544 34333 345555543 2578888885
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 93 G 93 (300)
T PRK13054 93 G 93 (300)
T ss_pred C
Confidence 4
No 163
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=73.63 E-value=36 Score=25.57 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCC----hhHHHHHHhhhcCCcEEE-EeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGD----PREKICEAIDKIPLSCLV-IGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~----~~~~I~~~a~~~~~dliV-ig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+++...+.+.++.+...+..|+ ..+.+.+.+++.++|.|| +|...- .+++..+......|++.||
T Consensus 37 ~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~--------~D~aK~ia~~~~~p~i~VP 108 (349)
T cd08550 37 SRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKT--------LDTAKAVADRLDKPIVIVP 108 (349)
T ss_pred HHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHH--------HHHHHHHHHHcCCCEEEeC
Confidence 456777777777877666555554 355677788888999877 553311 2344444444578888887
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
-
T Consensus 109 T 109 (349)
T cd08550 109 T 109 (349)
T ss_pred C
Confidence 4
No 164
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=73.15 E-value=16 Score=23.52 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+...++..|+++... =..-+.+.+++.|.++++|+|.+...
T Consensus 19 ~iv~~~l~~~GfeVi~L-G~~v~~e~~v~aa~~~~adiVglS~l 61 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNL-GVLSPQEEFIKAAIETKADAILVSSL 61 (134)
T ss_pred HHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 45566677788875431 11257899999999999999999765
No 165
>PRK14057 epimerase; Provisional
Probab=73.14 E-value=13 Score=26.71 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+++++...+.+.++.. .+.|.+...-+..+.+.++|.+|+|+.
T Consensus 179 KI~~lr~~~~~~~~~~~I-eVDGGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 179 RVAQLLCLLGDKREGKII-VIDGSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHHHHHhcCCCceE-EEECCCCHHHHHHHHHCCCCEEEEChH
Confidence 344455555556665444 445667666666777778999999954
No 166
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.04 E-value=17 Score=21.61 Aligned_cols=73 Identities=7% Similarity=-0.003 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
+.....+++.+++.|.+...+-..+ .... .|-..... +|+||+-...-+.-. -..+.+.......|++.++
T Consensus 9 ~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~--aD~VIv~t~~vsH~~----~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 9 EDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKK--ADLVIVFTDYVSHNA----MWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred cccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCC--CCEEEEEeCCcChHH----HHHHHHHHHHcCCcEEEEC
Confidence 3466778888888999877762222 2222 25555555 799999766333211 1245667777889999987
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 83 ~~ 84 (97)
T PF10087_consen 83 SR 84 (97)
T ss_pred CC
Confidence 54
No 167
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=72.58 E-value=16 Score=25.88 Aligned_cols=45 Identities=9% Similarity=0.199 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+++++...+.+.++.. .+.|.+..+-+..+.+.++|.+|+|+.
T Consensus 155 KI~~lr~~~~~~~~~~~I-eVDGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 155 KIAELKALRERNGLEYLI-EVDGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHHHHhcCCCeEE-EEECCCCHHHHHHHHHcCCCEEEEChH
Confidence 344455555556666554 345666566666666778999999964
No 168
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=72.36 E-value=9.8 Score=26.91 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=31.9
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
...+.+++.+.+.+.|.|++|.+. ....+..+...+-+..+.||++.|...
T Consensus 19 ~~~~~~~~~~~~~gtDai~VGGS~----~~~~~d~vv~~ik~~~~lPvilfPg~~ 69 (230)
T PF01884_consen 19 PNPEEALEAACESGTDAIIVGGSD----TGVTLDNVVALIKRVTDLPVILFPGSP 69 (230)
T ss_dssp S-HHHHHHHHHCTT-SEEEEE-ST----HCHHHHHHHHHHHHHSSS-EEEETSTC
T ss_pred CCcHHHHHHHHhcCCCEEEECCCC----CccchHHHHHHHHhcCCCCEEEeCCCh
Confidence 445677777788889999999875 112223444545556899999998754
No 169
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=72.34 E-value=13 Score=23.21 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
-+..+...++..|+++...-. ..+.+.+++.+.+.++|.|++....
T Consensus 15 G~~~~~~~l~~~G~~vi~lG~-~vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 15 GAKVIARALRDAGFEVIYTGL-RQTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHcCCCEEEEcccc
Confidence 345566677888888654222 2678899999999999999998764
No 170
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=72.06 E-value=8.9 Score=28.40 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=34.1
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecC-CCc-cceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRG-LGK-LKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~-~~~-~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
.+..+.++..++ +|+||+|... .+. ...+++..+.+ .++.++||++.+.+-.
T Consensus 164 ~~~~~a~~AI~~--AD~Iv~gPGSlyTSI~P~Llv~gI~e-Ai~~s~a~kV~v~N~~ 217 (308)
T cd07187 164 KANPEALEAIEE--ADLIVYGPGSLYTSILPNLLVKGIAE-AIRASKAPKVYICNLM 217 (308)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHHhhhhcCchhHHH-HHHhCCCCEEEEecCC
Confidence 456677777776 7999999763 222 33344444555 5677889988887643
No 171
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=72.03 E-value=30 Score=24.20 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEee-C---------ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW-G---------DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGS 151 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-g---------~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~ 151 (164)
.+....+.+.+++.|+++-..... | +......+.+.+.++|.|-+.... . -...+++...++
T Consensus 108 ~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~--~------~~~~~~i~~~~~ 179 (235)
T cd00958 108 LEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG--D------AESFKEVVEGCP 179 (235)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC--C------HHHHHHHHhcCC
Confidence 335566666777778875443322 1 112222445778899999885321 1 134577888889
Q ss_pred CcEEEEc
Q 031168 152 CPVTVVK 158 (164)
Q Consensus 152 ~pVlvv~ 158 (164)
+||++.-
T Consensus 180 ~pvv~~G 186 (235)
T cd00958 180 VPVVIAG 186 (235)
T ss_pred CCEEEeC
Confidence 9987654
No 172
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=71.95 E-value=7.2 Score=22.30 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=21.7
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLIL 37 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~ 37 (164)
.++|++++|++.....+..+........+.+++.
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 4889999999999888888888866555555543
No 173
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=71.70 E-value=31 Score=24.01 Aligned_cols=95 Identities=9% Similarity=0.073 Sum_probs=53.4
Q ss_pred hhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhc
Q 031168 16 CSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (164)
Q Consensus 16 ~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
....+.++.++++...+.++.++-.-... .+...+.+.+.+.+.
T Consensus 13 ~~~~i~~~~~~~ag~~~~~i~~iptA~~~------------------------------------~~~~~~~~~~~~~~l 56 (217)
T cd03145 13 DNRAILQRFVARAGGAGARIVVIPAASEE------------------------------------PAEVGEEYRDVFERL 56 (217)
T ss_pred CHHHHHHHHHHHcCCCCCcEEEEeCCCcC------------------------------------hhHHHHHHHHHHHHc
Confidence 56678888889987656666544221111 133455566666666
Q ss_pred Cce-EEEEEeeC---ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh
Q 031168 96 QIV-VVMKIFWG---DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN 148 (164)
Q Consensus 96 ~~~-~~~~~~~g---~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~ 148 (164)
|++ +....... .....+.+...+ +|.|+++......+.+.+.++-..++++
T Consensus 57 G~~~v~~~~~~~~~~a~~~~~~~~l~~--ad~I~~~GG~~~~~~~~l~~t~l~~~l~ 111 (217)
T cd03145 57 GAREVEVLVIDSREAANDPEVVARLRD--ADGIFFTGGDQLRITSALGGTPLLDALR 111 (217)
T ss_pred CCceeEEeccCChHHcCCHHHHHHHHh--CCEEEEeCCcHHHHHHHHcCChHHHHHH
Confidence 775 34332221 123445555554 6899998766555555555555555444
No 174
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=71.67 E-value=18 Score=23.04 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+...++..|+++... =..-+.+++++.|.++++|+|.+..-
T Consensus 17 niv~~~L~~~GfeVidL-G~~v~~e~~v~aa~~~~adiVglS~L 59 (128)
T cd02072 17 KILDHAFTEAGFNVVNL-GVLSPQEEFIDAAIETDADAILVSSL 59 (128)
T ss_pred HHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 34555667778875431 11256899999999999999999764
No 175
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=71.35 E-value=33 Score=24.16 Aligned_cols=91 Identities=20% Similarity=0.145 Sum_probs=53.4
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
|+++.+++..+|.-++-++.+- + +++.+...-+...... -....-.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~---~--~V~~L~~~~~~~~~s~-----------------------------~~h~~~~ 47 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE---H--EVISLVGVFSENEESY-----------------------------MFHSPNL 47 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc---C--eeEEEEEEcCCCCCcc-----------------------------ccccCCH
Confidence 5888899999998777777662 2 4444433322211000 0011223
Q ss_pred HHHHHHHHhcCceEEEEEeeC---ChhHHHHHHhhhcCCcEEEEeecC
Q 031168 86 DIVNTVARQKQIVVVMKIFWG---DPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
+.++..++..|++.......| +..+.+.+..++.+++-||.|.=-
T Consensus 48 ~~~~~qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~ 95 (222)
T TIGR00289 48 HLTDLVAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIE 95 (222)
T ss_pred HHHHHHHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccc
Confidence 555566667788865444433 456666677777788999998753
No 176
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=71.25 E-value=17 Score=25.45 Aligned_cols=43 Identities=7% Similarity=0.119 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
++.++++..+.+ ++.. .+.|.+..+-...+...++|.+|.|+.
T Consensus 157 i~~lr~~~~~~~-~~~I-eVDGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 157 IRELRAMIDERL-DILI-EVDGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred HHHHHHHhcccC-CeEE-EEeCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 344444444434 3333 456778777888888889999999984
No 177
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.93 E-value=42 Score=25.20 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCCh----hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDP----REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
...+.+...+++.|+.+......+++ .+.+.+.+++.++|.||-=..+ +. -+++..+......|++.||
T Consensus 36 ~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG-S~------iD~aK~ia~~~~~P~iaIP 108 (351)
T cd08170 36 LVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGG-KT------LDTAKAVADYLGAPVVIVP 108 (351)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCc-hh------hHHHHHHHHHcCCCEEEeC
Confidence 46777788888888887654455543 5567777888999976642222 21 1233334344468888887
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
-
T Consensus 109 T 109 (351)
T cd08170 109 T 109 (351)
T ss_pred C
Confidence 4
No 178
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=70.86 E-value=43 Score=25.25 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
++-++.+.+.+++.|+.+-+.+..-.-.+.+.+ . +|++=+|++.-..+. .. +-+.++.+||++=+.
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~----~-vd~lqIgAr~~~N~~------LL-~~va~~~kPViLk~G 208 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAE----Y-VDILQIGARNMQNFD------LL-KEVGKTNKPVLLKRG 208 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH----h-CCeEEECcccccCHH------HH-HHHHcCCCcEEEeCC
Confidence 556778888899999998887766555555543 3 588888887544322 11 223345777776544
No 179
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=70.80 E-value=31 Score=23.71 Aligned_cols=69 Identities=12% Similarity=-0.018 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEe----ecCCCccceecccchhHHHhhcCC-CcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIG----NRGLGKLKRAIMGSVSNYVVNNGS-CPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig----~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~ 158 (164)
..+.++..+...+..+.. +..-+-.++.++.+...++|++++. -+..+.. ...+.+....| ++++++-
T Consensus 12 ~~~gl~~~L~~~~~~~~v-v~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~------~~i~~i~~~~p~~~iivlt 84 (207)
T PRK15411 12 TRLGLTGYLLSRGVKKRE-INDIETVDDLAIACDSLRPSVVFINEDCFIHDASNS------QRIKQIINQHPNTLFIVFM 84 (207)
T ss_pred HHHHHHHHHHhCCCcceE-EEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChH------HHHHHHHHHCCCCeEEEEE
Confidence 445566666554433333 2223444555566777789999999 3332221 36667766554 8888885
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 85 ~ 85 (207)
T PRK15411 85 A 85 (207)
T ss_pred C
Confidence 4
No 180
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=70.72 E-value=12 Score=22.33 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCC-hhHHHHHHhhhcCCcEEEEeecCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
..+.+++.+++.|+++........ +...+- ...-..+|+|++-....
T Consensus 17 aa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~-~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 17 AAEALEKAAKKLGWEIKVETQGSLGIENELT-AEDIAEADAVILAADVP 64 (96)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCcCccCcCC-HHHHhhCCEEEEecCCC
Confidence 457888889999999887666543 233332 23333479999876643
No 181
>PRK13059 putative lipid kinase; Reviewed
Probab=70.69 E-value=39 Score=24.71 Aligned_cols=71 Identities=20% Similarity=0.148 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
+..+.+.+.+++.|.++...... ++-. +....+...++|.||+.. +-+.+. .+++.++.. .++|+-++|-.
T Consensus 19 ~~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~G-GDGTv~-----evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 19 SELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAG-GDGTVD-----NVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEEC-CccHHH-----HHHHHHHhcCCCCcEEEECCC
Confidence 34556777777888876643333 3223 333344455678776643 334333 355556543 46889998854
No 182
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=70.60 E-value=45 Score=25.38 Aligned_cols=95 Identities=20% Similarity=0.108 Sum_probs=53.2
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
+||+|++++.-+|. .|+.|.+..+-+|+.+|..--..... . ... -...+-
T Consensus 1 ~kV~vamSGGVDSs----vaA~LLk~~G~~V~Gv~m~~~~~~~~------------------~----~~~----c~~~~d 50 (356)
T PF03054_consen 1 KKVLVAMSGGVDSS----VAAALLKEQGYDVIGVTMRNWDEEDE------------------S----GKS----CCSEED 50 (356)
T ss_dssp -EEEEE--SSHHHH----HHHHHHHHCT-EEEEEEEE-SS-SSS------------------H----H-H----HHHHHH
T ss_pred CeEEEEccCCHHHH----HHHHHHHhhcccceEEEEEEeccccc------------------c----CCC----CCchhh
Confidence 58999999987774 45566777888999999875442100 0 000 011345
Q ss_pred HHHHHHHHHhcCceEEEEEee-----------------C-C--h---------hHHHHHHhhh-cCCcEEEEeec
Q 031168 85 LDIVNTVARQKQIVVVMKIFW-----------------G-D--P---------REKICEAIDK-IPLSCLVIGNR 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-----------------g-~--~---------~~~I~~~a~~-~~~dliVig~~ 129 (164)
.+.++..|+..|++....-.. | . | ...+++.|.+ .++|.|..|+.
T Consensus 51 ~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHY 125 (356)
T PF03054_consen 51 IEDARRVAEKLGIPHYVVDLREEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHY 125 (356)
T ss_dssp HHHHHHHHHHHT--EEEEETHHHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---S
T ss_pred HHHHHHHHHhcCCCEEEEChHHHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeecccee
Confidence 677778888888876554322 2 1 1 3558899999 99999999886
No 183
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.36 E-value=47 Score=25.98 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGK 133 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~ 133 (164)
..+.++.++...|+++... .....+.+.++..++|+|++...+++.
T Consensus 267 A~eQLk~yAe~lgvp~~~~----~~~~~l~~~l~~~~~D~VLIDTaGr~~ 312 (432)
T PRK12724 267 AIEQLKRYADTMGMPFYPV----KDIKKFKETLARDGSELILIDTAGYSH 312 (432)
T ss_pred HHHHHHHHHHhcCCCeeeh----HHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 3456666666667765321 113345555555678999998776553
No 184
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=69.92 E-value=15 Score=23.46 Aligned_cols=63 Identities=10% Similarity=0.105 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN 149 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~ 149 (164)
-..-+...++..|+++...-.. .+.+++++.+.++++|.|++.+...+... .+..+.+.+-..
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~~~~~~--~~~~~~~~L~~~ 80 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLAGGHLT--LVPALRKELDKL 80 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCchhhhHH--HHHHHHHHHHhc
Confidence 4455667777788886543222 56779999999999999999776432222 235566655443
No 185
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=69.91 E-value=27 Score=27.48 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=56.1
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHH
Q 031168 12 DFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTV 91 (164)
Q Consensus 12 d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
|..-....+|.+|+.-.... +.++++.++.... ........-..+.++.+++.
T Consensus 11 DLR~~DN~aL~~A~~~~~~~---~~~vfi~~~~~~~------------------------~~~~~~~~Fl~~sL~~L~~~ 63 (461)
T COG0415 11 DLRLTDNAALAAACQSGQPV---IIAVFILDPEQLG------------------------HASPRHAAFLLQSLQALQQS 63 (461)
T ss_pred ccccCChHHHHHHHhcCCCc---eEEEEEechhhcc------------------------ccCHHHHHHHHHHHHHHHHH
Confidence 33445566777777665432 2667776655321 00001112335566777777
Q ss_pred HHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 92 ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 92 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+.+.|++ ..+..|++...|.+++++.+++-|+-...
T Consensus 64 L~~~gi~--L~v~~~~~~~~l~~~~~~~~~~~v~~n~~ 99 (461)
T COG0415 64 LAELGIP--LLVREGDPEQVLPELAKQLAATTVFWNRD 99 (461)
T ss_pred HHHcCCc--eEEEeCCHHHHHHHHHHHhCcceEEeeee
Confidence 7766665 45788999999999999998888877665
No 186
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=69.71 E-value=25 Score=22.92 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHhcCc---eEEEEEeeC--ChhHHHHHHhhhcCCcEEEE-ee--cCCCccceecccchhHHHhh---cC
Q 031168 82 PETLDIVNTVARQKQI---VVVMKIFWG--DPREKICEAIDKIPLSCLVI-GN--RGLGKLKRAIMGSVSNYVVN---NG 150 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~---~~~~~~~~g--~~~~~I~~~a~~~~~dliVi-g~--~~~~~~~~~~~gs~~~~l~~---~~ 150 (164)
+..++...+.+.+.|+ +++...+.| ...-.+.+.++..++|.+|. |. ++.+..-++....++..+++ +.
T Consensus 19 ~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~~ 98 (144)
T PF00885_consen 19 DRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLSLEY 98 (144)
T ss_dssp HHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHHHHHHHHHHHHHhccC
Confidence 5566777777778888 788888888 55666667777777887765 63 66776666666677776665 34
Q ss_pred CCcEE
Q 031168 151 SCPVT 155 (164)
Q Consensus 151 ~~pVl 155 (164)
..||.
T Consensus 99 ~~PV~ 103 (144)
T PF00885_consen 99 GIPVI 103 (144)
T ss_dssp TSEEE
T ss_pred CccEE
Confidence 67774
No 187
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=69.63 E-value=4.3 Score=24.11 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=37.2
Q ss_pred HHHHHHhcCceEEEEE-eeCCh-hH----HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 88 VNTVARQKQIVVVMKI-FWGDP-RE----KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~g~~-~~----~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
..+++++.|+++...+ ..+.+ .. .+.+..++.++||||.-....+.... -.|...++++-...+|.+
T Consensus 22 Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~~~~~-~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 22 TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFSDQEH-TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THHHHHT-HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCccccc-CCcHHHHHHHHHcCCCCc
Confidence 3456677899843332 23433 22 49999999999988887654332111 135555666666666654
No 188
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=69.57 E-value=8.9 Score=28.29 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=30.7
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecC-CCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRG-LGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~-~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
.+....++..++ +|+||+|... .+.+.-.+.-.-..+.++.+++|++.+.+-
T Consensus 172 ~~~p~~l~AI~~--AD~IiigPgs~~TSI~P~L~v~gi~~Ai~~s~a~kV~V~ni 224 (300)
T PF01933_consen 172 KANPEALEAIEE--ADLIIIGPGSLYTSIIPNLLVPGIREAIRESKAPKVYVSNI 224 (300)
T ss_dssp -B-HHHHHHHHH---SEEEE-SS-CCCCCHHHHTSHHHHHHHHHSSSEEEEE-SS
T ss_pred CCCHHHHHHHHh--CCEEEEcCCCchhhhcccccchhHHHHHHhCCCCEEEEcCC
Confidence 456777888777 6999999763 233333333334555777778999888764
No 189
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=69.28 E-value=9.8 Score=28.97 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=8.9
Q ss_pred HHHHHHhhhcCCcEEEEe
Q 031168 110 EKICEAIDKIPLSCLVIG 127 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig 127 (164)
.++++.|.+.++|+||++
T Consensus 30 ~~~l~~a~~~~vD~vliA 47 (390)
T COG0420 30 DELLEIAKEEKVDFVLIA 47 (390)
T ss_pred HHHHHHHHHccCCEEEEc
Confidence 444445555555555554
No 190
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=69.18 E-value=21 Score=25.01 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+++++...+.+.++...+ .|.+..+-+....+.++|.+|+|+.
T Consensus 153 kI~~l~~~~~~~~~~~~I~v-dGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 153 KLRAVRKMIDESGRDIRLEI-DGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 44555555555565555444 5656555666666778999999965
No 191
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=69.09 E-value=28 Score=22.39 Aligned_cols=63 Identities=6% Similarity=-0.025 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN 149 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~ 149 (164)
-+..+...++..|+++.. .=..-+.+.+++.+.++++|+|.+......... .+..+.+.+-..
T Consensus 19 G~~iv~~~lr~~G~eVi~-LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~--~~~~~~~~L~~~ 81 (137)
T PRK02261 19 GNKILDRALTEAGFEVIN-LGVMTSQEEFIDAAIETDADAILVSSLYGHGEI--DCRGLREKCIEA 81 (137)
T ss_pred HHHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEcCccccCHH--HHHHHHHHHHhc
Confidence 345566777788888654 112267899999999999999999775332221 224444544443
No 192
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=69.02 E-value=6 Score=25.84 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN 148 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~ 148 (164)
++++++.+++.|++++..-........+.+..++ +|.|+++........+.+-++-...+++
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~--ad~I~~~GG~~~~l~~~l~~t~l~~~i~ 63 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIRE--ADAIFLGGGDTFRLLRQLKETGLDEAIR 63 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHH--SSEEEE--S-HHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHh--CCEEEECCCCHHHHHHHHHhCCHHHHHH
Confidence 4567778888888865544444455577777766 6999997665444444444444444443
No 193
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=68.86 E-value=24 Score=21.61 Aligned_cols=66 Identities=15% Similarity=-0.029 Sum_probs=39.8
Q ss_pred HHHhcCceEEEEEee-CChhHHHHHHhhh-cCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 91 VARQKQIVVVMKIFW-GDPREKICEAIDK-IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 91 ~~~~~~~~~~~~~~~-g~~~~~I~~~a~~-~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
++++.|++++..... ++-...|.+..++ .++|+||--..+...-...-.|....+..-...+|++.
T Consensus 37 ~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 37 VLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 344578887764332 1123668888888 89999988654332111122355566666666888765
No 194
>PLN02828 formyltetrahydrofolate deformylase
Probab=68.78 E-value=42 Score=24.39 Aligned_cols=86 Identities=14% Similarity=0.016 Sum_probs=51.0
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCc
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDP 82 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (164)
..+||.|-++++..+..++-++..-- ..+++|.++-...+.+
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~g-~l~~eI~~ViSn~~~~------------------------------------- 110 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQDG-RLPVDITCVISNHERG------------------------------------- 110 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhcC-CCCceEEEEEeCCCCC-------------------------------------
Confidence 45689999999998887777765432 3455655443332210
Q ss_pred hHHHHHHHHHHhcCceEEEEEee--CChhHHHHHHhhhcCCcEEEEeec
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.-..+.+.+++.|+++...-.. ....+.+++..+ ++|++|+...
T Consensus 111 -~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~--~~DliVLAgy 156 (268)
T PLN02828 111 -PNTHVMRFLERHGIPYHYLPTTKENKREDEILELVK--GTDFLVLARY 156 (268)
T ss_pred -CCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHh--cCCEEEEeee
Confidence 0013445567778887643322 222345666555 4899999755
No 195
>PRK02628 nadE NAD synthetase; Reviewed
Probab=68.22 E-value=38 Score=28.17 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=27.8
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCC---CEEEEEEE
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNG---DHLILVTV 40 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~---~~l~~l~v 40 (164)
...++|+|++++.-+|.-++..+.......+ ..|+.++.
T Consensus 359 ~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 359 TGLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 3578999999999988866666666543334 46777776
No 196
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=68.19 E-value=45 Score=24.43 Aligned_cols=74 Identities=11% Similarity=-0.034 Sum_probs=51.2
Q ss_pred HHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCCCcEEEEcCCC
Q 031168 88 VNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+-..+++.+.-+-..-... .....+++.|++.+..+|+....+.-.... -+++.......+++.+||.+-=++.
T Consensus 9 ~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~ 84 (281)
T PRK06806 9 LLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDHG 84 (281)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3344556676655554444 779999999999999999987764432222 2356677788889999998765544
No 197
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=68.15 E-value=17 Score=28.34 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=31.7
Q ss_pred EeeC-ChhHHHHHH---hhhc-CCcEEEEeecCCCccceeccc-chhHHHhhcCCCcEEEE
Q 031168 103 IFWG-DPREKICEA---IDKI-PLSCLVIGNRGLGKLKRAIMG-SVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 103 ~~~g-~~~~~I~~~---a~~~-~~dliVig~~~~~~~~~~~~g-s~~~~l~~~~~~pVlvv 157 (164)
.+-| +...+|++. +.+. .+|.||+|+.|-+-..-|-|. -..-+-+..|..||+--
T Consensus 171 ~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 171 LVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISA 231 (440)
T ss_pred cccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEee
Confidence 3446 556666654 3333 399999998765432222232 22334556788998754
No 198
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=68.07 E-value=6.3 Score=27.18 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEee
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~ 128 (164)
+..+++++...+.|..+.. .+.|.+...-+....+.++|.+|.|+
T Consensus 151 ~KI~~l~~~~~~~~~~~~I-~vDGGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 151 EKIRELRKLIPENGLDFEI-EVDGGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHHHHHHTCGSEE-EEESSESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHHHHHHhcCCceEE-EEECCCCHHHHHHHHHcCCCEEEECH
Confidence 3455666677776766665 34566666666666777899999996
No 199
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=67.88 E-value=40 Score=23.77 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=50.5
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
|+++.+++..+|..++-+|... + ..+.++++.+.....+.. + .-..
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~---~-~v~~L~t~~~~~~~s~~~----------------------------H--~~~~ 47 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE---H-EVISLVNIMPENEESYMF----------------------------H--GVNA 47 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh---C-eeEEEEEEecCCCCcccc----------------------------c--ccCH
Confidence 4678889999998888877665 2 234555555543211000 0 1122
Q ss_pred HHHHHHHHhcCceEEEEEee---CChhHHHHHHhhhcCCcEEEEeec
Q 031168 86 DIVNTVARQKQIVVVMKIFW---GDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+.+...++..|++....... ++-.+.+.+..++.+++.||.|.-
T Consensus 48 ~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI 94 (223)
T TIGR00290 48 HLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAI 94 (223)
T ss_pred HHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCc
Confidence 34444455567764332222 244556666666667888888875
No 200
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=67.85 E-value=39 Score=24.79 Aligned_cols=72 Identities=8% Similarity=0.053 Sum_probs=48.9
Q ss_pred HHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCCCcEEEEcCCC
Q 031168 90 TVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+.+++.+.-+-..-.. -....++++.|++.+..+|+.-..+.-.... -.+......+..++.+||.+-=++.
T Consensus 11 ~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg 84 (284)
T PRK09195 11 NNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHH 84 (284)
T ss_pred HHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3355556554443333 4789999999999999999987664322222 1345678888899999998765543
No 201
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=67.43 E-value=32 Score=26.85 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=30.0
Q ss_pred eeC-ChhHHHHHHhh----hcCCcEEEEeecCCCccceeccc-chhHHHhhcCCCcEEEE
Q 031168 104 FWG-DPREKICEAID----KIPLSCLVIGNRGLGKLKRAIMG-SVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 104 ~~g-~~~~~I~~~a~----~~~~dliVig~~~~~~~~~~~~g-s~~~~l~~~~~~pVlvv 157 (164)
+.| .....|++..+ ..++|+||+++.|-+...=+.|. -..-+.+..+++||+.-
T Consensus 166 vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 166 VQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred ccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEe
Confidence 346 44555554332 33479999998865432222232 12223456788998764
No 202
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=67.05 E-value=39 Score=23.32 Aligned_cols=36 Identities=14% Similarity=-0.025 Sum_probs=24.5
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
.|+|+.+++.-+|. .|+++..+.|.+|+.+|+...+
T Consensus 4 gk~l~LlSGGiDSp----VAa~lm~krG~~V~~l~f~~~~ 39 (197)
T PF02568_consen 4 GKALALLSGGIDSP----VAAWLMMKRGCEVIALHFDSPP 39 (197)
T ss_dssp -EEEEE-SSCCHHH----HHHHHHHCBT-EEEEEEEE-TT
T ss_pred ceEEEEecCCccHH----HHHHHHHHCCCEEEEEEEECCC
Confidence 47888888877775 3556666779999999998654
No 203
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=66.90 E-value=44 Score=24.55 Aligned_cols=74 Identities=8% Similarity=0.087 Sum_probs=50.0
Q ss_pred HHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccc-eecccchhHHHhhcCCCcEEEEcCCC
Q 031168 88 VNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLK-RAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~-~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+-+.+++.+.-+-..-..+ ....++++.|++.+..+|+.-..+.-... .-++......+..++.+||.+-=++.
T Consensus 9 ~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH~ 84 (284)
T PRK12737 9 MLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDHH 84 (284)
T ss_pred HHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3344555666655444444 78999999999999999998665432211 12345677788889999998765544
No 204
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=66.81 E-value=34 Score=27.61 Aligned_cols=67 Identities=10% Similarity=0.141 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHH--HH-HHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREK--IC-EAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~-~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
++.+.+...+.+.+...+..+..+...++ +. +.....++|.||-. |+++..|-.+.+.||+-++-
T Consensus 24 ~l~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~~ 91 (538)
T PRK15424 24 RLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAA------------GSNGAYLKSRLSVPVILIKP 91 (538)
T ss_pred HHHHHHHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhhCCCcEEEEC------------chHHHHHHhhCCCCEEEecC
Confidence 46677777787777766666555533333 23 33445578888752 56777777788999999876
Q ss_pred CC
Q 031168 160 GI 161 (164)
Q Consensus 160 ~~ 161 (164)
..
T Consensus 92 s~ 93 (538)
T PRK15424 92 SG 93 (538)
T ss_pred CH
Confidence 54
No 205
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=66.74 E-value=44 Score=24.22 Aligned_cols=77 Identities=8% Similarity=0.043 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+..+.+.+.+. .++.+-..+...+. .-++.+.|++.++|.|++..+.......--+-..-+.|+..+++||++...
T Consensus 56 ~~l~~~~~~~~~-~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 56 EAVIEAVVEAVN-GRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred HHHHHHHHHHhC-CCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 334455554432 23443333322233 444557899999999999876433222111123445577778999998743
No 206
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=66.40 E-value=49 Score=24.28 Aligned_cols=72 Identities=10% Similarity=0.066 Sum_probs=49.8
Q ss_pred HHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCCCcEEEEcCCC
Q 031168 90 TVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+.+.+.+.-+-..-... ....++++.|++.+..+|+.-..+.-.... ..+......+..++.+||.+-=++.
T Consensus 9 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg 82 (282)
T TIGR01858 9 QDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHH 82 (282)
T ss_pred HHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 34555566554444444 789999999999999999987764332221 2245678888899999998765544
No 207
>PRK13337 putative lipid kinase; Reviewed
Probab=66.34 E-value=49 Score=24.25 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
+....+.+.+.+.+++++..... ..-+..+.+.+...+.|+||+... -+.+. .+.+.++.. .+.|+-++|..
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GG-DGTl~-----~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 19 KNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGG-DGTLN-----EVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcC-CCHHH-----HHHHHHhhCCCCCcEEEECCc
Confidence 34455666777888887765444 355566666555566788776533 34332 344444433 34688888864
No 208
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=66.28 E-value=33 Score=26.99 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=36.8
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+.+..+++.+++.|....+. ..|++.+.|.+.+++.+++-|+....
T Consensus 49 l~~sL~~L~~~L~~~G~~L~v~-~~g~~~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 49 LKQSLAHLDQSLRSLGTCLVTI-RSTDTVAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHHHHHHHHHcCCceEEE-eCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 3567777888887777765532 24799999999999999999988765
No 209
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=65.98 E-value=59 Score=24.98 Aligned_cols=44 Identities=5% Similarity=-0.011 Sum_probs=25.8
Q ss_pred HHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
+.+..+..+.++-...........+++.+++.+.+.+.+|..+.
T Consensus 226 ~~~~ik~~~a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~~w 269 (403)
T cd06361 226 TEKIIEENKVNVIVVFARQFHVFLLFNKAIERNINKVWIASDNW 269 (403)
T ss_pred HHHHHhcCCCeEEEEEeChHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 33334444444333323335667777888888888888876643
No 210
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=65.97 E-value=43 Score=25.27 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHhcCceEEEEE-ee--C-C----------hhHHHH---HHhh--hcCCcEEEEeecCCCccceecc---
Q 031168 82 PETLDIVNTVARQKQIVVVMKI-FW--G-D----------PREKIC---EAID--KIPLSCLVIGNRGLGKLKRAIM--- 139 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~--g-~----------~~~~I~---~~a~--~~~~dliVig~~~~~~~~~~~~--- 139 (164)
...++++.+.|++.|+++-.++ .+ | + ..+.|. +.+. +.++|++=+-.+.....-.-+-
T Consensus 142 ~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~ 221 (340)
T PRK12858 142 HAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFE 221 (340)
T ss_pred HHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCccccccccccc
Confidence 4467888899999999876653 22 1 1 112222 3333 5889999887664332111110
Q ss_pred ----c----chhHHHhhcCCCcEEEEcCC
Q 031168 140 ----G----SVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 140 ----g----s~~~~l~~~~~~pVlvv~~~ 160 (164)
. ..-.++...++.|+++....
T Consensus 222 ~~~~~~~~~~~f~~~~~a~~~P~vvlsgG 250 (340)
T PRK12858 222 EAYTQEEAFKLFREQSDATDLPFIFLSAG 250 (340)
T ss_pred ccccHHHHHHHHHHHHhhCCCCEEEECCC
Confidence 0 23455677789999998543
No 211
>PRK06801 hypothetical protein; Provisional
Probab=65.61 E-value=51 Score=24.20 Aligned_cols=73 Identities=8% Similarity=-0.088 Sum_probs=51.5
Q ss_pred HHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCCCcEEEEcCCC
Q 031168 89 NTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
-+.+++.+.-+-..-... .....+++.|++.+..+|+....+...... ..+......+..++..||.+-=++.
T Consensus 10 l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~ 84 (286)
T PRK06801 10 LAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHG 84 (286)
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 344555566655544444 779999999999999999987775443222 3356788888999999988765543
No 212
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=65.43 E-value=55 Score=24.80 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCCh----hHHHHHHhhhcCCcEEE-EeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDP----REKICEAIDKIPLSCLV-IGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliV-ig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+++.+.+...|+.+......+++ .+.+.+.+++.++|.|| +|.... .+++..+......|++.||
T Consensus 44 ~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv--------~D~aK~iA~~~~~p~i~IP 115 (366)
T PRK09423 44 VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKT--------LDTAKAVADYLGVPVVIVP 115 (366)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHH--------HHHHHHHHHHcCCCEEEeC
Confidence 5677777777778776444444433 56677788888999887 443211 2344444444467888887
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
-
T Consensus 116 T 116 (366)
T PRK09423 116 T 116 (366)
T ss_pred C
Confidence 4
No 213
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=65.32 E-value=25 Score=26.00 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=32.7
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecC-CCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRG-LGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~-~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+..+.++...+ +|+||+|..+ ..++.-.+.=+-..+.+++++.|++.|-+
T Consensus 172 ~~~p~vl~AI~~--AD~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 172 RPAPEVLEAIED--ADLVIIGPSNPVTSIGPILALPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHHhhhhccchhHHHHHHhCCCCEEEEcC
Confidence 356677777777 6999999763 23333333334445567778888887754
No 214
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.27 E-value=46 Score=23.51 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
......+.+.+++.|+++......+++. ...++.....++|-||+......... ...+ .+.....||+++-.
T Consensus 15 ~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~-----~~i~-~~~~~~iPvV~~~~ 88 (282)
T cd06318 15 AALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLV-----PAVA-AAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchH-----HHHH-HHHHCCCCEEEecC
Confidence 5577777888888898876544444553 34566677788999999653211100 1122 33456789888853
No 215
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=65.23 E-value=34 Score=23.45 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN 149 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~ 149 (164)
=+..+...++..|.++... =.+-+.+.+++.+++.++|+|.+.......... +....+.+-..
T Consensus 100 G~~~v~~~l~~~G~~vi~L-G~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~--~~~~i~~l~~~ 162 (197)
T TIGR02370 100 GKNIVVTMLRANGFDVIDL-GRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYG--QKDINDKLKEE 162 (197)
T ss_pred HHHHHHHHHHhCCcEEEEC-CCCCCHHHHHHHHHHcCCCEEEEccccccCHHH--HHHHHHHHHHc
Confidence 3456667777788886542 123678999999999999999998764443332 24455544444
No 216
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=65.15 E-value=35 Score=26.64 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHhcCceEEEEE-eeC--ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKI-FWG--DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~g--~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
++..+.+.+.+++.++++...- ..+ +.+....+.++..++|.||+-...-+. ++..-.++...++|||+.-
T Consensus 22 ~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~------~~~~~~~~~~~~~Pvll~a 95 (452)
T cd00578 22 EEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGP------AKMWIAGLSELRKPVLLLA 95 (452)
T ss_pred HHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEccccccc------HHHHHHHHHhcCCCEEEEe
Confidence 4445555555555555443321 112 335566677777789999987664332 2333445677899999985
Q ss_pred CCC
Q 031168 159 QGI 161 (164)
Q Consensus 159 ~~~ 161 (164)
...
T Consensus 96 ~~~ 98 (452)
T cd00578 96 TQF 98 (452)
T ss_pred CCC
Confidence 443
No 217
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=65.12 E-value=51 Score=24.01 Aligned_cols=76 Identities=8% Similarity=0.016 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.+.++.+.+... .++.+-..+-..+. .-+..+.+++.++|-+++..+.......--+-.--..|+..++.||++..
T Consensus 57 ~~~~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn 134 (292)
T PRK03170 57 EELIRAVVEAVN-GRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYN 134 (292)
T ss_pred HHHHHHHHHHhC-CCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 334555555442 24554444443344 34455778999999999977643322211112334557777889999884
No 218
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=65.08 E-value=33 Score=22.07 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--cCCcEEEEee
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGN 128 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliVig~ 128 (164)
+.....+.+.+++.|+++......+|-.+.|.+..++ .++|+||+..
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttG 74 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTG 74 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECC
Confidence 4555677777888899877666555545555544322 2689999953
No 219
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=64.98 E-value=60 Score=24.72 Aligned_cols=98 Identities=16% Similarity=0.027 Sum_probs=60.3
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPD 81 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (164)
|+.+||+|+.++.-+|. .++.|.+..+-+|..+|...-.... . .. -.+
T Consensus 1 ~~~~kV~v~mSGGVDSS----VaA~lLk~QGyeViGl~m~~~~~~~-----------~-----~~------------C~s 48 (356)
T COG0482 1 MKKKKVLVGMSGGVDSS----VAAYLLKEQGYEVIGLFMKNWDEDG-----------G-----GG------------CCS 48 (356)
T ss_pred CCCcEEEEEccCCHHHH----HHHHHHHHcCCeEEEEEEEeeccCC-----------C-----Cc------------CCc
Confidence 35689999999887764 4566777778899999976433100 0 00 112
Q ss_pred chHHHHHHHHHHhcCceEEEEEee-----------------C------------ChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW-----------------G------------DPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------g------------~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
.+-.+.++..|...|+++...-.. | --...++++|.+.++|.|+.|..-+
T Consensus 49 ~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar 127 (356)
T COG0482 49 EEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYAR 127 (356)
T ss_pred hhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEe
Confidence 233444555555555554432111 1 1246688999999999999998643
No 220
>PRK13055 putative lipid kinase; Reviewed
Probab=64.74 E-value=57 Score=24.38 Aligned_cols=73 Identities=7% Similarity=0.043 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC--ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG--DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~ 158 (164)
.+..+.+.+.+.+.+++++...... .-+..+.+.+...++|+||+... -+.+. .+++.+... ...|+-++|
T Consensus 19 ~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GG-DGTl~-----evvngl~~~~~~~~LgiiP 92 (334)
T PRK13055 19 KKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGG-DGTIN-----EVVNGIAPLEKRPKMAIIP 92 (334)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECC-CCHHH-----HHHHHHhhcCCCCcEEEEC
Confidence 4556777888888898877655542 34566776666667888887543 33333 344445432 346788888
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
-.
T Consensus 93 ~G 94 (334)
T PRK13055 93 AG 94 (334)
T ss_pred CC
Confidence 54
No 221
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=64.69 E-value=54 Score=24.09 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=49.7
Q ss_pred HHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccc-eecccchhHHHhhcCCCcEEEEcCCC
Q 031168 88 VNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLK-RAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~-~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+-+.+++.+.-+-..-..+ .....+++.|++.+..+|+....+..... .-.+......+..++.+||.+-=++.
T Consensus 9 iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~ 84 (284)
T PRK12857 9 LLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHG 84 (284)
T ss_pred HHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3344555566554444444 78999999999999999998776432221 12345667778889999998765544
No 222
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=64.27 E-value=41 Score=26.18 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCceEEEEEeeCC---------hhHHHHHHhhhcCCcEEEEeecC-CCccceecccchhHHHhhcCCCcEE
Q 031168 86 DIVNTVARQKQIVVVMKIFWGD---------PREKICEAIDKIPLSCLVIGNRG-LGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~---------~~~~I~~~a~~~~~dliVig~~~-~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
..+...+. .+.++..-+..|| ..+.|+++++..++|++|.|.-- .++.. .--|.++..+-.+..+|++
T Consensus 34 ~~l~~~l~-~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG-~acg~va~aV~e~~~IP~v 111 (431)
T TIGR01918 34 QMLNKLLE-EDAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYG-VACGEICKVVQDKLNVPAV 111 (431)
T ss_pred HHHHHHhc-cCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHH-HHHHHHHHHHHHhhCCCeE
Confidence 34444444 4566555555553 23778999999999999999652 23222 2346777778888899987
Q ss_pred EE
Q 031168 156 VV 157 (164)
Q Consensus 156 vv 157 (164)
.-
T Consensus 112 t~ 113 (431)
T TIGR01918 112 TS 113 (431)
T ss_pred EE
Confidence 54
No 223
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=64.25 E-value=68 Score=25.12 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=15.9
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
..+..+++.+.+.+.+...+|..+
T Consensus 243 ~~~~~ll~~a~~~g~~~~wigs~~ 266 (458)
T cd06375 243 EDARELLAAAKRLNASFTWVASDG 266 (458)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecc
Confidence 445667777777777766676554
No 224
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=64.22 E-value=24 Score=22.93 Aligned_cols=53 Identities=8% Similarity=0.076 Sum_probs=36.1
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCc-cc---eecccchhHHHhhcCCCcEEEEcCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGK-LK---RAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~-~~---~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
..+.|.+..++++++.||+|-+..-. .. .-..-..++.|-.+.+.||.++-.+
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 67889999999999999999874221 11 1112344556666778999887543
No 225
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=64.15 E-value=46 Score=24.46 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHhhcCCCcEEEEcCCC
Q 031168 86 DIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+.+.+.+++.+.-+-..-+.+ ....+|++.|++.++..|+=.+.+...... ..+-.....++.+.++||.+--++.
T Consensus 7 ~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg 85 (286)
T COG0191 7 KELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHG 85 (286)
T ss_pred HHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 445555666677665554555 789999999999999999988776443332 2233566777888889998865544
No 226
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=63.84 E-value=18 Score=21.14 Aligned_cols=45 Identities=7% Similarity=0.083 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCceEEEEEeeCC-hhHHHHHHhhhcCCcEEEEeecC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliVig~~~ 130 (164)
.+.+++.+++.|+++..+..... +...+-. ..-..+|+||+....
T Consensus 17 ae~L~~aA~~~G~~i~VE~qg~~g~~~~lt~-~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 17 AEALEKAAKKRGWEVKVETQGSVGAQNALTA-EDIAAADGVILAADR 62 (85)
T ss_pred HHHHHHHHHHCCCeEEEEecCCcCccCCCCH-HHHHhCCEEEEeccC
Confidence 36677777888988877665542 2233321 222237898887654
No 227
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=63.67 E-value=65 Score=24.70 Aligned_cols=49 Identities=10% Similarity=0.172 Sum_probs=30.9
Q ss_pred chHHHHHHHHHH--hcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVAR--QKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
+++.+.+.+.++ ..|++++..-........+.....+ +|.||+|++..+
T Consensus 262 e~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~--~d~ii~GspT~~ 312 (394)
T PRK11921 262 RRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFK--SKAILVGSSTIN 312 (394)
T ss_pred HHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHh--CCEEEEECCCcC
Confidence 455566666665 5677776654444444555554443 799999998643
No 228
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=63.57 E-value=46 Score=25.94 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=43.9
Q ss_pred HHhcCceEEEEEeeCC---------hhHHHHHHhhhcCCcEEEEeecC-CCccceecccchhHHHhhcCCCcEEEE
Q 031168 92 ARQKQIVVVMKIFWGD---------PREKICEAIDKIPLSCLVIGNRG-LGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 92 ~~~~~~~~~~~~~~g~---------~~~~I~~~a~~~~~dliVig~~~-~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
+...+.++..-+..|| ..+.|+++++..++|++|.|.-- .++.. .--|.++..|-.+..+|++.-
T Consensus 39 ~~~~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG-~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 39 LIEEDAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYG-MAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HhcCCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHH-HHHHHHHHHHHHhhCCCeEEE
Confidence 3344566555555553 23778999999999999999652 23222 234677777888889998754
No 229
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=63.57 E-value=67 Score=24.79 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC--CCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG--SCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~--~~pVlvv~ 158 (164)
+...+.+.+-+.+.|+.+...-+......+|++.+.. ++-+|+|++..+.-.-..++.....++.-. ..++.++-
T Consensus 261 ~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~--a~~~vvGsPT~~~~~~p~i~~~l~~v~~~~~~~k~~~vfg 337 (388)
T COG0426 261 EKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILD--AKGLVVGSPTINGGAHPPIQTALGYVLALAPKNKLAGVFG 337 (388)
T ss_pred HHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhh--cceEEEecCcccCCCCchHHHHHHHHHhccCcCceEEEEe
Confidence 5677788888888999999988887788888888887 689999998643322222344444444322 34555553
No 230
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=63.41 E-value=57 Score=23.94 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=24.8
Q ss_pred HHhcCceEEEEEee-C---ChhHHHHHHhhhcCCcEEEEeec
Q 031168 92 ARQKQIVVVMKIFW-G---DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 92 ~~~~~~~~~~~~~~-g---~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+++.|+++...-.. . +....+.+..++.++|++|+...
T Consensus 133 A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 133 AAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLARY 174 (286)
T ss_pred HHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEeCh
Confidence 66778876542111 1 23446788888888999999754
No 231
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=63.31 E-value=64 Score=26.00 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHH---HHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKIC---EAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~---~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
+.+.+.+.+.+.+-..+..+..|+..+.+. +.....++|+||-. |+++..|-.+.+.||+-++..
T Consensus 15 l~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~~s 82 (526)
T TIGR02329 15 LFDLFRDIAPEFDHRANITPIQLGFEDAVREIRQRLGAERCDVVVAG------------GSNGAYLKSRLSLPVIVIKPT 82 (526)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC------------chHHHHHHHhCCCCEEEecCC
Confidence 555566666665433444456666544443 33445578887742 556776777789999988765
Q ss_pred C
Q 031168 161 I 161 (164)
Q Consensus 161 ~ 161 (164)
.
T Consensus 83 ~ 83 (526)
T TIGR02329 83 G 83 (526)
T ss_pred h
Confidence 4
No 232
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=63.23 E-value=64 Score=24.50 Aligned_cols=127 Identities=15% Similarity=0.074 Sum_probs=65.3
Q ss_pred ceEEEEeCCCh--hhHHHHHHHHhhccc---CCCEEEEE-EEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcC
Q 031168 5 RRVGVAVDFSA--CSKKALQWAADNVVR---NGDHLILV-TVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (164)
Q Consensus 5 ~~ILv~~d~s~--~~~~~l~~a~~la~~---~~~~l~~l-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
++.||-+.+.. +...+++||.+|+.. ...++.++ -+.-..+ .. ...|.+++-+........-
T Consensus 52 ~rllvIvGPCSIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKP-RT--s~gwkGl~~DP~ldgs~~i--------- 119 (356)
T PRK12822 52 PRLLVIIGPCSIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKP-RT--RKGWKGLIFDPDLDGSNDI--------- 119 (356)
T ss_pred CCeEEEEcCCcCCCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccC-CC--CCCccccccCCCCCCCccH---------
Confidence 45555554332 346889999988765 33344433 3332221 11 1357776544332222111
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEE---EEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCL---VIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dli---Vig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
...-+..+++.....+.|+++-+++..-...+.+ +|++ -||++.-.. ..-..++....|||.
T Consensus 120 ~~GL~i~R~ll~~~~~~GlPvatE~ld~~~~qy~--------~Dlisw~aIGARt~es-------q~hrelaSgls~PVg 184 (356)
T PRK12822 120 EKGLRLARQLLLSINTLGLATATEFLDTTSFPYI--------ADLICWGAIGARTTES-------QVHRQLASALPCPVG 184 (356)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEeecccccHHHH--------HHHHHhhhhccchhcC-------HHHHHHHhCCCCceE
Confidence 0112233333333677899999888876444444 3455 667663221 123456777889987
Q ss_pred EEc
Q 031168 156 VVK 158 (164)
Q Consensus 156 vv~ 158 (164)
+=+
T Consensus 185 fKn 187 (356)
T PRK12822 185 FKN 187 (356)
T ss_pred ecC
Confidence 643
No 233
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=63.17 E-value=56 Score=23.81 Aligned_cols=70 Identities=14% Similarity=0.274 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc---CCCcEEEEcCC
Q 031168 85 LDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN---GSCPVTVVKQG 160 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~ 160 (164)
...+.+.+++.|++++..... ..-+.++.+.+...+.|.||+.. +-+.+. .+++.+..+ .++|+-++|-.
T Consensus 16 ~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~G-GDGTi~-----ev~ngl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 16 VREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGG-GDGTLR-----EVATALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred HHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEc-CChHHH-----HHHHHHHhhCCCCCCcEEEEcCC
Confidence 334455677788887665433 24466677666566678777643 334333 344555532 24678888854
No 234
>PRK06850 hypothetical protein; Provisional
Probab=63.13 E-value=23 Score=28.32 Aligned_cols=71 Identities=8% Similarity=0.010 Sum_probs=43.9
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccC-----CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCC
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRN-----GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKP 80 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~-----~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
.+.|++++..+|..++..+..-.... ..+|++++....-.++ ... ..
T Consensus 36 P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~P------------------------e~~----~~ 87 (507)
T PRK06850 36 PWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENP------------------------VVV----DW 87 (507)
T ss_pred CeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccH------------------------HHH----HH
Confidence 47899999999998888776543221 2256666664433221 111 12
Q ss_pred CchHHHHHHHHHHhcCceEEEEEe
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIF 104 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ 104 (164)
.++.++.+...+.+.|+++.++++
T Consensus 88 v~~~l~~i~~~a~~~glpi~~~~v 111 (507)
T PRK06850 88 VNKSLERINEAAKKQGLPITPHKL 111 (507)
T ss_pred HHHHHHHHHHHHHHcCCceEEEee
Confidence 355667777777778888776654
No 235
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=63.06 E-value=65 Score=24.49 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=68.5
Q ss_pred ceEEEEeCCC--hhhHHHHHHHHhhcccC---CCEEE-EEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcC
Q 031168 5 RRVGVAVDFS--ACSKKALQWAADNVVRN---GDHLI-LVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (164)
Q Consensus 5 ~~ILv~~d~s--~~~~~~l~~a~~la~~~---~~~l~-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
++.||-+.+. ++-+.+++||.+|.... ..++. ++-+.-..+-.. ..|.+++-+.......
T Consensus 53 ~rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~---~gwkGli~DP~ldgs~----------- 118 (353)
T PRK12755 53 DRLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTT---VGWKGLINDPHLDGSF----------- 118 (353)
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCC---cCCcCCCCCccccccc-----------
Confidence 3455555433 24567899999886553 22333 444433222111 3576665433222221
Q ss_pred CCCchHHHHHHHH---HHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 79 KPDPETLDIVNTV---ARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 79 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
..++=+..+++. ..+.|+++-+++..-...+.+.++ +|.+-+|++.... ..-.+++....+||.
T Consensus 119 -~i~~GL~~~R~ll~~~~e~Glp~atE~ld~~~~~y~~Dl-----vs~~aIGARt~es-------q~hre~aSgl~~PVg 185 (353)
T PRK12755 119 -DIEEGLRIARKLLLDLVELGLPLATEALDPISPQYLGDL-----ISWGAIGARTTES-------QTHREMASGLSMPVG 185 (353)
T ss_pred -cHHHHHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHhh-----hhheeeccchhcC-------HHHHHHhcCCCCeeE
Confidence 112333333333 667799999888876555544444 5778888874332 233457777889988
Q ss_pred EE
Q 031168 156 VV 157 (164)
Q Consensus 156 vv 157 (164)
+=
T Consensus 186 fK 187 (353)
T PRK12755 186 FK 187 (353)
T ss_pred ec
Confidence 73
No 236
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=62.86 E-value=40 Score=23.65 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=18.9
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v 40 (164)
..++.|++|..... .+++.+- ..+..+..+-|
T Consensus 3 ~~~livALD~~~~~-~A~~l~~----~l~~~v~~iKV 34 (218)
T PRK13305 3 RPLLQLALDHTSLE-AAQRDVT----LLKDHVDIVEA 34 (218)
T ss_pred CCCEEEEeCCCCHH-HHHHHHH----HccccCCEEEE
Confidence 45899999988644 4555444 44444444444
No 237
>PRK13057 putative lipid kinase; Reviewed
Probab=62.83 E-value=41 Score=24.41 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
...++.+.+++.|+++...... ..-+..+.+.+ ..++|+||+... -+.+ ..+++.+. ..+.|+-++|-.
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~GG-DGTv-----~~v~~~l~-~~~~~lgiiP~G 83 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVGGG-DGTL-----NAAAPALV-ETGLPLGILPLG 83 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEECc-hHHH-----HHHHHHHh-cCCCcEEEECCC
Confidence 4667778888888887665544 23445555553 345788777543 3332 23444444 457899999854
No 238
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=62.65 E-value=65 Score=24.39 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=39.5
Q ss_pred HHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 89 NTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
...+.+.|++++... .+... ....+.++|.+++|...-..... .-.|+..-.++ ++..+|++++-+
T Consensus 199 a~eL~~~GI~vtlI~--Dsa~~---~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~ 267 (344)
T PRK05720 199 AWELYQAGIDVTVIT--DNMAA---HLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAP 267 (344)
T ss_pred HHHHHHCCCCEEEEc--ccHHH---HHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecc
Confidence 455667799877532 22233 33334568999999975322222 12455555555 566899998754
No 239
>PRK08417 dihydroorotase; Provisional
Probab=62.54 E-value=19 Score=27.45 Aligned_cols=28 Identities=7% Similarity=0.003 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 17 SKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 17 ~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
...++..++.+|+..+++++++|+....
T Consensus 180 E~~~v~~~~~la~~~~~~lhi~hvS~~~ 207 (386)
T PRK08417 180 ETKEVAKMKELAKFYKNKVLFDTLALPR 207 (386)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCHH
Confidence 3457899999999999999999998744
No 240
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=62.30 E-value=52 Score=23.16 Aligned_cols=62 Identities=8% Similarity=0.074 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHh
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVV 147 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~ 147 (164)
...++-+..++.|++.-..+.-+.+.+.|..+..+ +|+|.+=+-..+.-.+.|+.++.++|-
T Consensus 97 ~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~--vD~VllMsVnPGfgGQ~Fi~~~l~Ki~ 158 (220)
T COG0036 97 HIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDD--VDLVLLMSVNPGFGGQKFIPEVLEKIR 158 (220)
T ss_pred CHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhh--CCEEEEEeECCCCcccccCHHHHHHHH
Confidence 44455555667788888877788999999999888 588877666666666667666666553
No 241
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=62.09 E-value=21 Score=26.68 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=33.6
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCC--CccceecccchhHHHhhcCCCcEEEEcC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGL--GKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~--~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+..+.++..++ +|+||+|.... |-...++++.+.+ .++++..|++.+.+
T Consensus 178 ~a~~eaveAI~~--AD~IviGPgSl~TSIlP~Lllp~I~e-aLr~~~ap~i~v~n 229 (323)
T COG0391 178 SAAPEAVEAIKE--ADLIVIGPGSLFTSILPILLLPGIAE-ALRETVAPIVYVCN 229 (323)
T ss_pred CCCHHHHHHHHh--CCEEEEcCCccHhhhchhhchhHHHH-HHHhCCCCEEEecc
Confidence 445677777777 79999997642 2333455666666 44558899888765
No 242
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=62.07 E-value=65 Score=24.43 Aligned_cols=72 Identities=8% Similarity=0.033 Sum_probs=49.6
Q ss_pred HHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCcc-cee---------------cccchhHHHhhcCCC
Q 031168 90 TVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKL-KRA---------------IMGSVSNYVVNNGSC 152 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~-~~~---------------~~gs~~~~l~~~~~~ 152 (164)
..+++.+.-+-..-... .....+++.|++.+..+|+.-+.+.... ... .+......+..++.+
T Consensus 9 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~V 88 (345)
T cd00946 9 DYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGV 88 (345)
T ss_pred HHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCC
Confidence 34555666655444444 7899999999999999999877653221 111 356677788889999
Q ss_pred cEEEEcCCC
Q 031168 153 PVTVVKQGI 161 (164)
Q Consensus 153 pVlvv~~~~ 161 (164)
||.+-=++.
T Consensus 89 PValHLDHg 97 (345)
T cd00946 89 PVVLHTDHC 97 (345)
T ss_pred CEEEECCCC
Confidence 988765544
No 243
>PRK06988 putative formyltransferase; Provisional
Probab=61.86 E-value=63 Score=23.97 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCceEEEEEeeCCh-hHHHHHHhhhcCCcEEEEeec
Q 031168 86 DIVNTVARQKQIVVVMKIFWGDP-REKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliVig~~ 129 (164)
..+.+.+.+.|+++.. ..+. .+++++..++.++|++|+...
T Consensus 45 ~~v~~~A~~~gip~~~---~~~~~~~~~~~~l~~~~~Dliv~~~~ 86 (312)
T PRK06988 45 GSVAAVAAEHGIPVIT---PADPNDPELRAAVAAAAPDFIFSFYY 86 (312)
T ss_pred CHHHHHHHHcCCcEEc---cccCCCHHHHHHHHhcCCCEEEEehh
Confidence 3567778888888643 1222 345677788888999988654
No 244
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=61.84 E-value=63 Score=23.92 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCCh-----hHHHHHHhhhcCCcEEEEeecCCC-ccceecccchhHHHhhcCCCcEEE
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDP-----REKICEAIDKIPLSCLVIGNRGLG-KLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~I~~~a~~~~~dliVig~~~~~-~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
...+.++...+..+++++..++.|.. ...+++...+.+++.|.+-.|.+. ......-=+....+....++||+.
T Consensus 109 ~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~ 188 (309)
T PF01207_consen 109 LLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIA 188 (309)
T ss_dssp HHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEE
T ss_pred HhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEE
Confidence 34444445444557888888877622 466778888899999998665322 221111112344566677777764
No 245
>PRK10481 hypothetical protein; Provisional
Probab=61.66 E-value=54 Score=23.14 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC--ChhHHHHHHhh---hcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG--DPREKICEAID---KIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g--~~~~~I~~~a~---~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
.-+..+++... |+++....... ...+.+.+.++ ..++|+||++.-+.+. .....+-+...+||+.
T Consensus 142 i~~~~~kw~~~-G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-------~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 142 LAQQAQKWQVL-QKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-------RHRDLLQKALDVPVLL 211 (224)
T ss_pred HHHHHHHHHhc-CCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH-------HHHHHHHHHHCcCEEc
Confidence 33444455544 87766544321 33456666666 5689999999887663 2345666778899875
No 246
>PRK00211 sulfur relay protein TusC; Validated
Probab=61.64 E-value=27 Score=21.84 Aligned_cols=39 Identities=5% Similarity=0.071 Sum_probs=27.0
Q ss_pred CceEEEEeCCChh----hHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 4 TRRVGVAVDFSAC----SKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 4 ~~~ILv~~d~s~~----~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
|++|++-+..+|. +..+++.|+..+... .+|.++...+.
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~-~~v~vff~~Dg 43 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAFT-EDIGVFFIDDG 43 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhccc-CCeeEEEEhhh
Confidence 4689999887765 456677777765443 47888887663
No 247
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=61.59 E-value=71 Score=24.43 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=38.2
Q ss_pred HHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 91 VARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 91 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
.+.+.|++++.. .++.+..+. .+.++|.+++|..+-..... .-+|+-.-.++ ++..+|++++-+
T Consensus 222 eL~~~GIpvtlI--~Dsa~~~~m---~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap 288 (363)
T PRK05772 222 ELMEEGIKVTLI--TDTAVGLVM---YKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAP 288 (363)
T ss_pred HHHHCCCCEEEE--ehhHHHHHH---hhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEcc
Confidence 355679987753 233333333 23468999999975332222 12466555555 566899999843
No 248
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=61.57 E-value=52 Score=24.04 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=49.0
Q ss_pred HHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCCCcEEEEcCCC
Q 031168 90 TVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+.+++.+.-+-..-... .....+++.|++.+..+|+--..+...... ..+......+..++.+||.+-=++.
T Consensus 6 ~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~ 79 (276)
T cd00947 6 KKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHG 79 (276)
T ss_pred HHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33455566554444444 789999999999999999876654332222 2356677778888899998865554
No 249
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=61.54 E-value=43 Score=24.05 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+....+.+.+++.|+++......+++ ....++.....++|.++++........ ..-..+...++|++++..
T Consensus 42 ~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~------~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 42 VSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG------NAVKMANQANIPVITLDR 115 (295)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHH------HHHHHHHHCCCCEEEEcc
Confidence 567788888888889887654333344 334455566678998888653221110 112355567889988853
No 250
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=61.50 E-value=42 Score=21.80 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=28.5
Q ss_pred CceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 96 QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
.+.+--++..|.+.+.=.+...++++|.|++|.-..
T Consensus 62 s~ryVD~vi~~~p~~~~~~~i~~~k~Div~lG~D~~ 97 (140)
T COG0615 62 SLRYVDEVILGAPWDIKFEDIEEYKPDIVVLGDDQK 97 (140)
T ss_pred cCcchheeeeCCccccChHHHHHhCCCEEEECCCCc
Confidence 455556677788887768888999999999998754
No 251
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=61.47 E-value=52 Score=25.31 Aligned_cols=35 Identities=20% Similarity=0.022 Sum_probs=24.5
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
+.|+-+++.=+|. -|.+++-+.|.+++.+|....+
T Consensus 177 k~l~LlSGGIDSP----VA~~l~mkRG~~v~~v~f~~~p 211 (383)
T COG0301 177 KVLLLLSGGIDSP----VAAWLMMKRGVEVIPVHFGNPP 211 (383)
T ss_pred cEEEEEeCCCChH----HHHHHHHhcCCEEEEEEEcCCC
Confidence 4555565554444 3567777899999999997655
No 252
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=61.39 E-value=62 Score=23.67 Aligned_cols=65 Identities=8% Similarity=0.050 Sum_probs=37.9
Q ss_pred HHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
+...+.+.|++++... .+....+. ++ +|.+++|...-..... .-+|+..-.++ ++-.+|++++-+
T Consensus 152 la~eL~~~GI~vtlI~--Dsa~~~~m---~~--vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~ 219 (275)
T PRK08335 152 LANELEFLGIEFEVIT--DAQLGLFA---KE--ATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAE 219 (275)
T ss_pred HHHHHHHCCCCEEEEe--ccHHHHHH---Hh--CCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECc
Confidence 3555666799877533 23333333 22 8999999875322222 12455554444 566899999844
No 253
>PRK02929 L-arabinose isomerase; Provisional
Probab=61.16 E-value=60 Score=25.96 Aligned_cols=56 Identities=5% Similarity=-0.025 Sum_probs=36.5
Q ss_pred ceEEEEEeeC--ChhHHHHHHhhhcC----CcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 97 IVVVMKIFWG--DPREKICEAIDKIP----LSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 97 ~~~~~~~~~g--~~~~~I~~~a~~~~----~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+.++.. ..+ +..+.|.+..++.+ +|.||+-.+.-+.- +..-.+++..++|||+...
T Consensus 44 ~~~~vv-~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a------~~~i~~~~~l~~PvL~~~~ 105 (499)
T PRK02929 44 LPVKIV-LKPVLTTPDEITAVCREANYDDNCAGVITWMHTFSPA------KMWIRGLSALQKPLLHLHT 105 (499)
T ss_pred CCeEEE-EcCccCCHHHHHHHHHHccccCCCcEEEEccCCCchH------HHHHHHHHHcCCCEEEEec
Confidence 445543 333 44555666666655 99999987755542 3444568888999999854
No 254
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=61.00 E-value=32 Score=22.32 Aligned_cols=77 Identities=18% Similarity=0.129 Sum_probs=43.4
Q ss_pred hhcCCCCchHHHHHHHHHHhcCceEEEEEee--CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCC
Q 031168 75 KYGAKPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSC 152 (164)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~ 152 (164)
.+.....++..+.+++.+.+.|++++..-.. |...+.|-+.... +|-+|+.....+..+ --....+....+
T Consensus 21 iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~--~dgiIINpga~thtS-----~Ai~DAl~~~~~ 93 (140)
T PF01220_consen 21 IYGTTTLEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDD--VDGIIINPGAYTHTS-----IAIRDALKAISI 93 (140)
T ss_dssp HHTSSHHHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCT--TSEEEEE-GGGGHT------HHHHHHHHCCTS
T ss_pred cCCcCCHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhh--CCEEEEccchhcccc-----HHHHHHHHcCCC
Confidence 3333455677888888888878776654322 3334444333333 899999866443211 122346677789
Q ss_pred cEEEEc
Q 031168 153 PVTVVK 158 (164)
Q Consensus 153 pVlvv~ 158 (164)
|++=|.
T Consensus 94 P~vEVH 99 (140)
T PF01220_consen 94 PVVEVH 99 (140)
T ss_dssp -EEEEE
T ss_pred CEEEEE
Confidence 987653
No 255
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=60.97 E-value=40 Score=21.32 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=28.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--cCCcEEEEe
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIG 127 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliVig 127 (164)
+.....+.+.+++.|.++.......|-.+.|.+..++ .++|+||..
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliitt 64 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITT 64 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEc
Confidence 4556677788888898876554445544444443322 248988884
No 256
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=60.92 E-value=52 Score=22.63 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+++.+++.|+++...-..++. ....++.....++|.+|+........ . .-..+.+.+.|++.+..
T Consensus 15 ~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~------~-~~~~l~~~~ip~v~~~~ 87 (264)
T cd01537 15 AQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAP------T-IVKLARKAGIPVVLVDR 87 (264)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcch------h-HHHHhhhcCCCEEEecc
Confidence 557777777787788776654444443 34444444555799998865432211 1 23456677899988854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 88 ~ 88 (264)
T cd01537 88 D 88 (264)
T ss_pred C
Confidence 3
No 257
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=60.74 E-value=42 Score=21.49 Aligned_cols=49 Identities=6% Similarity=0.067 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-----------------ChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-----------------DPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-----------------~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
....+.+.+.+.+.|++++..-+.. +..+.+.+...+ +|.||++++-..
T Consensus 17 ~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~--aD~iI~~sP~y~ 82 (152)
T PF03358_consen 17 RKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE--ADGIIFASPVYN 82 (152)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH--SSEEEEEEEEBT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceec--CCeEEEeecEEc
Confidence 5677888888877788877764443 223455556655 799999998544
No 258
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=60.50 E-value=19 Score=27.19 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=35.9
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCC-EEEEEEEecCC
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGD-HLILVTVVPEG 44 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~-~l~~l~v~~~~ 44 (164)
.+.+|.|.+++..+|--.|..++.++++.+- +|.++|+.-..
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~ 68 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEA 68 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchh
Confidence 4778999999999999999999999999766 89999886544
No 259
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=60.33 E-value=29 Score=19.54 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhcCc
Q 031168 18 KKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQI 97 (164)
Q Consensus 18 ~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (164)
..++++|..++. .+.++++++-.+... . .......+.+.+.+++.|+
T Consensus 9 ~ig~E~A~~l~~-~g~~vtli~~~~~~~-~-------------------------------~~~~~~~~~~~~~l~~~gV 55 (80)
T PF00070_consen 9 FIGIELAEALAE-LGKEVTLIERSDRLL-P-------------------------------GFDPDAAKILEEYLRKRGV 55 (80)
T ss_dssp HHHHHHHHHHHH-TTSEEEEEESSSSSS-T-------------------------------TSSHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHH-hCcEEEEEeccchhh-h-------------------------------hcCHHHHHHHHHHHHHCCC
Confidence 457788888864 678998887665442 1 1235677778888888888
Q ss_pred eEEE
Q 031168 98 VVVM 101 (164)
Q Consensus 98 ~~~~ 101 (164)
++.+
T Consensus 56 ~v~~ 59 (80)
T PF00070_consen 56 EVHT 59 (80)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7544
No 260
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=60.10 E-value=39 Score=24.62 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHhcCceEEEE-EeeCChhHHHHHHhhhcCCcEEEEeecC
Q 031168 82 PETLDIVNTVARQKQIVVVMK-IFWGDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
.+-++...+..++.++++.-. +.+..-.+.|.++.+++++|+||+..+.
T Consensus 114 ~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 114 PEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 445666677777778875544 4556788999999999999999997663
No 261
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=59.78 E-value=16 Score=23.23 Aligned_cols=41 Identities=27% Similarity=0.222 Sum_probs=34.0
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
..+|+|+-|..+.+....+.++.-....+.++..+...+.+
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~tP 80 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPTP 80 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-HH
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCcH
Confidence 57899999999999999999999998999999988855544
No 262
>PRK14072 6-phosphofructokinase; Provisional
Probab=59.65 E-value=82 Score=24.55 Aligned_cols=38 Identities=5% Similarity=-0.110 Sum_probs=27.0
Q ss_pred CCCCceEEEEeCCChh--hHHHHHHHHhhcccCC--CEEEEEE
Q 031168 1 MDGTRRVGVAVDFSAC--SKKALQWAADNVVRNG--DHLILVT 39 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~--~~~~l~~a~~la~~~~--~~l~~l~ 39 (164)
|| .++|.|...+.+. -..+++.+..-|...+ .+|+.++
T Consensus 1 ~~-~k~i~IltsGGdapGmNaaIr~vv~~a~~~g~~~~V~G~~ 42 (416)
T PRK14072 1 MM-KGNALYAQSGGPTAVINASAAGVIEEARKHKKIGKVYGAR 42 (416)
T ss_pred CC-CceEEEEccCCchHHHHHHHHHHHHHHHHhCCceEEEEEe
Confidence 44 5999999987764 4567777888887777 4555554
No 263
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=59.64 E-value=59 Score=22.89 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+...++++..+++.|+.+.-.-+.-.+.+.|.....+ +|.|.+|..
T Consensus 48 ~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~--~d~IyVgGG 93 (224)
T COG3340 48 DFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMK--ADIIYVGGG 93 (224)
T ss_pred HHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhh--ccEEEECCc
Confidence 5578889999999999988777777888888887777 588988865
No 264
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=59.63 E-value=52 Score=22.23 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHh--cCceEEEEEeeC--C--hhHHHHHHhhhcCCcEEEEeecC
Q 031168 83 ETLDIVNTVARQ--KQIVVVMKIFWG--D--PREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 83 ~~~~~~~~~~~~--~~~~~~~~~~~g--~--~~~~I~~~a~~~~~dliVig~~~ 130 (164)
...+.+.+.+++ +++++... .| + ..+.|++.+.+.++|+|++|-..
T Consensus 59 ~v~~~~~~~l~~~yP~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 59 DVLQQLKVKLIKEYPKLKIVGA--FGPLEPEERKAALAKIARSGAGIVFVGLGC 110 (177)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 344444444433 47776553 44 2 24678999999999999999763
No 265
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=59.36 E-value=28 Score=24.47 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=30.7
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v 40 (164)
.++|.+|+|++.....|...+..+....+..+.++..
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~l 190 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVIEI 190 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4789999999999999999999998877777666543
No 266
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=59.31 E-value=76 Score=24.06 Aligned_cols=127 Identities=14% Similarity=0.063 Sum_probs=64.1
Q ss_pred ceEEEEeCCC--hhhHHHHHHHHhhcccC---CCEEE-EEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcC
Q 031168 5 RRVGVAVDFS--ACSKKALQWAADNVVRN---GDHLI-LVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGA 78 (164)
Q Consensus 5 ~~ILv~~d~s--~~~~~~l~~a~~la~~~---~~~l~-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (164)
+++||-+.+. ++...+++||.+|.... ...+. ++.+.-..+ .+...|.++--+........-
T Consensus 51 ~rllvIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eKP---RTt~gWKGli~DP~ldgsf~i--------- 118 (348)
T PRK12756 51 PRLLVIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEKP---RTVVGWKGLISDPDLDGSYRV--------- 118 (348)
T ss_pred CceEEEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEeccccC---CCCcccccccCCCCCCCCccH---------
Confidence 4556655443 24578899998776542 33444 444433221 112566665544333222211
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEE---EEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCL---VIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dli---Vig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
...-...+++.....+.|+++.+++..--.. ++-+|+| .+|++.-.. ..-..++....|||.
T Consensus 119 ~~GL~~~R~ll~~i~~~GlP~atE~ld~~~~--------qY~~DliSwgaIGARt~es-------q~hre~ASgls~PVg 183 (348)
T PRK12756 119 NHGLELARKLLLQINELGLPTATEFLDMVTG--------QYIADLISWGAIGARTTES-------QIHREMASALSCPVG 183 (348)
T ss_pred HHHHHHHHHHHHHHHHcCCceeehhcccccH--------HHHHHHHhhhhhccccccC-------HHHHHHHhcCCCceE
Confidence 0111222222222367799888876654222 3335677 667663221 234567777889987
Q ss_pred EEc
Q 031168 156 VVK 158 (164)
Q Consensus 156 vv~ 158 (164)
+=.
T Consensus 184 fKN 186 (348)
T PRK12756 184 FKN 186 (348)
T ss_pred ecC
Confidence 644
No 267
>PHA02031 putative DnaG-like primase
Probab=58.81 E-value=20 Score=25.91 Aligned_cols=37 Identities=11% Similarity=-0.127 Sum_probs=30.9
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
++|++++|++.....|...|+.++...+..+.++.+-
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~lP 243 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIITP 243 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEECC
Confidence 7899999999999999889999887777776666553
No 268
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=58.67 E-value=40 Score=26.62 Aligned_cols=93 Identities=14% Similarity=-0.016 Sum_probs=59.7
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
.++.|++.+ ....++.|..+... +..++++|-.+..-.. -....+
T Consensus 213 ~~~vV~vG~---G~ig~Evaa~l~~~-~~~VT~V~~e~~~~~~-------------------------------lf~~~i 257 (478)
T KOG1336|consen 213 GGKVVCVGG---GFIGMEVAAALVSK-AKSVTVVFPEPWLLPR-------------------------------LFGPSI 257 (478)
T ss_pred CceEEEECc---hHHHHHHHHHHHhc-CceEEEEccCccchhh-------------------------------hhhHHH
Confidence 456666643 34567777777655 6688888765543211 122556
Q ss_pred HHHHHHHHHhcCceEEEEEe----e----CChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 85 LDIVNTVARQKQIVVVMKIF----W----GDPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~----~----g~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
.+.+..++++.|+++..-.. . |...+..+.-.+...+|++|+|...+.
T Consensus 258 ~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 258 GQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 77788888888887654422 1 344555666677788999999987543
No 269
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=58.54 E-value=27 Score=27.02 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=8.9
Q ss_pred CCCcEEEEcCCC
Q 031168 150 GSCPVTVVKQGI 161 (164)
Q Consensus 150 ~~~pVlvv~~~~ 161 (164)
...||+++....
T Consensus 109 ~~iPVf~I~GNH 120 (405)
T TIGR00583 109 VAIPVFSIHGNH 120 (405)
T ss_pred CCCCEEEEcCCC
Confidence 478999997543
No 270
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=58.37 E-value=40 Score=20.96 Aligned_cols=35 Identities=17% Similarity=0.075 Sum_probs=23.5
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEE
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v 40 (164)
||+++.-..+...-.+..+..+.+..|-+++.+-.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~ 35 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGL 35 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCC
Confidence 45666666666666777777777777766665543
No 271
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=58.33 E-value=74 Score=23.63 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
+...+.+.|++++... .+..-.++ .+ +|.+++|...-..... .-.|+..-.++ ++...||+++-+
T Consensus 163 ~a~~L~~~GI~vtlI~--Dsav~~~m---~~--vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~ 230 (310)
T PRK08535 163 TAKELAEYGIPVTLIV--DSAVRYFM---KD--VDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAE 230 (310)
T ss_pred HHHHHHHCCCCEEEEe--hhHHHHHH---Hh--CCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecc
Confidence 4445567799887533 23333333 22 8999999975322221 12355544444 566899998843
No 272
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=57.98 E-value=79 Score=23.82 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=39.3
Q ss_pred HHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCcccee--cccchhHHHh-hcCCCcEEEEcC
Q 031168 89 NTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRA--IMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~--~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
...+.+.|++++.. ..+.... .....++|.+++|...-...... -+|+-.-.++ ++..+|++++-+
T Consensus 189 a~eL~~~GI~vtlI--~Dsa~~~---~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 189 AWELAQEGIDHAII--ADNAAGY---FMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHHHHHCCCCEEEE--cccHHHH---HhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEecc
Confidence 45566678887753 2233333 33445689999999753322221 2455555555 566899999743
No 273
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=57.81 E-value=72 Score=23.30 Aligned_cols=73 Identities=10% Similarity=0.001 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
..+.+.+... .++++-..+-. +.. -++.+.+++.++|.+++-.+.......--+-.--..|+..++.||++..
T Consensus 58 l~~~~~~~~~-~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 58 VVRAAVEETA-GRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred HHHHHHHHhC-CCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4444444432 34555544433 443 3455789999999999976644322111111233457777899999985
No 274
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=57.63 E-value=63 Score=22.58 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|+++......+++ ....++.+...++|-+|+......... ...+ -+...++||+++..
T Consensus 15 ~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-----~~~~-~~~~~~ipvV~~~~ 88 (267)
T cd06322 15 IELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIR-----AAIA-KAKKAGIPVITVDI 88 (267)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhH-----HHHH-HHHHCCCCEEEEcc
Confidence 557778888888888877654433444 335555566778999999643221111 1122 24456789988853
No 275
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=57.49 E-value=77 Score=23.52 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCcccee--cccchhHHHh-hcCCCcEEEEcC
Q 031168 88 VNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRA--IMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~--~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
+...+.+.|++++... .+.... ..+..++|.+++|...-...... -.|+..-.++ ++...||+++-+
T Consensus 170 ~a~~L~~~gI~vtlI~--Dsa~~~---~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~ 239 (303)
T TIGR00524 170 TAWELMQDGIDVTLIT--DSMAAY---FMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAP 239 (303)
T ss_pred HHHHHHHCCCCEEEEC--hhHHHH---HccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEecc
Confidence 3444556788877532 222222 23335689999999753222221 2355555544 566899998843
No 276
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=57.28 E-value=73 Score=23.23 Aligned_cols=67 Identities=15% Similarity=0.256 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC---CccceecccchhHHHhh-cCCCcEEEEcC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL---GKLKRAIMGSVSNYVVN-NGSCPVTVVKQ 159 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~---~~~~~~~~gs~~~~l~~-~~~~pVlvv~~ 159 (164)
-..+.+.+.+.|++++..+ ++....+. + .+|+|++|..+- +++-. .+|...-.++. +.+.|+.++-.
T Consensus 170 G~lm~~~L~~~~IPvtlvl--DSaVgyvM----e-~vD~VlVGAEGVvEsGGIIN-~iGTyq~~v~Ak~~~kPfYV~AE 240 (313)
T KOG1466|consen 170 GKLMAKELKKLGIPVTLVL--DSAVGYVM----E-RVDLVLVGAEGVVESGGIIN-KIGTYQVAVCAKSMNKPFYVVAE 240 (313)
T ss_pred hhHHHHHHHhcCCCeEEEe--hhhHHHHH----h-hccEEEEccceeeecCceee-ecccchhhhhHHhcCCCeEEEee
Confidence 3445555667799887643 22222222 2 379999999863 22222 35666666554 56899998854
No 277
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=57.24 E-value=15 Score=24.14 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=8.4
Q ss_pred HHHHHHhhhcCCcEEEEee
Q 031168 110 EKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~ 128 (164)
+.|.++...+++|+|++|.
T Consensus 53 ~~l~~~i~~~kP~vI~v~g 71 (150)
T PF14639_consen 53 ERLKKFIEKHKPDVIAVGG 71 (150)
T ss_dssp HHHHHHHHHH--SEEEE--
T ss_pred HHHHHHHHHcCCeEEEEcC
Confidence 3444555556666666643
No 278
>PRK00861 putative lipid kinase; Reviewed
Probab=57.21 E-value=72 Score=23.31 Aligned_cols=69 Identities=9% Similarity=0.210 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
..+.+...+++ +.+++...... .-+.++.+.+...+.|+||+... -+.+. .+++.+. ...+|+-++|-.
T Consensus 21 ~~~~i~~~l~~-~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GG-DGTl~-----evv~~l~-~~~~~lgviP~G 90 (300)
T PRK00861 21 DLALIRAILEP-EMDLDIYLTTPEIGADQLAQEAIERGAELIIASGG-DGTLS-----AVAGALI-GTDIPLGIIPRG 90 (300)
T ss_pred hHHHHHHHHHh-cCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECC-hHHHH-----HHHHHHh-cCCCcEEEEcCC
Confidence 34555555554 45665554443 45677777776677898776433 34333 2344444 346788888864
No 279
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=57.06 E-value=73 Score=23.16 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHh-cCceEEEEEee-C--ChhHHHHHHhhhc--CCcEEEEeec
Q 031168 82 PETLDIVNTVARQ-KQIVVVMKIFW-G--DPREKICEAIDKI--PLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~-g--~~~~~I~~~a~~~--~~dliVig~~ 129 (164)
++.++.+.+.++. .++++++.... . +..+.+.+..++. .+|++|=...
T Consensus 40 ~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 40 EDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred HHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence 5556556555544 46777666443 2 3345555554444 7899887543
No 280
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=57.01 E-value=89 Score=24.11 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=25.3
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
|++++++.-++..++.++.+. .+.+|+.+++...
T Consensus 1 Vvva~SGGlDSsvll~~l~e~---~~~eV~av~~d~G 34 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK---GGYEVIAVTADVG 34 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh---CCCeEEEEEEECC
Confidence 578888888888777777553 3458999998764
No 281
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.01 E-value=21 Score=25.54 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGD 107 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~ 107 (164)
.++.+.+.+.+.++ ...+..||
T Consensus 27 ~l~~l~~~~~~~~~--D~lli~GD 48 (253)
T TIGR00619 27 FLDDLLEFAKAEQI--DALLVAGD 48 (253)
T ss_pred HHHHHHHHHHHcCC--CEEEECCc
Confidence 45555555555443 33444443
No 282
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=56.91 E-value=62 Score=23.41 Aligned_cols=77 Identities=10% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC-ChhHH-HHHHhhhcCCcEEEEeecCCCccceecccch---------h-HHHhhcCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG-DPREK-ICEAIDKIPLSCLVIGNRGLGKLKRAIMGSV---------S-NYVVNNGS 151 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~-I~~~a~~~~~dliVig~~~~~~~~~~~~gs~---------~-~~l~~~~~ 151 (164)
......-..+..| +.+..+++| ++... .++.|-+...+.+|+-+.=.+..+ .+...+ . ..=+++..
T Consensus 115 i~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~~~alVL~SPf~S~~r-v~~~~~~~~~~~d~f~~i~kI~~i~ 192 (258)
T KOG1552|consen 115 IKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYPLAAVVLHSPFTSGMR-VAFPDTKTTYCFDAFPNIEKISKIT 192 (258)
T ss_pred HHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCCcceEEEeccchhhhh-hhccCcceEEeeccccccCcceecc
Confidence 3333333334457 778888888 44322 467777777888888665322211 111100 0 11234567
Q ss_pred CcEEEEcCCCC
Q 031168 152 CPVTVVKQGIH 162 (164)
Q Consensus 152 ~pVlvv~~~~~ 162 (164)
||||++....+
T Consensus 193 ~PVLiiHgtdD 203 (258)
T KOG1552|consen 193 CPVLIIHGTDD 203 (258)
T ss_pred CCEEEEecccC
Confidence 99999975443
No 283
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=56.82 E-value=64 Score=22.48 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC-CCcEEE
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG-SCPVTV 156 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~-~~pVlv 156 (164)
+..+...++..|+++... =..-+.+.+++.+.++++|+|.+...-..... .+..+.+.+-... .++|++
T Consensus 105 ~~iv~~~l~~~G~~Vi~L-G~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~--~~~~~i~~L~~~~~~~~i~v 174 (213)
T cd02069 105 KNLVGVILSNNGYEVIDL-GVMVPIEKILEAAKEHKADIIGLSGLLVPSLD--EMVEVAEEMNRRGIKIPLLI 174 (213)
T ss_pred HHHHHHHHHhCCCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEccchhccHH--HHHHHHHHHHhcCCCCeEEE
Confidence 455666777788886541 12367999999999999999999765333222 2244555554443 355544
No 284
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=56.50 E-value=17 Score=20.88 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=24.7
Q ss_pred eEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCc
Q 031168 98 VVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGK 133 (164)
Q Consensus 98 ~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~ 133 (164)
.+....++|+.+..=.. ...++|+.|++......
T Consensus 17 ~i~~i~LfGS~arg~~~--~~SDiDl~vi~~~~~~~ 50 (93)
T cd05403 17 GVEKVYLFGSYARGDAR--PDSDIDLLVIFDDPLDP 50 (93)
T ss_pred CccEEEEEeeeecCCCC--CCCCeeEEEEeCCCCCH
Confidence 57777888987765444 45678999999876543
No 285
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=56.37 E-value=82 Score=23.52 Aligned_cols=28 Identities=18% Similarity=-0.053 Sum_probs=20.8
Q ss_pred CCCceEEEEeCCChh-hHHHHHHHHhhcc
Q 031168 2 DGTRRVGVAVDFSAC-SKKALQWAADNVV 29 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~-~~~~l~~a~~la~ 29 (164)
...++++---|.+.. -...++.|.++..
T Consensus 5 ~~~rhlis~~dls~~ei~~ll~~A~~~~~ 33 (316)
T COG0540 5 FKMRHLISIEDLSREELELLLDTADEFKA 33 (316)
T ss_pred CcccceechHhCCHHHHHHHHHHHHHHHH
Confidence 356788888888875 5678888887763
No 286
>PLN02285 methionyl-tRNA formyltransferase
Probab=56.36 E-value=84 Score=23.64 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=25.8
Q ss_pred HHHHHHHhcCceEEEEEeeCCh-hHHHHHHhhhcCCcEEEEeec
Q 031168 87 IVNTVARQKQIVVVMKIFWGDP-REKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~-~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+.+.+.|+++......... .+++++..++.++|++|+...
T Consensus 59 pv~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~ 102 (334)
T PLN02285 59 PVAQLALDRGFPPDLIFTPEKAGEEDFLSALRELQPDLCITAAY 102 (334)
T ss_pred HHHHHHHHcCCCcceecCccccCCHHHHHHHHhhCCCEEEhhHh
Confidence 3556667778874432222221 345566677888999998654
No 287
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.34 E-value=60 Score=25.27 Aligned_cols=73 Identities=10% Similarity=0.173 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhh----hcCCcEEEEeec-CCCccceecccchhHHHhhcCCCcEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAID----KIPLSCLVIGNR-GLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~----~~~~dliVig~~-~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
..+++++.+....-+-+-...+..++...+-.+.|+ ..++.-+|+..- +++. |.-+-..+..+.+||.+
T Consensus 199 ~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhak------GGgAlSaVaaTksPIiF 272 (483)
T KOG0780|consen 199 ASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAK------GGGALSAVAATKSPIIF 272 (483)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCC------CCceeeehhhhCCCEEE
Confidence 445666666655544443333444444443333333 333444555432 2322 23333466678999998
Q ss_pred EcCC
Q 031168 157 VKQG 160 (164)
Q Consensus 157 v~~~ 160 (164)
+-..
T Consensus 273 IGtG 276 (483)
T KOG0780|consen 273 IGTG 276 (483)
T ss_pred EecC
Confidence 8643
No 288
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=56.18 E-value=69 Score=22.58 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHh--hcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVV--NNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~--~~~~~pVlvv~~ 159 (164)
....+.+...+...|..+... . -.++..+.+... +|+|++...-.. ...+ .+...+- .....||+++..
T Consensus 10 ~~i~~~l~~~L~~~g~~v~~~-~---~~~~a~~~~~~~-~dlviLD~~lP~-~dG~---~~~~~iR~~~~~~~PIi~Lta 80 (229)
T COG0745 10 PELAELLKEYLEEEGYEVDVA-A---DGEEALEAAREQ-PDLVLLDLMLPD-LDGL---ELCRRLRAKKGSGPPIIVLTA 80 (229)
T ss_pred HHHHHHHHHHHHHCCCEEEEE-C---CHHHHHHHHhcC-CCEEEEECCCCC-CCHH---HHHHHHHhhcCCCCcEEEEEC
Confidence 456778888888889887652 2 226666666666 999999876332 1211 2333333 346688998865
Q ss_pred CC
Q 031168 160 GI 161 (164)
Q Consensus 160 ~~ 161 (164)
..
T Consensus 81 ~~ 82 (229)
T COG0745 81 RD 82 (229)
T ss_pred CC
Confidence 43
No 289
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=56.06 E-value=31 Score=21.38 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.5
Q ss_pred cCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 119 IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 119 ~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+++.||+|+...+.+. ++.-+...+++-.|-|.+.|-
T Consensus 60 e~~E~ivvGTG~~G~l~---l~~ea~e~~r~k~~~vi~~pT 97 (121)
T COG1504 60 EGPEVIVVGTGQSGMLE---LSEEAREFFRKKGCEVIELPT 97 (121)
T ss_pred cCCcEEEEecCceeEEE---eCHHHHHHHHhcCCeEEEeCC
Confidence 57899999987655433 467788888888999988874
No 290
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=56.03 E-value=45 Score=20.39 Aligned_cols=71 Identities=17% Similarity=0.090 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCC--CcEEEE
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGS--CPVTVV 157 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~--~pVlvv 157 (164)
.-...+...+++.|.++...- ...+.+.+.+...+.++|+|.+......... .-.....+.+..+ +++++=
T Consensus 14 lg~~~~~~~l~~~G~~v~~l~-~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~~---~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 14 IGKNIVAIALRDNGFEVIDLG-VDVPPEEIVEAAKEEDADVVGLSALSTTHME---AMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred HHHHHHHHHHHHCCCEEEEcC-CCCCHHHHHHHHHHcCCCEEEEecchHhHHH---HHHHHHHHHHhcCCCCeEEEe
Confidence 345667777888888866542 2356788888888899999999776433221 1233445555554 555543
No 291
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=55.91 E-value=53 Score=24.10 Aligned_cols=48 Identities=25% Similarity=0.172 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHhcCceEEEE-EeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMK-IFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+-++...+..++.|++..-. +.+..-.+.|.++.+++++|+||+..+
T Consensus 115 ~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 115 EEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 446677777777888886554 444577899999999999999999766
No 292
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=55.82 E-value=45 Score=26.22 Aligned_cols=72 Identities=10% Similarity=-0.031 Sum_probs=42.0
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccC-----CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRN-----GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAK 79 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~-----~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
+.++|++++..+|..++..+..-.... ...+++++....-.++ ... .
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~P------------------------e~~----~ 65 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENP------------------------IVA----A 65 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccH------------------------HHH----H
Confidence 347899999999998887776543221 1245665554433221 111 1
Q ss_pred CCchHHHHHHHHHHhcCceEEEEEe
Q 031168 80 PDPETLDIVNTVARQKQIVVVMKIF 104 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (164)
..++.++.+...+.+.|+++.++++
T Consensus 66 ~v~~~l~~i~~~a~~~~lpi~~~~v 90 (447)
T TIGR03183 66 WVNASLERMQEAAQDQGLPIEPHRL 90 (447)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEec
Confidence 2245666677777777777665543
No 293
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=55.49 E-value=68 Score=22.30 Aligned_cols=79 Identities=15% Similarity=-0.002 Sum_probs=48.3
Q ss_pred hHHHHHHHHH-HhcCceEEEEEee-----------C-ChhHHHHHHhhh-cCCcEEEEeecCCCc-cceecccchhHHHh
Q 031168 83 ETLDIVNTVA-RQKQIVVVMKIFW-----------G-DPREKICEAIDK-IPLSCLVIGNRGLGK-LKRAIMGSVSNYVV 147 (164)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~-----------g-~~~~~I~~~a~~-~~~dliVig~~~~~~-~~~~~~gs~~~~l~ 147 (164)
..++.+.+.+ ...|++++...+. | =..+.|++..+. ...|.|++-..-... ...++-+-..+.+.
T Consensus 110 ~~l~~~~~~l~~~~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~~el~ 189 (204)
T PF04459_consen 110 PFLKPLVEKLNRIPGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLDDMTLEELE 189 (204)
T ss_pred HHHHHHHHHHhccCCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCccCCCCcHHHHH
Confidence 3444444444 2236666665433 2 134566655544 334899997754333 34455577888899
Q ss_pred hcCCCcEEEEcCCC
Q 031168 148 NNGSCPVTVVKQGI 161 (164)
Q Consensus 148 ~~~~~pVlvv~~~~ 161 (164)
...++||.+++...
T Consensus 190 ~~lg~~v~vv~~~~ 203 (204)
T PF04459_consen 190 ERLGVPVIVVRGPG 203 (204)
T ss_pred HHhCCcEEEeCCCC
Confidence 99999999998754
No 294
>PRK06849 hypothetical protein; Provisional
Probab=55.40 E-value=53 Score=24.98 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=24.4
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
|+..++|||--.... .++..+..+.+. |.+++++...
T Consensus 1 ~~~~~~VLI~G~~~~---~~l~iar~l~~~-G~~Vi~~d~~ 37 (389)
T PRK06849 1 MNTKKTVLITGARAP---AALELARLFHNA-GHTVILADSL 37 (389)
T ss_pred CCCCCEEEEeCCCcH---HHHHHHHHHHHC-CCEEEEEeCC
Confidence 788899998864443 356666666544 7777777544
No 295
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=55.36 E-value=83 Score=23.28 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=38.4
Q ss_pred HHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCcccee--cccchhHHHh-hcCCCcEEEEcC
Q 031168 87 IVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRA--IMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~--~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
.+...+.+.|++++... .+....++ .+ +|.+++|...-...... -.|+..-.++ ++..+||+++-+
T Consensus 157 ~~a~~L~~~gI~vtlI~--Dsa~~~~m---~~--vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~ 225 (301)
T TIGR00511 157 ITAKELRDYGIPVTLIV--DSAVRYFM---KE--VDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAE 225 (301)
T ss_pred HHHHHHHHCCCCEEEEe--hhHHHHHH---Hh--CCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcc
Confidence 34555667799888632 23333333 22 89999999753222221 2355544444 566899998843
No 296
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=55.27 E-value=61 Score=21.67 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--cCCcEEEEe
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIG 127 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliVig 127 (164)
+.....+.+.+.+.|+++.....-+|-.+.|.+..++ ..+|+||+.
T Consensus 18 d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVItt 65 (170)
T cd00885 18 DTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITT 65 (170)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 5566778888888999987766666555555544322 257988885
No 297
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=55.22 E-value=79 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=15.1
Q ss_pred CChhhHHHHHHHHhhcccC-CCEEEEEEE
Q 031168 13 FSACSKKALQWAADNVVRN-GDHLILVTV 40 (164)
Q Consensus 13 ~s~~~~~~l~~a~~la~~~-~~~l~~l~v 40 (164)
++.....+...|..++... +..|.++..
T Consensus 204 GvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 204 GVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 3334455566666666543 356666653
No 298
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=55.16 E-value=79 Score=22.94 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|+++...-..++.. ..+++.....++|-||+........ .+.... +.....||+++-.
T Consensus 14 ~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~-----~~~l~~-~~~~~iPvV~~d~ 87 (302)
T TIGR02634 14 QKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVL-----SNAVQE-AKDEGIKVVAYDR 87 (302)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHH-----HHHHHH-HHHCCCeEEEecC
Confidence 5566777777888888765543333443 3566677777899998865422111 122222 3456789888843
No 299
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=55.14 E-value=78 Score=22.91 Aligned_cols=72 Identities=7% Similarity=0.032 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHh--cCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQ--KQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
....+.+.+.+.+ .|+.+......+++. ..+++.+...++|-||+........ ..... -+...++||+++
T Consensus 15 ~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~-----~~~~~-~~~~~giPvV~~ 88 (303)
T cd01539 15 SLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAA-----QTVIN-KAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhH-----HHHHH-HHHHCCCCEEEe
Confidence 4566677777777 565554433333443 3456667777899988864321111 12223 345678899887
Q ss_pred cC
Q 031168 158 KQ 159 (164)
Q Consensus 158 ~~ 159 (164)
-.
T Consensus 89 ~~ 90 (303)
T cd01539 89 NR 90 (303)
T ss_pred CC
Confidence 43
No 300
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=55.06 E-value=89 Score=23.55 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=38.9
Q ss_pred HHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 89 NTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
...+.+.|++++.. .++....+. ...++|.+++|...-..... .-.|+..-.++ ++..+|++++-+
T Consensus 199 a~~L~~~GI~vtlI--~Dsav~~~m---~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 199 AWELVQEGIPATLI--TDSMAAHLM---KHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred HHHHHHCCCCEEEE--cccHHHHHh---cccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecc
Confidence 34455779887742 233333333 34568999999975322222 22455555555 566899998843
No 301
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=54.90 E-value=79 Score=22.92 Aligned_cols=73 Identities=15% Similarity=0.310 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCC-CcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGS-CPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~~ 159 (164)
.+..+++.+.+.+.++++....... .-...+.+.+.+.++|.||+... -+.+. .+++.+..... .|+-++|.
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GG-DGTl~-----~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGG-DGTIN-----EVVNALIQLDDIPALGILPL 91 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECC-CChHH-----HHHHHHhcCCCCCcEEEEcC
Confidence 4456667777888888877655443 13334454454556788777433 34333 34445544333 35666775
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 92 G 92 (293)
T TIGR00147 92 G 92 (293)
T ss_pred c
Confidence 3
No 302
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=54.71 E-value=47 Score=20.26 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
..++.++.+++.|.+++......+... +... ++|++.+|..-+ +.+ ...++++.....||-+++.
T Consensus 17 LV~Km~~aA~~kg~~~~I~A~s~~e~~---~~~~--~~DvvLlGPQv~-----y~~-~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 17 LVTKMKKAAESKGKDVTIEAYSETELS---EYID--NADVVLLGPQVR-----YML-KQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred HHHHHHHHHHhCCCceEEEEechhHHH---Hhhh--cCCEEEEChHHH-----HHH-HHHHHHhcccCCCeEEeCH
Confidence 557778888888888877655433322 2222 589999986521 222 3456677777789988864
No 303
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=54.64 E-value=81 Score=22.97 Aligned_cols=50 Identities=6% Similarity=0.074 Sum_probs=31.5
Q ss_pred HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC-CCcEEEEcC
Q 031168 110 EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG-SCPVTVVKQ 159 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~ 159 (164)
-+..+.|++.++|-+++..+.......--+-.--..|+..+ +.||++...
T Consensus 86 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~ 136 (288)
T cd00954 86 QELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHI 136 (288)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 44457789999999998776433222111122334577778 799998843
No 304
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=54.40 E-value=67 Score=21.89 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=17.3
Q ss_pred HHHHHHhhhcCCcEEEEeecC
Q 031168 110 EKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~~~ 130 (164)
..+..+|++++++-|++|.+.
T Consensus 101 ~~a~~~A~~~g~~~v~~G~~~ 121 (201)
T TIGR00364 101 SIAASYAEALGAEAVITGVCE 121 (201)
T ss_pred HHHHHHHHHCCCCEEEEEecc
Confidence 345688999999999999874
No 305
>PRK07627 dihydroorotase; Provisional
Probab=54.27 E-value=31 Score=26.74 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=24.0
Q ss_pred hHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 17 SKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 17 ~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
...++..++.+|+..+++++++|+....
T Consensus 211 E~~av~r~~~la~~~~~~~hi~HvSs~~ 238 (425)
T PRK07627 211 ETIALHTIFELMRVTGARVHLARLSSAA 238 (425)
T ss_pred HHHHHHHHHHHHHHHCCcEEEEeCCCHH
Confidence 3458899999999999999999998754
No 306
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.99 E-value=80 Score=22.66 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=22.8
Q ss_pred CCCceEEEEeCCChh-------------hHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 2 DGTRRVGVAVDFSAC-------------SKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~-------------~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
|+.++|..++|.... ....++.|..+....=..++++.+..
T Consensus 1 m~~~~iipaiD~~~G~~V~~~~~~~~~~~~dp~~~a~~~~~~g~~~l~i~Dl~~ 54 (258)
T PRK01033 1 MLRPRIIPCLLLKDGGLVKTVKFKDPRYIGDPINAVRIFNEKEVDELIVLDIDA 54 (258)
T ss_pred CCCcEEEEEEEEECCcEEEeecccCceeCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 347888888876543 22455555555533323565555543
No 307
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=53.95 E-value=40 Score=22.41 Aligned_cols=72 Identities=7% Similarity=0.050 Sum_probs=33.7
Q ss_pred HHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCc-ccee---cccchhHHHhhcCCCcEEEEcCCC
Q 031168 90 TVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGK-LKRA---IMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~-~~~~---~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
..++..|++.-.-....++.+.....++++++.++-++...... +... .+-...+.++....-|||+.=.++
T Consensus 26 ~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G 101 (164)
T PF03162_consen 26 PFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHG 101 (164)
T ss_dssp HHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSS
T ss_pred HHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 35666788766555555667777789999999999998764433 1111 111222345666789999875443
No 308
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=53.80 E-value=28 Score=24.78 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=11.9
Q ss_pred HHhhcCCCcEEEEcCCCC
Q 031168 145 YVVNNGSCPVTVVKQGIH 162 (164)
Q Consensus 145 ~l~~~~~~pVlvv~~~~~ 162 (164)
+.+...+||++++|...+
T Consensus 83 ~~L~~~~~p~~~vPG~~D 100 (255)
T PF14582_consen 83 RILGELGVPVFVVPGNMD 100 (255)
T ss_dssp HHHHCC-SEEEEE--TTS
T ss_pred HHHHhcCCcEEEecCCCC
Confidence 467788999999997654
No 309
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=53.73 E-value=97 Score=23.58 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=49.0
Q ss_pred HHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCcc-c---eec------------ccchhHHHhhcCCC
Q 031168 90 TVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKL-K---RAI------------MGSVSNYVVNNGSC 152 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~-~---~~~------------~gs~~~~l~~~~~~ 152 (164)
..+++.+.-+-..-... .....+++.|++.+..+|+.-+.+.... . -.. +......+..++.+
T Consensus 14 ~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~V 93 (350)
T PRK09197 14 DRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGV 93 (350)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCC
Confidence 44556676655544444 7899999999999999999876643222 1 011 34567778889999
Q ss_pred cEEEEcCCC
Q 031168 153 PVTVVKQGI 161 (164)
Q Consensus 153 pVlvv~~~~ 161 (164)
||.+-=++.
T Consensus 94 PValHLDHg 102 (350)
T PRK09197 94 PVILHTDHC 102 (350)
T ss_pred CEEEECCCC
Confidence 988765544
No 310
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=53.72 E-value=26 Score=27.19 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=8.9
Q ss_pred HHHhhcccCCCEEEEEEE
Q 031168 23 WAADNVVRNGDHLILVTV 40 (164)
Q Consensus 23 ~a~~la~~~~~~l~~l~v 40 (164)
-|...+.....-+.++|-
T Consensus 14 GA~~~~~~I~~~~~i~Hg 31 (426)
T cd01972 14 TAFCILSGIRDAVVVQHG 31 (426)
T ss_pred HHHHHHhccCCeEEEEeC
Confidence 334444444455666663
No 311
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=53.67 E-value=26 Score=27.19 Aligned_cols=50 Identities=6% Similarity=0.110 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEe------eCChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIF------WGDPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
+++.+.+.+..+...-+.-..+. -|+-.+.+++.+++.++.++.+...+-
T Consensus 72 ~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v~~~~~~~~~~vi~v~t~gf 127 (427)
T cd01971 72 DRLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEFQEGGAPIVYLETGGF 127 (427)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHHHHHhhhcCCCEEEEECCCc
Confidence 45556666655544433222221 165566666666667778888876653
No 312
>PRK09875 putative hydrolase; Provisional
Probab=53.53 E-value=48 Score=24.40 Aligned_cols=50 Identities=8% Similarity=0.021 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCC--cEEEEeecCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPL--SCLVIGNRGL 131 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~--dliVig~~~~ 131 (164)
++.++.......+-|.++.+|.-.|+...++++..++.++ +-||+|....
T Consensus 138 ~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d~ 189 (292)
T PRK09875 138 EKVFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDL 189 (292)
T ss_pred HHHHHHHHHHHHHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCCC
Confidence 4555665555666789988887677677777888888888 8899998753
No 313
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=53.35 E-value=46 Score=21.79 Aligned_cols=73 Identities=15% Similarity=0.096 Sum_probs=42.9
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEee--CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
...++..+.+++.+.+.|++++..-.. |...+.|-+... ++|-||+.....+..+ --....+....+|++=
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~--~~dgiiINpga~THtS-----iAl~DAl~~~~~P~VE 98 (146)
T PRK05395 26 TTLADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARD--GADGIIINPGAYTHTS-----VALRDALAAVSIPVIE 98 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccc--CCcEEEECchHHHHHH-----HHHHHHHHcCCCCEEE
Confidence 445667777788777778876654332 344444444322 5899999765443211 1123456667888875
Q ss_pred Ec
Q 031168 157 VK 158 (164)
Q Consensus 157 v~ 158 (164)
|.
T Consensus 99 VH 100 (146)
T PRK05395 99 VH 100 (146)
T ss_pred Ee
Confidence 53
No 314
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=53.27 E-value=58 Score=20.89 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=26.9
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEE
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v 40 (164)
...+||++.-..+...-.+.....+++..|.+++-+-.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~ 39 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV 39 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC
Confidence 34567887777777777777777777777877766644
No 315
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=53.21 E-value=31 Score=25.09 Aligned_cols=44 Identities=9% Similarity=0.103 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCceEEEEEeeC----ChhHHHHHHhhhcCCcEEEEeec
Q 031168 86 DIVNTVARQKQIVVVMKIFWG----DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g----~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..++......|+++...-... .....+++..+++++|+||+.+.
T Consensus 128 ~dl~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARY 175 (287)
T COG0788 128 DDLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARY 175 (287)
T ss_pred HHHHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhh
Confidence 355566666777766554433 23567889999999999999875
No 316
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=53.07 E-value=58 Score=27.79 Aligned_cols=87 Identities=15% Similarity=0.072 Sum_probs=59.5
Q ss_pred eEEEEe-CCChhhHHHHHHHHh-hccc----CCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCC
Q 031168 6 RVGVAV-DFSACSKKALQWAAD-NVVR----NGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAK 79 (164)
Q Consensus 6 ~ILv~~-d~s~~~~~~l~~a~~-la~~----~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
++|+.. .++....+|+-.++. +.+. ....++++||.+-. .
T Consensus 39 nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk----------------------------------A 84 (814)
T COG1201 39 NVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK----------------------------------A 84 (814)
T ss_pred ceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH----------------------------------H
Confidence 444433 355555555554443 3333 23459999998755 3
Q ss_pred CCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEee
Q 031168 80 PDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~ 128 (164)
..+.++..+....+..|+++ .++.||..+.=-+.-....+|+++...
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v--~vRhGDT~~~er~r~~~~PPdILiTTP 131 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEV--AVRHGDTPQSEKQKMLKNPPHILITTP 131 (814)
T ss_pred HHHHHHHHHHHHHHHcCCcc--ceecCCCChHHhhhccCCCCcEEEeCh
Confidence 44778888998888889988 688998888877777777888888753
No 317
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=53.07 E-value=35 Score=26.12 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=11.8
Q ss_pred CChhHHHHHHh-hhcCCcEEEEeecC
Q 031168 106 GDPREKICEAI-DKIPLSCLVIGNRG 130 (164)
Q Consensus 106 g~~~~~I~~~a-~~~~~dliVig~~~ 130 (164)
|+-.+.+++.+ ++.++.+|.+...+
T Consensus 103 GdDi~~v~~~~~~~~~~~vi~v~t~g 128 (406)
T cd01967 103 GDDIEAVAKEASKELGIPVIPVNCEG 128 (406)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCC
Confidence 43344444433 23455666665543
No 318
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=52.81 E-value=95 Score=23.21 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhcCceEEEEEee-C--ChhHHHHHHhhhcCCcEEE-EeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW-G--DPREKICEAIDKIPLSCLV-IGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g--~~~~~I~~~a~~~~~dliV-ig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
...+.+...+.+.+ .+...+.. + +..+.+.+.+++.++|.|| +|...- .+++..+.....+|++.||
T Consensus 39 ~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~--------~D~aK~~a~~~~~p~i~iP 109 (339)
T cd08173 39 IAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGGGRV--------IDVAKVAAYKLGIPFISVP 109 (339)
T ss_pred HHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCCchH--------HHHHHHHHHhcCCCEEEec
Confidence 35667777777667 55443322 2 2356677788888899887 553311 3445555555578988888
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
-
T Consensus 110 T 110 (339)
T cd08173 110 T 110 (339)
T ss_pred C
Confidence 4
No 319
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=52.59 E-value=68 Score=21.46 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhc--CCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKI--PLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~--~~dliVig~~ 129 (164)
.+.++.+.+.....++-+-..+...+-++.|....+.. ++|.+|+-.+
T Consensus 45 ~~~~~~~~~aia~ADii~~smlF~ed~v~~l~~~L~~~r~~~~a~i~~~s 94 (164)
T PF11965_consen 45 PEALEECEAAIARADIIFGSMLFIEDHVRPLLPALEARRDHCPAMIIFES 94 (164)
T ss_pred hHHHHHHHHHHHhCCEEEeehhhhHHHHHHHHHHHHHHHccCCEEEEEcC
Confidence 44667777777777777766666666677777665544 5676666443
No 320
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=52.59 E-value=27 Score=27.37 Aligned_cols=12 Identities=25% Similarity=0.039 Sum_probs=6.9
Q ss_pred ccCCCEEEEEEE
Q 031168 29 VRNGDHLILVTV 40 (164)
Q Consensus 29 ~~~~~~l~~l~v 40 (164)
..-..-++++|-
T Consensus 55 ~~I~d~~~lvHG 66 (456)
T TIGR01283 55 LPITDAAHLVHG 66 (456)
T ss_pred HccCCEEEEEeC
Confidence 334556777773
No 321
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.51 E-value=82 Score=26.76 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCcccee
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRA 137 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~ 137 (164)
..+.++.+.+..|+++.......+.. ..++.. .+.|+|+|.+.+++.....
T Consensus 230 A~eQL~~~a~~~gvpv~~~~~~~~l~-~al~~~--~~~D~VLIDTAGRs~~d~~ 280 (767)
T PRK14723 230 ALEQLRIYGRILGVPVHAVKDAADLR-FALAAL--GDKHLVLIDTVGMSQRDRN 280 (767)
T ss_pred HHHHHHHHHHhCCCCccccCCHHHHH-HHHHHh--cCCCEEEEeCCCCCccCHH
Confidence 46777888887788664321111222 222222 3569999999887764433
No 322
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=52.48 E-value=37 Score=19.91 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCceEEEEEeeCC-hhHHHHHHhhhcCCcEEEEeecC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliVig~~~ 130 (164)
.+.+++.+++.|+.+.++..... +...+-. -.-..+|+|++....
T Consensus 3 AeaL~~aA~~~G~~i~VEtqg~~g~~~~lt~-~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 3 AEALESAAKAKGWEVKVETQGSIGLENELTA-EDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHHCCCeEEEEecCCcCcCCCCCH-HHHHhCCEEEEEecC
Confidence 35667777888888777665542 2222221 122236888887654
No 323
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=52.48 E-value=96 Score=23.15 Aligned_cols=43 Identities=23% Similarity=0.161 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+-+..++.|..+.. +-.||+...|.-.....++|+++ |..
T Consensus 166 H~~lI~eiR~~Gari~L-i~DGDVa~ai~~~~~~s~vD~~~-GiG 208 (321)
T TIGR00330 166 HDAVIAEMQQLGVRVFA-IPDGDVAASILTCMPDSEVDVLY-GIG 208 (321)
T ss_pred HHHHHHHHHHcCCeEEE-eccccHHHHHHHhCCCCCeeEEE-EcC
Confidence 34444556677888775 66789999998888888888764 444
No 324
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=52.44 E-value=89 Score=22.75 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.-++.+.+.....|+.+-+++..-.-.+.+ .+. +|++-+|++.-.. ..-...+.++++||.+=++
T Consensus 75 ~~L~~l~~v~~~~glpv~tEv~~~~~~~~~----~d~-vd~lqIgAr~~~n-------~~ll~~as~~~~pV~~K~g 139 (270)
T PF00793_consen 75 PGLDILSEVKEGLGLPVATEVLDPEQAEYV----ADL-VDWLQIGARLMEN-------QDLLEAASGTGKPVGFKNG 139 (270)
T ss_dssp HHHHHHHHHHHHHT-EEEEEESSGGGHHHH----HTT-ESEEEE-GGGTTC-------HHHHHHHHCTSSEEEEEE-
T ss_pred ccchhHHHHHhhhCCeeeEEecCcccHHHH----Hhc-CcEEEECcchhcC-------HHHHHHhccCCCeEEeccC
Confidence 346777777777799999888776555544 333 6999999884332 1223456678999987554
No 325
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=52.41 E-value=1e+02 Score=23.37 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhcCceEEEEEee-----------C-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW-----------G-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNG 150 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-----------g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~ 150 (164)
..++.+...++..|+++...+.. | .-.++|.+.++..++|+||+... .+ ++-...+-...
T Consensus 17 ~~~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~-l~-------p~q~~nl~~~~ 88 (351)
T TIGR03156 17 ESLEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHE-LS-------PSQERNLEKAL 88 (351)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCC-CC-------HHHHHHHHHHh
Confidence 56888899998888875443221 4 56789999999999999999743 33 23334444445
Q ss_pred CCcEE
Q 031168 151 SCPVT 155 (164)
Q Consensus 151 ~~pVl 155 (164)
.|+|+
T Consensus 89 ~~~v~ 93 (351)
T TIGR03156 89 GCRVI 93 (351)
T ss_pred CCccc
Confidence 56554
No 326
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=52.16 E-value=98 Score=23.15 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+-+..++.|..+.. +-.||+...|.-.....++|+++ |..
T Consensus 166 H~~lI~eiR~~GarI~L-i~DGDVa~ai~~~~~~s~vD~~~-GiG 208 (321)
T PRK12388 166 LSAAIEEATQLGVKVFA-LPDGDVAASVLTCWQDNPYDVMY-TIG 208 (321)
T ss_pred HHHHHHHHHHcCCeEEE-eccccHHHHHHHhCCCCCeeEEE-EcC
Confidence 34444556677888775 66789999998888888888764 444
No 327
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=52.12 E-value=64 Score=23.93 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=34.3
Q ss_pred eCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 105 WGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 105 ~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
++..+..++..|...+-++-|+-.-++..+. |+..-+-+++..+|+.++++.
T Consensus 128 ~S~~v~~~l~~A~~~~k~~~V~VtESRP~~e----G~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 128 FSKTVLEVLKTAADRGKRFKVIVTESRPRGE----GRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred CcHHHHHHHHHhhhcCCceEEEEEcCCCcch----HHHHHHHHHHcCCceEEEech
Confidence 3466777777777765544444444334444 777788888888999888753
No 328
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.06 E-value=73 Score=22.67 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|.++......++.. ..+++.....++|-||+-........ +.. ..+....+||+++-.
T Consensus 16 ~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~-----~~~-~~~~~~~iPvV~~d~ 89 (280)
T cd06315 16 LGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQ-----AEL-ELAQKAGIPVVGWHA 89 (280)
T ss_pred HHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH-----HHH-HHHHHCCCCEEEecC
Confidence 5677788888888887765543333443 35777788889999999543211101 111 334567899998843
No 329
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=52.01 E-value=80 Score=22.11 Aligned_cols=72 Identities=8% Similarity=0.035 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHh-cCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQ-KQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+.+++ .|+.+......+++. ...++.....++|-+|+......... ... ..+.+.+.|++++-
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~~-~~l~~~~iPvv~~~ 88 (272)
T cd06301 15 TLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATA-----PIV-KAANAAGIPLVYVN 88 (272)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhH-----HHH-HHHHHCCCeEEEec
Confidence 4566667777777 677766543334443 33445555668999998654322111 112 23467789998885
Q ss_pred C
Q 031168 159 Q 159 (164)
Q Consensus 159 ~ 159 (164)
.
T Consensus 89 ~ 89 (272)
T cd06301 89 R 89 (272)
T ss_pred C
Confidence 4
No 330
>PF13362 Toprim_3: Toprim domain
Probab=51.91 E-value=48 Score=19.47 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=27.4
Q ss_pred CCceEEEEeCCChh--hHHHHHHHHhhcccCCCEEEEEEE
Q 031168 3 GTRRVGVAVDFSAC--SKKALQWAADNVVRNGDHLILVTV 40 (164)
Q Consensus 3 ~~~~ILv~~d~s~~--~~~~l~~a~~la~~~~~~l~~l~v 40 (164)
..++|+++.|.... ...+...+...+...+..+.++..
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 46789999998887 677777776666666666665543
No 331
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=51.81 E-value=65 Score=20.97 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=24.4
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecC
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPE 43 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~ 43 (164)
+|+|.+++..+|..++..+.+..... .++|+...
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg 34 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTG 34 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-S
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecC
Confidence 57899999999999999888887663 56666543
No 332
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.81 E-value=1.1e+02 Score=23.42 Aligned_cols=66 Identities=15% Similarity=0.300 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
++-++.+++.+++.|+.+-+.+..-.-.+.+.++ +|++=+|++.-..+. ... -+.++..||++=+.
T Consensus 151 ~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-----~d~lqIga~~~~n~~------LL~-~va~t~kPVllk~G 216 (352)
T PRK13396 151 ESALELLAAAREATGLGIITEVMDAADLEKIAEV-----ADVIQVGARNMQNFS------LLK-KVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-----CCeEEECcccccCHH------HHH-HHHccCCeEEEeCC
Confidence 6678888888889999988877665555555443 688888887544322 122 22345777776544
No 333
>PRK06455 riboflavin synthase; Provisional
Probab=51.75 E-value=68 Score=21.24 Aligned_cols=75 Identities=11% Similarity=-0.018 Sum_probs=48.0
Q ss_pred HHHHHHHHHHh--cCceEEEEEeeC--ChhHHHHHHhhhcCCcEEE-EeecCCCccceecccchhHHHhh---cCCCcEE
Q 031168 84 TLDIVNTVARQ--KQIVVVMKIFWG--DPREKICEAIDKIPLSCLV-IGNRGLGKLKRAIMGSVSNYVVN---NGSCPVT 155 (164)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~~~~~~g--~~~~~I~~~a~~~~~dliV-ig~~~~~~~~~~~~gs~~~~l~~---~~~~pVl 155 (164)
..+-..+.+++ .+.++....+-| +..-.+.+.++..++|.|| +|.-+.+...++.-..++.-|.+ ....||.
T Consensus 16 L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi 95 (155)
T PRK06455 16 MGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAHEASIGLIMAQLMTNKHII 95 (155)
T ss_pred HHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHHHHHHHHHHHHhhhCCCEE
Confidence 44555555555 446676666778 5556666777777788766 47766666556665566665554 5579987
Q ss_pred EEc
Q 031168 156 VVK 158 (164)
Q Consensus 156 vv~ 158 (164)
-|-
T Consensus 96 ~v~ 98 (155)
T PRK06455 96 EVF 98 (155)
T ss_pred EEE
Confidence 664
No 334
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=51.70 E-value=39 Score=26.05 Aligned_cols=25 Identities=20% Similarity=0.557 Sum_probs=12.0
Q ss_pred CChhHHHHHHhh-hcCCcEEEEeecC
Q 031168 106 GDPREKICEAID-KIPLSCLVIGNRG 130 (164)
Q Consensus 106 g~~~~~I~~~a~-~~~~dliVig~~~ 130 (164)
|+-.+.+++.++ +.++.++.+...+
T Consensus 102 GdDi~~v~~~~~~~~~~~vi~v~t~g 127 (410)
T cd01968 102 GDDIDAVCKTASEKFGIPVIPVHSPG 127 (410)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEECCC
Confidence 444444444433 3455566555443
No 335
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=51.58 E-value=74 Score=23.47 Aligned_cols=73 Identities=15% Similarity=0.085 Sum_probs=47.5
Q ss_pred HHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCcc-c-eecccchhHHHhhcC--CCcEEEEcCC
Q 031168 88 VNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKL-K-RAIMGSVSNYVVNNG--SCPVTVVKQG 160 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~-~-~~~~gs~~~~l~~~~--~~pVlvv~~~ 160 (164)
+-+.+++.+.-+-..-... .....+++.|++.+..+|+.-+.+.... . -..+......+..+. ..||.+-=++
T Consensus 9 ~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH 86 (293)
T PRK07315 9 FVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDH 86 (293)
T ss_pred HHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 3344555566555444444 7789999999999999999876654322 1 123456677788777 6688775444
No 336
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=51.52 E-value=21 Score=26.18 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=47.5
Q ss_pred HHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccc-eecccchhHHHhhcCCCcEEEE
Q 031168 87 IVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLK-RAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~-~~~~gs~~~~l~~~~~~pVlvv 157 (164)
.+-+.+++.+.-+-..-..+ .....+++.|++.+..+|+.-..+..... --.+......+.+++.+||.+-
T Consensus 7 ~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValH 79 (287)
T PF01116_consen 7 ELLKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALH 79 (287)
T ss_dssp HHHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEee
Confidence 33444555566655544444 78999999999999999888776433222 2245678888999999999764
No 337
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=51.51 E-value=94 Score=22.86 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=49.1
Q ss_pred HHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccc-eecccchhHHHhhcCCCcEEEEcCCC
Q 031168 89 NTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLK-RAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~-~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
...+.+.+.-+-..-... .....+++.|++.+..+|+-...+.-... ...+......+..++.+||.+-=++.
T Consensus 10 l~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~ 84 (283)
T PRK07998 10 LDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHG 84 (283)
T ss_pred HHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCC
Confidence 344555566555444444 67899999999999999998766432221 12345677778889999998765443
No 338
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=51.49 E-value=98 Score=23.23 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCceEEEE-EeeCCh----hHHHHHHhhhcCCcEEE-EeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 84 TLDIVNTVARQKQIVVVMK-IFWGDP----REKICEAIDKIPLSCLV-IGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~g~~----~~~I~~~a~~~~~dliV-ig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
..+++.+.+++.++.+... ...+++ .+.+.+.+++.++|.|| +|...- -+++..+.....+|++.|
T Consensus 37 ~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~--------~D~aK~ia~~~~~p~i~V 108 (345)
T cd08171 37 AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKA--------IDTVKVLADKLGKPVFTF 108 (345)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH--------HHHHHHHHHHcCCCEEEe
Confidence 4666777777778876533 233433 45667778888999988 553311 133444444447898888
Q ss_pred cC
Q 031168 158 KQ 159 (164)
Q Consensus 158 ~~ 159 (164)
|-
T Consensus 109 PT 110 (345)
T cd08171 109 PT 110 (345)
T ss_pred cC
Confidence 84
No 339
>PRK00766 hypothetical protein; Provisional
Probab=51.45 E-value=68 Score=22.12 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=37.3
Q ss_pred CceEEEEEeeC-ChhHHHHHHhhh----cCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 96 QIVVVMKIFWG-DPREKICEAIDK----IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 96 ~~~~~~~~~~g-~~~~~I~~~a~~----~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
|+-+....+.| |..+.|+++... .+..+|++..-.-+++.-. ....|-..+..||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNvv----D~~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNVV----DIEELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEEe----cHHHHHHHHCCCEEEE
Confidence 45556656667 888888888775 2444666654434433311 3456778889999988
No 340
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=51.41 E-value=54 Score=23.28 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceec
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAI 138 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~ 138 (164)
...+.+++.+++.|+++...-...+ ..+.. .++|.|+++......+.+.+
T Consensus 48 ~y~~~~~~af~~lG~~v~~l~~~~d----~~~~l--~~ad~I~v~GGnt~~l~~~l 97 (233)
T PRK05282 48 DYTAKVAEALAPLGIEVTGIHRVAD----PVAAI--ENAEAIFVGGGNTFQLLKQL 97 (233)
T ss_pred HHHHHHHHHHHHCCCEEEEeccchh----hHHHH--hcCCEEEECCccHHHHHHHH
Confidence 3455677777778887554322222 22323 34788888765443333333
No 341
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=51.39 E-value=96 Score=22.84 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=48.6
Q ss_pred HHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCc-cceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 90 TVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGK-LKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~-~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
..+++.+.-+-..-..+ ....++++.|++.+..+|+..+.+.-. .....+......+..++.+||.+-=++.
T Consensus 11 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg 84 (286)
T PRK12738 11 QDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHH 84 (286)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33555566554444444 789999999999999999976554321 1222345677888889999998765544
No 342
>PRK11058 GTPase HflX; Provisional
Probab=51.34 E-value=1.1e+02 Score=23.95 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEee-----------C-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW-----------G-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN 149 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-----------g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~ 149 (164)
.+.++.+...++..|+++...+.. | .-.++|.+.++..++|+||+... .+ ++-..+|-..
T Consensus 24 ~~~~~El~~L~~~~g~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~-ls-------p~q~~nle~~ 95 (426)
T PRK11058 24 MEDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHA-LS-------PAQERNLERL 95 (426)
T ss_pred hhhHHHHHHHHHHCCCEEEEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCC-CC-------HHHHHHHHHH
Confidence 356889999999888875443321 4 56789999999999999999754 33 2333344444
Q ss_pred CCCcEE
Q 031168 150 GSCPVT 155 (164)
Q Consensus 150 ~~~pVl 155 (164)
..|+|+
T Consensus 96 ~~~~v~ 101 (426)
T PRK11058 96 CECRVI 101 (426)
T ss_pred HCCeEe
Confidence 455554
No 343
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=51.30 E-value=65 Score=20.88 Aligned_cols=105 Identities=10% Similarity=0.052 Sum_probs=60.7
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccC-CCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRN-GDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAK 79 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~-~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
|..+++|++.++..+. ..+++++..+.... |.+|. ..+.
T Consensus 1 ~~~~~~v~lsv~d~dK-~~l~~~a~~l~~ll~Gf~l~---AT~g------------------------------------ 40 (142)
T PRK05234 1 MPARKRIALIAHDHKK-DDLVAWVKAHKDLLEQHELY---ATGT------------------------------------ 40 (142)
T ss_pred CCcCcEEEEEEeccch-HHHHHHHHHHHHHhcCCEEE---EeCh------------------------------------
Confidence 4566788888877664 44778888877653 43432 1111
Q ss_pred CCchHHHHHHHHHHhc-CceEEEEEeeCC--hhHHHHHHhhhcCCcEEEEee--cCCCccceecccchhHHHhhcCCCcE
Q 031168 80 PDPETLDIVNTVARQK-QIVVVMKIFWGD--PREKICEAIDKIPLSCLVIGN--RGLGKLKRAIMGSVSNYVVNNGSCPV 154 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~--~~~~I~~~a~~~~~dliVig~--~~~~~~~~~~~gs~~~~l~~~~~~pV 154 (164)
..+++++. |++++.. ..+. -...|.+..+..++|+||--. .++... .-.|....+.+-...+|+
T Consensus 41 --------Ta~~L~~~~Gi~v~~v-i~~~~gg~~~i~~~I~~g~i~lVInt~dp~~~~~~--~~D~~~IRR~Av~~~IP~ 109 (142)
T PRK05234 41 --------TGGLIQEATGLDVTRL-LSGPLGGDQQIGALIAEGKIDMLIFFRDPLTAQPH--DPDVKALLRLADVWNIPV 109 (142)
T ss_pred --------HHHHHHhccCCeeEEE-EcCCCCCchhHHHHHHcCceeEEEEecCCCCCCcc--cchHHHHHHHHHHcCCCE
Confidence 12334455 8888765 3331 136799999999999998865 322221 112334444444456776
Q ss_pred EE
Q 031168 155 TV 156 (164)
Q Consensus 155 lv 156 (164)
+.
T Consensus 110 ~T 111 (142)
T PRK05234 110 AT 111 (142)
T ss_pred Ec
Confidence 53
No 344
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.24 E-value=67 Score=20.98 Aligned_cols=70 Identities=7% Similarity=0.087 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
.-..-+...+++.|+++..--.. +..+++++.|-++++|.|++....-.. . -++-.+.+.+-..-.-+++
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h-~-~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGH-L-TLVPGLVEALREAGVEDIL 96 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchH-H-HHHHHHHHHHHHhCCcceE
Confidence 34455667777888886543333 455888899988889999997763222 2 2334566666555555555
No 345
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=51.14 E-value=31 Score=22.92 Aligned_cols=48 Identities=8% Similarity=-0.037 Sum_probs=26.6
Q ss_pred hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 109 REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
+-..++.+-..++||+|+++-++.-....-+.+.... .-...+|||+.
T Consensus 82 A~~~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~-A~~~giPVLt~ 129 (159)
T PF10649_consen 82 ASAALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAA-ALAAGIPVLTA 129 (159)
T ss_pred HHHHHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHH-HHHCCCCEEEE
Confidence 3445566667779999998875543332211122221 12347888865
No 346
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=51.08 E-value=96 Score=22.72 Aligned_cols=72 Identities=15% Similarity=0.084 Sum_probs=47.6
Q ss_pred HHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCcc-c-eecccchhHHHhhcCC-CcEEEEcCCC
Q 031168 90 TVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKL-K-RAIMGSVSNYVVNNGS-CPVTVVKQGI 161 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~-~-~~~~gs~~~~l~~~~~-~pVlvv~~~~ 161 (164)
+.+.+.+.-+-..-... .....+++.|++.+..+|+.-+.+.... . -..+......+..++. +||.+--++.
T Consensus 9 ~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~ 84 (282)
T TIGR01859 9 QKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHG 84 (282)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 34555566554444444 7799999999999999999876643322 1 1224566777888888 8988765443
No 347
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=50.92 E-value=64 Score=21.14 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=43.1
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEee--CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
...+++.+.+++.+.+.|++++..-.. |...+.|-+.. .++|-||+.....+..+ --....+....+|++=
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~--~~~dgiIINpga~THtS-----iAl~DAl~~~~~P~VE 98 (146)
T PRK13015 26 ETLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEAR--GDVAGIVINPGAYTHTS-----VAIRDALAALELPVIE 98 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh--hcCCEEEEcchHHhhhH-----HHHHHHHHcCCCCEEE
Confidence 345667778888887778876654322 34445444432 24799999765443211 1223456667888875
Q ss_pred Ec
Q 031168 157 VK 158 (164)
Q Consensus 157 v~ 158 (164)
|.
T Consensus 99 VH 100 (146)
T PRK13015 99 VH 100 (146)
T ss_pred EE
Confidence 53
No 348
>PHA02546 47 endonuclease subunit; Provisional
Probab=50.83 E-value=27 Score=26.17 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhcCc
Q 031168 84 TLDIVNTVARQKQI 97 (164)
Q Consensus 84 ~~~~~~~~~~~~~~ 97 (164)
.++++.+.+.+.++
T Consensus 27 ~l~~ii~~a~~~~v 40 (340)
T PHA02546 27 FIKQAIEYSKAHGI 40 (340)
T ss_pred HHHHHHHHHHHcCC
Confidence 44444444444443
No 349
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=50.72 E-value=65 Score=25.25 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=26.9
Q ss_pred ceEEEEEeeCChhHHHHH--HhhhcCCcEEEEeec-CCCccceecccch
Q 031168 97 IVVVMKIFWGDPREKICE--AIDKIPLSCLVIGNR-GLGKLKRAIMGSV 142 (164)
Q Consensus 97 ~~~~~~~~~g~~~~~I~~--~a~~~~~dliVig~~-~~~~~~~~~~gs~ 142 (164)
--+.+.+..|+..+.|.+ .|..+++|.|.+-+. +.|.+.-...|.+
T Consensus 147 P~iy~iVAtG~iyeDi~qaraAA~~GAD~IaVIRttgQSllDyvp~GaT 195 (509)
T PF09043_consen 147 PVIYVIVATGNIYEDIRQARAAARQGADIIAVIRTTGQSLLDYVPEGAT 195 (509)
T ss_dssp SEEEEEE-SS-HHHHHHHHHHHHHTT-SEEEE-BSTTGGG-SS-B-S--
T ss_pred CeEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhccccCCCC
Confidence 346677888999999986 488899999987654 4555554444533
No 350
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=50.68 E-value=64 Score=20.61 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--cCCcEEEEee
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGN 128 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliVig~ 128 (164)
.+..-..+.+.+++.|+++.....-.|-.+.|.+.... .++|+||+-.
T Consensus 15 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittG 64 (144)
T PF00994_consen 15 RDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTG 64 (144)
T ss_dssp EBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEES
T ss_pred EEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcC
Confidence 45566778888888999877654444444444433221 2359988843
No 351
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=50.65 E-value=64 Score=23.97 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=30.9
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCC--CccceecccchhHHHhhcCCCcEEEEcC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGL--GKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~--~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+..+.++...+ +|+||+|.... |-...+.+..+.+.| ++.||+.|-+
T Consensus 175 a~p~vl~AI~~--AD~IiiGPgnp~TSI~P~L~v~gi~eAL---~~a~vV~Vsp 223 (303)
T PRK13606 175 PAPGVLEAIEE--ADAVIIGPSNPVTSIGPILAVPGIREAL---TEAPVVAVSP 223 (303)
T ss_pred CCHHHHHHHHh--CCEEEECCCccHHhhchhccchhHHHHH---hCCCEEEEcC
Confidence 56677777766 69999997632 223334456666666 7888886643
No 352
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=50.48 E-value=22 Score=23.91 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcccCCCEEEEEEEec--CCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhc
Q 031168 18 KKALQWAADNVVRNGDHLILVTVVP--EGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQK 95 (164)
Q Consensus 18 ~~~l~~a~~la~~~~~~l~~l~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
..-+..++.+|+..+++...+|... ... .... ........+.++.+.+.+.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~--------------------~~~~-----~~~~~~~~~~l~~l~~~a~~~ 124 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGP--------------------EDDT-----EENWERLAENLRELAEIAEEY 124 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSST--------------------TSSH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCccccccc--------------------CCCH-----HHHHHHHHHHHHHHHhhhhhh
Confidence 5678888899999999988888551 111 0000 011123355777777778888
Q ss_pred CceEEEEEeeCCh---h---HHHHHHhhhcCCc
Q 031168 96 QIVVVMKIFWGDP---R---EKICEAIDKIPLS 122 (164)
Q Consensus 96 ~~~~~~~~~~g~~---~---~~I~~~a~~~~~d 122 (164)
|+.+-.+...+.. . +.+.+..+..+.+
T Consensus 125 gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 125 GVRIALENHPGPFSETPFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp TSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTT
T ss_pred cceEEEecccCccccchhhHHHHHHHHhhcCCC
Confidence 9887777655432 2 7888888876644
No 353
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=50.47 E-value=86 Score=21.99 Aligned_cols=24 Identities=21% Similarity=-0.067 Sum_probs=17.9
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcc
Q 031168 6 RVGVAVDFSACSKKALQWAADNVV 29 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~ 29 (164)
.++++-.++..+.-+++.|..+|.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~ 27 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhc
Confidence 356666677778888999888774
No 354
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=50.42 E-value=28 Score=27.84 Aligned_cols=17 Identities=0% Similarity=-0.197 Sum_probs=8.7
Q ss_pred hhcccCCCEEEEEEEec
Q 031168 26 DNVVRNGDHLILVTVVP 42 (164)
Q Consensus 26 ~la~~~~~~l~~l~v~~ 42 (164)
+.+.....-+.++|.-.
T Consensus 18 ~~a~~i~~~~~i~H~p~ 34 (513)
T CHL00076 18 RVASSFKNVHAIMHAPL 34 (513)
T ss_pred HHHHhcCCcEEEeeCCC
Confidence 33434445566666544
No 355
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=50.37 E-value=39 Score=23.75 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=28.9
Q ss_pred hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCC-CcEEEEcCCC
Q 031168 109 REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGS-CPVTVVKQGI 161 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~~~~ 161 (164)
.+.+.+.+.+.+.|.|++|...--. ..+..+...+-+... .||++.|.+.
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v~---~~~~~~~~~ik~~~~~~Pvilfp~~~ 64 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGVS---STLDNVVRLIKRIRRPVPVILFPSNP 64 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccchh---hhHHHHHHHHHHhcCCCCEEEeCCCc
Confidence 4556677777788999998763111 111223332323333 8999888754
No 356
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=50.36 E-value=40 Score=18.97 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=25.2
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
-+.+++.++.+..+...++ +++.++..++++..+.
T Consensus 47 ~~d~~i~iS~sg~t~~~~~-~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYSGRTEELLA-ALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCCCCHHHHH-HHHHHHHcCCeEEEEe
Confidence 4578889988888776655 5566667788776654
No 357
>COG2262 HflX GTPases [General function prediction only]
Probab=50.21 E-value=1.2e+02 Score=23.62 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=38.0
Q ss_pred CchHHHHHHHHHHhcCceEEEEEee-----------C-ChhHHHHHHhhhcCCcEEEEeec
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFW-----------G-DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------g-~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+..++.+...+...|.++--.+.. | .-.++|...++..++|+||+...
T Consensus 18 ~~~~leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~~~ad~VIf~~~ 78 (411)
T COG2262 18 FEESLEELAELAETAGYEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEETGADLVIFDHE 78 (411)
T ss_pred chhhHHHHHHHHHHcCCeEeeeEEEeccCCCcceecCcchHHHHHHHHHhcCCCEEEECCc
Confidence 3668888999998888875333221 4 56899999999999999999865
No 358
>PRK03670 competence damage-inducible protein A; Provisional
Probab=50.14 E-value=72 Score=22.95 Aligned_cols=46 Identities=20% Similarity=0.096 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh---cCCcEEEEe
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK---IPLSCLVIG 127 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~---~~~dliVig 127 (164)
+.....+.+.+.+.|+++.....-+|-.+.|.+..+. ..+|+||+.
T Consensus 19 dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVItt 67 (252)
T PRK03670 19 DSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVIS 67 (252)
T ss_pred ehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEEC
Confidence 5566678888888999988776667766666665433 246888885
No 359
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=50.12 E-value=33 Score=23.25 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=26.2
Q ss_pred eEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEE
Q 031168 6 RVGVAVDFSACSKKALQWAADNVVRNGDHLILVT 39 (164)
Q Consensus 6 ~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~ 39 (164)
||++++.++-.+..+.+....|.+ .+.+|+++-
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~-~g~~V~vv~ 33 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKE-AGVEVHLVI 33 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 689999999999999999888854 466766553
No 360
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=49.83 E-value=1.2e+02 Score=23.61 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEee
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~ 128 (164)
..+++...+...+......+..+.-..++.+.++..++|+++=++
T Consensus 341 ~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s 385 (435)
T cd01974 341 FEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNT 385 (435)
T ss_pred HHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEEEECc
Confidence 344555555542222223344454567777777888899865443
No 361
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=49.78 E-value=1.2e+02 Score=23.31 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=56.3
Q ss_pred hhHHHHHHHHhhcccCC-CEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHh
Q 031168 16 CSKKALQWAADNVVRNG-DHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQ 94 (164)
Q Consensus 16 ~~~~~l~~a~~la~~~~-~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
..++++..+-++..++| .++.++--...-+ .+.-+.+++.+.+
T Consensus 117 PNQ~~~pl~~~~~~~~G~~r~~lvGSdYv~p------------------------------------re~Nri~r~~l~~ 160 (363)
T PF13433_consen 117 PNQQLLPLIDYLLENFGAKRFYLVGSDYVYP------------------------------------RESNRIIRDLLEA 160 (363)
T ss_dssp GGGTHHHHHHHHHHHS--SEEEEEEESSHHH------------------------------------HHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhccCCceEEEecCCccch------------------------------------HHHHHHHHHHHHH
Confidence 34556666666677777 7787775433111 3455666677777
Q ss_pred cCceEEEE--EeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 95 KQIVVVMK--IFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 95 ~~~~~~~~--~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
.|.++--+ +-.| .-...|++.++..++|.|+-.-.|.+.. .|+....+.=+....|||+-+
T Consensus 161 ~GgevvgE~Y~plg~td~~~ii~~I~~~~Pd~V~stlvG~s~~--aF~r~~~~aG~~~~~~Pi~S~ 224 (363)
T PF13433_consen 161 RGGEVVGERYLPLGATDFDPIIAEIKAAKPDFVFSTLVGDSNV--AFYRAYAAAGLDPERIPIASL 224 (363)
T ss_dssp TT-EEEEEEEE-S-HHHHHHHHHHHHHHT-SEEEEE--TTCHH--HHHHHHHHHH-SSS---EEES
T ss_pred cCCEEEEEEEecCCchhHHHHHHHHHhhCCCEEEEeCcCCcHH--HHHHHHHHcCCCcccCeEEEE
Confidence 77765443 2235 6688888888888999877666665532 233334443344446888754
No 362
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=49.77 E-value=51 Score=19.20 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=30.8
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCc--cceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGK--LKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~--~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
..+.|.+..++++++.|.+|..+.-. ....+--++.+.+-.+.++||.+..+..
T Consensus 39 ~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~~~l~~~l~~~~~~pv~~~nDa~ 94 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNMNGTASRETEEAFAELLKERFNLPVVLVDERL 94 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHhhCCcEEEEeCCc
Confidence 34555566666678888888765321 1101112344444556789999887643
No 363
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=49.73 E-value=57 Score=19.73 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=39.2
Q ss_pred HHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 89 NTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
.+++++.|+.++.......-...|.+..++.++|+||-...+... .-.|-..++..-...+|++.
T Consensus 36 ~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~~~~~---~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 36 AKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPSGKRA---IRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCCCCcc---CccHHHHHHHHHHhCCCEEe
Confidence 344556788766543322334778888899999999986543221 11244455555556788764
No 364
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=49.65 E-value=94 Score=22.21 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
...++.+.+.+.+.|+++......+++. ..+++.+...++|-||+......... ...+ .+...++||+++-.
T Consensus 15 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~-----~~l~-~l~~~~ipvV~~~~ 88 (288)
T cd01538 15 IRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALA-----SAVE-KAADAGIPVIAYDR 88 (288)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHH-----HHHH-HHHHCCCCEEEECC
Confidence 5567777787888888876654444443 35555566678999988653221111 1122 34456789988843
No 365
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=49.65 E-value=1.4e+02 Score=24.11 Aligned_cols=46 Identities=7% Similarity=-0.012 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
..+.+++.+..........+..|.-...+.+.....++|+++=+++
T Consensus 401 ~~~~l~~ll~~~~~~~~~~v~~~~Dl~~l~~~l~~~~~DlliG~s~ 446 (515)
T TIGR01286 401 WKAEMKALLAASPYGQNATVWIGKDLWHLRSLVFTEPVDFLIGNSY 446 (515)
T ss_pred HHHHHHHHHhcCCCCCccEEEeCCCHHHHHHHHhhcCCCEEEECch
Confidence 3445555555443333444566656667777777788998885444
No 366
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=49.56 E-value=17 Score=25.88 Aligned_cols=48 Identities=6% Similarity=0.108 Sum_probs=29.8
Q ss_pred HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 110 EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 110 ~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+...+..++.++|++|+.++....-. ..-++.++.....|.+++.+.+
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN~~~PG----P~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPNAAAPG----PTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S-TTSHH----HHHHHHHHHHSSS-EEEEEEGG
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHHHHhCCCCEEEEcCCC
Confidence 44445567889999999887543211 3457789989999999986543
No 367
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=49.54 E-value=80 Score=22.45 Aligned_cols=54 Identities=20% Similarity=0.115 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLK 135 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~ 135 (164)
.+.+..+++.+.+.|+.++...-+- +..+.|..++...-+|+|-|=.+..+.+.
T Consensus 122 I~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ 176 (248)
T PF07476_consen 122 IEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGIN 176 (248)
T ss_dssp HHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTH
T ss_pred HHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchh
Confidence 4577888888999999999877665 88999999999999999999777665543
No 368
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=49.39 E-value=49 Score=26.33 Aligned_cols=48 Identities=4% Similarity=-0.072 Sum_probs=32.2
Q ss_pred ChhHHHHHHhhh----cCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCC
Q 031168 107 DPREKICEAIDK----IPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQG 160 (164)
Q Consensus 107 ~~~~~I~~~a~~----~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 160 (164)
+..+.|.+..++ .++|.||+-.+.-+.- +..-.+++..++|||+...+
T Consensus 49 ~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a------~~~i~~~~~l~~PvL~~~~q 100 (484)
T cd03557 49 TTPDEILAVCREANADDNCAGVITWMHTFSPA------KMWIAGLTALQKPLLHLHTQ 100 (484)
T ss_pred CCHHHHHHHHHHccccCCccEEEEccCCCchH------HHHHHHHHHcCCCEEEEccC
Confidence 445555555555 4599999987755542 34445688889999998543
No 369
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=49.31 E-value=81 Score=21.48 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCceEEEEEee--CCh---hHHHHHHhhhcCCc-EEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW--GDP---REKICEAIDKIPLS-CLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--g~~---~~~I~~~a~~~~~d-liVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
....+++.+.+.+..+...... .++ .+.+.+.+++...+ .+++|++ .+ |=.+..+..+.++|.+++
T Consensus 16 Ka~~l~~~~~~~~~~~~~~~p~l~~~p~~a~~~l~~~i~~~~~~~~~liGSS-lG-------G~~A~~La~~~~~~avLi 87 (187)
T PF05728_consen 16 KAQALKQYFAEHGPDIQYPCPDLPPFPEEAIAQLEQLIEELKPENVVLIGSS-LG-------GFYATYLAERYGLPAVLI 87 (187)
T ss_pred HHHHHHHHHHHhCCCceEECCCCCcCHHHHHHHHHHHHHhCCCCCeEEEEEC-hH-------HHHHHHHHHHhCCCEEEE
Confidence 3356666676666665554332 233 34455566665543 8888876 22 345666777778887777
Q ss_pred cCC
Q 031168 158 KQG 160 (164)
Q Consensus 158 ~~~ 160 (164)
.|.
T Consensus 88 NPa 90 (187)
T PF05728_consen 88 NPA 90 (187)
T ss_pred cCC
Confidence 653
No 370
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=49.03 E-value=88 Score=21.97 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHhcCceEEEEEee-CCh---------hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW-GDP---------REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGS 151 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~---------~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~ 151 (164)
.+.+..+.+.|++.++++-.+... +.. .....+.+.+.++|.|=....+. .-...---....+++..++
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 456667777777778876555322 222 35666788889999999877732 1111111233456777788
Q ss_pred Cc----EEEE
Q 031168 152 CP----VTVV 157 (164)
Q Consensus 152 ~p----Vlvv 157 (164)
+| |.+-
T Consensus 190 ~p~~~~Vk~s 199 (236)
T PF01791_consen 190 VPGKVGVKAS 199 (236)
T ss_dssp STTTSEEEEE
T ss_pred CCcceEEEEe
Confidence 99 7765
No 371
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=49.03 E-value=1.2e+02 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=26.2
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
-.++|+.+++.-+|.-|+- +..+.|.+|..+|+..
T Consensus 180 ~gkvlvllSGGiDSpVAa~----ll~krG~~V~~v~f~~ 214 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAF----LMMKRGVEVIPVHIYM 214 (381)
T ss_pred CCcEEEEEeCChHHHHHHH----HHHHcCCeEEEEEEEe
Confidence 3689999999988875443 3334588999999963
No 372
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=48.99 E-value=69 Score=24.23 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=48.2
Q ss_pred HHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeec-CCCccce----------------ecccchhHHHhhcCC
Q 031168 90 TVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNR-GLGKLKR----------------AIMGSVSNYVVNNGS 151 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~-~~~~~~~----------------~~~gs~~~~l~~~~~ 151 (164)
+.+++.+.-+-..-+.+ ....++++.|++.+..+|+..+. +...... -.+......+..++.
T Consensus 6 ~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 85 (340)
T cd00453 6 QVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG 85 (340)
T ss_pred HHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCC
Confidence 33455566655555555 77889999999999999998766 2211111 234556777888889
Q ss_pred CcEEEEcCCC
Q 031168 152 CPVTVVKQGI 161 (164)
Q Consensus 152 ~pVlvv~~~~ 161 (164)
+||.+--++.
T Consensus 86 VPV~lHLDH~ 95 (340)
T cd00453 86 VPVILHTDHC 95 (340)
T ss_pred CCEEEEcCCC
Confidence 9998765544
No 373
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=48.95 E-value=1.2e+02 Score=23.36 Aligned_cols=43 Identities=9% Similarity=-0.116 Sum_probs=30.0
Q ss_pred CCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 2 DGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 2 ~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
|.++||++.+.-.+..-...-...++-+..+-+..++|--...
T Consensus 1 m~~~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~ 43 (383)
T COG0381 1 MKMLKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHR 43 (383)
T ss_pred CCceEEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccc
Confidence 4567899988777777666666666666666777777765543
No 374
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=48.86 E-value=1e+02 Score=22.34 Aligned_cols=14 Identities=29% Similarity=0.166 Sum_probs=10.7
Q ss_pred ceEEEEeCCChhhH
Q 031168 5 RRVGVAVDFSACSK 18 (164)
Q Consensus 5 ~~ILv~~d~s~~~~ 18 (164)
++|||.+.+++...
T Consensus 171 ~~iLi~~GG~d~~~ 184 (279)
T TIGR03590 171 RRVLVSFGGADPDN 184 (279)
T ss_pred CeEEEEeCCcCCcC
Confidence 57899988887654
No 375
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=48.85 E-value=19 Score=23.41 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=25.1
Q ss_pred hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 109 REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.+.+.+.++++++|.|++.-+.... . . +-. .-+.+++.+|.|.++|
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~-~-~-i~~-ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEE-E-Q-IKR-IIEELENHGVRVRVVP 175 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-H-H-H-HHH-HHHHHHTTT-EEEE--
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCH-H-H-HHH-HHHHHHhCCCEEEEeC
Confidence 4788999999999999998764332 1 1 111 2234566789998887
No 376
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=48.78 E-value=89 Score=21.71 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+.+.|+.+.......++. ...++.....++|-|+++........ ... ..+.+.++|++.+-.
T Consensus 15 ~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~-----~~l-~~l~~~~ipvv~~~~ 88 (268)
T cd06323 15 VTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVV-----PAV-KAANEAGIPVFTIDR 88 (268)
T ss_pred HHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHH-----HHH-HHHHHCCCcEEEEcc
Confidence 5566777777777887775533333443 34555556667999888643211000 111 234556889988843
No 377
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=48.65 E-value=1.2e+02 Score=23.05 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC-------ChhHHHHHHhhhcCC----cEEE-EeecCCCccceecccchhHHHh--hc
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG-------DPREKICEAIDKIPL----SCLV-IGNRGLGKLKRAIMGSVSNYVV--NN 149 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~I~~~a~~~~~----dliV-ig~~~~~~~~~~~~gs~~~~l~--~~ 149 (164)
..+.+.+.++..|+.+...+..+ +..+.+.+.+.+.++ |+|| +|...- ++++..+. ..
T Consensus 41 ~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v--------~D~ak~~A~~~~ 112 (354)
T cd08199 41 YGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVL--------TDVAGLAASLYR 112 (354)
T ss_pred HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHH--------HHHHHHHHHHhc
Confidence 44667777777788776544432 234556666667777 8888 553311 23444443 23
Q ss_pred CCCcEEEEcC
Q 031168 150 GSCPVTVVKQ 159 (164)
Q Consensus 150 ~~~pVlvv~~ 159 (164)
-.+|++.||-
T Consensus 113 rg~p~i~VPT 122 (354)
T cd08199 113 RGTPYVRIPT 122 (354)
T ss_pred CCCCEEEEcC
Confidence 4678877775
No 378
>PRK07369 dihydroorotase; Provisional
Probab=48.55 E-value=42 Score=26.01 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=23.7
Q ss_pred hHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 17 SKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 17 ~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
...++..++.||+..+++++++|+....
T Consensus 212 E~~av~r~~~la~~~~~~~hi~HvSs~~ 239 (418)
T PRK07369 212 ETTALAALLELVAAIGTPVHLMRISTAR 239 (418)
T ss_pred HHHHHHHHHHHHHHHCCcEEEEeCCCHH
Confidence 3456888999999999999999998754
No 379
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=48.46 E-value=88 Score=21.55 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=26.1
Q ss_pred HHHHHHhcCceEEEEE--ee---CChhHHHHHHhhhcCCcEEEEee
Q 031168 88 VNTVARQKQIVVVMKI--FW---GDPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~--~~---g~~~~~I~~~a~~~~~dliVig~ 128 (164)
+.+.+++.|+++...- .. .....++.+..+..++|++|+-.
T Consensus 43 ~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 43 GLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHH
Confidence 4566777888864421 11 11245677888888899998844
No 380
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=47.99 E-value=95 Score=21.82 Aligned_cols=72 Identities=15% Similarity=0.087 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHhcCceEEEEEee--CChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW--GDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~--g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
....+.+.+.+++.|+++...... +++. ...++.....++|-||+......... +..+ .+....+||+.+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~ 88 (275)
T cd06320 15 RSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLV-----PAVE-RAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhH-----HHHH-HHHHCCCeEEEE
Confidence 456677778888888877665432 2432 34455566668998888643221111 1223 345568898888
Q ss_pred cC
Q 031168 158 KQ 159 (164)
Q Consensus 158 ~~ 159 (164)
..
T Consensus 89 ~~ 90 (275)
T cd06320 89 ND 90 (275)
T ss_pred CC
Confidence 54
No 381
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.98 E-value=94 Score=21.73 Aligned_cols=69 Identities=7% Similarity=0.093 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|+++.......+. ...+.+.....++|-||+...... ...+ .+...++|++++-.
T Consensus 18 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--------~~~~-~l~~~~ipvV~~~~ 88 (268)
T cd06277 18 SEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST--------EYIK-EIKELGIPFVLVDH 88 (268)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh--------HHHH-HHhhcCCCEEEEcc
Confidence 556777778888888776654433332 224455556678999998553211 1123 34556788888754
No 382
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=47.74 E-value=49 Score=18.43 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=22.9
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEE
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLI 36 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~ 36 (164)
++|.++.|.+.....+...+...+...+..+.
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~ 75 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRVR 75 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 89999999998877677666666655444443
No 383
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=47.31 E-value=1.2e+02 Score=27.09 Aligned_cols=49 Identities=6% Similarity=0.099 Sum_probs=36.9
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeC--ChhHHHHHHhhhcCCcEEEEeecC
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWG--DPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
+++..+.+++.+...+++++..-+.- .....|++...+.++|+| ||+|.
T Consensus 656 A~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIv-IGTHr 706 (1139)
T COG1197 656 AQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIV-IGTHR 706 (1139)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEE-EechH
Confidence 37788889988887777777665543 567888898889899865 56663
No 384
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=47.19 E-value=1e+02 Score=21.86 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=27.3
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
.+|+|++++..+|..++..+... +.++.++++....
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~----~~~i~vvfiDTG~ 76 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV----DPDIPVIFLDTGY 76 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc----CCCCcEEEecCCC
Confidence 46999999999998888877774 3467777776544
No 385
>PRK12361 hypothetical protein; Provisional
Probab=47.17 E-value=1.2e+02 Score=24.46 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
+..+++.+.+.+. ++++...... .-+..+.+.+.+.++|+||+... -+.+. .+.+.+. +.++|+-++|-..
T Consensus 260 ~~~~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GG-DGTl~-----ev~~~l~-~~~~~lgiiP~GT 331 (547)
T PRK12361 260 EYGEQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIACGG-DGTVT-----EVASELV-NTDITLGIIPLGT 331 (547)
T ss_pred HHHHHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEECC-CcHHH-----HHHHHHh-cCCCCEEEecCCc
Confidence 3445555555543 4544433332 44677777776667788776433 34333 3344443 3568888888543
No 386
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=47.10 E-value=45 Score=23.54 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=30.3
Q ss_pred hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 109 REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
..++++.+.+.+.|.|++|...--.... +..+.. .+++...||++.|...
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~--~~~~v~-~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEK--TDTLIE-ALRRYGLPIILFPSNP 65 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHH--HHHHHH-HHhccCCCEEEeCCCc
Confidence 4567777778889999998763211111 122333 3344559999988654
No 387
>PLN02347 GMP synthetase
Probab=47.03 E-value=1.6e+02 Score=23.98 Aligned_cols=38 Identities=24% Similarity=0.023 Sum_probs=28.0
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
.++++|++++.-+|.-++..+.+. .+.+++++++....
T Consensus 229 ~~~vvvalSGGVDSsvla~l~~~a---lG~~v~av~id~g~ 266 (536)
T PLN02347 229 DEHVICALSGGVDSTVAATLVHKA---IGDRLHCVFVDNGL 266 (536)
T ss_pred CCeEEEEecCChhHHHHHHHHHHH---hCCcEEEEEEeCCC
Confidence 568999999998887665555542 35689999988644
No 388
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=47.02 E-value=1.1e+02 Score=22.12 Aligned_cols=66 Identities=12% Similarity=0.246 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+-++.+.+.+++.|+.+-+.+..-.-.+.+.+ . +|++=+|++.-.... ... -+.++..||++=+.
T Consensus 65 ~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e----~-vdilqIgs~~~~n~~------LL~-~va~tgkPVilk~G 130 (250)
T PRK13397 65 LQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD----Y-LDVIQVGARNMQNFE------FLK-TLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh----c-CCEEEECcccccCHH------HHH-HHHccCCeEEEeCC
Confidence 457889999999999998886665444444332 2 788888877543311 112 22234677766543
No 389
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=46.86 E-value=1.1e+02 Score=22.02 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh----cCCcEEEEeecCC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK----IPLSCLVIGNRGL 131 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~----~~~dliVig~~~~ 131 (164)
+..+..++.+.+.|+.-...+..|+..+.+-+.... ..+|+|++...+.
T Consensus 115 ~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~ 167 (247)
T PLN02589 115 ENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKD 167 (247)
T ss_pred HHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHH
Confidence 345566777777888767778889888887776542 4789999987643
No 390
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=46.75 E-value=19 Score=27.92 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.5
Q ss_pred ChhHHHHHHhhhcCCcEEEEeec
Q 031168 107 DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+-.+.|+++|++.++||+|+|.-
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGPE 72 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGPE 72 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECCc
Confidence 45789999999999999999965
No 391
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=46.54 E-value=1.3e+02 Score=22.98 Aligned_cols=64 Identities=9% Similarity=0.068 Sum_probs=38.2
Q ss_pred HHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCcccee--cccchhHHHh-hcCCCcEEEEc
Q 031168 90 TVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRA--IMGSVSNYVV-NNGSCPVTVVK 158 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~--~~gs~~~~l~-~~~~~pVlvv~ 158 (164)
..+.+.|++++... ++.+. ....+.++|.||+|..+-...... -+|...-.++ ++..+|++++-
T Consensus 213 ~eL~~~GI~vtlI~--Dsav~---~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~A 279 (356)
T PRK08334 213 WEYHYDGIPLKLIS--DNMAG---FVMQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVA 279 (356)
T ss_pred HHHHHCCCCEEEEe--hhHHH---HHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEc
Confidence 34566799887532 22222 234445689999999853322221 2455554555 56689999984
No 392
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=46.42 E-value=58 Score=19.98 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
..+.+++.++.+......++.+. .|++.+++++++.-..
T Consensus 52 ~~~d~vi~is~sg~~~~~~~~~~-~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRELIELLR-FAKERGAPVILITSNS 90 (131)
T ss_dssp STTEEEEEEESSSTTHHHHHHHH-HHHHTTSEEEEEESST
T ss_pred cccceeEeeeccccchhhhhhhH-HHHhcCCeEEEEeCCC
Confidence 45678999998888887777777 8888999986665443
No 393
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=46.05 E-value=87 Score=24.16 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=27.8
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCCCccce----ecccchhHHHhhcCCCcEEEE
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGLGKLKR----AIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~~~~~~----~~~gs~~~~l~~~~~~pVlvv 157 (164)
||++.-....+.+++|+|.+-..+..+... --+-.+++.|+..+.+|+++.
T Consensus 140 dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~ 194 (389)
T TIGR00381 140 DPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIG 194 (389)
T ss_pred CHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEe
Confidence 344444444566777777775543222200 012356666777777777776
No 394
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.00 E-value=1e+02 Score=21.60 Aligned_cols=72 Identities=10% Similarity=-0.063 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|+++...-..+++. ...++.....++|-||++........ ..-..+...++||+++-.
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~------~~l~~~~~~~ipvV~~~~ 88 (277)
T cd06319 15 QIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAV------TLLKLAAQAKIPVVIADI 88 (277)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhH------HHHHHHHHCCCCEEEEec
Confidence 4567777777888887765433333443 23344444567999988653221111 112345566889988743
No 395
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=45.87 E-value=1e+02 Score=21.62 Aligned_cols=72 Identities=7% Similarity=0.020 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|+++...-..++.. ..+++.....++|-||+......... ... .-+.....||+++-.
T Consensus 15 ~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~i-~~~~~~~iPvV~~~~ 88 (273)
T cd06309 15 TAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWD-----PVL-KEAKAAGIPVILVDR 88 (273)
T ss_pred HHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccch-----HHH-HHHHHCCCCEEEEec
Confidence 5577888888888888877643333442 34555566678999988653221111 111 234556789888854
No 396
>COG1162 Predicted GTPases [General function prediction only]
Probab=45.73 E-value=1.2e+02 Score=22.49 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=53.3
Q ss_pred EEEEeCCChhhHHHHHHHHhhcccCCCE-EEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHH
Q 031168 7 VGVAVDFSACSKKALQWAADNVVRNGDH-LILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETL 85 (164)
Q Consensus 7 ILv~~d~s~~~~~~l~~a~~la~~~~~~-l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
|+|.....+.+...++..+-+|...+.+ |.++.=.+.... .....
T Consensus 85 iIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~----------------------------------~~~~~ 130 (301)
T COG1162 85 IVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDD----------------------------------EEAAV 130 (301)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcc----------------------------------hHHHH
Confidence 4445555566888999999999888874 555543332210 01111
Q ss_pred HHHHHHHHhcCceEEEEE-eeCChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 86 DIVNTVARQKQIVVVMKI-FWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~g~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
+......+..|+.+-..- ..++..+++...-+.. -.+++|.+|-+
T Consensus 131 ~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~--~svl~GqSGVG 176 (301)
T COG1162 131 KELLREYEDIGYPVLFVSAKNGDGLEELAELLAGK--ITVLLGQSGVG 176 (301)
T ss_pred HHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCC--eEEEECCCCCc
Confidence 344445555677654433 3456777777776664 57888887543
No 397
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=45.70 E-value=1e+02 Score=21.44 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHhcCceEEEE-EeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMK-IFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+-+++.+++.|..+... -..+++. ...++.+-..++|.||+......... ...++ +....+||+.+-
T Consensus 14 ~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~-----~~l~~-~~~~gIpvv~~d 87 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLA-----PFLEK-AKAAGIPVVTVD 87 (257)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTH-----HHHHH-HHHTTSEEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHH-----HHHHH-HhhcCceEEEEe
Confidence 456777888888889988875 3334553 33445566678999999876544333 22333 455589999885
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 88 ~~ 89 (257)
T PF13407_consen 88 SD 89 (257)
T ss_dssp ST
T ss_pred cc
Confidence 44
No 398
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=45.62 E-value=1.5e+02 Score=23.53 Aligned_cols=39 Identities=5% Similarity=0.111 Sum_probs=26.2
Q ss_pred HHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 91 VARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 91 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.....+.+.-.-+-.|.....-++.+++.+.|.||+.+|
T Consensus 84 ~~~~~~~~liItvD~G~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 84 KLKEEGADLIITVDNGSGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred HHHhcCCCEEEEECCCcccHHHHHHHHhCCCcEEEECCC
Confidence 344456665555667766666666666777888888777
No 399
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=45.58 E-value=1.3e+02 Score=22.83 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=49.9
Q ss_pred HHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCC-CcEEEEcCCC
Q 031168 88 VNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGS-CPVTVVKQGI 161 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~-~pVlvv~~~~ 161 (164)
+-..+.+.+.-+-..-... .....+++.|++.+..+|+..+.+...... -++......+..+++ +||.+-=++.
T Consensus 9 lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg 85 (347)
T PRK13399 9 LLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHG 85 (347)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence 3344555666655544444 789999999999999999987765432222 235567777777775 8988765544
No 400
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.12 E-value=1e+02 Score=21.85 Aligned_cols=72 Identities=11% Similarity=0.034 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|+.+.+....+++. ...++.....++|-||+......... ....+ +.....||+++-.
T Consensus 15 ~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~-----~~i~~-~~~~~iPvV~~~~ 88 (272)
T cd06313 15 AQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLT-----EAVQK-AIARGIPVIDMGT 88 (272)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhH-----HHHHH-HHHCCCcEEEeCC
Confidence 4466777777778888877655444443 34555666788999999543211111 12222 3445789988853
No 401
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=44.97 E-value=1.2e+02 Score=21.97 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=38.4
Q ss_pred HHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccce--ecccchhHHHh-hcCCCcEEEEcC
Q 031168 87 IVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKR--AIMGSVSNYVV-NNGSCPVTVVKQ 159 (164)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~--~~~gs~~~~l~-~~~~~pVlvv~~ 159 (164)
.+...+.+.|++++.. ..+....+ .. ++|.+++|...-..... .-.|+-.-.++ ++..+||+++-.
T Consensus 125 ~~a~~L~~~GI~vtli--~Dsa~~~~---m~--~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~ 193 (253)
T PRK06372 125 DMAKLLVKSGIDVVLL--TDASMCEA---VL--NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTI 193 (253)
T ss_pred HHHHHHHHCCCCEEEE--ehhHHHHH---HH--hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEee
Confidence 4555566779988643 22222222 23 38999999985322222 12455555555 566899998743
No 402
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=44.89 E-value=1.1e+02 Score=22.35 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=49.0
Q ss_pred hHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhcC
Q 031168 17 SKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQ 96 (164)
Q Consensus 17 ~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
....++.+++.|...++++.+-.-.....+. .-...+...++..+++.+
T Consensus 25 n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~-------------------------------~~~~~~~~~~~~~a~~~~ 73 (282)
T TIGR01859 25 NLEWTQAILEAAEEENSPVIIQVSEGAIKYM-------------------------------GGYKMAVAMVKTLIERMS 73 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhcc-------------------------------CcHHHHHHHHHHHHHHCC
Confidence 4456777778888888888875322111100 001335566666677777
Q ss_pred -ceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCC
Q 031168 97 -IVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 97 -~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
+++-.+...|...+.|.+.. ..+++.|.+..+..
T Consensus 74 ~vpv~lhlDH~~~~e~i~~ai-~~Gf~sVmid~s~l 108 (282)
T TIGR01859 74 IVPVALHLDHGSSYESCIKAI-KAGFSSVMIDGSHL 108 (282)
T ss_pred CCeEEEECCCCCCHHHHHHHH-HcCCCEEEECCCCC
Confidence 77777777776555444444 44677777765543
No 403
>PRK13794 hypothetical protein; Provisional
Probab=44.85 E-value=1.6e+02 Score=23.49 Aligned_cols=37 Identities=19% Similarity=0.009 Sum_probs=27.1
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
.+++|++++..+|..++..+.... +..+.++++....
T Consensus 248 ~~v~vs~SGGKDS~v~L~L~~~~~---~~~~~vvfiDTG~ 284 (479)
T PRK13794 248 KPVTVAYSGGKDSLATLLLALKAL---GINFPVLFNDTGL 284 (479)
T ss_pred CCEEEEecchHHHHHHHHHHHHHh---CCCeEEEEEECCC
Confidence 478999999999987777666554 4467788876543
No 404
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=44.81 E-value=1.4e+02 Score=22.76 Aligned_cols=73 Identities=15% Similarity=0.061 Sum_probs=49.5
Q ss_pred HHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccce-ecccchhHHHhhcCC-CcEEEEcCCC
Q 031168 89 NTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKR-AIMGSVSNYVVNNGS-CPVTVVKQGI 161 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~-~~~gs~~~~l~~~~~-~pVlvv~~~~ 161 (164)
-+.+.+.+.-+-..-... ....+|++.|++.+..+|+..+.+.-.... -++......+..+++ +||.+-=++.
T Consensus 8 L~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg 83 (347)
T TIGR01521 8 LDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHG 83 (347)
T ss_pred HHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 344555566655544444 779999999999999999987765432221 234567777888886 8998765443
No 405
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=44.80 E-value=44 Score=21.12 Aligned_cols=45 Identities=4% Similarity=0.085 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCceEEEEEeeCC-hhHHHHHHhhhcCCcEEEEeecC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliVig~~~ 130 (164)
.+.+...+.+.|+.++++..-.. ....|-.. +-..+|+|++..-.
T Consensus 21 AeaLe~~A~~~g~~IKVETqGs~G~eN~LT~e-dI~~Ad~VI~AaD~ 66 (122)
T COG1445 21 AEALEKAAKKLGVEIKVETQGAVGIENRLTAE-DIAAADVVILAADI 66 (122)
T ss_pred HHHHHHHHHHcCCeEEEEcCCcccccCcCCHH-HHHhCCEEEEEecc
Confidence 45566667777887776544322 22333222 22347999998764
No 406
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=44.73 E-value=1.4e+02 Score=22.95 Aligned_cols=34 Identities=15% Similarity=-0.055 Sum_probs=25.8
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
.++++.+++.-+|.-++.++.. .+.++..+|+..
T Consensus 177 gkvvvllSGGiDS~vaa~l~~k----~G~~v~av~~~~ 210 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLAMK----RGVEIEAVHFHS 210 (394)
T ss_pred CCEEEEECCChhHHHHHHHHHH----CCCEEEEEEEeC
Confidence 5899999999888766655533 477899999854
No 407
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=44.73 E-value=55 Score=23.37 Aligned_cols=60 Identities=22% Similarity=0.056 Sum_probs=37.5
Q ss_pred CceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 96 QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
|++..-+...|||.+-...|.++ ++|=+|.=.-..+...+-.+-++.+++....-+|+.+
T Consensus 20 Gv~F~~lrd~GDpVelA~~Y~e~-GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltV 79 (256)
T COG0107 20 GVNFKNLRDAGDPVELAKRYNEE-GADELVFLDITASSEGRETMLDVVERVAEQVFIPLTV 79 (256)
T ss_pred cccccchhhcCChHHHHHHHHHc-CCCeEEEEecccccccchhHHHHHHHHHhhceeeeEe
Confidence 44544444558888877777666 4666665333334444445567777788887777765
No 408
>PLN02476 O-methyltransferase
Probab=44.72 E-value=1.2e+02 Score=22.18 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhh---hcCCcEEEEeecC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAID---KIPLSCLVIGNRG 130 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~---~~~~dliVig~~~ 130 (164)
.+..+..++.+++.|+.-...+..|+..+.+-+... ....|+|++...+
T Consensus 153 ~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 153 SNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCH
Confidence 456677777788889886777888998887766542 2468999998874
No 409
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.59 E-value=1.7e+02 Score=23.86 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=16.0
Q ss_pred EEEEeC--CChhhHHHHHHHHhhcccC-CCEEEEEEE
Q 031168 7 VGVAVD--FSACSKKALQWAADNVVRN-GDHLILVTV 40 (164)
Q Consensus 7 ILv~~d--~s~~~~~~l~~a~~la~~~-~~~l~~l~v 40 (164)
+++-+. +...+.-+...+..++... +.++.++..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt 388 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT 388 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 444443 3333444445555555443 345666654
No 410
>PRK08005 epimerase; Validated
Probab=44.42 E-value=50 Score=23.04 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEee
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~ 128 (164)
+..+++++...+..+.+. |.+...-+..+.+.++|.+|+|+
T Consensus 152 ~KI~~l~~~~~~~~I~VD-----GGI~~~~i~~l~~aGad~~V~Gs 192 (210)
T PRK08005 152 EKVSQSREHFPAAECWAD-----GGITLRAARLLAAAGAQHLVIGR 192 (210)
T ss_pred HHHHHHHHhcccCCEEEE-----CCCCHHHHHHHHHCCCCEEEECh
No 411
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=44.39 E-value=52 Score=23.38 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=28.1
Q ss_pred HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcCCC
Q 031168 111 KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQGI 161 (164)
Q Consensus 111 ~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 161 (164)
..++.+-+.+.|.|++|.+.- ...--+..+... +++.+.||++.|...
T Consensus 23 ~~~~~~~~~gtdai~vGGS~~--vt~~~~~~~v~~-ik~~~lPvilfp~~~ 70 (232)
T PRK04169 23 EALEAICESGTDAIIVGGSDG--VTEENVDELVKA-IKEYDLPVILFPGNI 70 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCCc--cchHHHHHHHHH-HhcCCCCEEEeCCCc
Confidence 333666677889999987631 111111223333 344789999988654
No 412
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=44.15 E-value=1.3e+02 Score=22.20 Aligned_cols=74 Identities=9% Similarity=0.045 Sum_probs=49.5
Q ss_pred HHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCcc-c-eecccchhHHHhhcC--CCcEEEEcCCC
Q 031168 88 VNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKL-K-RAIMGSVSNYVVNNG--SCPVTVVKQGI 161 (164)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~-~-~~~~gs~~~~l~~~~--~~pVlvv~~~~ 161 (164)
+-+.+++.+.-+-..-... .....+++.|++.+..+|+....+.... . --.+.........++ .+||.+-=++.
T Consensus 9 iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg 87 (288)
T TIGR00167 9 LLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHG 87 (288)
T ss_pred HHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCC
Confidence 3344555666655544444 7899999999999999999876643322 1 123456777778888 88988765543
No 413
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=44.09 E-value=1.3e+02 Score=23.12 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCceEEEE-EeeCCh----hHHHHHHhhhcCCcEEEE
Q 031168 84 TLDIVNTVARQKQIVVVMK-IFWGDP----REKICEAIDKIPLSCLVI 126 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~g~~----~~~I~~~a~~~~~dliVi 126 (164)
..+++.+.+++.|+.+... ...++| .+...+.+++.++|.||-
T Consensus 65 ~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~Iia 112 (395)
T PRK15454 65 MTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIA 112 (395)
T ss_pred cHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEE
Confidence 5566777777788876543 123333 567777889999998875
No 414
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.92 E-value=88 Score=20.28 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=9.6
Q ss_pred HHHHhhhcCCcEEEEeec
Q 031168 112 ICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 112 I~~~a~~~~~dliVig~~ 129 (164)
+.++.+++++|-|||-.|
T Consensus 53 f~kl~~dy~Vd~VvIk~R 70 (138)
T PF11215_consen 53 FAKLMEDYKVDKVVIKER 70 (138)
T ss_pred HHHHHHHcCCCEEEEEec
Confidence 444555555555555444
No 415
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=43.89 E-value=44 Score=26.41 Aligned_cols=49 Identities=12% Similarity=0.297 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEe------eCChhHHHHHHhh-hcCCcEEEEeecC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIF------WGDPREKICEAID-KIPLSCLVIGNRG 130 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~I~~~a~-~~~~dliVig~~~ 130 (164)
+++.+.+.+.....+-+.-..+. -|+-.+.+++.++ +.++.+|.+...+
T Consensus 105 ~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~pvi~v~t~G 160 (475)
T PRK14478 105 KKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIPVIPVNSPG 160 (475)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhCCCEEEEECCC
Confidence 45555555555544433222211 1544444544433 3456666665544
No 416
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=43.84 E-value=1.1e+02 Score=21.44 Aligned_cols=70 Identities=6% Similarity=0.033 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|+++.......+..+.+.+.....++|-||+-..... . ... +-+...+.||+++..
T Consensus 26 ~~~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~--~-----~~~-~~~~~~~ipvV~~~~ 95 (275)
T cd06295 26 LSLLGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ--D-----PLP-ERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC--h-----HHH-HHHHhCCCCEEEECC
Confidence 446666777787778877654433344456666666678898777432111 1 112 234567889888754
No 417
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=43.80 E-value=1e+02 Score=22.27 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=36.1
Q ss_pred HHHhcCceEEEE-EeeCChhHHHH-HHhhhcCCcEEEEeecCCCccceecccchhHH--HhhcCCCcEEEEcCC
Q 031168 91 VARQKQIVVVMK-IFWGDPREKIC-EAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNY--VVNNGSCPVTVVKQG 160 (164)
Q Consensus 91 ~~~~~~~~~~~~-~~~g~~~~~I~-~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~--l~~~~~~pVlvv~~~ 160 (164)
.|.+.|+.-+-. ...|....+.. ...+++++|.||.=.+|.+ |...++ ......+||+++.+.
T Consensus 166 ~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~-------Gg~~eKi~AA~~lgi~vivI~RP 232 (256)
T TIGR00715 166 QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQ-------GGELEKVKAAEALGINVIRIARP 232 (256)
T ss_pred HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCc-------cchHHHHHHHHHcCCcEEEEeCC
Confidence 344555543333 33453333433 5678889999988555443 222233 556778999998544
No 418
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=43.77 E-value=64 Score=22.53 Aligned_cols=35 Identities=14% Similarity=-0.083 Sum_probs=27.1
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEE
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTV 40 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v 40 (164)
-++||+++.+|-.+..+.+....|- + +++|.++--
T Consensus 19 ~k~IllgVtGSIAAyk~~~lvr~L~-~-g~~V~VvmT 53 (209)
T PLN02496 19 KPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAVVT 53 (209)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHhc-C-CCeEEEEEC
Confidence 4789999999999998888777775 3 667766543
No 419
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=43.59 E-value=57 Score=22.21 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGD 107 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~ 107 (164)
.++.+.+.+.+.++. ..+..||
T Consensus 29 ~~~~~~~~~~~~~~d--~i~~~GD 50 (223)
T cd00840 29 AFEEIVELAIEEKVD--FVLIAGD 50 (223)
T ss_pred HHHHHHHHHHhcCCC--EEEECCc
Confidence 344444444444443 3444443
No 420
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=43.46 E-value=1.2e+02 Score=21.63 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=43.1
Q ss_pred CchHHHHHHHHHHhcCceEEEEEeeC---------ChhHHHHHHhh---hcCCcEEEEeecCCCccceecccchhHHHhh
Q 031168 81 DPETLDIVNTVARQKQIVVVMKIFWG---------DPREKICEAID---KIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN 148 (164)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~~~~I~~~a~---~~~~dliVig~~~~~~~~~~~~gs~~~~l~~ 148 (164)
....-+.+++++++.|+++....-.| -..+.|.+.++ ..++|.|++....... -.+...+=.
T Consensus 130 ~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt------~~vi~~lE~ 203 (239)
T TIGR02990 130 TPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRA------ATCAQRIEQ 203 (239)
T ss_pred cHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchh------HHHHHHHHH
Confidence 35666777888888888875543222 12455555555 4578888887554332 235566666
Q ss_pred cCCCcEEE
Q 031168 149 NGSCPVTV 156 (164)
Q Consensus 149 ~~~~pVlv 156 (164)
...+||+-
T Consensus 204 ~lGkPVls 211 (239)
T TIGR02990 204 AIGKPVVT 211 (239)
T ss_pred HHCCCEEE
Confidence 67778763
No 421
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=43.40 E-value=1.2e+02 Score=21.60 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=23.6
Q ss_pred CCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 3 GTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 3 ~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
..++|+|++++.-+|..++..+... .+.++..+++..
T Consensus 21 ~~~~V~vglSGGiDSsvla~l~~~~---~~~~~~~~~~~~ 57 (250)
T TIGR00552 21 GAKGVVLGLSGGIDSAVVAALCVEA---LGEQNHALLLPH 57 (250)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHh---hCCceEEEEECC
Confidence 3578999999998887555444332 233666666643
No 422
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=43.02 E-value=33 Score=22.95 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=32.4
Q ss_pred CCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 80 PDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
..+++.+.+...+++.|++++..- ..++.. ..-.++|-||||++-+.
T Consensus 13 qT~kIA~~iA~~L~e~g~qvdi~d-----l~~~~~-~~l~~ydavVIgAsI~~ 59 (175)
T COG4635 13 QTRKIAEYIASHLRESGIQVDIQD-----LHAVEE-PALEDYDAVVIGASIRY 59 (175)
T ss_pred cHHHHHHHHHHHhhhcCCeeeeee-----hhhhhc-cChhhCceEEEecchhh
Confidence 447788888999998999888642 223332 23345899999998543
No 423
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=42.99 E-value=99 Score=20.59 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHhc--CceEEEEEe---eCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 82 PETLDIVNTVARQK--QIVVVMKIF---WGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~~~~~---~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
++..+.+.+.+++. ++++.-... ..+..+.|++.++..++|+|++|-.... .+.+ ..+.....+.+|++
T Consensus 58 ~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~Pk--QE~~----~~~~~~~l~~~v~i 131 (172)
T PF03808_consen 58 EEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPK--QERW----IARHRQRLPAGVII 131 (172)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCH--HHHH----HHHHHHHCCCCEEE
Confidence 34555555555543 555443221 1256889999999999999999987332 2222 23455555666544
No 424
>PRK06247 pyruvate kinase; Provisional
Probab=42.98 E-value=81 Score=25.11 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=33.0
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh-cCCCcEEEEcCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN-NGSCPVTVVKQG 160 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 160 (164)
.+....+.|...++.+||+-++ + |+++..+.+ +.+|||+.+-+.
T Consensus 357 ia~sa~~~A~~l~a~~Iv~~T~--s-------G~ta~~isk~RP~~pI~a~t~~ 401 (476)
T PRK06247 357 ISYAARDIAERLDLAALVAYTS--S-------GDTALRAARERPPLPILALTPN 401 (476)
T ss_pred HHHHHHHHHHhCCCCEEEEEcC--C-------cHHHHHHHhhCCCCCEEEECCC
Confidence 4556667888899998888654 2 677887876 467999988654
No 425
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=42.96 E-value=1.1e+02 Score=21.18 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+.+++.|+.+.......++ ...+++.....++|-|++....... .....+ ....||+++.
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~--------~~~~~~-~~~ipvv~~~ 84 (267)
T cd06284 15 SEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPP--------TALTAL-AKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCH--------HHHHHH-hcCCCEEEEe
Confidence 567788888888888887654443444 4456667777789988884332111 111223 3378888774
No 426
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=42.81 E-value=1.4e+02 Score=22.31 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=28.7
Q ss_pred chHHHHHH-HHHHhcCceEEEEEee---CCh-hHHHHHHhhhcCCcEEEE
Q 031168 82 PETLDIVN-TVARQKQIVVVMKIFW---GDP-REKICEAIDKIPLSCLVI 126 (164)
Q Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~~~~---g~~-~~~I~~~a~~~~~dliVi 126 (164)
++.++.++ ++.+..++++.+++.. |+. .+.|.+.....++.++|=
T Consensus 83 ~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVN 132 (312)
T KOG1014|consen 83 QEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVN 132 (312)
T ss_pred HHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEEEe
Confidence 44444444 4555567777776553 443 788888888877766664
No 427
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=42.72 E-value=50 Score=18.16 Aligned_cols=25 Identities=16% Similarity=-0.024 Sum_probs=17.1
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcc
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVV 29 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~ 29 (164)
++|.++.|.+...+.+.....+...
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~ 72 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLK 72 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhh
Confidence 4688888888877766666555443
No 428
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=42.70 E-value=1.3e+02 Score=21.73 Aligned_cols=76 Identities=9% Similarity=0.065 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCCh--hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDP--REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+..+.+.+.+. ..+.+-..+-..+. .-.+.+.+++.++|-+++..+.......--+-..-..|+..++.|+++...
T Consensus 54 ~l~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 54 EVIEAVVEAVA-GRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred HHHHHHHHHhC-CCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 34444444432 24444443333333 444557789999999999876443322211223345577778899998743
No 429
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=42.68 E-value=1.3e+02 Score=21.85 Aligned_cols=76 Identities=7% Similarity=0.074 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+..+.+.+.+. ..+.+-..+-..+..+ .+.+.|++.++|-+++..+..-....--+-.--..|...++.||++...
T Consensus 55 ~~~~~~~~~~~-~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~ 132 (285)
T TIGR00674 55 KVIEFVVDLVN-GRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNV 132 (285)
T ss_pred HHHHHHHHHhC-CCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 34444444432 2344444333223433 3557788999999999876433222111112334467778899988743
No 430
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=42.62 E-value=20 Score=23.93 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=35.1
Q ss_pred EEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHH-----hh--cCCCcEEEEcCCCC
Q 031168 102 KIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYV-----VN--NGSCPVTVVKQGIH 162 (164)
Q Consensus 102 ~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l-----~~--~~~~pVlvv~~~~~ 162 (164)
.+..|....-|.-..+-.++|++++..-..+...+...| +++.| .. +...||+++|.+..
T Consensus 70 ~~e~~ansPfi~GrlqlGkYD~llvaPaTsNTvAKIa~G-IADtLVTNAVaqa~Kg~VPvyivP~D~k 136 (187)
T COG1036 70 EVEIGANSPFIAGRLQLGKYDFLLVAPATSNTVAKIAYG-IADTLVTNAVAQAGKGKVPVYIVPVDYK 136 (187)
T ss_pred EeecCCCCCceecceecccccEEEEcccccchHHHHHhh-hHHHHHHHHHHHhcCCCCcEEEeccccc
Confidence 344454444455555556689999976655554443332 33333 33 34699999997654
No 431
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=42.43 E-value=24 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.0
Q ss_pred hhHHHHHHhhhcCCcEEEEeec
Q 031168 108 PREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~ 129 (164)
..++|++.|++.+.|||++|.-
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGD 61 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGD 61 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCc
Confidence 4799999999999999999974
No 432
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=42.35 E-value=96 Score=20.21 Aligned_cols=72 Identities=22% Similarity=0.163 Sum_probs=41.1
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEee--CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFW--GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
...++..+.+++.+.+.|++++..-.. |...+.|-+.. .++|-||+.....+..+ --....+.....|++=
T Consensus 24 ~tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~--~~~dgiIINpga~THtS-----iAl~DAl~~~~~P~vE 96 (141)
T TIGR01088 24 QTLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAE--GQYDGIIINPGALTHTS-----VALRDALAAVSLPVVE 96 (141)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcc--ccCCEEEEcChHHhhhH-----HHHHHHHHcCCCCEEE
Confidence 345667777777777778776654322 33444443332 23799999765443211 1123456667888875
Q ss_pred E
Q 031168 157 V 157 (164)
Q Consensus 157 v 157 (164)
|
T Consensus 97 V 97 (141)
T TIGR01088 97 V 97 (141)
T ss_pred E
Confidence 5
No 433
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=42.25 E-value=1e+02 Score=22.10 Aligned_cols=34 Identities=29% Similarity=0.262 Sum_probs=20.4
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEec
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVP 42 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~ 42 (164)
.+++.|++|.+.... + .+++...+..+..+-|..
T Consensus 11 ~~~livaLD~~~~~~-~----~~~~~~~~~~~~~~Kvg~ 44 (240)
T COG0284 11 SRRLIVALDVPTEEE-A----LAFVDKLGPTVDFVKVGK 44 (240)
T ss_pred ccCeEEEECCCCHHH-H----HHHHHHhhccccEEEEch
Confidence 345999999997554 3 444545444555555544
No 434
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=42.19 E-value=46 Score=25.82 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=11.9
Q ss_pred CChhHHHHHHhh-hcCCcEEEEeecC
Q 031168 106 GDPREKICEAID-KIPLSCLVIGNRG 130 (164)
Q Consensus 106 g~~~~~I~~~a~-~~~~dliVig~~~ 130 (164)
|+-.+.+.+.++ +.++.++.+...+
T Consensus 101 GdDi~~v~~~~~~~~~~~vi~v~t~g 126 (430)
T cd01981 101 QEDLQNFVRAAGLSSKSPVLPLDVNH 126 (430)
T ss_pred hhCHHHHHHHhhhccCCCeEEecCCC
Confidence 444444444433 3445555555543
No 435
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=42.13 E-value=1.5e+02 Score=22.38 Aligned_cols=34 Identities=3% Similarity=0.005 Sum_probs=25.6
Q ss_pred CceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 96 QIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 96 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
|.+++....+|.-.....+...-..+|+++.+..
T Consensus 57 g~~v~i~~s~ggSg~~~~qi~~G~~ADV~~~A~~ 90 (338)
T PRK10852 57 GDKLTIKQSHAGSSKQALAILQGLKADVVTYNQV 90 (338)
T ss_pred CCceEEEEcCCCcHHHHHHHhcCCCcCEEecCCH
Confidence 8888877788876666666666667899988763
No 436
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=41.95 E-value=1.6e+02 Score=22.52 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=44.8
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchH
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPET 84 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
++++|..+. ..++..+..|. ..|.++..+...... ...
T Consensus 272 ~~v~i~~~~----~~~~~l~~~L~-elG~~v~~v~~~~~~-------------------------------------~~~ 309 (398)
T PF00148_consen 272 KRVAIYGDP----DRALGLARFLE-ELGMEVVAVGCDDKS-------------------------------------PED 309 (398)
T ss_dssp -EEEEESSH----HHHHHHHHHHH-HTT-EEEEEEESSGG-------------------------------------HHH
T ss_pred ceEEEEcCc----hhHHHHHHHHH-HcCCeEEEEEEccCc-------------------------------------hhH
Confidence 566664432 34555555555 688888877766543 122
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+...+.+. ...+..+.-..++.+..++.++|+++-+..
T Consensus 310 ~e~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~pdl~ig~~~ 350 (398)
T PF00148_consen 310 EERLRWLLEES----DPEVIIDPDPEEIEELLEELKPDLLIGSSH 350 (398)
T ss_dssp HHHHHHHHHTT----CSEEEESCBHHHHHHHHHHHT-SEEEESHH
T ss_pred HHHHHHHhhCC----CcEEEeCCCHHHHHHHHHhcCCCEEEechh
Confidence 24444444443 223445555678888888888998876554
No 437
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=41.88 E-value=1.7e+02 Score=22.88 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--cCCcEEEEeecCCCc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIGNRGLGK 133 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliVig~~~~~~ 133 (164)
+.....+.+.+.+.|+++.....-+|-.+.|.+..++ .++|+||+. .+.+.
T Consensus 19 dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVItt-GGlgp 71 (413)
T TIGR00200 19 NTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFN-GGLGP 71 (413)
T ss_pred EchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEc-CCCCC
Confidence 4456677788888999988777767655555444222 358999995 33443
No 438
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=41.72 E-value=1.4e+02 Score=21.91 Aligned_cols=76 Identities=12% Similarity=0.029 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhcCceEEEEEee-C-------------ChhHHHHHHhhhcCCcEEEE--eecCCCccc-eecccchhHH
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFW-G-------------DPREKICEAIDKIPLSCLVI--GNRGLGKLK-RAIMGSVSNY 145 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-g-------------~~~~~I~~~a~~~~~dliVi--g~~~~~~~~-~~~~gs~~~~ 145 (164)
+.-.++.+.++..|+.++..... | .-.++..+.+++.++|.|-+ |.-....-. ..+-=....+
T Consensus 115 ~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~ 194 (281)
T PRK06806 115 QKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQE 194 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHH
Confidence 34566778888888887765322 2 12455666777789999999 764222111 1111234556
Q ss_pred HhhcCCCcEEEEc
Q 031168 146 VVNNGSCPVTVVK 158 (164)
Q Consensus 146 l~~~~~~pVlvv~ 158 (164)
+....++|+...-
T Consensus 195 i~~~~~iPlV~hG 207 (281)
T PRK06806 195 INDVVHIPLVLHG 207 (281)
T ss_pred HHHhcCCCEEEEC
Confidence 7777789988775
No 439
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=41.63 E-value=1.4e+02 Score=21.92 Aligned_cols=69 Identities=7% Similarity=-0.148 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEe----------e--CChhHHHHHHhhhc--CCcEEEEeecCCCccceecccchhHHHh
Q 031168 82 PETLDIVNTVARQKQIVVVMKIF----------W--GDPREKICEAIDKI--PLSCLVIGNRGLGKLKRAIMGSVSNYVV 147 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~----------~--g~~~~~I~~~a~~~--~~dliVig~~~~~~~~~~~~gs~~~~l~ 147 (164)
..+.+.+.+.+.+.++.+..+.. . |+..+.|++..+.. +++.+++-+... .+..+.
T Consensus 64 ~~L~~~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~----------~~~~lA 133 (286)
T PRK06027 64 ETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD----------DLRSLV 133 (286)
T ss_pred HHHHHHHHHHHHHhCCEEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh----------hHHHHH
Confidence 55667777777777776544322 2 57789999887663 567766665532 233457
Q ss_pred hcCCCcEEEEcCC
Q 031168 148 NNGSCPVTVVKQG 160 (164)
Q Consensus 148 ~~~~~pVlvv~~~ 160 (164)
.+..+|+..++..
T Consensus 134 ~~~gIp~~~~~~~ 146 (286)
T PRK06027 134 ERFGIPFHHVPVT 146 (286)
T ss_pred HHhCCCEEEeccC
Confidence 7778888887653
No 440
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=41.57 E-value=1.3e+02 Score=21.40 Aligned_cols=36 Identities=22% Similarity=0.027 Sum_probs=27.7
Q ss_pred ceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 5 RRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 5 ~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
++++|.+++.-+|..++.++.+- +.+++.+++....
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~----~~~v~alt~dygq 37 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ----YDEVHCVTFDYGQ 37 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc----CCeEEEEEEEeCC
Confidence 78999999999888887777442 3478899888653
No 441
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=41.52 E-value=40 Score=24.67 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=25.6
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
+--+++.++|++.++ |||+|.+..++..+++ ++......|.+.+-.
T Consensus 197 ~RQ~a~~~la~~vD~-miVVGg~nSsNT~rL~------ei~~~~~~~t~~Ie~ 242 (280)
T TIGR00216 197 NRQDAVKELAPEVDL-MIVIGGKNSSNTTRLY------EIAEEHGPPSYLIET 242 (280)
T ss_pred HHHHHHHHHHhhCCE-EEEECCCCCchHHHHH------HHHHHhCCCEEEECC
Confidence 445677788887532 5566766544333221 344454557776643
No 442
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=41.46 E-value=1.4e+02 Score=22.26 Aligned_cols=73 Identities=4% Similarity=-0.064 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHhcCceEEEEE-eeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKI-FWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+-+.+.+++.|+++.... ..++... .+++.....++|-|++.......+. +..++ +....+||+.+-
T Consensus 39 ~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~-----~~l~~-a~~~gIpVV~~d 112 (336)
T PRK15408 39 TSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLC-----PALKR-AMQRGVKVLTWD 112 (336)
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHH-----HHHHH-HHHCCCeEEEeC
Confidence 4456667777778888776532 1234433 3556666778999999643222111 22222 445689999885
Q ss_pred CC
Q 031168 159 QG 160 (164)
Q Consensus 159 ~~ 160 (164)
..
T Consensus 113 ~~ 114 (336)
T PRK15408 113 SD 114 (336)
T ss_pred CC
Confidence 43
No 443
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=41.34 E-value=55 Score=25.86 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=29.3
Q ss_pred CCchHHHHHHHHHHhcCceEEEEEe------eCChhHHHHHH-hhhcCCcEEEEeecCCC
Q 031168 80 PDPETLDIVNTVARQKQIVVVMKIF------WGDPREKICEA-IDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~I~~~-a~~~~~dliVig~~~~~ 132 (164)
..+++.+.+.+..++.+.+.-+.+- -|+-.+.+.+. .++.++.+|.+...+-.
T Consensus 81 ~~~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 81 DYEELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 3345555566666655543332221 15555556554 44778888888776543
No 444
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=41.29 E-value=1.5e+02 Score=22.12 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+-+..++.|..+.. +-.||+...|.-.....++|++ ||..
T Consensus 166 H~~lI~eiR~~Gari~L-i~DGDV~~ai~~~~~~s~vD~~-~GiG 208 (309)
T cd01516 166 HAALIEEIREAGARIKL-IPDGDVAAAIATALPGSGVDVL-MGIG 208 (309)
T ss_pred HHHHHHHHHHcCCeEEE-eccccHHHHHHHhCCCCCeeEE-EECC
Confidence 34444556667888775 6678999988887777888875 4444
No 445
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=41.15 E-value=2e+02 Score=24.98 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=39.1
Q ss_pred CCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEee
Q 031168 79 KPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~ 128 (164)
..++..+++++++..+-+..+..-.-.|+...+-.+...+.++|+|+...
T Consensus 126 ALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNp 175 (851)
T COG1205 126 ALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNP 175 (851)
T ss_pred hhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCH
Confidence 34577888899888887767888788898888888777777888888743
No 446
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=41.09 E-value=1.2e+02 Score=21.01 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
....+.+.+.+++.|+.+.......+.. ..+++.....++|.||+....... . .. -..+...+.|++++
T Consensus 15 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~-~-----~~-~~~~~~~~ipvV~~ 85 (266)
T cd06282 15 AECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAAT-S-----PA-LDLLDAERVPYVLA 85 (266)
T ss_pred HHHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCc-h-----HH-HHHHhhCCCCEEEE
Confidence 4567777777777888777654433443 244555555678999886432111 1 11 23455667888776
No 447
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=40.95 E-value=92 Score=19.64 Aligned_cols=46 Identities=9% Similarity=-0.015 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhh--cCCcEEEEe
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDK--IPLSCLVIG 127 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliVig 127 (164)
+..-..+...+++.|.++.....-+|-.+.|.+..++ .++|+|++.
T Consensus 18 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dlvitt 65 (133)
T cd00758 18 DTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTT 65 (133)
T ss_pred EchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 4456677777888898876654444444434433221 138988885
No 448
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=40.95 E-value=92 Score=24.74 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=33.6
Q ss_pred ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh-cCCCcEEEEcCC
Q 031168 107 DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN-NGSCPVTVVKQG 160 (164)
Q Consensus 107 ~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 160 (164)
..+....+.|...++++||+-+. + |+++..+.+ +.+|||+.+-++
T Consensus 360 ~ia~~a~~~a~~~~akaIVv~T~--S-------G~TA~~vSr~rp~~PIiAvT~~ 405 (473)
T TIGR01064 360 AIALSAVEAAEKLDAKAIVVLTE--S-------GRTARLLSKYRPNAPIIAVTPN 405 (473)
T ss_pred HHHHHHHHHHhhcCCCEEEEEcC--C-------hHHHHHHHhhCCCCCEEEEcCC
Confidence 34566677888999999988655 2 677787876 467999988654
No 449
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=40.60 E-value=65 Score=20.05 Aligned_cols=46 Identities=4% Similarity=-0.025 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCceEEEEEeeCC-hhHHHHHHhhhcCCcEEEEeecCC
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGD-PREKICEAIDKIPLSCLVIGNRGL 131 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliVig~~~~ 131 (164)
.+.+++.+++.|+.+..+..... +...+-. -.-..+|+||+-....
T Consensus 22 AeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~-~~i~~Ad~VIia~d~~ 68 (114)
T PRK10427 22 AERLEKLCQLEKWGVKIETQGALGTENRLTD-EDIRRADVVLLITDIE 68 (114)
T ss_pred HHHHHHHHHHCCCeEEEEecCCcCcCCCCCH-HHHHhCCEEEEEecCC
Confidence 36677777888988777665542 2222221 2222368888866543
No 450
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=40.40 E-value=1.3e+02 Score=21.02 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|.++.......++.+ ..++.....++|-||+-...... .....+....+.||+++..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~-------~~~~~l~~~~~ipvV~i~~ 87 (269)
T cd06275 15 AEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQ-------PLLAMLERYRHIPMVVMDW 87 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCh-------HHHHHHHhcCCCCEEEEec
Confidence 55777788888888877655333334432 44555666789988885432211 0112233345789888854
Q ss_pred C
Q 031168 160 G 160 (164)
Q Consensus 160 ~ 160 (164)
.
T Consensus 88 ~ 88 (269)
T cd06275 88 G 88 (269)
T ss_pred c
Confidence 3
No 451
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=40.31 E-value=1.3e+02 Score=21.20 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHH
Q 031168 85 LDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYV 146 (164)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l 146 (164)
..++-+.+++.|+..-..+.-+.+.+.+..+... +|+|.+=+-..+.-.+.|..+..+++
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~--vD~VlvMtV~PGf~GQ~fi~~~l~KI 158 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPE--LDLVLVMSVNPGFGGQAFIPSALDKL 158 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhh--cCEEEEEEECCCCCCccccHHHHHHH
Confidence 3445566677788877777778899999988887 57766655445554555555554444
No 452
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=40.19 E-value=1.7e+02 Score=22.48 Aligned_cols=58 Identities=12% Similarity=0.093 Sum_probs=34.2
Q ss_pred hcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCC-----ccceecccchhHHHhhcCCCcEEE
Q 031168 94 QKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLG-----KLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 94 ~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~-----~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
+.++.+. +..+ ....++.+.+.+.++|+|++-.+..+ ....+ ....++++..++||+.
T Consensus 130 ~a~Vtvk--iRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p---~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 130 DSGVITA--VRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEP---LNLKEFIGELDVPVIA 193 (369)
T ss_pred hcceEEE--EecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCH---HHHHHHHHHCCCCEEE
Confidence 3444434 3334 35778999999999999998643211 00011 1233466677899875
No 453
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=40.14 E-value=97 Score=20.14 Aligned_cols=21 Identities=14% Similarity=-0.067 Sum_probs=10.8
Q ss_pred hHHHHHHHHhhcccCCCEEEEE
Q 031168 17 SKKALQWAADNVVRNGDHLILV 38 (164)
Q Consensus 17 ~~~~l~~a~~la~~~~~~l~~l 38 (164)
+.-++..+..++++ +-++.++
T Consensus 12 T~va~~L~~~l~~~-g~~V~~~ 32 (166)
T TIGR00347 12 TVASSALAAKLKKA-GYSVGYY 32 (166)
T ss_pred HHHHHHHHHHHHHC-CCcEEEE
Confidence 44555566666543 3455443
No 454
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=39.94 E-value=90 Score=24.28 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=34.0
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
-.+.|.+.+++.++|-||.-...-=.....-...+-+.+......|+|.+-.
T Consensus 338 R~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~ 389 (413)
T TIGR02260 338 RVDLLEKYINEYEADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIET 389 (413)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEc
Confidence 4677999999999999999665321111111122345555668999999843
No 455
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=39.88 E-value=1.4e+02 Score=21.64 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
.+.+..+...+.+.|+++-+++..... ++.|...++++|-+..+....+.-- -..+.++....|-.+++|-
T Consensus 144 ~~~l~~l~~~a~~lGle~lVEVh~~~E----l~~al~~~a~iiGINnRdL~tf~vd--~~~~~~l~~~ip~~~~~is 214 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALVEVHNEEE----LERALEAGADIIGINNRDLKTFEVD--LNRTEELAPLIPKDVIVIS 214 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEESSHHH----HHHHHHTT-SEEEEESBCTTTCCBH--THHHHHHHCHSHTTSEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCHHH----HHHHHHcCCCEEEEeCccccCcccC--hHHHHHHHhhCccceeEEe
Confidence 456788889999999987665554322 3334466789999988876665522 3567778877765566554
No 456
>PRK08392 hypothetical protein; Provisional
Probab=39.76 E-value=1.1e+02 Score=21.22 Aligned_cols=67 Identities=13% Similarity=0.036 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCc--cceecccchhHHHhhcCCCc
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGK--LKRAIMGSVSNYVVNNGSCP 153 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~--~~~~~~gs~~~~l~~~~~~p 153 (164)
...+.+.+.+.+.|+.++.......|...+++.+++.++ .+++|+-.+.+ +.. + ..+..+++++..+
T Consensus 137 ~~~~~i~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~-~~~igSDAH~~~~vg~--~-~~a~~~~~~~g~~ 205 (215)
T PRK08392 137 EELKEILDLAEAYGKAFEISSRYRVPDLEFIRECIKRGI-KLTFASDAHRPEDVGN--V-SWSLKVFKKAGGK 205 (215)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCC-EEEEeCCCCChHHCCc--H-HHHHHHHHHcCCC
Confidence 345666677778888888776666778889999999886 58999875553 322 1 2456677776654
No 457
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=39.33 E-value=49 Score=21.41 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCceEEEEEee------CChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW------GDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVT 155 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~------g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVl 155 (164)
..--+...+...|..+...-.. |.......+....+ +|+||+-.... ...+.+..++.+||+
T Consensus 53 TR~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~-~D~iv~R~~~~---------~~~~~~a~~~~vPVI 120 (142)
T PF02729_consen 53 TRLSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRY-VDAIVIRHPSH---------GALEELAEHSSVPVI 120 (142)
T ss_dssp HHHHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHH-CSEEEEEESSH---------HHHHHHHHHCSSEEE
T ss_pred hhhhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHh-hheEEEEeccc---------hHHHHHHHhccCCeE
Confidence 3344455555667765443311 33344444454555 89999975533 345678888999996
No 458
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=39.29 E-value=1.4e+02 Score=21.33 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHh-cCceEEEEEeeC--C--hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 83 ETLDIVNTVARQ-KQIVVVMKIFWG--D--PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~~~~~~~g--~--~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
...+++.+.+++ +++++.- ...| + ..+.|++.+...++|+|++|-.... .+.+ ..+.....+.+|++
T Consensus 116 ~v~~~a~~~l~~~y~l~i~g-~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~Pk--QE~~----~~~~~~~~~~~v~~ 187 (243)
T PRK03692 116 EVLAQTEAKLRTQWNVNIVG-SQDGYFTPEQRQALFERIHASGAKIVTVAMGSPK--QEIF----MRDCRLVYPDALYM 187 (243)
T ss_pred HHHHHHHHHHHHHhCCEEEE-EeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCcH--HHHH----HHHHHHhCCCCEEE
Confidence 344444444432 3666432 2344 2 2466899999999999999987332 3333 24455566777654
No 459
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=39.15 E-value=1.3e+02 Score=20.77 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.+..+.+.+.+++.|+++...-..+++. ...++.....++|.||+......... . .-..+....+|++.+-.
T Consensus 15 ~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~-----~-~~~~l~~~~ip~V~~~~ 88 (267)
T cd01536 15 QAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALT-----P-ALKKANAAGIPVVTVDS 88 (267)
T ss_pred HHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHH-----H-HHHHHHHCCCcEEEecC
Confidence 5577777777877888777655544443 23444444447999988653211100 1 12344566789888743
No 460
>PTZ00300 pyruvate kinase; Provisional
Probab=39.14 E-value=1.1e+02 Score=24.15 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=32.7
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh-cCCCcEEEEcCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN-NGSCPVTVVKQG 160 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 160 (164)
.+....+.|...++++||+-++ + |.++..+.+ +.+||++.+-+.
T Consensus 336 ia~sa~~~a~~l~a~aIiv~T~--s-------G~tA~~vs~~RP~~pIia~t~~ 380 (454)
T PTZ00300 336 VCSSAVNSVYETKAKALVVLSN--T-------GRSARLVAKYRPNCPIVCVTTR 380 (454)
T ss_pred HHHHHHHHHHhCCCCEEEEECC--C-------cHHHHHHHhhCCCCCEEEECCC
Confidence 4556677888999998888554 2 667888887 467999988554
No 461
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=39.14 E-value=53 Score=25.70 Aligned_cols=55 Identities=15% Similarity=-0.071 Sum_probs=38.7
Q ss_pred hhhcCCCCchHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEee
Q 031168 74 KKYGAKPDPETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~ 128 (164)
++......++.++++.+.+++.|..+...-......+.|.+.+++.++.-|+.|.
T Consensus 42 k~~~~~~ld~~l~~~~~~~~~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~k 96 (432)
T TIGR00273 42 KLKVLENLDFYLDQLKENVTQRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSK 96 (432)
T ss_pred HHHHHhhHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3344455667777777777777877665333346677788999999999999974
No 462
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=39.07 E-value=77 Score=19.47 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=29.6
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGG 45 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~ 45 (164)
.+.+++.++.+......++.+.. |+..++++.++.-....+
T Consensus 47 ~~d~vi~iS~sG~t~~~~~~~~~-a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 47 PGDVVIAISNSGETDELLNLLPH-LKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH-HHHCCCeEEEEeCCCCCc
Confidence 35688999988888877766655 667788888776655443
No 463
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=38.49 E-value=1.7e+02 Score=22.48 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeC-Ch---hHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWG-DP---REKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~---~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
+-..+.+.+.+...|+.+.. +..| .. .+.+...+.+.++|.| +|-.+-.. =+++..+.....+|+..+
T Consensus 43 ~~~~~~~~~~l~~~g~~~~~-~~~~~a~~~ev~~~~~~~~~~~~d~v-IGVGGGk~------iD~aK~~A~~~~~pfIsv 114 (360)
T COG0371 43 AIAGEKVEKSLKDEGLVVHV-VFVGEASEEEVERLAAEAGEDGADVV-IGVGGGKT------IDTAKAAAYRLGLPFISV 114 (360)
T ss_pred HHHHHHHHHHhcccCcceee-eecCccCHHHHHHHHHHhcccCCCEE-EEecCcHH------HHHHHHHHHHcCCCEEEe
Confidence 44566777777777883333 3333 33 4444444544556654 44442111 257888888999999999
Q ss_pred cC
Q 031168 158 KQ 159 (164)
Q Consensus 158 ~~ 159 (164)
|-
T Consensus 115 PT 116 (360)
T COG0371 115 PT 116 (360)
T ss_pred cC
Confidence 84
No 464
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=38.45 E-value=1.5e+02 Score=23.43 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=22.2
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
+||||++ +..+-+..+++.+. ..|-++++++.....
T Consensus 2 ~~kvLi~-~~geia~~ii~a~~----~~Gi~~v~v~~~~d~ 37 (472)
T PRK07178 2 IKKILIA-NRGEIAVRIVRACA----EMGIRSVAIYSEADR 37 (472)
T ss_pred CcEEEEE-CCcHHHHHHHHHHH----HcCCeEEEEeCCCcc
Confidence 7999998 44444444444444 456777777665433
No 465
>PRK08227 autoinducer 2 aldolase; Validated
Probab=38.37 E-value=1.6e+02 Score=21.50 Aligned_cols=65 Identities=6% Similarity=-0.038 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCceEEEEEeeC-C------hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWG-D------PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g-~------~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
.+.++.+.|.+.|+++-...-.| . ....-.+.+-+.++|+|=+...+ ..-.+++..+++||++
T Consensus 128 ~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~----------~~f~~vv~a~~vPVvi 197 (264)
T PRK08227 128 NIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVE----------EGFERITAGCPVPIVI 197 (264)
T ss_pred HHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCH----------HHHHHHHHcCCCcEEE
Confidence 34555677778888754422223 1 12334467888899988766542 2334688899999998
Q ss_pred Ec
Q 031168 157 VK 158 (164)
Q Consensus 157 v~ 158 (164)
.-
T Consensus 198 aG 199 (264)
T PRK08227 198 AG 199 (264)
T ss_pred eC
Confidence 74
No 466
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=38.36 E-value=1.6e+02 Score=21.70 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=47.8
Q ss_pred HHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCcc-c-eecccchhHHHhhcCC--CcEEEEcCCC
Q 031168 90 TVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKL-K-RAIMGSVSNYVVNNGS--CPVTVVKQGI 161 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~-~-~~~~gs~~~~l~~~~~--~pVlvv~~~~ 161 (164)
+.+.+.+.-+-..-... .....+++.|++.+..+|+.-..+.... . -..+......+..++. .||.+-=++.
T Consensus 11 ~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg 87 (286)
T PRK08610 11 IDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHG 87 (286)
T ss_pred HHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 34555566554444444 7789999999999999999877654332 1 1224567777777776 7988765543
No 467
>PRK01215 competence damage-inducible protein A; Provisional
Probab=38.24 E-value=1.5e+02 Score=21.43 Aligned_cols=45 Identities=13% Similarity=-0.062 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHH---hhhcCCcEEEEe
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEA---IDKIPLSCLVIG 127 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~---a~~~~~dliVig 127 (164)
+.....+.+.+.+.|+++.....-+|-.+.|.+. +.. ++|+||+.
T Consensus 22 dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~-~~DlVItt 69 (264)
T PRK01215 22 NTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAID-RADVVVST 69 (264)
T ss_pred EhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc-CCCEEEEe
Confidence 4456677788888999987776666554444443 333 46998886
No 468
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=38.21 E-value=77 Score=22.03 Aligned_cols=44 Identities=27% Similarity=0.229 Sum_probs=33.7
Q ss_pred CCCCceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCCC
Q 031168 1 MDGTRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEGG 45 (164)
Q Consensus 1 m~~~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~~ 45 (164)
|-...-|++++++|.+.... ..++..+++.+++|..+.-.+.++
T Consensus 83 ~i~~~DvviaiS~SGeT~el-~~~~~~aK~~g~~liaiT~~~~Ss 126 (202)
T COG0794 83 MITPGDVVIAISGSGETKEL-LNLAPKAKRLGAKLIAITSNPDSS 126 (202)
T ss_pred CCCCCCEEEEEeCCCcHHHH-HHHHHHHHHcCCcEEEEeCCCCCh
Confidence 34567899999999877754 456677888999999988777654
No 469
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=38.20 E-value=1.7e+02 Score=21.90 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecC-CC--cccee----cccchhHHHhhcCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRG-LG--KLKRA----IMGSVSNYVVNNGSC 152 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~-~~--~~~~~----~~gs~~~~l~~~~~~ 152 (164)
+..++.+.....+.++.+-..+...++. ..+.+.+++.++|.|-+.-.. .. ..... .+-.+...+....++
T Consensus 87 d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~i 166 (334)
T PRK07565 87 EEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSI 166 (334)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCC
Confidence 3444555443333345554444332333 255566666789999995432 11 11100 012334556666789
Q ss_pred cEEEE
Q 031168 153 PVTVV 157 (164)
Q Consensus 153 pVlvv 157 (164)
||++=
T Consensus 167 PV~vK 171 (334)
T PRK07565 167 PVAVK 171 (334)
T ss_pred cEEEE
Confidence 98753
No 470
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=38.13 E-value=1.6e+02 Score=21.70 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEE
Q 031168 83 ETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCL 124 (164)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dli 124 (164)
+.+..+.+.+++.|+.+..|.-+......+.......+++.+
T Consensus 172 ~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri 213 (324)
T TIGR01430 172 PDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRI 213 (324)
T ss_pred HHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhc
Confidence 445666677778899988888764333344444445555543
No 471
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=38.07 E-value=1.6e+02 Score=21.44 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
++-++.+++..++.|+.+.+++..-.-.+.+.++ +|+|=||.+.
T Consensus 59 eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~-----vDilQIgArn 102 (258)
T TIGR01362 59 EEGLKILQKVKEEFGVPILTDVHESSQCEPVAEV-----VDIIQIPAFL 102 (258)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-----CcEEEeCchh
Confidence 4567888888888899998877664433333332 6888888863
No 472
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=38.00 E-value=1e+02 Score=21.73 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=21.3
Q ss_pred EeeCChhHHHHHHhhhcCCcEEEEeec
Q 031168 103 IFWGDPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 103 ~~~g~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.|.+..+-+..+.+.++|.+|+|+.
T Consensus 177 ~VdGGI~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 177 QVDGGINLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEchH
Confidence 455777777777788889999999965
No 473
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=37.90 E-value=76 Score=19.42 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=28.7
Q ss_pred CceEEEEeCCChhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 4 TRRVGVAVDFSACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 4 ~~~ILv~~d~s~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
.+.+++.++.+......+ .+++.|+..++++..+.-.+..
T Consensus 46 ~~d~~I~iS~sG~t~e~~-~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 46 EDTLVIAISQSGETADTL-AALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CCcEEEEEeCCcCCHHHH-HHHHHHHHcCCeEEEEECCCCC
Confidence 467899999998887755 4566677788887777655433
No 474
>TIGR00930 2a30 K-Cl cotransporter.
Probab=37.82 E-value=2.9e+02 Score=24.40 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=24.9
Q ss_pred cCCcEEEEeecCCCcc--c-eecccchhHHHhhcCCCcEEEEcCCCCC
Q 031168 119 IPLSCLVIGNRGLGKL--K-RAIMGSVSNYVVNNGSCPVTVVKQGIHE 163 (164)
Q Consensus 119 ~~~dliVig~~~~~~~--~-~~~~gs~~~~l~~~~~~pVlvv~~~~~~ 163 (164)
.+++|||+.-+..... . ..++ +..+.+.+.. .|+|+|+..+.+
T Consensus 902 ~~a~lv~~~lp~p~~~~~~~~~Ym-~~l~~lt~~l-~p~llvrGn~~~ 947 (953)
T TIGR00930 902 RDAALVVLSLPVPRKGSISDELYM-AWLEVLSEDL-PPVLLVRGNHRN 947 (953)
T ss_pred CCCcEEEEeCCCCCCCCCCHHHHH-HHHHHHhcCC-CCeEEEecCCce
Confidence 4578999987643321 1 1222 2344444444 699999876653
No 475
>PRK06354 pyruvate kinase; Provisional
Probab=37.80 E-value=98 Score=25.42 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=32.6
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhh-cCCCcEEEEcCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVN-NGSCPVTVVKQG 160 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 160 (164)
.+....+.|...++++||+-++ + |+++..+.+ +.+|||+.+-+.
T Consensus 365 ia~aa~~~a~~~~a~~Iv~~T~--s-------G~ta~~vsk~Rp~~pI~a~t~~ 409 (590)
T PRK06354 365 ISQAVSHIALQLDAAAIVTLTK--S-------GATARNVSKYRPKTPILAVTPN 409 (590)
T ss_pred HHHHHHHHHhhcCCCEEEEECC--C-------hHHHHHHHhhCCCCCEEEECCC
Confidence 3455567788999999988654 2 677888887 467999988654
No 476
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=37.70 E-value=1.6e+02 Score=21.53 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEee--C-ChhHHHHHHhhhcCCcEEEEeec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFW--G-DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~--g-~~~~~I~~~a~~~~~dliVig~~ 129 (164)
+...+.+++.+++.|+++...... + .-...++...++.++|.|++...
T Consensus 149 ~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~ 199 (334)
T cd06327 149 HSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLANA 199 (334)
T ss_pred HHHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEecc
Confidence 445666777777777765433322 2 22334444445566888887654
No 477
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=37.69 E-value=1.2e+02 Score=20.06 Aligned_cols=46 Identities=9% Similarity=-0.003 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHH----hhhcCCcEEEEe
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEA----IDKIPLSCLVIG 127 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~----a~~~~~dliVig 127 (164)
+..-..+...+++.|.++.....-.|-.+.|.+. ....++|+||+.
T Consensus 21 d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVItt 70 (163)
T TIGR02667 21 DTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILIT 70 (163)
T ss_pred CCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3445566777788888866654444444434333 223468999885
No 478
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=37.67 E-value=91 Score=24.01 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=23.4
Q ss_pred hHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 17 SKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 17 ~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
...++..++.||+..+++++++|+....
T Consensus 197 E~~ai~~~~~la~~~~~~~~i~Hvs~~~ 224 (411)
T TIGR00857 197 EEVAVARLLELAKHAGCPVHICHISTKE 224 (411)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEeCCCHH
Confidence 3457888899999999999999998744
No 479
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.65 E-value=1.4e+02 Score=20.81 Aligned_cols=71 Identities=10% Similarity=0.039 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChh--HHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPR--EKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVK 158 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 158 (164)
....+.+.+.+.+.|+.+......+++. ..+++.....++|-||+......... ... ..+....+||+++-
T Consensus 16 ~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~-----~~l-~~~~~~~iPvV~~~ 88 (275)
T cd06317 16 TTYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYI-----PGL-RKAKQAGIPVVITN 88 (275)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccH-----HHH-HHHHHCCCcEEEeC
Confidence 4566777777777888766543333443 33445555668999988643221111 122 23456789988774
No 480
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=37.28 E-value=1.5e+02 Score=20.94 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=12.2
Q ss_pred hHHHHHHhhhcCCcEEEEee
Q 031168 109 REKICEAIDKIPLSCLVIGN 128 (164)
Q Consensus 109 ~~~I~~~a~~~~~dliVig~ 128 (164)
.+.+++.+++.++|+||+..
T Consensus 20 le~l~~~~~~~~~D~vv~~G 39 (224)
T cd07388 20 LEKLVGLAPETGADAIVLIG 39 (224)
T ss_pred HHHHHHHHhhcCCCEEEECC
Confidence 45566666666677666643
No 481
>PF13941 MutL: MutL protein
Probab=37.28 E-value=2.1e+02 Score=22.74 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQ 159 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 159 (164)
..+..++.+...|..+.. +..+...+.=++...+.++|+|++.....+.....++ ..++.|... ..+||++.-+
T Consensus 89 Ta~AAk~AAlgAGA~V~~-v~s~~l~~~~l~~i~~~~PDiILLaGGtDgG~~~~il-~nA~~La~~~~~~pVIyAGN 163 (457)
T PF13941_consen 89 TAEAAKRAALGAGARVLQ-VYSYELTEEDLEEIREIRPDIILLAGGTDGGNKEVIL-HNAEMLAEANLRIPVIYAGN 163 (457)
T ss_pred HHHHHHHHHhcCCcEEEE-EeccCCCHHHHHHHhccCCCEEEEeCCccCCchHHHH-HHHHHHHhCCCCCcEEEECC
Confidence 344555555556766544 4445666666667788899999996554444444433 566655543 3688887654
No 482
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=37.26 E-value=1.9e+02 Score=22.16 Aligned_cols=76 Identities=8% Similarity=0.038 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCceEEEEEeeC-ChhHHHHHHhhhcCCcEEEEeecCCCcc-c----ee------------cccchhHHHh
Q 031168 86 DIVNTVARQKQIVVVMKIFWG-DPREKICEAIDKIPLSCLVIGNRGLGKL-K----RA------------IMGSVSNYVV 147 (164)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~-~----~~------------~~gs~~~~l~ 147 (164)
..+.+.+++.+.-+-..-... ....++++.|++.+..+|+..+.+.-.. . .. .+......+.
T Consensus 16 ~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~A 95 (357)
T TIGR01520 16 HKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIA 95 (357)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHH
Confidence 334444556676655544444 7899999999999999999876643221 1 01 1455777788
Q ss_pred hcCCCcEEEEcCCC
Q 031168 148 NNGSCPVTVVKQGI 161 (164)
Q Consensus 148 ~~~~~pVlvv~~~~ 161 (164)
.++.+||.+-=++.
T Consensus 96 e~a~VPValHLDHg 109 (357)
T TIGR01520 96 EHYGVPVVLHTDHC 109 (357)
T ss_pred HHCCCCEEEECCCC
Confidence 89999998765544
No 483
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=37.09 E-value=1.1e+02 Score=19.47 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=26.4
Q ss_pred CCceEEEEeCCC--h----hhHHHHHHHHhhcccCCCEEEEEEEe
Q 031168 3 GTRRVGVAVDFS--A----CSKKALQWAADNVVRNGDHLILVTVV 41 (164)
Q Consensus 3 ~~~~ILv~~d~s--~----~~~~~l~~a~~la~~~~~~l~~l~v~ 41 (164)
.-++|.+++|.. + .-..++.....+.+..++++.++.-.
T Consensus 67 ~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~ 111 (130)
T PF12965_consen 67 PGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWP 111 (130)
T ss_pred CCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 357899999987 2 22355555556666778888887654
No 484
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=37.09 E-value=92 Score=23.85 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCceEEEE-EeeC----ChhHHHHHHhhhcCCcEEE-Eeec
Q 031168 84 TLDIVNTVARQKQIVVVMK-IFWG----DPREKICEAIDKIPLSCLV-IGNR 129 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~g----~~~~~I~~~a~~~~~dliV-ig~~ 129 (164)
..+++.+.+++.|+.+... -... +..+.+.+.+++.++|.|| +|..
T Consensus 47 ~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGG 98 (383)
T PRK09860 47 MAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGG 98 (383)
T ss_pred cHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 5567777777778764322 1111 2356777889999999988 6643
No 485
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=37.04 E-value=1.9e+02 Score=22.25 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=27.0
Q ss_pred EEEEeCCC-hhhHHHHHHHHhhcccCCCEEEEEEEecCC
Q 031168 7 VGVAVDFS-ACSKKALQWAADNVVRNGDHLILVTVVPEG 44 (164)
Q Consensus 7 ILv~~d~s-~~~~~~l~~a~~la~~~~~~l~~l~v~~~~ 44 (164)
|.+..+.. .....+++.++.+++..+.++++.|+....
T Consensus 215 v~~H~e~~~~~e~~av~~~~~~a~~~g~r~~i~H~ss~~ 253 (415)
T cd01297 215 YQTHVRYEGDSILEALDELLRLGRETGRPVHISHLKSAG 253 (415)
T ss_pred EEEEECcccccHHHHHHHHHHHHHHhCCCEEEEEEecCC
Confidence 33444433 334568888999998889999999997654
No 486
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=36.98 E-value=1.9e+02 Score=22.00 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=38.1
Q ss_pred HHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccc-eecccchhHHHh-hcCCCcEEEEc
Q 031168 90 TVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLK-RAIMGSVSNYVV-NNGSCPVTVVK 158 (164)
Q Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~-~~~~gs~~~~l~-~~~~~pVlvv~ 158 (164)
..+.+.|++++.... + .+....++.++|.+++|...-.... -.-+|+-.-.++ ++..+|++++-
T Consensus 201 ~eL~~~GI~vtlI~D--s---a~~~~M~~~~Vd~VivGAd~I~anGv~NKiGT~~lA~~Ak~~~vPfyV~a 266 (339)
T PRK06036 201 WELMQDNIPVTLITD--S---MAGIVMRQGMVDKVIVGADRITRDAVFNKIGTYTHSVLAKEHEIPFYVAA 266 (339)
T ss_pred HHHHHcCCCEEEEeh--h---HHHHHhccCCCCEEEECccchhhcCeehhhhHHHHHHHHHHhCCCEEEEe
Confidence 345567998886432 2 2333455566899999997532221 111455554444 56689999874
No 487
>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=36.81 E-value=36 Score=22.57 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=31.7
Q ss_pred CcEEEEeecCCCccceecccchhHHHhhcCCCcEEEE
Q 031168 121 LSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVV 157 (164)
Q Consensus 121 ~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 157 (164)
..+++++.+....+.+.+||.+..+=+-..-.|||.-
T Consensus 135 ~el~lL~~~~~~SfDsRYfGpipas~vig~aRPvwt~ 171 (173)
T COG4959 135 SELLLLTDRSSTSFDSRYFGPIPASQVIGVARPVWTE 171 (173)
T ss_pred CeEEEEeccCCcccccceecccCHHHcceeeeeeecc
Confidence 3789999998889999999999998888888888753
No 488
>PRK05826 pyruvate kinase; Provisional
Probab=36.81 E-value=1.2e+02 Score=24.03 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=32.6
Q ss_pred ChhHHHHHHhhhcC-CcEEEEeecCCCccceecccchhHHHhh-cCCCcEEEEcCC
Q 031168 107 DPREKICEAIDKIP-LSCLVIGNRGLGKLKRAIMGSVSNYVVN-NGSCPVTVVKQG 160 (164)
Q Consensus 107 ~~~~~I~~~a~~~~-~dliVig~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 160 (164)
..+...++.|...+ +++||+-++ + |.++..+.+ +.+|||+.+-+.
T Consensus 359 ~ia~aa~~~a~~l~~a~~Ivv~T~--s-------G~ta~~isk~RP~~pI~~~t~~ 405 (465)
T PRK05826 359 AIAMSAMYAANHLKGVKAIVALTE--S-------GRTARLISRFRPGAPIFAVTRD 405 (465)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECC--C-------cHHHHHHHhhCCCCCEEEEcCC
Confidence 34556677888888 888888544 2 667787887 467999988654
No 489
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=36.74 E-value=2.1e+02 Score=22.42 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceec
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAI 138 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~ 138 (164)
-.+.++++.++.-.|++++...-.-+..++|..+... |+|.+.+-|++......
T Consensus 246 IGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~---d~ILVDTaGrs~~D~~~ 299 (407)
T COG1419 246 IGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC---DVILVDTAGRSQYDKEK 299 (407)
T ss_pred hhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC---CEEEEeCCCCCccCHHH
Confidence 4477888999988898887643333555665555444 99999998888655443
No 490
>PLN02762 pyruvate kinase complex alpha subunit
Probab=36.68 E-value=1.3e+02 Score=24.34 Aligned_cols=44 Identities=9% Similarity=0.307 Sum_probs=32.8
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc-CCCcEEEEcCC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN-GSCPVTVVKQG 160 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 160 (164)
.+....+.|...++.+||+-++ + |+++..+.+. .+|||+.+-+.
T Consensus 397 ia~sa~~~A~~l~a~aIv~~T~--s-------G~tA~~iSk~RP~~pIia~t~~ 441 (509)
T PLN02762 397 ICNSAAKMANNLGVDAIFVYTK--H-------GHMASLLSRNRPDCPIFAFTDT 441 (509)
T ss_pred HHHHHHHHHhhcCCCEEEEECC--C-------cHHHHHHHhhCCCCCEEEECCC
Confidence 4556677888999999888654 2 6778888874 67999988654
No 491
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.66 E-value=1.5e+02 Score=20.73 Aligned_cols=72 Identities=13% Similarity=0.007 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
....+.+.+.+++.|+++......+++.. ..++.....++|-||+......... .... -+...++||+.+-.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~-----~~i~-~~~~~~ipvV~~~~ 88 (273)
T cd06305 15 QAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLK-----PWVK-RALDAGIPVVAFDV 88 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhH-----HHHH-HHHHcCCCEEEecC
Confidence 45667777788888888766433334432 3444444557998888643221111 1122 24456788887754
No 492
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=36.43 E-value=1.6e+02 Score=20.95 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccceecccch---hHHHhhcCCCcEEE
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSV---SNYVVNNGSCPVTV 156 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~---~~~l~~~~~~pVlv 156 (164)
..+.+.+.+++.|+..-..+....+.+.|...+....--+.+|+..+-......+..+. ..++-...++|+++
T Consensus 117 e~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 117 EAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 45677778888899877766666777777777763222345556544333332222233 33344445688775
No 493
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=36.42 E-value=1.1e+02 Score=21.95 Aligned_cols=71 Identities=11% Similarity=0.029 Sum_probs=44.3
Q ss_pred HHHHHhhcccCCCEEEEEEEecCCCCCccccccccCCCCCCCCCCCCccchhhhhhcCCCCchHHHHHHHHHHhcCceEE
Q 031168 21 LQWAADNVVRNGDHLILVTVVPEGGLEKGEQQLWEDSGSPLIPLAEFSEPTIMKKYGAKPDPETLDIVNTVARQKQIVVV 100 (164)
Q Consensus 21 l~~a~~la~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (164)
.-.++.+|...|+.=+-+|..+... ....+=+..+++.+..+
T Consensus 24 pv~aA~~a~~aGAdgITvHlReDrR---------------------------------HI~d~Dv~~L~~~~~~~----- 65 (239)
T PF03740_consen 24 PVEAARIAEEAGADGITVHLREDRR---------------------------------HIQDRDVRRLRELVKTP----- 65 (239)
T ss_dssp HHHHHHHHHHTT-SEEEEEB-TT-S---------------------------------SS-HHHHHHHHHH-SSE-----
T ss_pred HHHHHHHHHHcCCCEEEeccCCCcC---------------------------------cCCHHHHHHHHHHcccC-----
Confidence 3456677777888888888887653 23344556666666433
Q ss_pred EEEeeCChhHHHHHHhhhcCCcEEEEeecC
Q 031168 101 MKIFWGDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 101 ~~~~~g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
.-.++.+.+++++.|.+.++|.+.+-.-+
T Consensus 66 -lNlE~a~t~e~~~ia~~~kP~~vtLVPE~ 94 (239)
T PF03740_consen 66 -LNLEMAPTEEMVDIALKVKPDQVTLVPEK 94 (239)
T ss_dssp -EEEEEESSHHHHHHHHHH--SEEEEE--S
T ss_pred -EEeccCCCHHHHHHHHhCCcCEEEECCCC
Confidence 33457889999999999999999997654
No 494
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=36.41 E-value=93 Score=23.61 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=30.1
Q ss_pred hhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhc--CCCcEEEEcC
Q 031168 108 PREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNN--GSCPVTVVKQ 159 (164)
Q Consensus 108 ~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~--~~~pVlvv~~ 159 (164)
..+.|.+..+.+++++|++-...-+. ++|...+.+++. .++||+.|+-
T Consensus 63 L~eaI~ea~e~y~P~lI~VvTTCvse----IIGDDIeaVvkE~~~giPVI~V~t 112 (352)
T TIGR03282 63 LVKVIRYAEEKFKPELIGVVGTCASM----IIGEDLKEAVDEADVDAEVIAVEV 112 (352)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCchh----hccCCHHHHHHHhCCCCCEEEEEC
Confidence 45666666777778877776665443 346666666553 3577777753
No 495
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=36.34 E-value=1.1e+02 Score=19.07 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCC
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLG 132 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~ 132 (164)
++..+.+.+.+...|++++..-........+ .++|.||+|.+...
T Consensus 13 ~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l------~~~d~iilgspty~ 57 (140)
T TIGR01753 13 EEMANIIAEGLKEAGAEVDLLEVADADAEDL------LSYDAVLLGCSTWG 57 (140)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcccCCHHHH------hcCCEEEEEcCCCC
Confidence 5566777777777787776544332222222 23799999987543
No 496
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=36.30 E-value=1.3e+02 Score=22.64 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHhcCceEEEEEeeCChhHHHHHHhhhcCCcEEEEeecCCCccc
Q 031168 82 PETLDIVNTVARQKQIVVVMKIFWGDPREKICEAIDKIPLSCLVIGNRGLGKLK 135 (164)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliVig~~~~~~~~ 135 (164)
-...+.+-..+++.|.++..-.+.-+ .+.+..+.++.+.+++|.++.+...
T Consensus 13 vhfFk~~I~eL~~~GheV~it~R~~~---~~~~LL~~yg~~y~~iG~~g~~~~~ 63 (335)
T PF04007_consen 13 VHFFKNIIRELEKRGHEVLITARDKD---ETEELLDLYGIDYIVIGKHGDSLYG 63 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEeccc---hHHHHHHHcCCCeEEEcCCCCCHHH
Confidence 34566667777777887776666544 4444555778899999988755433
No 497
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=36.29 E-value=52 Score=20.21 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCceEEEEEee-CChhHHHHHHhhhcCCcEEEEeecC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFW-GDPREKICEAIDKIPLSCLVIGNRG 130 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliVig~~~ 130 (164)
..+.+++.....++++-..... +...+..++.++.. .-++++|..+
T Consensus 46 ~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~vg~~~ 92 (130)
T PF00107_consen 46 FVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPG-GRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEE-EEEEEESSTS
T ss_pred cccccccccccccceEEEEecCcHHHHHHHHHHhccC-CEEEEEEccC
Confidence 5666666655555665554433 35566666666664 4678888775
No 498
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=36.09 E-value=1.3e+02 Score=20.00 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHh--cCceEEEE--EeeC-ChhHHHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEE
Q 031168 82 PETLDIVNTVARQ--KQIVVVMK--IFWG-DPREKICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTV 156 (164)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~~~--~~~g-~~~~~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 156 (164)
++.++.+.+.+++ +++++... --.+ .....|++.+.+.++|+|++|-... -.+.+ +.+...+.+.+|++
T Consensus 56 ~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~P--kQE~~----~~~~~~~l~~~v~~ 129 (171)
T cd06533 56 PEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAP--KQELW----IARHKDRLPVPVAI 129 (171)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCC--HHHHH----HHHHHHHCCCCEEE
Confidence 3445555444444 46665542 1122 3345589999999999999998733 23333 24455555666655
No 499
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=36.08 E-value=1.8e+02 Score=21.47 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCceEEEEEeeCChhH--HHHHHhhhcCCcEEEEeecCCCccceecccchhHHHhhcCCCcEEEEcC
Q 031168 84 TLDIVNTVARQKQIVVVMKIFWGDPRE--KICEAIDKIPLSCLVIGNRGLGKLKRAIMGSVSNYVVNNGSCPVTVVKQ 159 (164)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~~~~dliVig~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 159 (164)
.++.+.+... ..+++-..+- ++..+ ...+.+++.++|-+++..+.......--+-..-..|...++.||++...
T Consensus 65 ~~~~~~~~~~-~~~pvi~gv~-~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~ 140 (303)
T PRK03620 65 VVRAAVETTA-GRVPVIAGAG-GGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNR 140 (303)
T ss_pred HHHHHHHHhC-CCCcEEEecC-CCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 4444444432 2455544443 24433 3447788899999999776433222111123344577788999998853
No 500
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=36.08 E-value=1.4e+02 Score=20.37 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=25.9
Q ss_pred HHHHHhcCceEEEEEee--C---ChhHHHHHHhhhcCCcEEEEeec
Q 031168 89 NTVARQKQIVVVMKIFW--G---DPREKICEAIDKIPLSCLVIGNR 129 (164)
Q Consensus 89 ~~~~~~~~~~~~~~~~~--g---~~~~~I~~~a~~~~~dliVig~~ 129 (164)
.+.+++.|+++...-.. . ...+++.+..+..++|++|+-..
T Consensus 43 ~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~ 88 (190)
T TIGR00639 43 LERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAGF 88 (190)
T ss_pred HHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeCc
Confidence 45567778876542111 1 12457788888888999988654
Done!